AlfalfaGEDB | MS.gene55406

M. sativa cultivar XinJiangDaYe / MS.gene55406

KEGG: -
GO: -
PFAM: PF03004.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55406.t1	GAU36126.1	65	968	150	6	1	786	92	1052	0.00E+00	1124.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55406.t1	A0A2Z6MW28	65.0	968	150	6	1	786	92	1052	0.0e+00	1124.8

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene55406	0.839379	1.64E-57	-1.69E-46
MS.gene049159	MS.gene55406	0.81664	4.98E-52	-1.69E-46
MS.gene049254	MS.gene55406	0.836261	1.04E-56	-1.69E-46
MS.gene049272	MS.gene55406	0.810061	1.39E-50	-1.69E-46
MS.gene049343	MS.gene55406	0.806551	7.79E-50	-1.69E-46
MS.gene049404	MS.gene55406	0.823864	1.10E-53	-1.69E-46
MS.gene049435	MS.gene55406	0.850129	2.07E-60	-1.69E-46
MS.gene049501	MS.gene55406	0.819349	1.22E-52	-1.69E-46
MS.gene049711	MS.gene55406	0.858301	9.05E-63	-1.69E-46
MS.gene049850	MS.gene55406	0.846556	2.02E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55406.t1	MTR_6g007640	57.143	77	31	1	706	780	22	98	3.59e-20	86.7
MS.gene55406.t1	MTR_7g071010	47.222	72	31	2	590	654	3	74	5.47e-12	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55406.t1	AT1G40087	28.660	321	188	10	458	764	56	349	7.05e-20	93.2
MS.gene55406.t1	AT3G30200	27.010	311	186	9	470	764	184	469	3.84e-16	82.8

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Find 161 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGACCGAGGAAGAAA+TGG	0.468253	5.2:-34539665	MS.gene55406:CDS
AAACATGACTTGAAAGCAAA+GGG	0.504754	5.2:-34539697	MS.gene55406:CDS
AAACTTTATGCGCCTCCCTA+CGG	0.538836	5.2:+34542739	None:intergenic
AAAGGATCTGTACGTTGTCT+TGG	0.502221	5.2:-34538677	MS.gene55406:CDS
AAATAAGTAACATCAACAAA+AGG	0.542008	5.2:-34539483	MS.gene55406:CDS
AACTACAAGTGACAGTGATT+GGG	0.519314	5.2:-34538366	MS.gene55406:CDS
AACTCTTCTATCAGGGATGT+AGG	0.523874	5.2:+34539639	None:intergenic
AAGAGGTTATACCCGAATGT+CGG	0.647233	5.2:-34540105	MS.gene55406:CDS
AAGATAACTTGAGTGCTAAG+TGG	0.581349	5.2:-34539729	MS.gene55406:CDS
AAGATCTAATGTTGAAAATA+GGG	0.362744	5.2:-34538621	MS.gene55406:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACTACACTTACCTTT+AGG	+	chr5.2:34539284-34539303	None:intergenic	30.0%
AAACATGACTTGAAAGCAAA+GGG	-	chr5.2:34542701-34542720	MS.gene55406:CDS	30.0%
AAACCATACATCATATGCAA+AGG	+	chr5.2:34542233-34542252	None:intergenic	30.0%
ACCAAACCTAAATGATACAT+AGG	+	chr5.2:34539340-34539359	None:intergenic	30.0%
AGAATTCATATGTGTTGAAG+TGG	-	chr5.2:34542338-34542357	MS.gene55406:intron	30.0%
AGACTCAAGATTCTACAAAT+TGG	-	chr5.2:34543659-34543678	MS.gene55406:intron	30.0%
ATAAGGATTAAGTGTGTGTT+TGG	-	chr5.2:34541185-34541204	MS.gene55406:intron	30.0%
ATACCTTTGCATATGATGTA+TGG	-	chr5.2:34542227-34542246	MS.gene55406:CDS	30.0%
ATATAAATTTCAGCTCGTGA+AGG	+	chr5.2:34543417-34543436	None:intergenic	30.0%
ATATGATAGATACCAATGAG+AGG	-	chr5.2:34540994-34541013	MS.gene55406:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	34538358	34544062	34538358	ID=MS.gene55406
chr5.2	mRNA	34538358	34544062	34538358	ID=MS.gene55406.t1;Parent=MS.gene55406
chr5.2	exon	34543924	34544062	34543924	ID=MS.gene55406.t1.exon1;Parent=MS.gene55406.t1
chr5.2	CDS	34543924	34544062	34543924	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34543705	34543842	34543705	ID=MS.gene55406.t1.exon2;Parent=MS.gene55406.t1
chr5.2	CDS	34543705	34543842	34543705	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34543312	34543449	34543312	ID=MS.gene55406.t1.exon3;Parent=MS.gene55406.t1
chr5.2	CDS	34543312	34543449	34543312	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34543133	34543225	34543133	ID=MS.gene55406.t1.exon4;Parent=MS.gene55406.t1
chr5.2	CDS	34543133	34543225	34543133	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34542624	34542764	34542624	ID=MS.gene55406.t1.exon5;Parent=MS.gene55406.t1
chr5.2	CDS	34542624	34542764	34542624	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34542412	34542546	34542412	ID=MS.gene55406.t1.exon6;Parent=MS.gene55406.t1
chr5.2	CDS	34542412	34542546	34542412	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34542110	34542250	34542110	ID=MS.gene55406.t1.exon7;Parent=MS.gene55406.t1
chr5.2	CDS	34542110	34542250	34542110	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34541900	34542034	34541900	ID=MS.gene55406.t1.exon8;Parent=MS.gene55406.t1
chr5.2	CDS	34541900	34542034	34541900	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34541277	34541417	34541277	ID=MS.gene55406.t1.exon9;Parent=MS.gene55406.t1
chr5.2	CDS	34541277	34541417	34541277	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34540231	34540365	34540231	ID=MS.gene55406.t1.exon10;Parent=MS.gene55406.t1
chr5.2	CDS	34540231	34540365	34540231	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34539908	34540140	34539908	ID=MS.gene55406.t1.exon11;Parent=MS.gene55406.t1
chr5.2	CDS	34539908	34540140	34539908	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34539585	34539803	34539585	ID=MS.gene55406.t1.exon12;Parent=MS.gene55406.t1
chr5.2	CDS	34539585	34539803	34539585	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34539417	34539506	34539417	ID=MS.gene55406.t1.exon13;Parent=MS.gene55406.t1
chr5.2	CDS	34539417	34539506	34539417	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34538926	34539030	34538926	ID=MS.gene55406.t1.exon14;Parent=MS.gene55406.t1
chr5.2	CDS	34538926	34539030	34538926	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34538517	34538813	34538517	ID=MS.gene55406.t1.exon15;Parent=MS.gene55406.t1
chr5.2	CDS	34538517	34538813	34538517	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1
chr5.2	exon	34538358	34538438	34538358	ID=MS.gene55406.t1.exon16;Parent=MS.gene55406.t1
chr5.2	CDS	34538358	34538438	34538358	ID=cds.MS.gene55406.t1;Parent=MS.gene55406.t1

Gene Sequence

>MS.gene55406

ATGGTGAAGCGCAGAAGGTTGAATGTTGTTCGAAAAAGTGGCAAATCACAGGCTAAAGAGAAACAGTTAATTTATAGCTCTGATGAAGTCAACCAAAACAAACACAGTAAAACAGAAGAGTTTGCACAATTTGAAGGAGGTGTGGAAAATTGTTGTTGGCTCAATTTCTTTTTCATTTTTTCTTGAATTTTCATACCTTTTTATTTTCAATTTTTTATAGTAAATACAAGAAAGAATCAAATGCTAGCTAGTCTGAATCACCAAAATGATGTACCACAATCAGAACAGCAAATACACGTGGGAAGTCATGTTGAATATCCTATTTCTTATGGTAGAATGGGTAAAAGTTTACCTAAAGGTAAGTGAAGTTTTTTTCTTAAAAGTCATTGTGCAAGTATTTTCCTCTTTGTTTACATGTGTCTCATTTAGGTTTGGTTACATAATCATTATAATCAACTGTTTATCAACCCTAATTTGATATGTTTAACTGTGTATCATTTATTTTTTATATTTTAAAAAACTGTGCCTATGTTTAACTGTGTATCATTTAGCTTGATATTTTATACCATTTGTAGCAATTAAAAATAATTTGACTTTGCATTATCTATAATAGATACTCTGGAGAGGCGCACAAGGTTGAGTGTTCGAAAAAGTGGCAAAGCACAAGCTGAAGAGCTATTAATTCATAGCTCTAATGAAGTCAACCAAAACAGCCACCGTATAAATGTAGAGTGTGCACATTGTGGAGGAGGTATGAAATTTTTATTCTTGTCAGTTTCTTTCTCCTTTTGCCTTGAAGTGTCATATTTATTATTTTTTATTTTTTTAATTTTATAGGCACGAGAGAGAATTTAATGGTAGCAAGTCTGAGTCACCAAAATCATGAATCCCAATCAGAACAGCAAATACAAGTGGGAAGTTTACCTAAAGGTAAGTGTAGTGTTTTTAAAAAATAAGTATTTTCCTATATGTTTACATATGTATGTATCATTTAGGTTTGGTTACATGATCATTGCAATGAATTGTTTATCAACCCTAATTTGTCTTTGTCTAACATGCACAAACAAAATGGTCTTGCACCATGCACAAGTGTCTTTTCCACCATTGGATCAAAAAGTCGCATCATATTTCATTTACTTTAATGGTGAGATTTATTGATCCAATGGTGGAAACTAGCTTGTGCATGATGCAAGACTTGTCTCACCTGTGCACCATAGAGTTGCCCTCCTAATTTTTTTTATCTTTTAACCCACTTGTAGAAATTAAAAAATAATTTGACTTTGGGTTATCTATAATAGATACCGTAGGGAGGCGCATAAAGTTTAAAGCTGTTGGGAAAGGTGGCAAAGCACATGCTAAAGAGAAGTTAATTGATAGCTCTAATGTAGTCAACCAAAACGACCATCGTATAAACAAAAAGTGTGCGCAACTTGGAGGAGGTAAGAAGTTTTTATTTGCTTAGTTTCTTTCATCTTTTGTCTTGAAGTTTCATTATTTTTTATTTTGAATTCTTTAGATACAAGAGAGAATTTAATGGTAGCAAGTCCATGTCACCAAAATCATGAATCACAATCAGAACAGCAAATACAAGTGGGACGTCGTGCTGAATATCCTATTTCTTTTGGTAGAATAGGTCAAAGTCTACCGAAAGGTAAGTGTAGTGTTTGTTAAAAATAAATGTGCAGGTATTTTCTTATATGTTTACCTATGTATCATTTAGGTTTGGTCTTGTAAAGAATTGTTTATCAACCTTGATTTTTTTATCTTTTAAACCAATTGTAAAAAATTAAAAAATAATTTGATTATGAATAGATACCATGGGGAGGTACAAAAGATTGAATGCTGTTAGAAAAAGTGGCAAAGCACAGGCTGAAGACCAATTAATTGATAGCTCTAAGGCAGTCAACCAAAATAACTACAATATAAGTGAAAAGTGTGCACAATCTGGAGGAGGTATGAAAATTAACTCTGTTAAGTTTCTTTCTTCCTTTTGAAGTTCCATGCTTTTTGATTTTGAATTCTTTATAGTATCTACAAGAAGGAGCCTAATGGTAGCAAGTCTTAACCACCAAAATGGCCAATCACAATCAGAACAAGTACAAGTGGGAAGTCATGTGGAATCTCCTACTTCATTTGGTAGAATGAGTAAAAGATTACTTAAAGGTAAGGGCCTGTTTGAATAGTGTTTTTAAAATTTTGTTTTCTATTTTTAAATACTACTATAAAAGAAGAAAATCTGATGAAATGGTTTCAAAATTCTTTTACAAAACTGAATCCTGTTTCATCATTTTAAAAACTAAGAACAAAAGTATTTATTTCCTCGTGTATAAATATTTTTTACCAAGCAAGTTTTTTTATTTCCTTGTTTATCAATTGGTTTATTTATTTTGTCCTCTAAAATCGTTTTTAAAAATTGATTTATACTATAGTTTACAAGAACCAAAGTCCAAAACACAATCAAACAAGCCCCAAGAGTATTGTTTTTTCTAAAATTATGTAAGTAATTTTGGTATTATTACATGTGTATCATTTAGGTTAGAATACACAATCATTGTAATCAATTGTGTGCGAACCATAATTTTTTTTTTTATCTTTTAAACCACTTGTAGACATTAAAAAATAAATTGGCTTTTTATATATGATAGATACCAATGAGAGGAACAAAAGGCCGAATGTTGTTCGAAAAAGTGGGAGACTACAAGCTGAAAAGCAATTAATTGATAGCTCTATTGAAGTCAACCAAAACAACCACAATATAAATGAAGAGTGTGACCAATTTGTTGGAGGTATGAAATTTTTGTTTGCTCAGTTTTTGTTAGGAAATAGGATAAGGATTAAGTGTGTGTTTGGTTGTGCGGTGGCGAGAATTGAGTCTGATAGAATTGATTTTGAGAGAATTGATTTAGTTAAAAGTGAGTTGAGTGTAAATTGATTTATGTTTGGATACATTTATGTAAGATTGATTCTTATCAATTCATGTTGTTTGGATAGTTTGAATTAAAATTGCTTTTGGATGTGAAATTACCAAAATGGACTTTAATTTTTTCTTTAAAAAGTTATTCAAGACTTAATTGTACAAATTGTTAAAGGGCAAATACATAATAAATGAAAGTGTAGCACCATAAATGCTTGGAATCAATTCTAATAAACGTAGAAGCTACACATTCTTGCTTCAGCTTGAATCGATTTTGGCCCCCAAAATCACGTTAAATGCTTGATATCCAAGCATATATATTTACACCAAATTTTCTTTTAGAAAGTAATAAGTAGTTAGTTAGAAAGTATCATTTGTACAATACATGTATAGAAGATTCATTTGTTATACATGATACTTCCTATCTAGTCAATCACTACCTTTATCCCTATATACAGAACCCTGTTGATTAAATCACGAGAATTAAGAAAGTTAGTAGTCATATCAAATTTGTTGACAATTAGTATTGTTCTACAAGCTTACCATTCAGGAGAGAGAACTAGTTTATGGATTTGGATCCTCTCCAACAAAGAAAAATGAGTGTGAGAGGAGAGAGAGAAAAGAGAAAATTTGAGAAAAAGGTTAAGAAAGTGAAAATGTTGGAGAGGGATCGAGAGAAGTTTCATTGTAGAGGATGTAATTCCTTATCCTATATCATAACAGTTTCTTTTATACTTTTGTCTTGAAGTTTCATAATTTTTTATTTTGAATTCTTCATAGTAGATACAAGAGGAAATCCAGTGGTAGCAAGTCCTAATCTCCAAAGTGACCAATCACAATCAGAGCAACAAATACCAGTGGAAAATCATGTTGAAACTCCTAATTCTGTTAGTAGAATGAGTAAAAGTTTAACTAAAGGTAACTGTTTGAATTTTTAAAATAAATATGTAAGTATATACCTTTGCATATGATGTATGGTTTGTAACGTGACATCCATACATGATTTAGGTCAGAAGAGGGTAAGAGGTTATACCCGAATGTCGGATGTGTGGAATCTACCAGATGGAGAATTCATATGTGTTGAAGTGGATACTTTAGGTAATCCTATAGGGTGGGAAGGTAAAAAACTTTTAAATGCACTGGGCTGCTTGGTAAGGAAGCACGAATATGCTCCCATCAATATTCTAAGCTGGAAAGACATGCCAGAGTTGAACATAACTAATATGTTTGAGTGGATACAGGTCTTGTAAATTTTTAAGTTCTGTTTGATTTCACTCTTTGAACATTCCTTTTTACTGTATGTCTTACGATTTTTATTTTTTTTTGCTAATTATCTCAATAATAGAGTAAGTTTCACTTTGTTCCTGAATTGACCGAGCAAACAAAGCAAATACTAAAAGATAACTTGAGTGCTAAGTGGAGGCAATTCAAACATGACTTGAAAGCAAAGGGATATGATGAAAACAAGACCGAGGAAGAAATGGCTGCCTACATCCCTGATAGAAGAGTTGATCCTTCTCAATATCGTGCTTTAGTACATCATTGGTGTTCCAAGGAGGGAAAGGTACATCTCTAATGTCATTGACCTTCACTATATATAGAAGTTATGTACAACACTGACTTTTTTATTTCCATGTTAAAGAAAATAAGTAACATCAACAAAAGGAATCGCTCAAAATACGAGGATTTTCATTGCATGGGAACCAAGAGTCTTCCAAGGTTCATTCACGAGGTGGTTTATTTCATTATTGTTTCTTTGTTTACCTGTCAACAACAACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGAATCAAACGACGCCATAGTGTTCTATCAAAAATCATGTCTTTGTTTACTTATATGAGTAATATGTTTTTAATTGTAATGTTAGCAATACTCTTATTTAAACCCTGTTGTACACATTTTATGTTTTGTTTATTACTGAAAAAGTGGGTACATTTTTTTATAAGTGATCAACTAAATTGACATTTTCTAAAAATGAATCAACCATGAAGAGTGCAATCAAAAGTGTGTTAAAAAGAGTGTTAGTGTTCTCATTTTATAATTATTTCTTAATATGAATGGGATTTGACATTTTTATTTCAAATGTTAGACAACTGAGGCTAATGGAGCACAACCTTCACGAGCTGAAATTTATATTGAGACTCGTACTCGTAAAGATGGCAGTATTGTGAATGAGAAGGCAGCTAATGTGATTGTAAGAATTTGAATTTTCAGGAATAAATTGAATTGCCGATGATTGAAGCTATTGATTGTAATGCATTGCAGTTGAACTGTACATAGTAAGTTTTGTCTTATATTTTGTGTAGGGTGAATTAAAAAAGCATATGGTGGAGGCAACAAGTTCACGAACTCCTCAAAAGACTCAAGATTCTACAAATTGGGAGAATGACGTATACTCAAGAGTAAGAGGCCCTGAAAGGAAAGGATCTGTACGTTGTCTTGGCAAGGTTCCACGTCATTCAAGTGGTTCATCTCGAAGATCTAATGTTGAAAATAGGGTCCACAAATTAGAAAATTTGCTTGGGAATCTTGTTTCTGTTCTTCAAACACGATTTTCAGCAGACGAACAAATTAATGATGTTTTGCAAGCTATAGCTCAAGAGGTATAAATTCCTATAATTCAACTTTTTGAAGAAATTTAACTATGATATGAAATAATGATTATGATGATTTACACTTAGGTACCTAATGCTCCAAGTACTCCTAATGATTTCTCTAGTAAGGATCAGCCAACTACAAGTGACAGTGATTGGGAAAATTGA

Protein sequence

>MS.gene55406.t1

MVKRRRLNVVRKSGKSQAKEKQLIYSSDEVNQNKHSKTEEFAQFEGVNTRKNQMLASLNHQNDVPQSEQQIHVGSHVEYPISYGRMGKSLPKDTLERRTRLSVRKSGKAQAEELLIHSSNEVNQNSHRINVECAHCGGGTRENLMVASLSHQNHESQSEQQIQVGSLPKDTVGRRIKFKAVGKGGKAHAKEKLIDSSNVVNQNDHRINKKCAQLGGDTRENLMVASPCHQNHESQSEQQIQVGRRAEYPISFGRIGQSLPKDTMGRYKRLNAVRKSGKAQAEDQLIDSSKAVNQNNYNISEKCAQSGGVSTRRSLMVASLNHQNGQSQSEQVQVGSHVESPTSFGRMSKRLLKDTNERNKRPNVVRKSGRLQAEKQLIDSSIEVNQNNHNINEECDQFVGDTRGNPVVASPNLQSDQSQSEQQIPVENHVETPNSVSRMSKSLTKGQKRVRGYTRMSDVWNLPDGEFICVEVDTLGNPIGWEGKKLLNALGCLVRKHEYAPINILSWKDMPELNITNMFEWIQSKFHFVPELTEQTKQILKDNLSAKWRQFKHDLKAKGYDENKTEEEMAAYIPDRRVDPSQYRALVHHWCSKEGKKISNINKRNRSKYEDFHCMGTKSLPRFIHETTEANGAQPSRAEIYIETRTRKDGSIVNEKAANVIGELKKHMVEATSSRTPQKTQDSTNWENDVYSRVRGPERKGSVRCLGKVPRHSSGSSRRSNVENRVHKLENLLGNLVSVLQTRFSADEQINDVLQAIAQEVPNAPSTPNDFSSKDQPTTSDSDWEN