Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056398.t1 | XP_024638645.1 | 91.5 | 727 | 46 | 2 | 1 | 725 | 1 | 713 | 0.00E+00 | 1234.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056398.t1 | G7JEV5 | 91.1 | 727 | 63 | 1 | 1 | 725 | 1 | 727 | 0.0e+00 | 1223.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053144 | MS.gene056398 | 0.8033 | 3.72E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene056398 | 0.803439 | 3.48E-49 | -1.69E-46 |
| MS.gene056398 | MS.gene070339 | 0.834452 | 2.97E-56 | -1.69E-46 |
| MS.gene056398 | MS.gene08769 | 0.837707 | 4.43E-57 | -1.69E-46 |
| MS.gene056398 | MS.gene09087 | 0.81682 | 4.54E-52 | -1.69E-46 |
| MS.gene056398 | MS.gene26387 | 0.804588 | 2.01E-49 | -1.69E-46 |
| MS.gene056398 | MS.gene28324 | 0.966077 | 1.93E-125 | -1.69E-46 |
| MS.gene056398 | MS.gene32853 | 0.838915 | 2.17E-57 | -1.69E-46 |
| MS.gene056398 | MS.gene34286 | 0.805104 | 1.57E-49 | -1.69E-46 |
| MS.gene056398 | MS.gene37459 | 0.831531 | 1.58E-55 | -1.69E-46 |
| MS.gene056398 | MS.gene38303 | 0.810054 | 1.39E-50 | -1.69E-46 |
| MS.gene056398 | MS.gene41692 | 0.812307 | 4.53E-51 | -1.69E-46 |
| MS.gene056398 | MS.gene60369 | 0.812857 | 3.43E-51 | -1.69E-46 |
| MS.gene056398 | MS.gene60370 | 0.812375 | 4.38E-51 | -1.69E-46 |
| MS.gene056398 | MS.gene68107 | 0.810829 | 9.49E-51 | -1.69E-46 |
| MS.gene056398 | MS.gene68420 | 0.813121 | 3.01E-51 | -1.69E-46 |
| MS.gene056398 | MS.gene72170 | 0.864688 | 1.02E-64 | -1.69E-46 |
| MS.gene056398 | MS.gene72930 | 0.822701 | 2.06E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056398.t1 | MTR_4g068050 | 96.011 | 727 | 27 | 1 | 1 | 725 | 1 | 727 | 0.0 | 1424 |
| MS.gene056398.t1 | MTR_2g099095 | 62.681 | 761 | 209 | 17 | 1 | 718 | 1 | 729 | 0.0 | 817 |
| MS.gene056398.t1 | MTR_0050s0010 | 63.025 | 119 | 44 | 0 | 1 | 119 | 1 | 119 | 1.16e-47 | 177 |
| MS.gene056398.t1 | MTR_0050s0010 | 35.833 | 120 | 60 | 3 | 608 | 712 | 412 | 529 | 4.04e-12 | 69.7 |
| MS.gene056398.t1 | MTR_5g034370 | 57.025 | 121 | 51 | 1 | 1 | 120 | 1 | 121 | 1.99e-41 | 160 |
| MS.gene056398.t1 | MTR_4g112035 | 56.667 | 120 | 52 | 0 | 1 | 120 | 1 | 120 | 4.72e-40 | 157 |
| MS.gene056398.t1 | MTR_2g062300 | 31.680 | 363 | 196 | 13 | 369 | 711 | 254 | 584 | 9.91e-37 | 146 |
| MS.gene056398.t1 | MTR_2g062300 | 46.825 | 126 | 61 | 2 | 1 | 124 | 1 | 122 | 1.75e-26 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056398.t1 | AT1G08760 | 51.747 | 744 | 298 | 17 | 1 | 706 | 1 | 721 | 0.0 | 677 |
| MS.gene056398.t1 | AT3G14170 | 61.345 | 119 | 46 | 0 | 1 | 119 | 1 | 119 | 2.78e-45 | 170 |
| MS.gene056398.t1 | AT3G14170 | 35.338 | 133 | 69 | 3 | 594 | 712 | 374 | 503 | 4.94e-13 | 72.8 |
| MS.gene056398.t1 | AT3G14170 | 34.831 | 89 | 58 | 0 | 384 | 472 | 250 | 338 | 1.66e-12 | 70.9 |
| MS.gene056398.t1 | AT3G14170 | 61.345 | 119 | 46 | 0 | 1 | 119 | 1 | 119 | 2.92e-45 | 169 |
| MS.gene056398.t1 | AT3G14170 | 35.338 | 133 | 69 | 3 | 594 | 712 | 375 | 504 | 5.31e-13 | 72.4 |
| MS.gene056398.t1 | AT3G14170 | 34.831 | 89 | 58 | 0 | 384 | 472 | 251 | 339 | 1.82e-12 | 70.9 |
| MS.gene056398.t1 | AT4G13370 | 58.400 | 125 | 52 | 0 | 1 | 125 | 1 | 125 | 3.04e-42 | 164 |
| MS.gene056398.t1 | AT4G13370 | 28.135 | 327 | 160 | 6 | 382 | 707 | 413 | 665 | 2.23e-23 | 105 |
| MS.gene056398.t1 | AT1G23790 | 57.377 | 122 | 51 | 1 | 1 | 121 | 1 | 122 | 3.50e-41 | 158 |
| MS.gene056398.t1 | AT1G70340 | 57.500 | 120 | 50 | 1 | 1 | 119 | 1 | 120 | 1.26e-39 | 154 |
| MS.gene056398.t1 | AT3G19610 | 48.333 | 120 | 61 | 1 | 1 | 119 | 29 | 148 | 7.14e-36 | 144 |
| MS.gene056398.t1 | AT3G19610 | 27.108 | 332 | 174 | 9 | 390 | 709 | 335 | 610 | 2.25e-22 | 102 |
| MS.gene056398.t1 | AT2G31920 | 44.697 | 132 | 64 | 4 | 1 | 124 | 1 | 131 | 1.73e-25 | 112 |
| MS.gene056398.t1 | AT2G31920 | 27.300 | 337 | 191 | 11 | 376 | 708 | 284 | 570 | 2.42e-21 | 99.4 |
Find 137 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCAAAAGATTGTTCT+TGG | 0.220021 | 4.1:+33885730 | MS.gene056398:CDS |
| TGAAACCTTGACAAAGTTTC+CGG | 0.253676 | 4.1:-33884157 | None:intergenic |
| GTTGTGATTCTTTCATTATC+TGG | 0.256643 | 4.1:-33885559 | None:intergenic |
| CCACTCCAAGAGTGGATTAA+AGG | 0.275711 | 4.1:+33885916 | MS.gene056398:CDS |
| CTTACTGTGCTACGAAATTC+AGG | 0.277895 | 4.1:-33883482 | None:intergenic |
| CTTAGAAGATGCCCTTGATT+TGG | 0.289921 | 4.1:-33883447 | None:intergenic |
| ATAGTTTGCTACAATGTCTT+AGG | 0.295406 | 4.1:+33884812 | MS.gene056398:CDS |
| AAATCATCCGCGCACTATTC+AGG | 0.311812 | 4.1:-33885498 | None:intergenic |
| CGTGGTGTTAGGCCTGTTCC+TGG | 0.317826 | 4.1:+33882876 | MS.gene056398:CDS |
| TCTTCAGAAGCCGGACTTCC+CGG | 0.331048 | 4.1:+33884138 | MS.gene056398:CDS |
| TAGCAATGCTTCTGAGGTTA+AGG | 0.340241 | 4.1:+33882959 | MS.gene056398:CDS |
| TGATTCTCCAACACTTTCAT+TGG | 0.340325 | 4.1:-33883014 | None:intergenic |
| AGTTCCTTGTAAGGCTTGTT+TGG | 0.347179 | 4.1:-33885839 | None:intergenic |
| AAAATGGCAAATCTAGTTCC+TGG | 0.348238 | 4.1:+33882576 | None:intergenic |
| TTACTCTCGTAATCTTTAGA+AGG | 0.353943 | 4.1:-33883985 | None:intergenic |
| CACTTTCATTGGAGAGGACT+TGG | 0.357255 | 4.1:-33883003 | None:intergenic |
| TCCACTCTTGGAGTGGTTGT+TGG | 0.358763 | 4.1:-33885909 | None:intergenic |
| TCAATCAGAAATTTAGTTCA+AGG | 0.364637 | 4.1:+33883350 | MS.gene056398:CDS |
| ACGAAGCAAAGGAACTCTTT+TGG | 0.370193 | 4.1:+33884108 | MS.gene056398:CDS |
| GGAGATTTGTTTACAAATCA+AGG | 0.381180 | 4.1:+33882705 | MS.gene056398:CDS |
| ATTAGATCATCATGTTCATC+AGG | 0.391695 | 4.1:-33882777 | None:intergenic |
| TTCCGATTCTTCGTGGTGTT+AGG | 0.393778 | 4.1:+33882865 | MS.gene056398:CDS |
| CATTTCCTTTAATCCACTCT+TGG | 0.393945 | 4.1:-33885921 | None:intergenic |
| GGATGAGAGATTGGTGGATA+AGG | 0.407044 | 4.1:-33885644 | None:intergenic |
| AACACCAACCAAGTCCTCTA+AGG | 0.411554 | 4.1:+33884014 | MS.gene056398:CDS |
| CTTAGTGACAAGATTCAGTT+AGG | 0.416620 | 4.1:+33882801 | MS.gene056398:CDS |
| GACAAAGTTTCCGGGAAGTC+CGG | 0.419326 | 4.1:-33884148 | None:intergenic |
| AGTTAACGGTGATGGAACTA+TGG | 0.422657 | 4.1:+33884068 | MS.gene056398:CDS |
| GAATTACTTGTAGTTGAAAC+AGG | 0.432215 | 4.1:-33885706 | None:intergenic |
| GAGAATTTCTCAAAAGAAGT+AGG | 0.433004 | 4.1:-33883200 | None:intergenic |
| CTTCTGAGGTTAAGGTTAAG+AGG | 0.436051 | 4.1:+33882967 | MS.gene056398:CDS |
| CCTTCATCTATTGCGAAGCT+TGG | 0.438351 | 4.1:+33884228 | MS.gene056398:CDS |
| CTAAGGCGTTGCGGAAAAGC+TGG | 0.438960 | 4.1:+33883387 | MS.gene056398:CDS |
| AACAGAAAAGGATGAGAGAT+TGG | 0.439259 | 4.1:-33885653 | None:intergenic |
| TGTTTGGAATTAGCTACTGC+TGG | 0.443115 | 4.1:-33885823 | None:intergenic |
| GAAACCTTGACAAAGTTTCC+GGG | 0.443615 | 4.1:-33884156 | None:intergenic |
| TTTGCGCGGAGTTCCTTGTA+AGG | 0.448101 | 4.1:-33885848 | None:intergenic |
| GGGGTGGTGGAGACGGGAAA+GGG | 0.448470 | 4.1:+33883281 | MS.gene056398:CDS |
| TTAGTTGCAACAATATCTTC+AGG | 0.451042 | 4.1:-33882921 | None:intergenic |
| ATTCTGAGGGTTATGTTCCT+TGG | 0.451057 | 4.1:-33885443 | None:intergenic |
| ATAAAGAGACATCCAAATCA+AGG | 0.456508 | 4.1:+33883435 | MS.gene056398:CDS |
| AAATCTATAAAGAAAGTTAA+CGG | 0.457905 | 4.1:+33884054 | MS.gene056398:CDS |
| TGCAATTGCGATCGCGAGAC+TGG | 0.462113 | 4.1:+33885977 | MS.gene056398:CDS |
| CTTCATCTATTGCGAAGCTT+GGG | 0.468822 | 4.1:+33884229 | MS.gene056398:CDS |
| GGAAAGAAATCTTCAGAAGC+CGG | 0.471468 | 4.1:+33884129 | MS.gene056398:CDS |
| GGCCTAACACCACGAAGAAT+CGG | 0.472446 | 4.1:-33882867 | None:intergenic |
| TTATCTGGAGATGAACCATC+TGG | 0.472677 | 4.1:-33885544 | None:intergenic |
| AACTTAAAAGCGTCAACGAT+TGG | 0.476478 | 4.1:+33886085 | MS.gene056398:CDS |
| TCGCCTGTTCCGATTCTTCG+TGG | 0.478185 | 4.1:+33882858 | MS.gene056398:CDS |
| CTAAATTAACCGCCGCATCA+AGG | 0.478940 | 4.1:-33885945 | None:intergenic |
| CAAGCATGTCTCCCAGGAAC+AGG | 0.480995 | 4.1:-33882888 | None:intergenic |
| AACTGATCAATTGTATTCTG+AGG | 0.483206 | 4.1:-33885457 | None:intergenic |
| CATCTATTGCGAAGCTTGGG+AGG | 0.483470 | 4.1:+33884232 | MS.gene056398:CDS |
| TGTAGTTGAAACAGGAAGCT+TGG | 0.485663 | 4.1:-33885698 | None:intergenic |
| CTCTCGGTTATAAACAGAAA+AGG | 0.486637 | 4.1:-33885665 | None:intergenic |
| GACGCTTCATTGAAAGCTCA+TGG | 0.489464 | 4.1:+33885790 | MS.gene056398:CDS |
| TAGCAACTAGTAGGTGAAGA+AGG | 0.490380 | 4.1:-33883170 | None:intergenic |
| TCAAACAATGGTCAAATAGC+AGG | 0.495685 | 4.1:+33886051 | MS.gene056398:CDS |
| CTCCAACACTTTCATTGGAG+AGG | 0.497923 | 4.1:-33883009 | None:intergenic |
| CCAAGCTTCGCAATAGATGA+AGG | 0.500292 | 4.1:-33884228 | None:intergenic |
| ATGATTGTGAGTCAGAAGTA+AGG | 0.502497 | 4.1:-33886233 | None:intergenic |
| GTTCGCGGAGTTAGTCCTCT+CGG | 0.502784 | 4.1:+33883305 | MS.gene056398:CDS |
| TTCTGGTGTTCCAGACTCCT+AGG | 0.504156 | 4.1:+33883938 | MS.gene056398:intron |
| TGACAGAAGCAAGTGTTCAA+TGG | 0.504746 | 4.1:+33884196 | MS.gene056398:CDS |
| GGATAGGCTGATTGCTAAGG+TGG | 0.505127 | 4.1:+33883259 | MS.gene056398:CDS |
| AAATCTCCACCTGCTAGTGC+TGG | 0.505213 | 4.1:-33882690 | None:intergenic |
| GGCAAAGAATAGCAACTAGT+AGG | 0.507800 | 4.1:-33883179 | None:intergenic |
| AAATGGCAAATCTAGTTCCT+GGG | 0.508006 | 4.1:+33882577 | None:intergenic |
| CCTTTAATCCACTCTTGGAG+TGG | 0.512337 | 4.1:-33885916 | None:intergenic |
| CTAACTGAATCTTGTCACTA+AGG | 0.514275 | 4.1:-33882800 | None:intergenic |
| GCACAGAGATGCAGCACAGA+TGG | 0.515070 | 4.1:+33884753 | MS.gene056398:CDS |
| TTAGTTCAAGGAATTGAACT+TGG | 0.515121 | 4.1:+33883362 | MS.gene056398:CDS |
| TAAAAGCGTCAACGATTGGT+TGG | 0.515601 | 4.1:+33886089 | MS.gene056398:CDS |
| AAGCAACAAGGAAATATCAA+TGG | 0.517246 | 4.1:+33883233 | MS.gene056398:CDS |
| TCTTCCTTAGAGGACTTGGT+TGG | 0.518185 | 4.1:-33884018 | None:intergenic |
| ATAAAGAAAGTTAACGGTGA+TGG | 0.518959 | 4.1:+33884060 | MS.gene056398:CDS |
| ACACCACGAAGAATCGGAAC+AGG | 0.519947 | 4.1:-33882861 | None:intergenic |
| TTGGACAGTGATGGAGACAT+TGG | 0.524679 | 4.1:+33886024 | MS.gene056398:CDS |
| AATTCCAAACAAGCCTTACA+AGG | 0.526341 | 4.1:+33885835 | MS.gene056398:CDS |
| GAGACGGGAAAGGGTGTTCG+CGG | 0.527317 | 4.1:+33883290 | MS.gene056398:CDS |
| AGCATTGTTCCAGCACTAGC+AGG | 0.527702 | 4.1:+33882681 | MS.gene056398:CDS |
| AGGAATTGAACTTGGTGCTA+AGG | 0.528575 | 4.1:+33883370 | MS.gene056398:CDS |
| AAGAAAAGACAACGAAGCAA+AGG | 0.535441 | 4.1:+33884097 | MS.gene056398:CDS |
| AGTCTATCAATTGTCTCTAC+CGG | 0.535694 | 4.1:-33886156 | None:intergenic |
| TTCGCGGAGTTAGTCCTCTC+GGG | 0.536295 | 4.1:+33883306 | MS.gene056398:CDS |
| ACAAGTAGATAAGAAATCAA+TGG | 0.541333 | 4.1:+33883043 | MS.gene056398:CDS |
| CAAGGAACTCCGCGCAAACA+AGG | 0.543841 | 4.1:+33885853 | MS.gene056398:CDS |
| AACGATTGGTTGGATGAGAT+AGG | 0.546451 | 4.1:+33886099 | MS.gene056398:CDS |
| CCTGGGAGACATGCTTGTGT+TGG | 0.547891 | 4.1:+33882894 | MS.gene056398:CDS |
| ATGAACACAGACATAAAAGT+TGG | 0.550757 | 4.1:+33882624 | MS.gene056398:CDS |
| GAAAAGCTGGGAAGGGAACA+TGG | 0.551231 | 4.1:+33883400 | MS.gene056398:CDS |
| ACTGATCAATTGTATTCTGA+GGG | 0.552570 | 4.1:-33885456 | None:intergenic |
| GTGGTGTTAGGCCTGTTCCT+GGG | 0.553445 | 4.1:+33882877 | MS.gene056398:CDS |
| ATTGTTGCAACTAACTCACT+TGG | 0.554897 | 4.1:+33882930 | MS.gene056398:CDS |
| AGAAAAGGATGAGAGATTGG+TGG | 0.555800 | 4.1:-33885650 | None:intergenic |
| GAAATATCAATGGAGTGGAT+AGG | 0.557954 | 4.1:+33883243 | MS.gene056398:CDS |
| GTCCTCTCCAATGAAAGTGT+TGG | 0.558109 | 4.1:+33883007 | MS.gene056398:CDS |
| CTTTCTAAAACCATTCCAGA+TGG | 0.563456 | 4.1:+33885529 | MS.gene056398:CDS |
| ACAGGAAGCTTGGACAATTG+AGG | 0.563685 | 4.1:-33885688 | None:intergenic |
| GCTTGGACAATTGAGGCTCT+CGG | 0.566507 | 4.1:-33885681 | None:intergenic |
| ATCTATTGCGAAGCTTGGGA+GGG | 0.567095 | 4.1:+33884233 | MS.gene056398:CDS |
| GACATTGGTTTGTCAAACAA+TGG | 0.568828 | 4.1:+33886039 | MS.gene056398:CDS |
| ATAGGCTGATTGCTAAGGTG+GGG | 0.576897 | 4.1:+33883261 | MS.gene056398:CDS |
| TAGGCTGATTGCTAAGGTGG+GGG | 0.578325 | 4.1:+33883262 | MS.gene056398:CDS |
| TCCAACAACCACTCCAAGAG+TGG | 0.580092 | 4.1:+33885908 | MS.gene056398:CDS |
| TGGAGATGAACCATCTGGAA+TGG | 0.580483 | 4.1:-33885539 | None:intergenic |
| GATTGGTGGATAAGGCAGCT+TGG | 0.581530 | 4.1:-33885636 | None:intergenic |
| CTCGGGAAGAGAATTGCAGT+TGG | 0.583302 | 4.1:+33883323 | MS.gene056398:CDS |
| CCAACACAAGCATGTCTCCC+AGG | 0.583666 | 4.1:-33882894 | None:intergenic |
| TAGAGACAATTGATAGACTC+AGG | 0.589019 | 4.1:+33886160 | MS.gene056398:CDS |
| AACTTGGTGCTAAGGCGTTG+CGG | 0.593967 | 4.1:+33883378 | MS.gene056398:CDS |
| TAAAGAGACATCCAAATCAA+GGG | 0.597215 | 4.1:+33883436 | MS.gene056398:CDS |
| ACAAGGAAATATCAATGGAG+TGG | 0.598845 | 4.1:+33883238 | MS.gene056398:CDS |
| AACACAGACATAAAAGTTGG+TGG | 0.601218 | 4.1:+33882627 | MS.gene056398:CDS |
| GCGTTGCGGAAAAGCTGGGA+AGG | 0.605950 | 4.1:+33883392 | MS.gene056398:CDS |
| AGCAACTGAGGCTATGCAAG+AGG | 0.606268 | 4.1:+33884777 | MS.gene056398:CDS |
| TGATTGTGAGTCAGAAGTAA+GGG | 0.607233 | 4.1:-33886232 | None:intergenic |
| ATTAACTTTAGTAGCACCCC+AGG | 0.608080 | 4.1:-33882594 | None:intergenic |
| AGGAAATGACCTTGATGCGG+CGG | 0.609502 | 4.1:+33885936 | MS.gene056398:CDS |
| CGATCGCAATTGCAGCATGT+CGG | 0.611032 | 4.1:-33885968 | None:intergenic |
| ATTGCATCACCTTGTTTGCG+CGG | 0.616347 | 4.1:-33885862 | None:intergenic |
| TCACAATCATCAGAGATCAA+AGG | 0.618878 | 4.1:+33886246 | MS.gene056398:CDS |
| AGCACAGATGGCAGCAACTG+AGG | 0.619137 | 4.1:+33884765 | MS.gene056398:CDS |
| ACTTCCCGGAAACTTTGTCA+AGG | 0.621117 | 4.1:+33884152 | MS.gene056398:CDS |
| TAAGGCGTTGCGGAAAAGCT+GGG | 0.622391 | 4.1:+33883388 | MS.gene056398:CDS |
| GATAGGCTGATTGCTAAGGT+GGG | 0.622398 | 4.1:+33883260 | MS.gene056398:CDS |
| CAAGCTTCGCAATAGATGAA+GGG | 0.632626 | 4.1:-33884227 | None:intergenic |
| CGTTGCGGAAAAGCTGGGAA+GGG | 0.647668 | 4.1:+33883393 | MS.gene056398:CDS |
| AGAGCTAAGTAATTCTGCCA+AGG | 0.648404 | 4.1:+33885426 | MS.gene056398:CDS |
| AGTGGATAGGCTGATTGCTA+AGG | 0.655516 | 4.1:+33883256 | MS.gene056398:CDS |
| TCTAATGGAGTTAAGCAACA+AGG | 0.656865 | 4.1:+33883221 | MS.gene056398:CDS |
| AATGGCAAATCTAGTTCCTG+GGG | 0.665627 | 4.1:+33882578 | None:intergenic |
| TTAGATCATCATGTTCATCA+GGG | 0.666720 | 4.1:-33882776 | None:intergenic |
| TAAAGGAAATGACCTTGATG+CGG | 0.678002 | 4.1:+33885933 | MS.gene056398:CDS |
| ACACTAGCCTGAATAGTGCG+CGG | 0.681954 | 4.1:+33885491 | MS.gene056398:CDS |
| ATTGTTCCAGCACTAGCAGG+TGG | 0.697945 | 4.1:+33882684 | MS.gene056398:CDS |
| ACTGCAATTCTCTTCCCGAG+AGG | 0.722826 | 4.1:-33883320 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTATAAAGAAAGTTAA+CGG | + | chr4.1:33884054-33884073 | MS.gene056398:CDS | 15.0% |
| !! | TAAAATAAGTAAATACAAAC+AGG | - | chr4.1:33883525-33883544 | None:intergenic | 15.0% |
| !! | AAGATATGCATTACTAATAA+AGG | + | chr4.1:33884933-33884952 | MS.gene056398:intron | 20.0% |
| !! | AAGTATCAACATTATATCTT+CGG | - | chr4.1:33885038-33885057 | None:intergenic | 20.0% |
| !! | AGTAAGTTTATTCACAATTT+AGG | + | chr4.1:33883499-33883518 | MS.gene056398:intron | 20.0% |
| !! | CATACAACATTCATATTATT+AGG | + | chr4.1:33884561-33884580 | MS.gene056398:intron | 20.0% |
| !! | TATTGTAATCTAATCAATGT+AGG | + | chr4.1:33885135-33885154 | MS.gene056398:intron | 20.0% |
| !! | TTTATTAGTAATGCATATCT+TGG | - | chr4.1:33884934-33884953 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTTGAGAAATTTT+TGG | + | chr4.1:33886005-33886024 | MS.gene056398:CDS | 20.0% |
| !!! | TTTTTAAAAGAAATTGGGTA+AGG | - | chr4.1:33885306-33885325 | None:intergenic | 20.0% |
| ! | ACAAGTAGATAAGAAATCAA+TGG | + | chr4.1:33883043-33883062 | MS.gene056398:CDS | 25.0% |
| ! | CAAAATCAAAAGATTGTTCT+TGG | + | chr4.1:33885730-33885749 | MS.gene056398:CDS | 25.0% |
| ! | CATAAACCTTAAGTCAATAA+CGG | - | chr4.1:33884620-33884639 | None:intergenic | 25.0% |
| ! | GTATACAACATTCATATTGT+TGG | + | chr4.1:33884593-33884612 | MS.gene056398:intron | 25.0% |
| ! | TAATGAATAATGAATCCAGT+AGG | - | chr4.1:33884657-33884676 | None:intergenic | 25.0% |
| ! | TAGTTGTATCATTAGTTAGT+TGG | + | chr4.1:33884307-33884326 | MS.gene056398:intron | 25.0% |
| ! | TATAAGAAGTGATTATGCAT+AGG | - | chr4.1:33883694-33883713 | None:intergenic | 25.0% |
| ! | TGAAACATATAGTGAAATTC+AGG | + | chr4.1:33885166-33885185 | MS.gene056398:intron | 25.0% |
| !! | AAATCAAGGCTTTTATGTTA+AGG | + | chr4.1:33882719-33882738 | MS.gene056398:CDS | 25.0% |
| !! | AAGATATTTCTGACACTATT+TGG | + | chr4.1:33885380-33885399 | MS.gene056398:intron | 25.0% |
| !! | AGCATTAAATACTTTTGTTG+GGG | - | chr4.1:33884356-33884375 | None:intergenic | 25.0% |
| !! | GAGCATTAAATACTTTTGTT+GGG | - | chr4.1:33884357-33884376 | None:intergenic | 25.0% |
| !! | GATAAGAAATCAATGGTTTT+AGG | + | chr4.1:33883050-33883069 | MS.gene056398:CDS | 25.0% |
| !! | TCAATCAGAAATTTAGTTCA+AGG | + | chr4.1:33883350-33883369 | MS.gene056398:CDS | 25.0% |
| !! | TTAAAACAAATCACCTTTTG+TGG | + | chr4.1:33884980-33884999 | MS.gene056398:intron | 25.0% |
| !! | TTTTAACAAGATTCACTTTC+TGG | + | chr4.1:33883921-33883940 | MS.gene056398:intron | 25.0% |
| !!! | AGACGATTTTAAGTTGTTTA+TGG | + | chr4.1:33885093-33885112 | MS.gene056398:intron | 25.0% |
| !!! | ATTTTTTGCATATCCACAAA+AGG | - | chr4.1:33884996-33885015 | None:intergenic | 25.0% |
| !!! | TCTTTTGAGAAATTCTCTAA+TGG | + | chr4.1:33883206-33883225 | MS.gene056398:CDS | 25.0% |
| !!! | TTTTTTTTTCACATCTTGAC+AGG | + | chr4.1:33884720-33884739 | MS.gene056398:intron | 25.0% |
| AAACAAAGAAAAGTCCAACA+AGG | - | chr4.1:33883820-33883839 | None:intergenic | 30.0% | |
| AACTGATCAATTGTATTCTG+AGG | - | chr4.1:33885460-33885479 | None:intergenic | 30.0% | |
| AAGCAACAAGGAAATATCAA+TGG | + | chr4.1:33883233-33883252 | MS.gene056398:CDS | 30.0% | |
| AAGCTGAAACTGCAAAAATA+AGG | - | chr4.1:33884278-33884297 | None:intergenic | 30.0% | |
| AATTCAAACTCTGTCTCTTT+AGG | - | chr4.1:33885225-33885244 | None:intergenic | 30.0% | |
| ACTGATCAATTGTATTCTGA+GGG | - | chr4.1:33885459-33885478 | None:intergenic | 30.0% | |
| ATAAAGAAAGTTAACGGTGA+TGG | + | chr4.1:33884060-33884079 | MS.gene056398:CDS | 30.0% | |
| ATAAAGAGACATCCAAATCA+AGG | + | chr4.1:33883435-33883454 | MS.gene056398:CDS | 30.0% | |
| ATAGGATCGAGTAAAAATGA+GGG | + | chr4.1:33886117-33886136 | MS.gene056398:CDS | 30.0% | |
| ATGAACACAGACATAAAAGT+TGG | + | chr4.1:33882624-33882643 | MS.gene056398:CDS | 30.0% | |
| ATTAGATCATCATGTTCATC+AGG | - | chr4.1:33882780-33882799 | None:intergenic | 30.0% | |
| CAACATTATATCTTCGGTAT+CGG | - | chr4.1:33885032-33885051 | None:intergenic | 30.0% | |
| CTTAACCGAGTTAAAAAACA+TGG | - | chr4.1:33884429-33884448 | None:intergenic | 30.0% | |
| CTTAATTGATACGTTTATCC+AGG | + | chr4.1:33883756-33883775 | MS.gene056398:intron | 30.0% | |
| CTTATCATTGATGAAACATG+TGG | + | chr4.1:33885055-33885074 | MS.gene056398:intron | 30.0% | |
| GAATTACTTGTAGTTGAAAC+AGG | - | chr4.1:33885709-33885728 | None:intergenic | 30.0% | |
| GAGAATTTCTCAAAAGAAGT+AGG | - | chr4.1:33883203-33883222 | None:intergenic | 30.0% | |
| GATCTTTGTGTTTCTTAATC+TGG | + | chr4.1:33884859-33884878 | MS.gene056398:intron | 30.0% | |
| GGAAGATGTTTAAACATCTA+AGG | - | chr4.1:33885347-33885366 | None:intergenic | 30.0% | |
| GTTGTGATTCTTTCATTATC+TGG | - | chr4.1:33885562-33885581 | None:intergenic | 30.0% | |
| TAAAGAGACATCCAAATCAA+GGG | + | chr4.1:33883436-33883455 | MS.gene056398:CDS | 30.0% | |
| TCAAAGTTGTTCAAAAAGAC+AGG | - | chr4.1:33883782-33883801 | None:intergenic | 30.0% | |
| TTACTCTCGTAATCTTTAGA+AGG | - | chr4.1:33883988-33884007 | None:intergenic | 30.0% | |
| TTAGATCATCATGTTCATCA+GGG | - | chr4.1:33882779-33882798 | None:intergenic | 30.0% | |
| TTAGTTCAAGGAATTGAACT+TGG | + | chr4.1:33883362-33883381 | MS.gene056398:CDS | 30.0% | |
| TTAGTTGCAACAATATCTTC+AGG | - | chr4.1:33882924-33882943 | None:intergenic | 30.0% | |
| ! | ATTATGCATAGGCTATTTCA+TGG | - | chr4.1:33883683-33883702 | None:intergenic | 30.0% |
| ! | CGAGCATTAAATACTTTTGT+TGG | - | chr4.1:33884358-33884377 | None:intergenic | 30.0% |
| ! | GCATGACAATTGATTCAAAT+GGG | - | chr4.1:33884511-33884530 | None:intergenic | 30.0% |
| ! | GGAGATTTGTTTACAAATCA+AGG | + | chr4.1:33882705-33882724 | MS.gene056398:CDS | 30.0% |
| ! | TCTTAATCTGGTTGAGATTT+TGG | + | chr4.1:33884871-33884890 | MS.gene056398:intron | 30.0% |
| ! | TGCATGACAATTGATTCAAA+TGG | - | chr4.1:33884512-33884531 | None:intergenic | 30.0% |
| !! | ATAGTTTGCTACAATGTCTT+AGG | + | chr4.1:33884812-33884831 | MS.gene056398:CDS | 30.0% |
| !! | CTTATTTCTATAAGCACTCT+AGG | + | chr4.1:33883630-33883649 | MS.gene056398:intron | 30.0% |
| !! | GAATTTTCGAGGACTAAAAT+TGG | - | chr4.1:33885763-33885782 | None:intergenic | 30.0% |
| !!! | AATCTTGTTTTCTTCCTTAG+AGG | - | chr4.1:33884031-33884050 | None:intergenic | 30.0% |
| !!! | ATCTGGAATGGTTTTAGAAA+GGG | - | chr4.1:33885530-33885549 | None:intergenic | 30.0% |
| !!! | CATTGCCATGTTTTTTAACT+CGG | + | chr4.1:33884421-33884440 | MS.gene056398:intron | 30.0% |
| !!! | TGTTGTTGATTTTGTGAAGA+AGG | + | chr4.1:33883103-33883122 | MS.gene056398:CDS | 30.0% |
| AACACAGACATAAAAGTTGG+TGG | + | chr4.1:33882627-33882646 | MS.gene056398:CDS | 35.0% | |
| AACAGAAAAGGATGAGAGAT+TGG | - | chr4.1:33885656-33885675 | None:intergenic | 35.0% | |
| AAGAAAAGACAACGAAGCAA+AGG | + | chr4.1:33884097-33884116 | MS.gene056398:CDS | 35.0% | |
| AATTCCAAACAAGCCTTACA+AGG | + | chr4.1:33885835-33885854 | MS.gene056398:CDS | 35.0% | |
| ACAAAAACTTGCAGCTTCTT+GGG | + | chr4.1:33885612-33885631 | MS.gene056398:CDS | 35.0% | |
| ACAAGGAAATATCAATGGAG+TGG | + | chr4.1:33883238-33883257 | MS.gene056398:CDS | 35.0% | |
| ACCGATCAACAAAAACAAAC+TGG | - | chr4.1:33882827-33882846 | None:intergenic | 35.0% | |
| AGTCTATCAATTGTCTCTAC+CGG | - | chr4.1:33886159-33886178 | None:intergenic | 35.0% | |
| AGTTTGAATTTCCTCAGGAA+CGG | + | chr4.1:33885235-33885254 | MS.gene056398:intron | 35.0% | |
| ATGATTGTGAGTCAGAAGTA+AGG | - | chr4.1:33886236-33886255 | None:intergenic | 35.0% | |
| ATTGTTGCAACTAACTCACT+TGG | + | chr4.1:33882930-33882949 | MS.gene056398:CDS | 35.0% | |
| CATTTCCTTTAATCCACTCT+TGG | - | chr4.1:33885924-33885943 | None:intergenic | 35.0% | |
| CTAACTGAATCTTGTCACTA+AGG | - | chr4.1:33882803-33882822 | None:intergenic | 35.0% | |
| CTCTCGGTTATAAACAGAAA+AGG | - | chr4.1:33885668-33885687 | None:intergenic | 35.0% | |
| CTTAGTGACAAGATTCAGTT+AGG | + | chr4.1:33882801-33882820 | MS.gene056398:CDS | 35.0% | |
| GAAATATCAATGGAGTGGAT+AGG | + | chr4.1:33883243-33883262 | MS.gene056398:CDS | 35.0% | |
| GATAGGATCGAGTAAAAATG+AGG | + | chr4.1:33886116-33886135 | MS.gene056398:CDS | 35.0% | |
| GTCAGAAATATCTTGAGTAG+TGG | - | chr4.1:33885374-33885393 | None:intergenic | 35.0% | |
| TAAAGGAAATGACCTTGATG+CGG | + | chr4.1:33885933-33885952 | MS.gene056398:CDS | 35.0% | |
| TAGAGACAATTGATAGACTC+AGG | + | chr4.1:33886160-33886179 | MS.gene056398:CDS | 35.0% | |
| TAGGATCGAGTAAAAATGAG+GGG | + | chr4.1:33886118-33886137 | MS.gene056398:CDS | 35.0% | |
| TCAAACAATGGTCAAATAGC+AGG | + | chr4.1:33886051-33886070 | MS.gene056398:CDS | 35.0% | |
| TCACAATCATCAGAGATCAA+AGG | + | chr4.1:33886246-33886265 | MS.gene056398:CDS | 35.0% | |
| TCTAATGGAGTTAAGCAACA+AGG | + | chr4.1:33883221-33883240 | MS.gene056398:CDS | 35.0% | |
| TGAAACCTTGACAAAGTTTC+CGG | - | chr4.1:33884160-33884179 | None:intergenic | 35.0% | |
| TGATTCTCCAACACTTTCAT+TGG | - | chr4.1:33883017-33883036 | None:intergenic | 35.0% | |
| TGATTGTGAGTCAGAAGTAA+GGG | - | chr4.1:33886235-33886254 | None:intergenic | 35.0% | |
| ! | CTCTGTCTCTTTAGGTTATA+AGG | - | chr4.1:33885217-33885236 | None:intergenic | 35.0% |
| ! | GAGTTTGAGATAATACCTAC+TGG | + | chr4.1:33884639-33884658 | MS.gene056398:intron | 35.0% |
| ! | TTTTCTTAGCAATGCTTCTG+AGG | + | chr4.1:33882953-33882972 | MS.gene056398:CDS | 35.0% |
| !! | AACTTAAAAGCGTCAACGAT+TGG | + | chr4.1:33886085-33886104 | MS.gene056398:CDS | 35.0% |
| !! | CTTTCTAAAACCATTCCAGA+TGG | + | chr4.1:33885529-33885548 | MS.gene056398:CDS | 35.0% |
| !! | GACATTGGTTTGTCAAACAA+TGG | + | chr4.1:33886039-33886058 | MS.gene056398:CDS | 35.0% |
| !! | GAGAAATTTTTGGACAGTGA+TGG | + | chr4.1:33886015-33886034 | MS.gene056398:CDS | 35.0% |
| !!! | CATCTGGAATGGTTTTAGAA+AGG | - | chr4.1:33885531-33885550 | None:intergenic | 35.0% |
| !!! | GCCAGTTTGTTTTTGTTGAT+CGG | + | chr4.1:33882823-33882842 | MS.gene056398:CDS | 35.0% |
| !!! | TGTTGGACTAGTTGCTTTTT+TGG | - | chr4.1:33885895-33885914 | None:intergenic | 35.0% |
| AATATCTTGAGTAGTGGCAG+AGG | - | chr4.1:33885368-33885387 | None:intergenic | 40.0% | |
| AGAAAAGGATGAGAGATTGG+TGG | - | chr4.1:33885653-33885672 | None:intergenic | 40.0% | |
| AGACAGTTTGGTAGAGCTTA+TGG | + | chr4.1:33883572-33883591 | MS.gene056398:intron | 40.0% | |
| AGAGCTAAGTAATTCTGCCA+AGG | + | chr4.1:33885426-33885445 | MS.gene056398:CDS | 40.0% | |
| AGGATCGAGTAAAAATGAGG+GGG | + | chr4.1:33886119-33886138 | MS.gene056398:CDS | 40.0% | |
| ATTAACTTTAGTAGCACCCC+AGG | - | chr4.1:33882597-33882616 | None:intergenic | 40.0% | |
| CAAGCTTCGCAATAGATGAA+GGG | - | chr4.1:33884230-33884249 | None:intergenic | 40.0% | |
| CTTACTGTGCTACGAAATTC+AGG | - | chr4.1:33883485-33883504 | None:intergenic | 40.0% | |
| CTTAGAAGATGCCCTTGATT+TGG | - | chr4.1:33883450-33883469 | None:intergenic | 40.0% | |
| CTTCATCTATTGCGAAGCTT+GGG | + | chr4.1:33884229-33884248 | MS.gene056398:CDS | 40.0% | |
| GAAACCTTGACAAAGTTTCC+GGG | - | chr4.1:33884159-33884178 | None:intergenic | 40.0% | |
| GACAAAAACTTGCAGCTTCT+TGG | + | chr4.1:33885611-33885630 | MS.gene056398:CDS | 40.0% | |
| GACAGAGTTTGAATTTCCTC+AGG | + | chr4.1:33885230-33885249 | MS.gene056398:intron | 40.0% | |
| GATGATGAGTCATAACAGAC+AGG | - | chr4.1:33884474-33884493 | None:intergenic | 40.0% | |
| GGAAAGAAATCTTCAGAAGC+CGG | + | chr4.1:33884129-33884148 | MS.gene056398:CDS | 40.0% | |
| GGCAAAGAATAGCAACTAGT+AGG | - | chr4.1:33883182-33883201 | None:intergenic | 40.0% | |
| GTCATAACAGACAGGATCTT+TGG | - | chr4.1:33884466-33884485 | None:intergenic | 40.0% | |
| TAAGCACTTGTGAGACAGTT+TGG | + | chr4.1:33883560-33883579 | MS.gene056398:intron | 40.0% | |
| TAGCAACTAGTAGGTGAAGA+AGG | - | chr4.1:33883173-33883192 | None:intergenic | 40.0% | |
| TGACAGAAGCAAGTGTTCAA+TGG | + | chr4.1:33884196-33884215 | MS.gene056398:CDS | 40.0% | |
| TGTAGTTGAAACAGGAAGCT+TGG | - | chr4.1:33885701-33885720 | None:intergenic | 40.0% | |
| TGTCAAACATCAGACCTTGT+TGG | + | chr4.1:33883803-33883822 | MS.gene056398:intron | 40.0% | |
| TTATCTGGAGATGAACCATC+TGG | - | chr4.1:33885547-33885566 | None:intergenic | 40.0% | |
| ! | AACGATTGGTTGGATGAGAT+AGG | + | chr4.1:33886099-33886118 | MS.gene056398:CDS | 40.0% |
| ! | ACGAAGCAAAGGAACTCTTT+TGG | + | chr4.1:33884108-33884127 | MS.gene056398:CDS | 40.0% |
| ! | AGTTCCTTGTAAGGCTTGTT+TGG | - | chr4.1:33885842-33885861 | None:intergenic | 40.0% |
| ! | ATGTACTTTTCCTAGGAGTC+TGG | - | chr4.1:33883951-33883970 | None:intergenic | 40.0% |
| ! | ATTCTGAGGGTTATGTTCCT+TGG | - | chr4.1:33885446-33885465 | None:intergenic | 40.0% |
| ! | CGTCTTCTCTTGAATTTTCG+AGG | - | chr4.1:33885774-33885793 | None:intergenic | 40.0% |
| ! | GTTTTCTTCCTTAGAGGACT+TGG | - | chr4.1:33884025-33884044 | None:intergenic | 40.0% |
| ! | TCACTCGATGTACTTTTCCT+AGG | - | chr4.1:33883958-33883977 | None:intergenic | 40.0% |
| ! | TGTTTGGAATTAGCTACTGC+TGG | - | chr4.1:33885826-33885845 | None:intergenic | 40.0% |
| !! | AGGAATTGAACTTGGTGCTA+AGG | + | chr4.1:33883370-33883389 | MS.gene056398:CDS | 40.0% |
| !! | AGTTAACGGTGATGGAACTA+TGG | + | chr4.1:33884068-33884087 | MS.gene056398:CDS | 40.0% |
| !! | CTTCTGAGGTTAAGGTTAAG+AGG | + | chr4.1:33882967-33882986 | MS.gene056398:CDS | 40.0% |
| !! | GTTGGACCGTTATTGACTTA+AGG | + | chr4.1:33884611-33884630 | MS.gene056398:intron | 40.0% |
| !! | TAAAAGCGTCAACGATTGGT+TGG | + | chr4.1:33886089-33886108 | MS.gene056398:CDS | 40.0% |
| !! | TAGCAATGCTTCTGAGGTTA+AGG | + | chr4.1:33882959-33882978 | MS.gene056398:CDS | 40.0% |
| AAATCATCCGCGCACTATTC+AGG | - | chr4.1:33885501-33885520 | None:intergenic | 45.0% | |
| AACACCAACCAAGTCCTCTA+AGG | + | chr4.1:33884014-33884033 | MS.gene056398:CDS | 45.0% | |
| ACAGGAAGCTTGGACAATTG+AGG | - | chr4.1:33885691-33885710 | None:intergenic | 45.0% | |
| ACTTCCCGGAAACTTTGTCA+AGG | + | chr4.1:33884152-33884171 | MS.gene056398:CDS | 45.0% | |
| AGGTCAGACTCTTACTACTG+AGG | - | chr4.1:33885197-33885216 | None:intergenic | 45.0% | |
| AGTGGATAGGCTGATTGCTA+AGG | + | chr4.1:33883256-33883275 | MS.gene056398:CDS | 45.0% | |
| ATAGGCTGATTGCTAAGGTG+GGG | + | chr4.1:33883261-33883280 | MS.gene056398:CDS | 45.0% | |
| ATCTATTGCGAAGCTTGGGA+GGG | + | chr4.1:33884233-33884252 | MS.gene056398:CDS | 45.0% | |
| CACTTTCATTGGAGAGGACT+TGG | - | chr4.1:33883006-33883025 | None:intergenic | 45.0% | |
| CCAAGCTTCGCAATAGATGA+AGG | - | chr4.1:33884231-33884250 | None:intergenic | 45.0% | |
| CCTCAGGAACGGTTGTAAAA+TGG | + | chr4.1:33885246-33885265 | MS.gene056398:intron | 45.0% | |
| CCTTCATCTATTGCGAAGCT+TGG | + | chr4.1:33884228-33884247 | MS.gene056398:CDS | 45.0% | |
| CCTTTAATCCACTCTTGGAG+TGG | - | chr4.1:33885919-33885938 | None:intergenic | 45.0% | |
| CTAAATTAACCGCCGCATCA+AGG | - | chr4.1:33885948-33885967 | None:intergenic | 45.0% | |
| CTCCAACACTTTCATTGGAG+AGG | - | chr4.1:33883012-33883031 | None:intergenic | 45.0% | |
| GACGCTTCATTGAAAGCTCA+TGG | + | chr4.1:33885790-33885809 | MS.gene056398:CDS | 45.0% | |
| GATAGGCTGATTGCTAAGGT+GGG | + | chr4.1:33883260-33883279 | MS.gene056398:CDS | 45.0% | |
| GTTGTTCAAAAAGACAGGCC+TGG | - | chr4.1:33883777-33883796 | None:intergenic | 45.0% | |
| TGGAGATGAACCATCTGGAA+TGG | - | chr4.1:33885542-33885561 | None:intergenic | 45.0% | |
| TTCCGATTCTTCGTGGTGTT+AGG | + | chr4.1:33882865-33882884 | MS.gene056398:CDS | 45.0% | |
| ! | ATTGCATCACCTTGTTTGCG+CGG | - | chr4.1:33885865-33885884 | None:intergenic | 45.0% |
| ! | CCATTTTACAACCGTTCCTG+AGG | - | chr4.1:33885249-33885268 | None:intergenic | 45.0% |
| ! | GGATGAGAGATTGGTGGATA+AGG | - | chr4.1:33885647-33885666 | None:intergenic | 45.0% |
| ! | GTCCTCTCCAATGAAAGTGT+TGG | + | chr4.1:33883007-33883026 | MS.gene056398:CDS | 45.0% |
| ! | TCTTCCTTAGAGGACTTGGT+TGG | - | chr4.1:33884021-33884040 | None:intergenic | 45.0% |
| ! | TTGGACAGTGATGGAGACAT+TGG | + | chr4.1:33886024-33886043 | MS.gene056398:CDS | 45.0% |
| !! | CCACTCCAAGAGTGGATTAA+AGG | + | chr4.1:33885916-33885935 | MS.gene056398:CDS | 45.0% |
| !!! | ATATTTTTTTAAAAGAAATT+GGG | - | chr4.1:33885311-33885330 | None:intergenic | 5.0% |
| !!! | TATATTTTTTTAAAAGAAAT+TGG | - | chr4.1:33885312-33885331 | None:intergenic | 5.0% |
| AAATCTCCACCTGCTAGTGC+TGG | - | chr4.1:33882693-33882712 | None:intergenic | 50.0% | |
| ACACCACGAAGAATCGGAAC+AGG | - | chr4.1:33882864-33882883 | None:intergenic | 50.0% | |
| ACTGCAATTCTCTTCCCGAG+AGG | - | chr4.1:33883323-33883342 | None:intergenic | 50.0% | |
| AGCAACTGAGGCTATGCAAG+AGG | + | chr4.1:33884777-33884796 | MS.gene056398:CDS | 50.0% | |
| AGCATTGTTCCAGCACTAGC+AGG | + | chr4.1:33882681-33882700 | MS.gene056398:CDS | 50.0% | |
| AGGAAATGACCTTGATGCGG+CGG | + | chr4.1:33885936-33885955 | MS.gene056398:CDS | 50.0% | |
| ATTGTTCCAGCACTAGCAGG+TGG | + | chr4.1:33882684-33882703 | MS.gene056398:CDS | 50.0% | |
| CATCTATTGCGAAGCTTGGG+AGG | + | chr4.1:33884232-33884251 | MS.gene056398:CDS | 50.0% | |
| CGATCGCAATTGCAGCATGT+CGG | - | chr4.1:33885971-33885990 | None:intergenic | 50.0% | |
| CTCGGGAAGAGAATTGCAGT+TGG | + | chr4.1:33883323-33883342 | MS.gene056398:CDS | 50.0% | |
| GAAAAGCTGGGAAGGGAACA+TGG | + | chr4.1:33883400-33883419 | MS.gene056398:CDS | 50.0% | |
| GACAAAGTTTCCGGGAAGTC+CGG | - | chr4.1:33884151-33884170 | None:intergenic | 50.0% | |
| GCTTGGACAATTGAGGCTCT+CGG | - | chr4.1:33885684-33885703 | None:intergenic | 50.0% | |
| GGATAGGCTGATTGCTAAGG+TGG | + | chr4.1:33883259-33883278 | MS.gene056398:CDS | 50.0% | |
| GGCCTAACACCACGAAGAAT+CGG | - | chr4.1:33882870-33882889 | None:intergenic | 50.0% | |
| GGGGGAATCATGTCAGATAC+CGG | + | chr4.1:33886137-33886156 | MS.gene056398:CDS | 50.0% | |
| TAGGCTGATTGCTAAGGTGG+GGG | + | chr4.1:33883262-33883281 | MS.gene056398:CDS | 50.0% | |
| TCCAACAACCACTCCAAGAG+TGG | + | chr4.1:33885908-33885927 | MS.gene056398:CDS | 50.0% | |
| TCCACTCTTGGAGTGGTTGT+TGG | - | chr4.1:33885912-33885931 | None:intergenic | 50.0% | |
| TTCTGGTGTTCCAGACTCCT+AGG | + | chr4.1:33883938-33883957 | MS.gene056398:intron | 50.0% | |
| TTTGCGCGGAGTTCCTTGTA+AGG | - | chr4.1:33885851-33885870 | None:intergenic | 50.0% | |
| ! | ACACTAGCCTGAATAGTGCG+CGG | + | chr4.1:33885491-33885510 | MS.gene056398:CDS | 50.0% |
| ! | GATTGGTGGATAAGGCAGCT+TGG | - | chr4.1:33885639-33885658 | None:intergenic | 50.0% |
| !! | AACTTGGTGCTAAGGCGTTG+CGG | + | chr4.1:33883378-33883397 | MS.gene056398:CDS | 50.0% |
| !! | TAAGGCGTTGCGGAAAAGCT+GGG | + | chr4.1:33883388-33883407 | MS.gene056398:CDS | 50.0% |
| AGCACAGATGGCAGCAACTG+AGG | + | chr4.1:33884765-33884784 | MS.gene056398:CDS | 55.0% | |
| CAAGCATGTCTCCCAGGAAC+AGG | - | chr4.1:33882891-33882910 | None:intergenic | 55.0% | |
| CAAGGAACTCCGCGCAAACA+AGG | + | chr4.1:33885853-33885872 | MS.gene056398:CDS | 55.0% | |
| CCAACACAAGCATGTCTCCC+AGG | - | chr4.1:33882897-33882916 | None:intergenic | 55.0% | |
| CCTGGGAGACATGCTTGTGT+TGG | + | chr4.1:33882894-33882913 | MS.gene056398:CDS | 55.0% | |
| CGTTGCGGAAAAGCTGGGAA+GGG | + | chr4.1:33883393-33883412 | MS.gene056398:CDS | 55.0% | |
| GCACAGAGATGCAGCACAGA+TGG | + | chr4.1:33884753-33884772 | MS.gene056398:CDS | 55.0% | |
| GTTCGCGGAGTTAGTCCTCT+CGG | + | chr4.1:33883305-33883324 | MS.gene056398:CDS | 55.0% | |
| TCGCCTGTTCCGATTCTTCG+TGG | + | chr4.1:33882858-33882877 | MS.gene056398:CDS | 55.0% | |
| TCTTCAGAAGCCGGACTTCC+CGG | + | chr4.1:33884138-33884157 | MS.gene056398:CDS | 55.0% | |
| TGCAATTGCGATCGCGAGAC+TGG | + | chr4.1:33885977-33885996 | MS.gene056398:CDS | 55.0% | |
| TTCGCGGAGTTAGTCCTCTC+GGG | + | chr4.1:33883306-33883325 | MS.gene056398:CDS | 55.0% | |
| ! | GTGGTGTTAGGCCTGTTCCT+GGG | + | chr4.1:33882877-33882896 | MS.gene056398:CDS | 55.0% |
| !! | CTAAGGCGTTGCGGAAAAGC+TGG | + | chr4.1:33883387-33883406 | MS.gene056398:CDS | 55.0% |
| GATTGCTAAGGTGGGGGTGG+TGG | + | chr4.1:33883268-33883287 | MS.gene056398:CDS | 60.0% | |
| GCGTTGCGGAAAAGCTGGGA+AGG | + | chr4.1:33883392-33883411 | MS.gene056398:CDS | 60.0% | |
| GCTGATTGCTAAGGTGGGGG+TGG | + | chr4.1:33883265-33883284 | MS.gene056398:CDS | 60.0% | |
| ! | CGTGGTGTTAGGCCTGTTCC+TGG | + | chr4.1:33882876-33882895 | MS.gene056398:CDS | 60.0% |
| !! | GAGACGGGAAAGGGTGTTCG+CGG | + | chr4.1:33883290-33883309 | MS.gene056398:CDS | 60.0% |
| !! | TAAGGTGGGGGTGGTGGAGA+CGG | + | chr4.1:33883274-33883293 | MS.gene056398:CDS | 60.0% |
| !! | AAGGTGGGGGTGGTGGAGAC+GGG | + | chr4.1:33883275-33883294 | MS.gene056398:CDS | 65.0% |
| !! | GGGGTGGTGGAGACGGGAAA+GGG | + | chr4.1:33883281-33883300 | MS.gene056398:CDS | 65.0% |
| !! | GGGGGTGGTGGAGACGGGAA+AGG | + | chr4.1:33883280-33883299 | MS.gene056398:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 33882579 | 33886278 | 33882579 | ID=MS.gene056398 |
| chr4.1 | mRNA | 33882579 | 33886278 | 33882579 | ID=MS.gene056398.t1;Parent=MS.gene056398 |
| chr4.1 | exon | 33882579 | 33883499 | 33882579 | ID=MS.gene056398.t1.exon1;Parent=MS.gene056398.t1 |
| chr4.1 | CDS | 33882579 | 33883499 | 33882579 | ID=cds.MS.gene056398.t1;Parent=MS.gene056398.t1 |
| chr4.1 | exon | 33883952 | 33884254 | 33883952 | ID=MS.gene056398.t1.exon2;Parent=MS.gene056398.t1 |
| chr4.1 | CDS | 33883952 | 33884254 | 33883952 | ID=cds.MS.gene056398.t1;Parent=MS.gene056398.t1 |
| chr4.1 | exon | 33884742 | 33884833 | 33884742 | ID=MS.gene056398.t1.exon3;Parent=MS.gene056398.t1 |
| chr4.1 | CDS | 33884742 | 33884833 | 33884742 | ID=cds.MS.gene056398.t1;Parent=MS.gene056398.t1 |
| chr4.1 | exon | 33885417 | 33886278 | 33885417 | ID=MS.gene056398.t1.exon4;Parent=MS.gene056398.t1 |
| chr4.1 | CDS | 33885417 | 33886278 | 33885417 | ID=cds.MS.gene056398.t1;Parent=MS.gene056398.t1 |
| Gene Sequence |
| Protein sequence |
