Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55717.t1 | XP_013447071.1 | 97.8 | 648 | 14 | 0 | 18 | 665 | 89 | 736 | 0.00E+00 | 1253 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55717.t1 | Q38861 | 88.4 | 649 | 74 | 1 | 18 | 665 | 90 | 738 | 0.0e+00 | 1142.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55717.t1 | A0A072TW37 | 97.8 | 648 | 14 | 0 | 18 | 665 | 89 | 736 | 0.0e+00 | 1253.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene55717 | 0.820977 | 5.16E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene55717 | 0.844472 | 7.40E-59 | -1.69E-46 |
| MS.gene049435 | MS.gene55717 | 0.827683 | 1.37E-54 | -1.69E-46 |
| MS.gene049647 | MS.gene55717 | 0.810541 | 1.09E-50 | -1.69E-46 |
| MS.gene049801 | MS.gene55717 | 0.847334 | 1.24E-59 | -1.69E-46 |
| MS.gene050105 | MS.gene55717 | 0.823769 | 1.16E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene55717 | 0.823768 | 1.16E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene55717 | 0.81387 | 2.06E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene55717 | 0.823543 | 1.31E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene55717 | 0.833308 | 5.75E-56 | -1.69E-46 |
| MS.gene050605 | MS.gene55717 | 0.802176 | 6.35E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene55717 | -0.807703 | 4.44E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene55717 | 0.810312 | 1.23E-50 | -1.69E-46 |
| MS.gene050759 | MS.gene55717 | 0.828284 | 9.79E-55 | -1.69E-46 |
| MS.gene050762 | MS.gene55717 | 0.807489 | 4.93E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene55717 | 0.807632 | 4.60E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene55717 | 0.814193 | 1.75E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene55717 | 0.814138 | 1.79E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene55717 | 0.829682 | 4.49E-55 | -1.69E-46 |
| MS.gene051368 | MS.gene55717 | 0.822571 | 2.21E-53 | -1.69E-46 |
| MS.gene051800 | MS.gene55717 | 0.819751 | 9.85E-53 | -1.69E-46 |
| MS.gene05216 | MS.gene55717 | 0.83198 | 1.23E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene55717 | 0.838623 | 2.58E-57 | -1.69E-46 |
| MS.gene052389 | MS.gene55717 | 0.804532 | 2.06E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene55717 | 0.816388 | 5.67E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene55717 | 0.820128 | 8.08E-53 | -1.69E-46 |
| MS.gene052674 | MS.gene55717 | 0.856003 | 4.32E-62 | -1.69E-46 |
| MS.gene052675 | MS.gene55717 | 0.860149 | 2.53E-63 | -1.69E-46 |
| MS.gene052677 | MS.gene55717 | 0.864136 | 1.51E-64 | -1.69E-46 |
| MS.gene052954 | MS.gene55717 | 0.812917 | 3.33E-51 | -1.69E-46 |
| MS.gene052994 | MS.gene55717 | 0.801721 | 7.88E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene55717 | 0.83894 | 2.13E-57 | -1.69E-46 |
| MS.gene053201 | MS.gene55717 | 0.821232 | 4.51E-53 | -1.69E-46 |
| MS.gene053494 | MS.gene55717 | 0.805473 | 1.31E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene55717 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene55717 | 0.805237 | 1.47E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene55717 | 0.814826 | 1.26E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene55717 | 0.819975 | 8.76E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene55717 | 0.824366 | 8.39E-54 | -1.69E-46 |
| MS.gene05439 | MS.gene55717 | 0.802998 | 4.30E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene55717 | 0.813142 | 2.97E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene55717 | 0.835931 | 1.26E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene55717 | 0.870937 | 1.00E-66 | -1.69E-46 |
| MS.gene054576 | MS.gene55717 | 0.825471 | 4.60E-54 | -1.69E-46 |
| MS.gene054826 | MS.gene55717 | 0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene55717 | 0.814131 | 1.80E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene55717 | 0.816772 | 4.65E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene55717 | 0.816847 | 4.48E-52 | -1.69E-46 |
| MS.gene055367 | MS.gene55717 | 0.803597 | 3.23E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene55717 | 0.892876 | 1.06E-74 | -1.69E-46 |
| MS.gene055864 | MS.gene55717 | 0.81584 | 7.52E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene55717 | 0.830972 | 2.17E-55 | -1.69E-46 |
| MS.gene05595 | MS.gene55717 | 0.853433 | 2.40E-61 | -1.69E-46 |
| MS.gene056142 | MS.gene55717 | 0.801842 | 7.44E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene55717 | 0.804661 | 1.94E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene55717 | 0.831752 | 1.40E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene55717 | 0.841259 | 5.30E-58 | -1.69E-46 |
| MS.gene056779 | MS.gene55717 | 0.819158 | 1.34E-52 | -1.69E-46 |
| MS.gene056873 | MS.gene55717 | 0.832737 | 7.97E-56 | -1.69E-46 |
| MS.gene057156 | MS.gene55717 | -0.816857 | 4.45E-52 | -1.69E-46 |
| MS.gene057194 | MS.gene55717 | 0.82698 | 2.01E-54 | -1.69E-46 |
| MS.gene05761 | MS.gene55717 | 0.87386 | 1.06E-67 | -1.69E-46 |
| MS.gene057869 | MS.gene55717 | 0.839074 | 1.97E-57 | -1.69E-46 |
| MS.gene057929 | MS.gene55717 | 0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene55717 | 0.828537 | 8.51E-55 | -1.69E-46 |
| MS.gene058081 | MS.gene55717 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene058146 | MS.gene55717 | 0.822917 | 1.83E-53 | -1.69E-46 |
| MS.gene058223 | MS.gene55717 | -0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene058289 | MS.gene55717 | 0.845176 | 4.78E-59 | -1.69E-46 |
| MS.gene058429 | MS.gene55717 | 0.805179 | 1.51E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene55717 | 0.80702 | 6.20E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene55717 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene55717 | 0.805389 | 1.37E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene55717 | 0.825945 | 3.55E-54 | -1.69E-46 |
| MS.gene059550 | MS.gene55717 | 0.82721 | 1.77E-54 | -1.69E-46 |
| MS.gene059609 | MS.gene55717 | 0.802318 | 5.94E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene55717 | 0.82439 | 8.29E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene55717 | 0.855713 | 5.24E-62 | -1.69E-46 |
| MS.gene060084 | MS.gene55717 | 0.811013 | 8.65E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene55717 | 0.836359 | 9.80E-57 | -1.69E-46 |
| MS.gene060310 | MS.gene55717 | 0.803936 | 2.75E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene55717 | 0.806346 | 8.60E-50 | -1.69E-46 |
| MS.gene060400 | MS.gene55717 | 0.812026 | 5.21E-51 | -1.69E-46 |
| MS.gene060520 | MS.gene55717 | 0.824724 | 6.91E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene55717 | 0.838296 | 3.13E-57 | -1.69E-46 |
| MS.gene060637 | MS.gene55717 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene55717 | 0.840104 | 1.06E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene55717 | 0.83752 | 4.95E-57 | -1.69E-46 |
| MS.gene060802 | MS.gene55717 | 0.832306 | 1.02E-55 | -1.69E-46 |
| MS.gene060840 | MS.gene55717 | 0.80018 | 1.63E-48 | -1.69E-46 |
| MS.gene060850 | MS.gene55717 | 0.86327 | 2.81E-64 | -1.69E-46 |
| MS.gene060851 | MS.gene55717 | 0.85529 | 6.97E-62 | -1.69E-46 |
| MS.gene060852 | MS.gene55717 | 0.853041 | 3.11E-61 | -1.69E-46 |
| MS.gene060998 | MS.gene55717 | 0.85922 | 4.81E-63 | -1.69E-46 |
| MS.gene06121 | MS.gene55717 | 0.811972 | 5.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55717.t1 | MTR_8g098675 | 97.689 | 649 | 15 | 0 | 17 | 665 | 88 | 736 | 0.0 | 1321 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55717.t1 | AT5G41370 | 88.308 | 650 | 75 | 1 | 17 | 665 | 89 | 738 | 0.0 | 1159 |
| MS.gene55717.t1 | AT5G41360 | 87.692 | 650 | 78 | 2 | 17 | 665 | 89 | 737 | 0.0 | 1157 |
| MS.gene55717.t1 | AT5G41360 | 87.692 | 650 | 78 | 2 | 17 | 665 | 89 | 737 | 0.0 | 1156 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATGCTCGGAATTTATT+TGG | 0.143949 | 4.2:+6043904 | None:intergenic |
| CATGATTCTACTGCAAATTA+TGG | 0.163768 | 4.2:-6048250 | MS.gene55717:CDS |
| TGATCAAGGTTACAGCTTTA+AGG | 0.170987 | 4.2:-6042749 | MS.gene55717:intron |
| CTCCAACATGGGATAATTTA+AGG | 0.203128 | 4.2:+6046146 | None:intergenic |
| ACATATAATATGGTTGCTTT+TGG | 0.236023 | 4.2:-6044766 | MS.gene55717:CDS |
| AACACCAACTAGGGACTTTC+CGG | 0.270811 | 4.2:+6044963 | None:intergenic |
| CTAAGGCTCTTCTCTTGATA+TGG | 0.277696 | 4.2:+6045419 | None:intergenic |
| AGGCTTCACCTGTCTCTTCT+TGG | 0.278361 | 4.2:+6044233 | None:intergenic |
| ATGGGATAATTTAAGGCATT+TGG | 0.283714 | 4.2:+6046153 | None:intergenic |
| TTTAGTTCCATCTCGAGGTC+TGG | 0.295958 | 4.2:+6045461 | None:intergenic |
| CATACAGTTTGGGACCAATT+AGG | 0.307490 | 4.2:+6044370 | None:intergenic |
| CCAATTTGCCTCATACAGTT+TGG | 0.314774 | 4.2:+6044359 | None:intergenic |
| TGAATTATCACATTTGCTTC+AGG | 0.315902 | 4.2:+6043321 | None:intergenic |
| AATTGGTTGGATCTTGTAAA+AGG | 0.316540 | 4.2:-6044342 | MS.gene55717:CDS |
| TTCGCTGTATGCTGCGGTTT+CGG | 0.319268 | 4.2:-6048356 | MS.gene55717:CDS |
| AGCGTCTGGGTCGTATTCTT+AGG | 0.321135 | 4.2:-6043260 | MS.gene55717:CDS |
| ACAGATCTGAACTTCCTAAT+TGG | 0.321620 | 4.2:-6044384 | MS.gene55717:CDS |
| CATTGGTTTGCGGAGTTTCA+TGG | 0.328602 | 4.2:+6043798 | None:intergenic |
| TATTTGGATTCATCACATAA+AGG | 0.329096 | 4.2:+6043920 | None:intergenic |
| ATATGGCCGTGGTTGTGCTT+GGG | 0.332017 | 4.2:+6045436 | None:intergenic |
| CCAAACTGTATGAGGCAAAT+TGG | 0.337223 | 4.2:-6044359 | MS.gene55717:CDS |
| AACAGTATTTACGTCTTTGC+TGG | 0.343453 | 4.2:+6043632 | None:intergenic |
| ATTTGGATTCATCACATAAA+GGG | 0.355854 | 4.2:+6043921 | None:intergenic |
| AGAATGGGGATTGCTGCTTA+TGG | 0.362406 | 4.2:-6044692 | MS.gene55717:CDS |
| CTCCGCAAACCAATGATATA+TGG | 0.363195 | 4.2:-6043790 | MS.gene55717:CDS |
| AGCTTCCTAAAGAGATGATT+AGG | 0.364739 | 4.2:-6048279 | MS.gene55717:CDS |
| AAGAGCCTTAGTAAAATGTT+TGG | 0.369614 | 4.2:-6045407 | MS.gene55717:CDS |
| ATAAACCTAATCATCTCTTT+AGG | 0.372165 | 4.2:+6048274 | None:intergenic |
| TGTTGTGACAACATATAATA+TGG | 0.372226 | 4.2:-6044776 | MS.gene55717:CDS |
| TTGGTGTTTCAGCAGCTTCC+CGG | 0.376812 | 4.2:-6044948 | MS.gene55717:CDS |
| CATTTACACACCTCTGGAAA+TGG | 0.378477 | 4.2:+6048181 | None:intergenic |
| GCGTCAAGAAGCACAGCGTC+TGG | 0.379944 | 4.2:-6043274 | MS.gene55717:CDS |
| CCATCGCCGAGCCCGTTTGC+AGG | 0.382900 | 4.2:-6048499 | MS.gene55717:intron |
| CTTGTAGCACCATATATCAT+TGG | 0.385865 | 4.2:+6043781 | None:intergenic |
| CAATTTGCCTCATACAGTTT+GGG | 0.388906 | 4.2:+6044360 | None:intergenic |
| TAAATGGCAGGGAAAGCTTC+AGG | 0.390345 | 4.2:-6043005 | MS.gene55717:intron |
| CATAATTTGCAGTAGAATCA+TGG | 0.398414 | 4.2:+6048251 | None:intergenic |
| ATGATTCTACTGCAAATTAT+GGG | 0.406082 | 4.2:-6048249 | MS.gene55717:CDS |
| TTAGTTCCATCTCGAGGTCT+GGG | 0.406412 | 4.2:+6045462 | None:intergenic |
| CTTAGTAAAATGTTTGGAAA+TGG | 0.416991 | 4.2:-6045401 | MS.gene55717:intron |
| ACTAAATCTCACTGCAAACT+TGG | 0.417365 | 4.2:-6044528 | MS.gene55717:CDS |
| AGAAATAAGAAACAGAGAAT+GGG | 0.424172 | 4.2:-6044707 | MS.gene55717:CDS |
| GATATGGCCGTGGTTGTGCT+TGG | 0.426514 | 4.2:+6045435 | None:intergenic |
| TATCACCACGTGCCCTTTCG+TGG | 0.435050 | 4.2:+6043866 | None:intergenic |
| TCATCATCTCGATGATCAAC+TGG | 0.437109 | 4.2:-6041351 | MS.gene55717:CDS |
| AAGAAATAAGAAACAGAGAA+TGG | 0.440448 | 4.2:-6044708 | MS.gene55717:CDS |
| TGCTGTCTCTGTGGATCAGT+GGG | 0.446657 | 4.2:-6044893 | MS.gene55717:CDS |
| TTTGTACCTGCAAACGGGCT+CGG | 0.455277 | 4.2:+6048493 | None:intergenic |
| AATCATCTCTTTAGGAAGCT+TGG | 0.456652 | 4.2:+6048282 | None:intergenic |
| CACTGCAAACTTGGGCTCAC+AGG | 0.460451 | 4.2:-6044519 | MS.gene55717:intron |
| AATTGGTCCCAAACTGTATG+AGG | 0.461446 | 4.2:-6044367 | MS.gene55717:CDS |
| TCTCTTCACATGCTGGTTCA+AGG | 0.464065 | 4.2:-6043296 | MS.gene55717:CDS |
| ATGTACAGTGTGCTGAAGTA+TGG | 0.466560 | 4.2:-6044305 | MS.gene55717:CDS |
| CAAATCTAGATTACCTGAGC+AGG | 0.474858 | 4.2:+6047357 | None:intergenic |
| ACCTATCAGGTATTGAATGC+TGG | 0.476448 | 4.2:-6041252 | MS.gene55717:intron |
| TTCTCATAAATTACCACGAA+AGG | 0.478217 | 4.2:-6043879 | MS.gene55717:CDS |
| ATAGTTCTACCTTGTGGTGC+CGG | 0.479656 | 4.2:-6044982 | MS.gene55717:CDS |
| AGGTATTGAAGACATTGCTC+AGG | 0.488409 | 4.2:-6048079 | MS.gene55717:CDS |
| CTCTTCTCTTGATATGGCCG+TGG | 0.488835 | 4.2:+6045425 | None:intergenic |
| AGTGCAATGTCAGGTGCAAA+AGG | 0.493706 | 4.2:-6041144 | MS.gene55717:CDS |
| CTGTATGCTGCGGTTTCGGT+TGG | 0.496346 | 4.2:-6048352 | MS.gene55717:CDS |
| GCGTCTGGGTCGTATTCTTA+GGG | 0.498202 | 4.2:-6043259 | MS.gene55717:CDS |
| ATTCAGATCTCTTCACATGC+TGG | 0.501954 | 4.2:-6043303 | MS.gene55717:CDS |
| GTTTAGGGTACTCATGGAGA+TGG | 0.502400 | 4.2:-6047495 | MS.gene55717:intron |
| CAATGATATATGGTGCTACA+AGG | 0.508056 | 4.2:-6043780 | MS.gene55717:intron |
| GGATGGTTTATGTGGAGTAC+AGG | 0.509532 | 4.2:-6041122 | None:intergenic |
| TGGTTGGATCTTGTAAAAGG+TGG | 0.512861 | 4.2:-6044339 | MS.gene55717:CDS |
| AACGGCATATTTGTTCATCT+CGG | 0.521437 | 4.2:+6044842 | None:intergenic |
| GGATCGATGAGTGCAATGTC+AGG | 0.522160 | 4.2:-6041153 | MS.gene55717:CDS |
| TCTCATAAATTACCACGAAA+GGG | 0.522463 | 4.2:-6043878 | MS.gene55717:CDS |
| ACTGTATGAGGCAAATTGGT+TGG | 0.524427 | 4.2:-6044355 | MS.gene55717:CDS |
| ATAAATCTGTACCTGGGTAT+CGG | 0.525157 | 4.2:+6042925 | None:intergenic |
| TAAGAAGAATCGTTACTATG+TGG | 0.527424 | 4.2:-6048209 | MS.gene55717:CDS |
| CTTTGCTGTCAGATGTGAAA+CGG | 0.530400 | 4.2:+6044824 | None:intergenic |
| TGCCTTAAATTATCCCATGT+TGG | 0.531333 | 4.2:-6046148 | MS.gene55717:CDS |
| GAGAGATTCCGTGGTAACGC+TGG | 0.532353 | 4.2:-6044802 | MS.gene55717:CDS |
| TGCAGCTACACTTGTGAGAG+AGG | 0.532637 | 4.2:-6044418 | MS.gene55717:intron |
| AAAAGTGCTCGTCGTTCTCA+AGG | 0.533168 | 4.2:-6041174 | MS.gene55717:CDS |
| AAGCTGCTGAAACACCAACT+AGG | 0.535810 | 4.2:+6044953 | None:intergenic |
| AAGCTTCAGGATAGGATGGC+TGG | 0.541968 | 4.2:-6042992 | MS.gene55717:CDS |
| CCTGCAAACGGGCTCGGCGA+TGG | 0.542090 | 4.2:+6048499 | None:intergenic |
| GAAATAAGAAACAGAGAATG+GGG | 0.543248 | 4.2:-6044706 | MS.gene55717:CDS |
| TGCAAAAGGGATGGTTTATG+TGG | 0.544520 | 4.2:-6041130 | MS.gene55717:CDS |
| AGAGAACTCCAAGAAGAGAC+AGG | 0.548803 | 4.2:-6044241 | MS.gene55717:intron |
| AGCTTGCCTCCATCTGATGA+AGG | 0.551771 | 4.2:-6041389 | MS.gene55717:CDS |
| CCTGGGTATCGGTCGACACA+AGG | 0.553236 | 4.2:+6042936 | None:intergenic |
| ATGCTGTCTCTGTGGATCAG+TGG | 0.555068 | 4.2:-6044894 | MS.gene55717:CDS |
| CACCATATATCATTGGTTTG+CGG | 0.555102 | 4.2:+6043788 | None:intergenic |
| ATTCGAAATTGATCCTGCTC+AGG | 0.555292 | 4.2:-6047370 | MS.gene55717:intron |
| CGTCAAGAAGCACAGCGTCT+GGG | 0.556542 | 4.2:-6043273 | MS.gene55717:CDS |
| CCTTGTGTCGACCGATACCC+AGG | 0.557821 | 4.2:-6042936 | MS.gene55717:intron |
| GCGGAGTTTCATGGCATACT+CGG | 0.559802 | 4.2:+6043807 | None:intergenic |
| CTAAATCTCACTGCAAACTT+GGG | 0.561239 | 4.2:-6044527 | MS.gene55717:CDS |
| ACAAGGTAGAACTATGATAC+CGG | 0.568352 | 4.2:+6044990 | None:intergenic |
| AAGTCATACTCCTCCAACAT+GGG | 0.569092 | 4.2:+6046135 | None:intergenic |
| TATGGCCGTGGTTGTGCTTG+GGG | 0.571603 | 4.2:+6045437 | None:intergenic |
| TTATGAGAAACTCACATGCT+CGG | 0.574806 | 4.2:+6043893 | None:intergenic |
| AGCTGCTGAAACACCAACTA+GGG | 0.575072 | 4.2:+6044954 | None:intergenic |
| CCTTCAGGTAGAGCAAGATC+CGG | 0.580416 | 4.2:-6045009 | MS.gene55717:intron |
| TCATAAGCTTGTTTGTACAA+AGG | 0.583537 | 4.2:+6048533 | None:intergenic |
| GGGATTGCTGCTTATGGACG+AGG | 0.585259 | 4.2:-6044686 | MS.gene55717:intron |
| GGGTCGTATTCTTAGGGCAA+AGG | 0.588925 | 4.2:-6043253 | MS.gene55717:intron |
| AGATGTATTACTCAACTAAG+AGG | 0.589026 | 4.2:-6042786 | MS.gene55717:CDS |
| GGGAAAGCTTCAGGATAGGA+TGG | 0.590165 | 4.2:-6042996 | MS.gene55717:CDS |
| ACCGCATTCGCTGTATGCTG+CGG | 0.590897 | 4.2:-6048362 | MS.gene55717:CDS |
| AATGCTGGTGATGATGCAGT+TGG | 0.591042 | 4.2:-6041237 | MS.gene55717:CDS |
| TTATTTGCAGCCATGTTGAG+AGG | 0.593332 | 4.2:-6043680 | MS.gene55717:intron |
| GATGATCAACTGGCACTACT+CGG | 0.594721 | 4.2:-6041341 | MS.gene55717:CDS |
| CTTAAATTATCCCATGTTGG+AGG | 0.600247 | 4.2:-6046145 | MS.gene55717:CDS |
| AAAGCACTAGGTGAGATTGA+AGG | 0.606763 | 4.2:-6047459 | MS.gene55717:CDS |
| TTTACAATCAGCAAAGCACT+AGG | 0.610051 | 4.2:-6047471 | MS.gene55717:CDS |
| GGTGCCGGAAAGTCCCTAGT+TGG | 0.612274 | 4.2:-6044967 | MS.gene55717:CDS |
| TAAAGCCCCAAGCACAACCA+CGG | 0.615153 | 4.2:-6045442 | MS.gene55717:CDS |
| GGCAACAAATGCTGTCTCTG+TGG | 0.616726 | 4.2:-6044902 | MS.gene55717:CDS |
| GGGGCTTTAGTTCCATCTCG+AGG | 0.618388 | 4.2:+6045456 | None:intergenic |
| AAGCGAGATCCTTCATCAGA+TGG | 0.620834 | 4.2:+6041380 | None:intergenic |
| AATGTCAGGTGCAAAAGGGA+TGG | 0.623263 | 4.2:-6041139 | MS.gene55717:CDS |
| ATGATGCTATATCGCGAGCA+AGG | 0.624247 | 4.2:-6048055 | MS.gene55717:CDS |
| ACCGCAGCATACAGCGAATG+CGG | 0.628106 | 4.2:+6048361 | None:intergenic |
| TCAACTGGCACTACTCGGAA+AGG | 0.628539 | 4.2:-6041336 | MS.gene55717:intron |
| CAACAACTCCAGCGTTACCA+CGG | 0.635366 | 4.2:+6044794 | None:intergenic |
| TAGGATGGCTGGTGGCAAAG+AGG | 0.635488 | 4.2:-6042981 | MS.gene55717:CDS |
| GAAGTCATACTCCTCCAACA+TGG | 0.636793 | 4.2:+6046134 | None:intergenic |
| GGCAGGGAAAGCTTCAGGAT+AGG | 0.638026 | 4.2:-6043000 | MS.gene55717:intron |
| GGTGAACCCAGACCTCGAGA+TGG | 0.640415 | 4.2:-6045468 | MS.gene55717:CDS |
| GCGAGCAAGGATCACTTCTG+AGG | 0.642760 | 4.2:-6048042 | MS.gene55717:intron |
| GGTATCATAGTTCTACCTTG+TGG | 0.642998 | 4.2:-6044988 | MS.gene55717:CDS |
| GGTATTGAAGACATTGCTCA+GGG | 0.645900 | 4.2:-6048078 | MS.gene55717:CDS |
| CGAGATCCTTCATCAGATGG+AGG | 0.648662 | 4.2:+6041383 | None:intergenic |
| GCATGATAAACAGGTGCACG+TGG | 0.651390 | 4.2:-6044586 | MS.gene55717:intron |
| GTGCAATGTCAGGTGCAAAA+GGG | 0.652794 | 4.2:-6041143 | MS.gene55717:CDS |
| GACAGCAAAGAGAGATTCCG+TGG | 0.654068 | 4.2:-6044811 | MS.gene55717:CDS |
| AGGGACTTTCCGGCACCACA+AGG | 0.657347 | 4.2:+6044973 | None:intergenic |
| AGAAAGTCTCAAGGAAAATG+CGG | 0.658900 | 4.2:+6048558 | None:intergenic |
| CTGGGTATCGGTCGACACAA+GGG | 0.670656 | 4.2:+6042937 | None:intergenic |
| ACAAAGGTGAGAAAGTCTCA+AGG | 0.672300 | 4.2:+6048549 | None:intergenic |
| GCTAAATCAAGCAGAAGTAG+CGG | 0.672882 | 4.2:-6047421 | MS.gene55717:CDS |
| AATTACCACGAAAGGGCACG+TGG | 0.685034 | 4.2:-6043871 | MS.gene55717:CDS |
| TGTGGAATCTCCATTTCCAG+AGG | 0.687355 | 4.2:-6048191 | MS.gene55717:intron |
| CTTCAGGATAGGATGGCTGG+TGG | 0.687755 | 4.2:-6042989 | MS.gene55717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6041123 | 6048584 | 6041123 | ID=MS.gene55717 |
| chr4.2 | mRNA | 6041123 | 6048584 | 6041123 | ID=MS.gene55717.t1;Parent=MS.gene55717 |
| chr4.2 | exon | 6048500 | 6048584 | 6048500 | ID=MS.gene55717.t1.exon1;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6048500 | 6048584 | 6048500 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6048192 | 6048409 | 6048192 | ID=MS.gene55717.t1.exon2;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6048192 | 6048409 | 6048192 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6048043 | 6048099 | 6048043 | ID=MS.gene55717.t1.exon3;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6048043 | 6048099 | 6048043 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6047371 | 6047511 | 6047371 | ID=MS.gene55717.t1.exon4;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6047371 | 6047511 | 6047371 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6046122 | 6046202 | 6046122 | ID=MS.gene55717.t1.exon5;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6046122 | 6046202 | 6046122 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6045402 | 6045489 | 6045402 | ID=MS.gene55717.t1.exon6;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6045402 | 6045489 | 6045402 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6044687 | 6045024 | 6044687 | ID=MS.gene55717.t1.exon7;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6044687 | 6045024 | 6044687 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6044520 | 6044595 | 6044520 | ID=MS.gene55717.t1.exon8;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6044520 | 6044595 | 6044520 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6044242 | 6044435 | 6044242 | ID=MS.gene55717.t1.exon9;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6044242 | 6044435 | 6044242 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6043781 | 6043944 | 6043781 | ID=MS.gene55717.t1.exon10;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6043781 | 6043944 | 6043781 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6043620 | 6043692 | 6043620 | ID=MS.gene55717.t1.exon11;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6043620 | 6043692 | 6043620 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6043254 | 6043367 | 6043254 | ID=MS.gene55717.t1.exon12;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6043254 | 6043367 | 6043254 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6042937 | 6043017 | 6042937 | ID=MS.gene55717.t1.exon13;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6042937 | 6043017 | 6042937 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6042750 | 6042809 | 6042750 | ID=MS.gene55717.t1.exon14;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6042750 | 6042809 | 6042750 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6041337 | 6041420 | 6041337 | ID=MS.gene55717.t1.exon15;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6041337 | 6041420 | 6041337 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| chr4.2 | exon | 6041123 | 6041265 | 6041123 | ID=MS.gene55717.t1.exon16;Parent=MS.gene55717.t1 |
| chr4.2 | CDS | 6041123 | 6041265 | 6041123 | ID=cds.MS.gene55717.t1;Parent=MS.gene55717.t1 |
| Gene Sequence |
| Protein sequence |
