Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06697.t1 | PNX80618.1 | 58 | 138 | 57 | 1 | 14 | 150 | 121 | 258 | 3.00E-39 | 171.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06697.t1 | P08770 | 34.1 | 123 | 77 | 3 | 37 | 157 | 260 | 380 | 1.1e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06697.t1 | A0A2K3LQ10 | 58.0 | 138 | 57 | 1 | 14 | 150 | 121 | 258 | 2.1e-39 | 171.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene06697 | 0.833537 | 5.04E-56 | -1.69E-46 |
| MS.gene049254 | MS.gene06697 | 0.825339 | 4.95E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene06697 | 0.82496 | 6.08E-54 | -1.69E-46 |
| MS.gene049501 | MS.gene06697 | 0.819517 | 1.11E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene06697 | 0.818817 | 1.61E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene06697 | 0.808376 | 3.19E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene06697 | 0.815748 | 7.89E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene06697 | 0.80676 | 7.04E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene06697 | 0.804876 | 1.75E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene06697 | 0.809857 | 1.54E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene06697 | 0.801032 | 1.09E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene06697 | 0.860293 | 2.28E-63 | -1.69E-46 |
| MS.gene050719 | MS.gene06697 | 0.806074 | 9.81E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene06697 | 0.802973 | 4.35E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene06697 | 0.814815 | 1.27E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene06697 | 0.804903 | 1.73E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene06697 | 0.800031 | 1.74E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene06697 | 0.81141 | 7.10E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene06697 | 0.831401 | 1.70E-55 | -1.69E-46 |
| MS.gene051198 | MS.gene06697 | 0.806863 | 6.69E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene06697 | 0.827095 | 1.89E-54 | -1.69E-46 |
| MS.gene051265 | MS.gene06697 | 0.833339 | 5.65E-56 | -1.69E-46 |
| MS.gene051388 | MS.gene06697 | 0.810752 | 9.86E-51 | -1.69E-46 |
| MS.gene051710 | MS.gene06697 | 0.810545 | 1.09E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene06697 | 0.835077 | 2.07E-56 | -1.69E-46 |
| MS.gene051800 | MS.gene06697 | 0.808411 | 3.14E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene06697 | 0.834296 | 3.25E-56 | -1.69E-46 |
| MS.gene052042 | MS.gene06697 | 0.803747 | 3.01E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene06697 | 0.800208 | 1.61E-48 | -1.69E-46 |
| MS.gene052190 | MS.gene06697 | 0.812141 | 4.92E-51 | -1.69E-46 |
| MS.gene052208 | MS.gene06697 | 0.801418 | 9.09E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene06697 | 0.832367 | 9.84E-56 | -1.69E-46 |
| MS.gene052519 | MS.gene06697 | 0.817828 | 2.69E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene06697 | 0.81014 | 1.34E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene06697 | 0.817591 | 3.05E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene06697 | 0.821332 | 4.27E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene06697 | 0.8004 | 1.47E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene06697 | 0.8261 | 3.26E-54 | -1.69E-46 |
| MS.gene05288 | MS.gene06697 | 0.814296 | 1.66E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene06697 | 0.807082 | 6.01E-50 | -1.69E-46 |
| MS.gene05289 | MS.gene06697 | 0.807819 | 4.19E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene06697 | 0.828217 | 1.02E-54 | -1.69E-46 |
| MS.gene053201 | MS.gene06697 | 0.806164 | 9.40E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene06697 | 0.80643 | 8.26E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene06697 | 0.823682 | 1.21E-53 | -1.69E-46 |
| MS.gene053584 | MS.gene06697 | 0.82526 | 5.16E-54 | -1.69E-46 |
| MS.gene053641 | MS.gene06697 | 0.804311 | 2.30E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene06697 | 0.817531 | 3.14E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene06697 | 0.838921 | 2.16E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene06697 | 0.82183 | 3.28E-53 | -1.69E-46 |
| MS.gene05417 | MS.gene06697 | 0.821613 | 3.68E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene06697 | 0.842821 | 2.05E-58 | -1.69E-46 |
| MS.gene054291 | MS.gene06697 | -0.829747 | 4.33E-55 | -1.69E-46 |
| MS.gene054467 | MS.gene06697 | 0.8488 | 4.86E-60 | -1.69E-46 |
| MS.gene054468 | MS.gene06697 | 0.818419 | 1.98E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene06697 | 0.811952 | 5.41E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene06697 | 0.814551 | 1.45E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene06697 | 0.827436 | 1.57E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene06697 | 0.821404 | 4.11E-53 | -1.69E-46 |
| MS.gene054801 | MS.gene06697 | 0.826392 | 2.78E-54 | -1.69E-46 |
| MS.gene055227 | MS.gene06697 | 0.815895 | 7.31E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene06697 | 0.839402 | 1.62E-57 | -1.69E-46 |
| MS.gene055356 | MS.gene06697 | 0.815145 | 1.07E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene06697 | 0.865262 | 6.71E-65 | -1.69E-46 |
| MS.gene055466 | MS.gene06697 | 0.801373 | 9.29E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene06697 | 0.807473 | 4.97E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene06697 | 0.865798 | 4.55E-65 | -1.69E-46 |
| MS.gene055926 | MS.gene06697 | 0.802118 | 6.53E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene06697 | 0.821242 | 4.48E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene06697 | 0.817714 | 2.86E-52 | -1.69E-46 |
| MS.gene056142 | MS.gene06697 | 0.815834 | 7.54E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene06697 | 0.824317 | 8.62E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene06697 | 0.810468 | 1.14E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene06697 | 0.827811 | 1.27E-54 | -1.69E-46 |
| MS.gene056373 | MS.gene06697 | 0.80221 | 6.25E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene06697 | 0.801694 | 7.98E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene06697 | 0.82173 | 3.46E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene06697 | 0.815473 | 9.08E-52 | -1.69E-46 |
| MS.gene056952 | MS.gene06697 | 0.808821 | 2.57E-50 | -1.69E-46 |
| MS.gene057012 | MS.gene06697 | 0.806379 | 8.46E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene06697 | 0.815934 | 7.17E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene06697 | 0.823521 | 1.32E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene06697 | 0.83087 | 2.30E-55 | -1.69E-46 |
| MS.gene057444 | MS.gene06697 | 0.826447 | 2.70E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene06697 | 0.808097 | 3.66E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene06697 | 0.837198 | 5.99E-57 | -1.69E-46 |
| MS.gene057915 | MS.gene06697 | 0.829167 | 5.99E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene06697 | 0.818126 | 2.31E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene06697 | 0.825962 | 3.52E-54 | -1.69E-46 |
| MS.gene058294 | MS.gene06697 | 0.80152 | 8.66E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene06697 | 0.802212 | 6.25E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene06697 | 0.800671 | 1.29E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene06697 | 0.845045 | 5.19E-59 | -1.69E-46 |
| MS.gene058829 | MS.gene06697 | 0.810817 | 9.55E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene06697 | 0.828049 | 1.12E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene06697 | 0.806546 | 7.80E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene06697 | 0.800131 | 1.66E-48 | -1.69E-46 |
| MS.gene059550 | MS.gene06697 | 0.812419 | 4.28E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene06697 | 0.807884 | 4.06E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene06697 | 0.821279 | 4.39E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene06697 | -0.810729 | 9.98E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene06697 | 0.837612 | 4.69E-57 | -1.69E-46 |
| MS.gene060312 | MS.gene06697 | 0.813138 | 2.98E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene06697 | 0.827535 | 1.48E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene06697 | 0.803045 | 4.20E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene06697 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene06697 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene06697 | 0.808857 | 2.52E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene06697 | 0.813042 | 3.13E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene06697 | 0.80113 | 1.04E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06697.t1 | MTR_4g120840 | 47.872 | 94 | 48 | 1 | 1 | 93 | 13 | 106 | 4.17e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGAAAGGTTGTGTTTA+GGG | 0.236468 | 3.3:-76423634 | MS.gene06697:CDS |
| TACAATGGTTAGAGATGTTT+TGG | 0.255930 | 3.3:-76423310 | MS.gene06697:CDS |
| CATTGAGGGATTGGGGTCTT+AGG | 0.272322 | 3.3:-76423380 | MS.gene06697:CDS |
| CTTCAAGAAAGGTTGTGTTT+AGG | 0.331468 | 3.3:-76423635 | MS.gene06697:CDS |
| TATCAATGAAGTGGGCAGTT+AGG | 0.342841 | 3.3:+76423490 | None:intergenic |
| TTTAGAGTCATTGAGGGATT+GGG | 0.363471 | 3.3:-76423388 | MS.gene06697:CDS |
| ATCAATGAAGTGGGCAGTTA+GGG | 0.365154 | 3.3:+76423491 | None:intergenic |
| GGCAGAAACCGGAGAAGCTT+TGG | 0.383249 | 3.3:-76424457 | MS.gene06697:CDS |
| AACCATTGTAGCCACATCAT+TGG | 0.433510 | 3.3:+76423323 | None:intergenic |
| CTAAACACAACCTTTCTTGA+AGG | 0.439583 | 3.3:+76423636 | None:intergenic |
| ACAAGTGTCCAAAGCTTCTC+CGG | 0.453626 | 3.3:+76424449 | None:intergenic |
| TTTGAATACCCCTTCAAGAA+AGG | 0.454546 | 3.3:-76423646 | MS.gene06697:CDS |
| ATTGTGTCACCCGTGTGGTT+TGG | 0.454713 | 3.3:+76423423 | None:intergenic |
| TAAAAGATGGAGGCAGAAAC+CGG | 0.456738 | 3.3:-76424468 | None:intergenic |
| TCTAAAGCTACTGATGAAAC+AGG | 0.469935 | 3.3:+76423282 | None:intergenic |
| CTTGAAGGGGTATTCAAATG+AGG | 0.476544 | 3.3:+76423651 | None:intergenic |
| AACCACACGGGTGACACAAT+AGG | 0.486470 | 3.3:-76423420 | MS.gene06697:CDS |
| ATTGGACGAAGCATTGTTAA+CGG | 0.496491 | 3.3:+76423341 | None:intergenic |
| CCTAAAAGCATCACCTTGCA+AGG | 0.515004 | 3.3:+76423764 | None:intergenic |
| TAAACACAACCTTTCTTGAA+GGG | 0.523423 | 3.3:+76423637 | None:intergenic |
| TCCCTTCAGTATCAATGAAG+TGG | 0.525870 | 3.3:+76423481 | None:intergenic |
| TTAGAGTCATTGAGGGATTG+GGG | 0.541307 | 3.3:-76423387 | MS.gene06697:CDS |
| CCCTTCAGTATCAATGAAGT+GGG | 0.551659 | 3.3:+76423482 | None:intergenic |
| GCCCACTTCATTGATACTGA+AGG | 0.572131 | 3.3:-76423483 | MS.gene06697:CDS |
| TAGCATTCACTACCGACCGC+TGG | 0.579833 | 3.3:-76423542 | MS.gene06697:CDS |
| GTCCAATGATGTGGCTACAA+TGG | 0.588721 | 3.3:-76423325 | MS.gene06697:CDS |
| AAACACAACCTTTCTTGAAG+GGG | 0.592722 | 3.3:+76423638 | None:intergenic |
| CCCACTTCATTGATACTGAA+GGG | 0.608037 | 3.3:-76423482 | MS.gene06697:CDS |
| CAATGCTTCGTCCAATGATG+TGG | 0.608816 | 3.3:-76423334 | MS.gene06697:CDS |
| GCAGCTGTTGCACCCTTGCA+AGG | 0.611569 | 3.3:-76423777 | MS.gene06697:CDS |
| TACTATAGAAGTCCAGCGGT+CGG | 0.629469 | 3.3:+76423530 | None:intergenic |
| CTAAAAGCATCACCTTGCAA+GGG | 0.630736 | 3.3:+76423765 | None:intergenic |
| AGCTACTGATGAAACAGGTG+TGG | 0.636450 | 3.3:+76423287 | None:intergenic |
| TAGTTTAGTTCCAAACCACA+CGG | 0.642752 | 3.3:-76423433 | MS.gene06697:CDS |
| AGTTTAGTTCCAAACCACAC+GGG | 0.660320 | 3.3:-76423432 | MS.gene06697:CDS |
| TCAATGAAGTGGGCAGTTAG+GGG | 0.667038 | 3.3:+76423492 | None:intergenic |
| GACCTATTGTGTCACCCGTG+TGG | 0.681347 | 3.3:+76423418 | None:intergenic |
| AGTTTACTATAGAAGTCCAG+CGG | 0.728280 | 3.3:+76423526 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACTACTATTTTCATAATT+TGG | - | chr3.3:76423512-76423531 | MS.gene06697:CDS | 15.0% |
| !! | AATTGTTGAACATATCTTAA+AGG | + | chr3.3:76423798-76423817 | None:intergenic | 20.0% |
| !!! | AGTATGTTTTAATATGATTC+TGG | - | chr3.3:76423867-76423886 | MS.gene06697:intron | 20.0% |
| ! | AATAAAGATGTCATTGTATG+TGG | + | chr3.3:76423582-76423601 | None:intergenic | 25.0% |
| ! | AGCATATTAAAACTCATTGT+TGG | + | chr3.3:76423769-76423788 | None:intergenic | 25.0% |
| ! | TACAATGACATCTTTATTCA+TGG | - | chr3.3:76423584-76423603 | MS.gene06697:CDS | 25.0% |
| ! | TATGAAGTTGTTTGTTTGTA+TGG | - | chr3.3:76423307-76423326 | MS.gene06697:CDS | 25.0% |
| !! | AGCAAAAATTTGTTTCCAAA+CGG | - | chr3.3:76423626-76423645 | MS.gene06697:CDS | 25.0% |
| !! | TTTTCTCTTAAAATCAGCTA+TGG | - | chr3.3:76423678-76423697 | MS.gene06697:intron | 25.0% |
| !!! | AAAAAGTTTTAGAGTCATTG+AGG | - | chr3.3:76424297-76424316 | MS.gene06697:intron | 25.0% |
| !!! | AAAAGTTTTAGAGTCATTGA+GGG | - | chr3.3:76424298-76424317 | MS.gene06697:intron | 25.0% |
| AAGCTAGATTCAATCTACAT+AGG | + | chr3.3:76423436-76423455 | None:intergenic | 30.0% | |
| AGCACAGGAAATATCAAAAA+AGG | - | chr3.3:76424443-76424462 | MS.gene06697:intron | 30.0% | |
| AGTAAATGGAGTTACAACTA+TGG | - | chr3.3:76423705-76423724 | MS.gene06697:intron | 30.0% | |
| CTGAAGGGAAATATCAAAAA+AGG | - | chr3.3:76424225-76424244 | MS.gene06697:intron | 30.0% | |
| TAAACACAACCTTTCTTGAA+GGG | + | chr3.3:76424058-76424077 | None:intergenic | 30.0% | |
| TATTCAAATGAGGCTACAAA+TGG | + | chr3.3:76424034-76424053 | None:intergenic | 30.0% | |
| TGTTTGATCAAGTGTTCATT+AGG | - | chr3.3:76423392-76423411 | MS.gene06697:CDS | 30.0% | |
| TTCAAGAAAGGTTGTGTTTA+GGG | - | chr3.3:76424058-76424077 | MS.gene06697:intron | 30.0% | |
| ! | CTCTAAAAGGAAGTTTAGAA+AGG | + | chr3.3:76423977-76423996 | None:intergenic | 30.0% |
| ! | GATTGAATCTAGCTTATGTT+TGG | - | chr3.3:76423441-76423460 | MS.gene06697:CDS | 30.0% |
| ! | TACAATGGTTAGAGATGTTT+TGG | - | chr3.3:76424382-76424401 | MS.gene06697:intron | 30.0% |
| !!! | TGGATCTAGAGAAGTATTTT+GGG | + | chr3.3:76423562-76423581 | None:intergenic | 30.0% |
| AAACACAACCTTTCTTGAAG+GGG | + | chr3.3:76424057-76424076 | None:intergenic | 35.0% | |
| AAATGGAGTTACAACTATGG+AGG | - | chr3.3:76423708-76423727 | MS.gene06697:intron | 35.0% | |
| AATGGAGTTACAACTATGGA+GGG | - | chr3.3:76423709-76423728 | MS.gene06697:intron | 35.0% | |
| AGTTTACTATAGAAGTCCAG+CGG | + | chr3.3:76424169-76424188 | None:intergenic | 35.0% | |
| ATAGGACTAAACCACATTGA+AGG | + | chr3.3:76423418-76423437 | None:intergenic | 35.0% | |
| CTAAACACAACCTTTCTTGA+AGG | + | chr3.3:76424059-76424078 | None:intergenic | 35.0% | |
| CTCTTAAAATCAGCTATGGA+AGG | - | chr3.3:76423682-76423701 | MS.gene06697:intron | 35.0% | |
| CTTCAAGAAAGGTTGTGTTT+AGG | - | chr3.3:76424057-76424076 | MS.gene06697:intron | 35.0% | |
| TGAGACTCAACTACTCTAAA+AGG | + | chr3.3:76423990-76424009 | None:intergenic | 35.0% | |
| TTTGAATACCCCTTCAAGAA+AGG | - | chr3.3:76424046-76424065 | MS.gene06697:intron | 35.0% | |
| ! | AAACAAATTTTTGCTGCTGC+TGG | + | chr3.3:76423621-76423640 | None:intergenic | 35.0% |
| ! | TAGTTTAGTTCCAAACCACA+CGG | - | chr3.3:76424259-76424278 | MS.gene06697:intron | 35.0% |
| ! | TCTAAAGCTACTGATGAAAC+AGG | + | chr3.3:76424413-76424432 | None:intergenic | 35.0% |
| ! | TTGGACACTTGTAAGTTTTG+TGG | - | chr3.3:76423254-76423273 | MS.gene06697:CDS | 35.0% |
| ! | TTTAGAGTCATTGAGGGATT+GGG | - | chr3.3:76424304-76424323 | MS.gene06697:intron | 35.0% |
| !! | ATTGGACGAAGCATTGTTAA+CGG | + | chr3.3:76424354-76424373 | None:intergenic | 35.0% |
| !!! | GTGGATCTAGAGAAGTATTT+TGG | + | chr3.3:76423563-76423582 | None:intergenic | 35.0% |
| !!! | TTTTAGAGTCATTGAGGGAT+TGG | - | chr3.3:76424303-76424322 | MS.gene06697:intron | 35.0% |
| AACCATTGTAGCCACATCAT+TGG | + | chr3.3:76424372-76424391 | None:intergenic | 40.0% | |
| ATCAATGAAGTGGGCAGTTA+GGG | + | chr3.3:76424204-76424223 | None:intergenic | 40.0% | |
| ATGGAGTTACAACTATGGAG+GGG | - | chr3.3:76423710-76423729 | MS.gene06697:intron | 40.0% | |
| CCCACTTCATTGATACTGAA+GGG | - | chr3.3:76424210-76424229 | MS.gene06697:intron | 40.0% | |
| CCCTTCAGTATCAATGAAGT+GGG | + | chr3.3:76424213-76424232 | None:intergenic | 40.0% | |
| GTATGGCGTGTTCATATCTA+TGG | - | chr3.3:76423324-76423343 | MS.gene06697:CDS | 40.0% | |
| TATCAATGAAGTGGGCAGTT+AGG | + | chr3.3:76424205-76424224 | None:intergenic | 40.0% | |
| TCAGCTATGGAAGGAGTAAA+TGG | - | chr3.3:76423691-76423710 | MS.gene06697:intron | 40.0% | |
| TCCCTTCAGTATCAATGAAG+TGG | + | chr3.3:76424214-76424233 | None:intergenic | 40.0% | |
| TGTTCATTAGGCCTTCAATG+TGG | - | chr3.3:76423404-76423423 | MS.gene06697:CDS | 40.0% | |
| TTAGAGTCATTGAGGGATTG+GGG | - | chr3.3:76424305-76424324 | MS.gene06697:intron | 40.0% | |
| ! | AGTTTAGTTCCAAACCACAC+GGG | - | chr3.3:76424260-76424279 | MS.gene06697:intron | 40.0% |
| !! | CTAAAAGCATCACCTTGCAA+GGG | + | chr3.3:76423930-76423949 | None:intergenic | 40.0% |
| !! | CTTGAAGGGGTATTCAAATG+AGG | + | chr3.3:76424044-76424063 | None:intergenic | 40.0% |
| !!! | TTAGAGAGCATTTTCAGCAC+AGG | - | chr3.3:76424428-76424447 | MS.gene06697:intron | 40.0% |
| ACAAGTGTCCAAAGCTTCTC+CGG | + | chr3.3:76423246-76423265 | None:intergenic | 45.0% | |
| AGCTACTGATGAAACAGGTG+TGG | + | chr3.3:76424408-76424427 | None:intergenic | 45.0% | |
| CAATGCTTCGTCCAATGATG+TGG | - | chr3.3:76424358-76424377 | MS.gene06697:intron | 45.0% | |
| GCCCACTTCATTGATACTGA+AGG | - | chr3.3:76424209-76424228 | MS.gene06697:intron | 45.0% | |
| GTCCAATGATGTGGCTACAA+TGG | - | chr3.3:76424367-76424386 | MS.gene06697:intron | 45.0% | |
| TACTATAGAAGTCCAGCGGT+CGG | + | chr3.3:76424165-76424184 | None:intergenic | 45.0% | |
| TCAATGAAGTGGGCAGTTAG+GGG | + | chr3.3:76424203-76424222 | None:intergenic | 45.0% | |
| TCACACAGATAGTCACCGTT+TGG | + | chr3.3:76423644-76423663 | None:intergenic | 45.0% | |
| ! | CCTTGCAAGGTGATGCTTTT+AGG | - | chr3.3:76423928-76423947 | MS.gene06697:intron | 45.0% |
| !! | CCTAAAAGCATCACCTTGCA+AGG | + | chr3.3:76423931-76423950 | None:intergenic | 45.0% |
| !! | GCAAGGTGATGCTTTTAGGA+AGG | - | chr3.3:76423932-76423951 | MS.gene06697:intron | 45.0% |
| AACCACACGGGTGACACAAT+AGG | - | chr3.3:76424272-76424291 | MS.gene06697:intron | 50.0% | |
| ATTGTGTCACCCGTGTGGTT+TGG | + | chr3.3:76424272-76424291 | None:intergenic | 50.0% | |
| CATTGAGGGATTGGGGTCTT+AGG | - | chr3.3:76424312-76424331 | MS.gene06697:intron | 50.0% | |
| ! | ACTCAAGTTGCAGCAGCTAC+TGG | - | chr3.3:76423735-76423754 | MS.gene06697:intron | 50.0% |
| GACCTATTGTGTCACCCGTG+TGG | + | chr3.3:76424277-76424296 | None:intergenic | 55.0% | |
| GGCAGAAACCGGAGAAGCTT+TGG | - | chr3.3:76423235-76423254 | MS.gene06697:CDS | 55.0% | |
| TAGCATTCACTACCGACCGC+TGG | - | chr3.3:76424150-76424169 | MS.gene06697:intron | 55.0% | |
| GCAGCTGTTGCACCCTTGCA+AGG | - | chr3.3:76423915-76423934 | MS.gene06697:intron | 60.0% | |
| GTTGCAGCAGCTACTGGAGC+AGG | - | chr3.3:76423741-76423760 | MS.gene06697:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76423230 | 76424484 | 76423230 | ID=MS.gene06697 |
| chr3.3 | mRNA | 76423230 | 76424484 | 76423230 | ID=MS.gene06697.t1;Parent=MS.gene06697 |
| chr3.3 | exon | 76424451 | 76424484 | 76424451 | ID=MS.gene06697.t1.exon1;Parent=MS.gene06697.t1 |
| chr3.3 | CDS | 76424451 | 76424484 | 76424451 | ID=cds.MS.gene06697.t1;Parent=MS.gene06697.t1 |
| chr3.3 | exon | 76423746 | 76423819 | 76423746 | ID=MS.gene06697.t1.exon2;Parent=MS.gene06697.t1 |
| chr3.3 | CDS | 76423746 | 76423819 | 76423746 | ID=cds.MS.gene06697.t1;Parent=MS.gene06697.t1 |
| chr3.3 | exon | 76423230 | 76423673 | 76423230 | ID=MS.gene06697.t1.exon3;Parent=MS.gene06697.t1 |
| chr3.3 | CDS | 76423230 | 76423673 | 76423230 | ID=cds.MS.gene06697.t1;Parent=MS.gene06697.t1 |
| Gene Sequence |
| Protein sequence |
