AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53409


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53409.t1 MTR_3g045460 97.192 819 23 0 1 819 1 819 0.0 1659
MS.gene53409.t1 MTR_3g045460 95.788 831 23 1 1 819 1 831 0.0 1650
MS.gene53409.t1 MTR_1g055365 31.438 299 179 4 27 309 25 313 2.14e-42 165
MS.gene53409.t1 MTR_1g055365 31.741 293 183 5 192 471 25 313 1.13e-40 160
MS.gene53409.t1 MTR_1g055365 27.517 298 207 4 352 642 25 320 2.24e-33 137
MS.gene53409.t1 MTR_1g055365 35.484 155 96 2 493 646 2 153 9.72e-20 94.7
MS.gene53409.t1 MTR_1g055365 32.143 140 93 1 7 144 174 313 1.48e-17 87.8
MS.gene53409.t1 MTR_8g041580 30.351 313 185 7 512 817 16 302 4.92e-35 135
MS.gene53409.t1 MTR_8g041580 37.589 141 87 1 16 155 11 151 1.86e-26 110
MS.gene53409.t1 MTR_8g041580 38.346 133 81 1 185 316 15 147 5.12e-23 100
MS.gene53409.t1 MTR_8g041580 36.957 138 84 2 342 478 12 147 6.73e-22 97.8
MS.gene53409.t1 MTR_3g070080 20.782 486 333 9 27 462 11 494 5.55e-21 98.6
MS.gene53409.t1 MTR_3g070080 20.782 486 333 9 27 462 74 557 9.22e-21 98.2
MS.gene53409.t1 MTR_7g102860 25.497 302 188 5 517 817 38 303 1.16e-20 94.0
MS.gene53409.t1 MTR_7g102860 31.646 158 101 2 20 170 32 189 1.64e-20 93.6
MS.gene53409.t1 MTR_7g102860 31.967 122 82 1 189 309 36 157 1.27e-17 85.1
MS.gene53409.t1 MTR_7g102860 26.761 142 101 2 345 485 32 171 1.28e-14 75.9
MS.gene53409.t1 MTR_5g022570 37.500 120 75 0 191 310 22 141 1.90e-19 90.1
MS.gene53409.t1 MTR_5g022570 28.966 145 94 1 27 171 23 158 6.49e-18 85.9
MS.gene53409.t1 MTR_5g022570 31.967 122 81 1 351 472 22 141 4.20e-15 77.4
MS.gene53409.t1 MTR_5g022570 23.256 301 199 4 518 817 23 292 2.91e-14 74.7
MS.gene53409.t1 MTR_8g014565 31.967 122 81 1 25 144 17 138 1.58e-13 72.0
MS.gene53409.t1 MTR_8g014565 28.030 132 93 1 182 311 9 140 3.22e-11 65.1
MS.gene53409.t1 MTR_6g081975 31.967 122 81 1 25 144 17 138 1.71e-13 71.6
MS.gene53409.t1 MTR_6g081975 28.030 132 93 1 182 311 9 140 2.31e-11 65.5
MS.gene53409.t1 MTR_1g106600 28.571 175 121 3 15 185 9 183 2.06e-13 72.8
MS.gene53409.t1 MTR_1g106600 24.024 333 227 11 507 817 7 335 1.71e-11 67.0
MS.gene53409.t1 MTR_6g025650 28.571 175 121 3 15 185 9 183 2.13e-13 72.8
MS.gene53409.t1 MTR_6g025650 24.024 333 227 11 507 817 7 335 1.66e-11 67.0
MS.gene53409.t1 MTR_6g018520 28.571 175 121 3 15 185 9 183 2.13e-13 72.8
MS.gene53409.t1 MTR_6g018520 24.024 333 227 11 507 817 7 335 1.66e-11 67.0
MS.gene53409.t1 MTR_2g032805 30.000 170 107 3 25 182 17 186 3.16e-13 71.2
MS.gene53409.t1 MTR_2g032805 27.083 144 103 1 182 323 9 152 5.52e-12 67.4
MS.gene53409.t1 MTR_7g094380 29.518 166 111 2 26 185 8 173 1.70e-12 69.7
MS.gene53409.t1 MTR_7g110505 31.967 122 81 1 25 144 17 138 1.85e-12 69.7
MS.gene53409.t1 MTR_0697s0010 27.465 142 98 3 27 163 17 158 3.17e-12 68.9
MS.gene53409.t1 MTR_0697s0010 32.117 137 86 4 518 648 17 152 5.87e-11 65.1
MS.gene53409.t1 MTR_1g106608 27.429 175 123 3 15 185 9 183 1.46e-11 67.0
MS.gene53409.t1 MTR_1g106608 23.894 339 234 12 497 817 3 335 3.04e-11 66.2
MS.gene53409.t1 MTR_7g061400 33.684 95 60 2 356 449 1 93 2.34e-11 61.6
MS.gene53409.t1 MTR_2g076540 29.697 165 110 2 27 185 9 173 2.80e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53409.t1 AT2G24960 29.829 818 485 18 27 818 15 769 7.78e-106 343
MS.gene53409.t1 AT2G24960 29.193 483 316 5 181 657 4 466 1.13e-64 231
MS.gene53409.t1 AT2G24960 32.012 328 203 3 7 315 308 634 1.28e-47 182
MS.gene53409.t1 AT2G24960 29.013 841 485 19 27 818 15 792 1.27e-100 330
MS.gene53409.t1 AT2G24960 27.866 506 316 6 181 657 4 489 6.21e-60 218
MS.gene53409.t1 AT2G24960 29.915 351 203 4 7 315 308 657 3.64e-43 169
MS.gene53409.t1 AT4G02210 30.126 478 267 13 352 818 14 435 1.68e-58 206
MS.gene53409.t1 AT4G02210 33.106 293 189 4 26 311 13 305 2.04e-49 181
MS.gene53409.t1 AT4G02210 28.446 341 217 5 183 506 5 335 4.82e-41 157
MS.gene53409.t1 AT4G02210 30.126 478 267 13 352 818 14 435 1.68e-58 206
MS.gene53409.t1 AT4G02210 33.106 293 189 4 26 311 13 305 2.04e-49 181
MS.gene53409.t1 AT4G02210 28.446 341 217 5 183 506 5 335 4.82e-41 157
MS.gene53409.t1 AT4G02550 31.090 312 185 5 512 817 16 303 7.63e-37 141
MS.gene53409.t1 AT4G02550 37.500 136 84 1 21 155 16 151 4.55e-26 110
MS.gene53409.t1 AT4G02550 37.681 138 79 3 347 479 13 148 4.97e-22 98.2
MS.gene53409.t1 AT4G02550 37.692 130 80 1 188 316 18 147 2.87e-21 95.9
MS.gene53409.t1 AT4G02550 31.090 312 185 5 512 817 16 303 7.63e-37 141
MS.gene53409.t1 AT4G02550 37.500 136 84 1 21 155 16 151 4.55e-26 110
MS.gene53409.t1 AT4G02550 37.681 138 79 3 347 479 13 148 4.97e-22 98.2
MS.gene53409.t1 AT4G02550 37.692 130 80 1 188 316 18 147 2.87e-21 95.9
MS.gene53409.t1 AT4G02550 31.090 312 185 5 512 817 31 318 1.46e-36 140
MS.gene53409.t1 AT4G02550 37.500 136 84 1 21 155 31 166 6.99e-26 109
MS.gene53409.t1 AT4G02550 37.984 129 77 2 352 479 37 163 1.00e-21 97.4
MS.gene53409.t1 AT4G02550 38.889 126 76 1 192 316 37 162 5.55e-21 95.5
MS.gene53409.t1 AT4G02550 30.293 307 165 4 512 817 16 274 1.21e-33 131
MS.gene53409.t1 AT4G02550 40.984 122 71 1 21 141 16 137 5.63e-26 108
MS.gene53409.t1 AT4G02550 37.681 138 79 3 347 479 13 148 2.72e-22 98.2
MS.gene53409.t1 AT4G02550 37.692 130 80 1 188 316 18 147 1.17e-21 96.3
MS.gene53409.t1 AT4G02550 30.293 307 165 4 512 817 16 274 1.21e-33 131
MS.gene53409.t1 AT4G02550 40.984 122 71 1 21 141 16 137 5.63e-26 108
MS.gene53409.t1 AT4G02550 37.681 138 79 3 347 479 13 148 2.72e-22 98.2
MS.gene53409.t1 AT4G02550 37.692 130 80 1 188 316 18 147 1.17e-21 96.3
MS.gene53409.t1 AT5G05800 23.986 296 213 3 26 316 6 294 2.71e-20 95.1
MS.gene53409.t1 AT5G05800 22.973 296 213 5 192 479 7 295 3.74e-16 82.4
MS.gene53409.t1 AT5G05800 19.366 284 226 2 352 635 7 287 9.06e-12 68.6
MS.gene53409.t1 AT5G05800 23.986 296 213 3 26 316 6 294 2.71e-20 95.1
MS.gene53409.t1 AT5G05800 22.973 296 213 5 192 479 7 295 3.74e-16 82.4
MS.gene53409.t1 AT5G05800 19.366 284 226 2 352 635 7 287 9.06e-12 68.6
MS.gene53409.t1 AT5G05800 23.986 296 213 3 26 316 6 294 2.71e-20 95.1
MS.gene53409.t1 AT5G05800 22.973 296 213 5 192 479 7 295 3.74e-16 82.4
MS.gene53409.t1 AT5G05800 19.366 284 226 2 352 635 7 287 9.06e-12 68.6
MS.gene53409.t1 AT5G05800 23.986 296 213 3 26 316 6 294 2.71e-20 95.1
MS.gene53409.t1 AT5G05800 22.973 296 213 5 192 479 7 295 3.74e-16 82.4
MS.gene53409.t1 AT5G05800 19.366 284 226 2 352 635 7 287 9.06e-12 68.6
MS.gene53409.t1 AT5G05800 23.986 296 213 3 26 316 6 294 2.71e-20 95.1
MS.gene53409.t1 AT5G05800 22.973 296 213 5 192 479 7 295 3.74e-16 82.4
MS.gene53409.t1 AT5G05800 19.366 284 226 2 352 635 7 287 9.06e-12 68.6
MS.gene53409.t1 AT3G11290 22.517 302 208 4 26 316 6 292 3.43e-17 85.9
MS.gene53409.t1 AT3G11290 21.212 297 217 5 346 636 1 286 2.89e-15 79.7
MS.gene53409.t1 AT3G11290 22.517 302 208 4 26 316 6 292 3.43e-17 85.9
MS.gene53409.t1 AT3G11290 21.212 297 217 5 346 636 1 286 2.89e-15 79.7
MS.gene53409.t1 AT2G29880 23.585 318 202 9 506 808 10 301 2.56e-11 66.2

Find 157 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATGTTCGAATTCTTAA+AGG 0.134276 3.2:-32344015 MS.gene53409:CDS
TCCGCCATGAATGCAAAATT+TGG 0.139555 3.2:-32347453 MS.gene53409:CDS
TGTCTCATGCTGGATTTAAA+TGG 0.185772 3.2:-32347353 MS.gene53409:CDS
TCTTGCCCAGAAGTTCTTTC+AGG 0.231519 3.2:+32344208 None:intergenic
TGATATCCTGAAAGAACTTC+TGG 0.242491 3.2:-32344214 MS.gene53409:CDS
CTACGAGTCTGGTATACTTT+TGG 0.269981 3.2:+32348227 None:intergenic
ACTGACAATACAACGGAAAA+AGG 0.283006 3.2:-32343853 MS.gene53409:CDS
GAGCAGTTCTGCACTATCTT+TGG 0.306080 3.2:-32344552 MS.gene53409:CDS
AGACTTGGAGGAAGCAGTTT+GGG 0.306974 3.2:-32347986 MS.gene53409:CDS
AACATGGAATGAATATATTA+AGG 0.326139 3.2:-32343551 MS.gene53409:intron
ACCGAGGAAAATACATAGTA+TGG 0.339128 3.2:-32348175 MS.gene53409:CDS
TGTATGGAATGAATATATTA+AGG 0.343920 3.2:-32344136 MS.gene53409:intron
GACTGATGTGCTTGCAGAGC+AGG 0.350521 3.2:-32348129 MS.gene53409:CDS
AAAGCATTAAATGAAAAGTT+TGG 0.356406 3.2:-32348047 MS.gene53409:CDS
GCTCGGAAAATCTTGGCATC+AGG 0.370189 3.2:+32347762 None:intergenic
AAGACTTGGAGGAAGCAGTT+TGG 0.374506 3.2:-32347987 MS.gene53409:CDS
TGCATTGGAAGCTGCTGTGC+AGG 0.375037 3.2:-32344313 MS.gene53409:CDS
AGATTGCTATCATAGTTAAC+TGG 0.375879 3.2:+32344456 None:intergenic
CCGCCATGAATGCAAAATTT+GGG 0.378041 3.2:-32347452 MS.gene53409:CDS
CCTCAGATGGACAGAGGAAA+TGG 0.383394 3.2:-32347568 MS.gene53409:CDS
GCTTCTTCCATGTTCTTAAC+CGG 0.383696 3.2:+32343656 None:intergenic
TTTCCCATAGGGGATTTGTT+TGG 0.383929 3.2:-32347947 MS.gene53409:CDS
ATGAGGAAGCTAGTGGAAAT+TGG 0.387039 3.2:-32343001 MS.gene53409:CDS
TATGAGGTGGACAAGTGATA+TGG 0.390129 3.2:-32344415 MS.gene53409:CDS
GGACTTTGCTCGGAAAATCT+TGG 0.390570 3.2:+32347755 None:intergenic
TCCATCTGAGGTGCTTAGTC+AGG 0.390971 3.2:+32347580 None:intergenic
CAGGGTTCATCTGAGCAAAC+AGG 0.391656 3.2:-32342783 MS.gene53409:CDS
TCTGCATTCTCTACAAAGTT+AGG 0.392861 3.2:+32342942 None:intergenic
ATAGAGAACTTCAACGAGTT+AGG 0.401609 3.2:-32343038 MS.gene53409:CDS
CAACATGGATTGACTACATC+CGG 0.415622 3.2:-32347296 MS.gene53409:CDS
GTCATTCCAAACAGAATCAT+TGG 0.416770 3.2:+32347899 None:intergenic
GACTTACCGTGCTAGGGTCC+TGG 0.419215 3.2:-32344583 MS.gene53409:CDS
CCTTTAAGAATTCGAACATC+AGG 0.419302 3.2:+32344015 None:intergenic
CTCGTGCAGCAAATTAAACT+TGG 0.426472 3.2:-32344372 MS.gene53409:CDS
CATAGTATGGACAAGTGAAA+TGG 0.427038 3.2:-32348162 MS.gene53409:CDS
GATCACTGCTCGTGCTAAGA+TGG 0.427644 3.2:-32343929 MS.gene53409:CDS
TCAGATAAAATGACAAGATC+TGG 0.428735 3.2:+32347621 None:intergenic
AACGAGTTAGGTTTGATTGT+TGG 0.432874 3.2:-32343026 MS.gene53409:CDS
GATGCAAAGGCTCATTGAAA+TGG 0.433824 3.2:+32344529 None:intergenic
GTCTCATGCTGGATTTAAAT+GGG 0.434237 3.2:-32347352 MS.gene53409:CDS
GCACGGTAAGTCCTTGCATC+TGG 0.435678 3.2:+32344594 None:intergenic
GCTTGCAGAGCAGGTGGAAA+AGG 0.440693 3.2:-32348120 MS.gene53409:CDS
CTTGTCAAGCAAGTGATGTT+GGG 0.443237 3.2:-32343781 MS.gene53409:CDS
CTTCATCAATTGCATTATCA+TGG 0.444381 3.2:+32342808 None:intergenic
CTTGCAGAGCAGGTGGAAAA+GGG 0.446931 3.2:-32348119 MS.gene53409:CDS
AGTGCAGCGGCAAATGCTGC+CGG 0.447207 3.2:+32348071 None:intergenic
ATGCAGCAGGTCTTAGTTTG+TGG 0.451572 3.2:+32344331 None:intergenic
GAGAAAGCATTTCCTTCATA+AGG 0.452295 3.2:+32343626 None:intergenic
GATTACAGATGATAATGTTA+TGG 0.457865 3.2:-32343902 MS.gene53409:CDS
TATTCCAAACAAATCCCCTA+TGG 0.461311 3.2:+32347943 None:intergenic
TCATTCGCTGACATCGGTGT+TGG 0.462864 3.2:+32342843 None:intergenic
CAAACTAAGACCTGCTGCAT+TGG 0.470974 3.2:-32344328 MS.gene53409:CDS
AAGGAACAAAACTGCGTGCT+TGG 0.471049 3.2:-32342637 MS.gene53409:CDS
TTGTGGCCAATGATTCTGTT+TGG 0.472899 3.2:-32347905 MS.gene53409:CDS
GAAGGAACTCATTTCCCATA+GGG 0.476655 3.2:-32347958 MS.gene53409:CDS
TCTTGTCAAGCAAGTGATGT+TGG 0.482747 3.2:-32343782 MS.gene53409:CDS
TCGGATAGCCGATGCATTGA+CGG 0.484279 3.2:-32342661 MS.gene53409:CDS
TGTGACATGGACAGATGAAA+TGG 0.487484 3.2:-32343824 MS.gene53409:CDS
ATGCAAGGACTTACCGTGCT+AGG 0.489191 3.2:-32344590 MS.gene53409:CDS
GCTACAAATGATGAATGTTA+TGG 0.489207 3.2:-32342697 MS.gene53409:CDS
CCGTTGTATTGTCAGTTCCA+TGG 0.490047 3.2:+32343860 None:intergenic
CAGCAGTAGAGCTACGAGTC+TGG 0.490478 3.2:+32348216 None:intergenic
GATATCCTGAAAGAACTTCT+GGG 0.492221 3.2:-32344213 MS.gene53409:CDS
TTGGAATAAGACACAAAAGA+TGG 0.498567 3.2:-32347928 MS.gene53409:CDS
AACTGCGTGCTTGGAGGAAG+TGG 0.499688 3.2:-32342628 MS.gene53409:CDS
GAGGAGCTGTGCATAATCAT+TGG 0.501824 3.2:-32343973 MS.gene53409:CDS
GCTCTGCAAGCACATCAGTC+AGG 0.503069 3.2:+32348132 None:intergenic
TCGTAGATCAAGTGAGGAAA+GGG 0.503673 3.2:-32347524 MS.gene53409:CDS
TTTGGCATGCATATGACAAA+AGG 0.503730 3.2:-32348029 MS.gene53409:CDS
AAGATGTAATGAAGCATATG+AGG 0.505103 3.2:-32344431 MS.gene53409:CDS
GTTCCTTTCCGTCAATGCAT+CGG 0.506236 3.2:+32342653 None:intergenic
ATGAGATCATCATCAAAGTC+GGG 0.509311 3.2:+32342585 None:intergenic
GAACAAAACTGCGTGCTTGG+AGG 0.509610 3.2:-32342634 MS.gene53409:CDS
AGAACTGCTCATAGTTCTCC+AGG 0.509665 3.2:+32344565 None:intergenic
TTCCTCGGTCTGTAGCTCCT+CGG 0.513199 3.2:+32348189 None:intergenic
TAGCCGATGCATTGACGGAA+AGG 0.514422 3.2:-32342656 MS.gene53409:CDS
ACAGCAGCTTCCAATGCAGC+AGG 0.515678 3.2:+32344318 None:intergenic
GAGGAAATGGATCACTGGCT+TGG 0.518992 3.2:-32347555 MS.gene53409:CDS
TTATCTGAAACACAAACTGA+TGG 0.520424 3.2:-32347606 MS.gene53409:CDS
TGGGCAAGAGTGGCTTCGAA+TGG 0.523735 3.2:-32344194 MS.gene53409:CDS
CTCGGAAAATCTTGGCATCA+GGG 0.526005 3.2:+32347763 None:intergenic
AAAATCGGCTGAAGACTTGG+AGG 0.534868 3.2:-32347998 MS.gene53409:CDS
TGAAGGAACTCATTTCCCAT+AGG 0.536252 3.2:-32347959 MS.gene53409:CDS
TACATCAGCGTGCTCTTCAA+AGG 0.537348 3.2:+32342902 None:intergenic
CCATTTCCTCTGTCCATCTG+AGG 0.542114 3.2:+32347568 None:intergenic
GGGCAAGAGTGGCTTCGAAT+GGG 0.544639 3.2:-32344193 MS.gene53409:CDS
TAATGCAATTGATGAAGTGC+AGG 0.545826 3.2:-32342802 MS.gene53409:CDS
TCCTCTTCATTCGCTGACAT+CGG 0.546434 3.2:+32342837 None:intergenic
AAGGAAATTCTGTCTCATGC+TGG 0.546619 3.2:-32347363 MS.gene53409:CDS
ATCACTGCTCGTGCTAAGAT+GGG 0.546712 3.2:-32343928 MS.gene53409:CDS
GGTGGAAAAGGGGAATAAAG+TGG 0.549835 3.2:-32348108 MS.gene53409:CDS
TGCAAGGACTTACCGTGCTA+GGG 0.550347 3.2:-32344589 MS.gene53409:CDS
CAATAGAAAACATTAAAAGC+CGG 0.555716 3.2:-32343675 MS.gene53409:CDS
GGACAGAGGAAATGGATCAC+TGG 0.557026 3.2:-32347560 MS.gene53409:CDS
TTAAAAGCCGGTTAAGAACA+TGG 0.557379 3.2:-32343663 MS.gene53409:CDS
CTTGGAGGAAGTGGTTGAAA+AGG 0.558642 3.2:-32342619 MS.gene53409:CDS
ACCTGACTAAGCACCTCAGA+TGG 0.560083 3.2:-32347581 MS.gene53409:CDS
ATTCCAAACAAATCCCCTAT+GGG 0.560335 3.2:+32347944 None:intergenic
AATGTTATGGCTGCTGATAT+CGG 0.563434 3.2:-32342684 MS.gene53409:CDS
CTCGTAGATCAAGTGAGGAA+AGG 0.564355 3.2:-32347525 MS.gene53409:CDS
GAAGCAGTATGTCCTTATGA+AGG 0.567185 3.2:-32343638 MS.gene53409:CDS
ATGAAGGAAATGCTTTCTCG+TGG 0.569876 3.2:-32343622 MS.gene53409:CDS
TCTCTACAAAGTTAGGAGCA+AGG 0.571869 3.2:+32342949 None:intergenic
AATGAGATCATCATCAAAGT+CGG 0.574677 3.2:+32342584 None:intergenic
GAAGGAAATGCTTTCTCGTG+GGG 0.575299 3.2:-32343620 MS.gene53409:CDS
TGTTTGGAATGACTACATCA+AGG 0.575539 3.2:-32347889 MS.gene53409:intron
TGAAGGAAATGCTTTCTCGT+GGG 0.576741 3.2:-32343621 MS.gene53409:CDS
AGGTTTGATTGTTGGCAATG+AGG 0.578254 3.2:-32343018 MS.gene53409:CDS
ATTCAAAGCAGCCATCAAAA+CGG 0.578397 3.2:-32342740 MS.gene53409:CDS
AATTCGAAAGGCTCGTCACA+AGG 0.578854 3.2:+32344492 None:intergenic
AGTGGATAACATCTTGAAGC+CGG 0.582263 3.2:-32348090 MS.gene53409:CDS
TTATGTTTCGATGAGAAGAG+AGG 0.583010 3.2:-32342543 MS.gene53409:CDS
CCTTTCGAATTTGAAAGTGT+CGG 0.583364 3.2:-32344480 MS.gene53409:CDS
ACGAGTCATCAGAAACTATG+AGG 0.585599 3.2:-32343992 MS.gene53409:CDS
AAGGAACTCATTTCCCATAG+GGG 0.588405 3.2:-32347957 MS.gene53409:CDS
TCATTGCAGATGATTCTGTA+TGG 0.588981 3.2:-32344152 MS.gene53409:CDS
GCACGAGCAGTGATCATACC+TGG 0.589570 3.2:+32343937 None:intergenic
ACCGATGTCAGCGAATGAAG+AGG 0.590681 3.2:-32342838 MS.gene53409:CDS
CATTTGTAGCATCACATCAT+CGG 0.591675 3.2:+32342710 None:intergenic
TCAGCGTGCTCTTCAAAGGT+AGG 0.596021 3.2:+32342906 None:intergenic
TAAGACACAAAAGATGGTTG+TGG 0.597200 3.2:-32347922 MS.gene53409:CDS
GTGGGATGAAGGACGTAAGA+TGG 0.598230 3.2:-32343590 MS.gene53409:CDS
TCAGCTTGCTCTTCAAAGTG+AGG 0.600479 3.2:+32342870 None:intergenic
CATCTGAGCAAACAGGGGCA+AGG 0.602114 3.2:-32342776 MS.gene53409:CDS
TTCAGAAACATCGAGATGCT+AGG 0.602172 3.2:-32343079 MS.gene53409:intron
AAAGAACTTCTGGGCAAGAG+TGG 0.608647 3.2:-32344204 MS.gene53409:CDS
TTATGGCTGCTGATATCGGT+CGG 0.613273 3.2:-32342680 MS.gene53409:CDS
AACATGGATTGACTACATCC+GGG 0.613940 3.2:-32347295 MS.gene53409:intron
ATGTAATGAAGCATATGAGG+TGG 0.614151 3.2:-32344428 MS.gene53409:CDS
ATTTAATGCTTTCAGTGCAG+CGG 0.616263 3.2:+32348058 None:intergenic
AAGGAAATGCTTTCTCGTGG+GGG 0.617396 3.2:-32343619 MS.gene53409:CDS
ACAGAGTCATTACGATGCAA+AGG 0.619841 3.2:+32344516 None:intergenic
CCGACACTTTCAAATTCGAA+AGG 0.620394 3.2:+32344480 None:intergenic
GTCAGACACATCCAGATGCA+AGG 0.621676 3.2:-32344605 MS.gene53409:intron
TGATGTGCTTGCAGAGCAGG+TGG 0.622701 3.2:-32348126 MS.gene53409:CDS
AGGGTTCATCTGAGCAAACA+GGG 0.623988 3.2:-32342782 MS.gene53409:CDS
GGAAGCTAGTGGAAATTGGT+CGG 0.628251 3.2:-32342997 MS.gene53409:CDS
GACTTGGAGGAAGCAGTTTG+GGG 0.630867 3.2:-32347985 MS.gene53409:CDS
GAAACAGTATGAAATAGCAA+AGG 0.634134 3.2:-32347382 MS.gene53409:CDS
TCATTGCAAATGATTCAACA+TGG 0.639584 3.2:-32347311 MS.gene53409:CDS
GACCGAGGAGCTACAGACCG+AGG 0.639930 3.2:-32348191 MS.gene53409:CDS
TTGCAGAGCAGGTGGAAAAG+GGG 0.644663 3.2:-32348118 MS.gene53409:CDS
AGTTCTCCAGGACCCTAGCA+CGG 0.650830 3.2:+32344577 None:intergenic
TGCTTTGAATGTGATGACGA+AGG 0.651831 3.2:+32342753 None:intergenic
ATTGGTCACATTGATCCACC+AGG 0.656274 3.2:-32343955 MS.gene53409:CDS
GTTGGCAATGAGGAAGCTAG+TGG 0.659048 3.2:-32343008 MS.gene53409:CDS
AGATTCTCGTAGATCAAGTG+AGG 0.663269 3.2:-32347530 MS.gene53409:CDS
CCATGGAACTGACAATACAA+CGG 0.668437 3.2:-32343860 MS.gene53409:CDS
GCTCAAGAGACAAATTACCA+TGG 0.670220 3.2:-32343877 MS.gene53409:CDS
TAGAGTAGCTATGTAAGCTG+AGG 0.672740 3.2:+32343732 None:intergenic
CGAGCAGTGATCATACCTGG+TGG 0.692590 3.2:+32343940 None:intergenic
TTGTTGCAACTGATTCAACA+TGG 0.692620 3.2:-32343567 MS.gene53409:CDS
AGCTCTACTGCTGTAGACCG+AGG 0.701306 3.2:-32348206 MS.gene53409:CDS
AATGCAATTGATGAAGTGCA+GGG 0.713782 3.2:-32342801 MS.gene53409:CDS
TAAGCACCTCAGATGGACAG+AGG 0.715946 3.2:-32347574 MS.gene53409:CDS
GGGTTCATCTGAGCAAACAG+GGG 0.721870 3.2:-32342781 MS.gene53409:CDS
TGGTTGTTGAAACGTTTGCG+TGG 0.732707 3.2:-32342480 MS.gene53409:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTAAATAAAAACTAG+AGG + chr3.2:32343877-32343896 None:intergenic 10.0%
!!! ATAAATATTTTGTAAAACAT+TGG + chr3.2:32343478-32343497 None:intergenic 10.0%
!!! ATTAAATATAATTGTCATTT+TGG + chr3.2:32344336-32344355 None:intergenic 10.0%
!! AAATGTTCAAAGAATTATTA+AGG - chr3.2:32344930-32344949 MS.gene53409:intron 15.0%
!! AACAGAAAACTATAAATTAA+TGG + chr3.2:32342877-32342896 None:intergenic 15.0%
!! AATACAGAAATAGTAAAATA+CGG + chr3.2:32345974-32345993 None:intergenic 15.0%
!! ACAGAAAACTATAAATTAAT+GGG + chr3.2:32342876-32342895 None:intergenic 15.0%
!! ACATATACACTAAATATTAA+CGG - chr3.2:32345213-32345232 MS.gene53409:intron 15.0%
!! ATTGAAAAATTGTAAATTGT+GGG - chr3.2:32344284-32344303 MS.gene53409:CDS 15.0%
!! TATTGAAAAATTGTAAATTG+TGG - chr3.2:32344283-32344302 MS.gene53409:CDS 15.0%
!! TCTCATTAATGAAATTAATT+TGG - chr3.2:32343621-32343640 MS.gene53409:CDS 15.0%
!!! AATTAATTTGGAATGAAATA+AGG - chr3.2:32343633-32343652 MS.gene53409:CDS 15.0%
!!! TAATTTATCATAGTTTTCAA+TGG + chr3.2:32342978-32342997 None:intergenic 15.0%
!!! TCTGTTGATTTTAAATTATT+AGG - chr3.2:32344118-32344137 MS.gene53409:intron 15.0%
!!! TTAAATTAGAAAGTTTTTGT+TGG - chr3.2:32344203-32344222 MS.gene53409:CDS 15.0%
!!! TTTTTTTTTTTTGGTGAATA+AGG - chr3.2:32345329-32345348 MS.gene53409:intron 15.0%
!! AACATGGAATGAATATATTA+AGG - chr3.2:32347158-32347177 MS.gene53409:intron 20.0%
!! AATTTCATTAATGAGAACAA+TGG + chr3.2:32343617-32343636 None:intergenic 20.0%
!! ACTAATTGACAATTCAAAAT+TGG - chr3.2:32345756-32345775 MS.gene53409:intron 20.0%
!! ATGAAGTTATACAGTAAAAT+TGG - chr3.2:32343806-32343825 MS.gene53409:CDS 20.0%
!! CAGAAAACTATAAATTAATG+GGG + chr3.2:32342875-32342894 None:intergenic 20.0%
!! CATATACACTAAATATTAAC+GGG - chr3.2:32345214-32345233 MS.gene53409:intron 20.0%
!! GACTACTTTAAATTTCTATT+CGG - chr3.2:32346607-32346626 MS.gene53409:intron 20.0%
!! GGAAAAATAAAAAATTTCTC+AGG - chr3.2:32345235-32345254 MS.gene53409:intron 20.0%
!! GTTATTAAGATGATAAAAAC+TGG - chr3.2:32344465-32344484 MS.gene53409:CDS 20.0%
!! TGTATGGAATGAATATATTA+AGG - chr3.2:32346573-32346592 MS.gene53409:intron 20.0%
!! TTAAAAATCGTCTTAAAACA+TGG - chr3.2:32343302-32343321 MS.gene53409:intron 20.0%
!!! AAAGCATTAAATGAAAAGTT+TGG - chr3.2:32342662-32342681 MS.gene53409:CDS 20.0%
!!! AAATATAATTGTCATTTTGG+TGG + chr3.2:32344333-32344352 None:intergenic 20.0%
!!! AATATAATTGTCATTTTGGT+GGG + chr3.2:32344332-32344351 None:intergenic 20.0%
!!! ACTATTTCTGTATTTTTCAT+TGG - chr3.2:32345980-32345999 MS.gene53409:intron 20.0%
!!! CATAGCAAATAACTTATTTT+TGG - chr3.2:32344956-32344975 MS.gene53409:intron 20.0%
!!! TAAAATACGGCTTTAAATTA+CGG + chr3.2:32345961-32345980 None:intergenic 20.0%
!!! TATTTTTTGTTTGTGCATTT+TGG - chr3.2:32347408-32347427 MS.gene53409:CDS 20.0%
!!! TCTTTTTTCTATTACTGTTA+AGG - chr3.2:32343744-32343763 MS.gene53409:CDS 20.0%
!!! TGCTACATATAATTTTCTTT+GGG + chr3.2:32344043-32344062 None:intergenic 20.0%
!!! TGTTTTCTATTGTTAAATTC+AGG + chr3.2:32347026-32347045 None:intergenic 20.0%
!!! TTAAGCTTATTACATTTTTC+TGG - chr3.2:32346660-32346679 MS.gene53409:intron 20.0%
!!! TTGCTACATATAATTTTCTT+TGG + chr3.2:32344044-32344063 None:intergenic 20.0%
!!! TTTAGTTTCAGAAGTAATTA+TGG - chr3.2:32347194-32347213 MS.gene53409:intron 20.0%
! AACTGGACTTAACAATAAAA+AGG - chr3.2:32344482-32344501 MS.gene53409:CDS 25.0%
! AAGACTGTTAATTATGCAAA+AGG - chr3.2:32345723-32345742 MS.gene53409:intron 25.0%
! AATTCAAGATTAATGTGTTC+CGG - chr3.2:32344147-32344166 MS.gene53409:CDS 25.0%
! ACTGGACTTAACAATAAAAA+GGG - chr3.2:32344483-32344502 MS.gene53409:CDS 25.0%
! AGACTGTTAATTATGCAAAA+GGG - chr3.2:32345724-32345743 MS.gene53409:intron 25.0%
! AGATAATCCTGATTGATTAT+TGG - chr3.2:32347597-32347616 MS.gene53409:CDS 25.0%
! ATAATCAATCAGGATTATCT+AGG + chr3.2:32347597-32347616 None:intergenic 25.0%
! ATATGTGACTGTTAATGTAA+TGG + chr3.2:32345199-32345218 None:intergenic 25.0%
! CAAAAGGACACATAAAAAAT+CGG - chr3.2:32342696-32342715 MS.gene53409:CDS 25.0%
! CAATAGAAAACATTAAAAGC+CGG - chr3.2:32347034-32347053 MS.gene53409:intron 25.0%
! CACATTAATCTTGAATTTGA+AGG + chr3.2:32344144-32344163 None:intergenic 25.0%
! TAACTTCATCTAAATAGCAT+TGG + chr3.2:32343795-32343814 None:intergenic 25.0%
! TACATAGAGAAGATAACAAA+TGG + chr3.2:32347312-32347331 None:intergenic 25.0%
! TTAAAAACCGTCTTAAAACA+TGG - chr3.2:32346461-32346480 MS.gene53409:intron 25.0%
! TTTCTTTGGGCAATATTAAA+AGG + chr3.2:32344030-32344049 None:intergenic 25.0%
!! ATTTTGTGACAATTCAAACT+TGG - chr3.2:32345785-32345804 MS.gene53409:intron 25.0%
!! GATTACAGATGATAATGTTA+TGG - chr3.2:32346807-32346826 MS.gene53409:intron 25.0%
!! TTCAATATCCAAACGATTTT+AGG + chr3.2:32344270-32344289 None:intergenic 25.0%
!! TTGGTAGCTACTATAATAAT+GGG + chr3.2:32347348-32347367 None:intergenic 25.0%
!! TTGTTAGTATTGAGTTTCAA+TGG + chr3.2:32345362-32345381 None:intergenic 25.0%
!! TTTGGTAGCTACTATAATAA+TGG + chr3.2:32347349-32347368 None:intergenic 25.0%
!!! AACATCGTAACAAGTTTTTT+GGG - chr3.2:32343897-32343916 MS.gene53409:CDS 25.0%
!!! ATACAATCTTTGGTGTATTT+TGG + chr3.2:32347367-32347386 None:intergenic 25.0%
!!! TAACATCGTAACAAGTTTTT+TGG - chr3.2:32343896-32343915 MS.gene53409:CDS 25.0%
!!! TTGGTACTTAACAGTTTTAA+AGG + chr3.2:32343459-32343478 None:intergenic 25.0%
AAATGATAATCTGATGCAGA+CGG + chr3.2:32344000-32344019 None:intergenic 30.0%
AACACATATATACCAACACA+TGG + chr3.2:32347535-32347554 None:intergenic 30.0%
AAGATGTAATGAAGCATATG+AGG - chr3.2:32346278-32346297 MS.gene53409:intron 30.0%
AAGGGACAAAAAAGAGAATT+TGG - chr3.2:32344501-32344520 MS.gene53409:CDS 30.0%
AATGAGATCATCATCAAAGT+CGG + chr3.2:32348128-32348147 None:intergenic 30.0%
ACACCAAAGATTGTATTTGA+AGG - chr3.2:32347371-32347390 MS.gene53409:CDS 30.0%
ACACTCATGTTTGAGAAATA+AGG - chr3.2:32345828-32345847 MS.gene53409:intron 30.0%
AGATTGCTATCATAGTTAAC+TGG + chr3.2:32346256-32346275 None:intergenic 30.0%
ATATTTGATCTCTGTAGTTC+TGG - chr3.2:32345631-32345650 MS.gene53409:intron 30.0%
ATCATCTACAAGAACAGTTA+AGG + chr3.2:32345526-32345545 None:intergenic 30.0%
ATGTTTGAGAAATAAGGGAA+GGG - chr3.2:32345834-32345853 MS.gene53409:intron 30.0%
CAAAAAAAAAAAATCCTCCC+AGG + chr3.2:32345322-32345341 None:intergenic 30.0%
CACTCATGTTTGAGAAATAA+GGG - chr3.2:32345829-32345848 MS.gene53409:intron 30.0%
CTGACATGATAGAAAAAATG+AGG + chr3.2:32346089-32346108 None:intergenic 30.0%
CTTCATCAATTGCATTATCA+TGG + chr3.2:32347904-32347923 None:intergenic 30.0%
GAAACAGTATGAAATAGCAA+AGG - chr3.2:32343327-32343346 MS.gene53409:intron 30.0%
GAAATCGAAGATTGTTTGTT+TGG + chr3.2:32345398-32345417 None:intergenic 30.0%
GCTACAAATGATGAATGTTA+TGG - chr3.2:32348012-32348031 MS.gene53409:CDS 30.0%
TAAATTGTGGGATCTTAACA+TGG - chr3.2:32344296-32344315 MS.gene53409:CDS 30.0%
TCAGATAAAATGACAAGATC+TGG + chr3.2:32343091-32343110 None:intergenic 30.0%
TCATTGCAAATGATTCAACA+TGG - chr3.2:32343398-32343417 MS.gene53409:intron 30.0%
TCTTCCAAAACAAAAGAGAA+GGG + chr3.2:32343535-32343554 None:intergenic 30.0%
TCTTGTAGATGATCCAATTA+GGG - chr3.2:32345533-32345552 MS.gene53409:intron 30.0%
TGGAATGAAATAAGGTATGT+AGG - chr3.2:32343641-32343660 MS.gene53409:CDS 30.0%
TGTTAATTATGCAAAAGGGT+TGG - chr3.2:32345728-32345747 MS.gene53409:intron 30.0%
TTCTTGTAGATGATCCAATT+AGG - chr3.2:32345532-32345551 MS.gene53409:intron 30.0%
TTGAACATAGATAAGACAAG+AGG + chr3.2:32344652-32344671 None:intergenic 30.0%
TTGGAATAAGACACAAAAGA+TGG - chr3.2:32342781-32342800 MS.gene53409:CDS 30.0%
TTGTACAAAATAACGTATCG+TGG + chr3.2:32345039-32345058 None:intergenic 30.0%
! ATATATACTTGCGATTAGTC+AGG + chr3.2:32347565-32347584 None:intergenic 30.0%
! TCCATACTATGTATTTTCCT+CGG + chr3.2:32342538-32342557 None:intergenic 30.0%
! TTATCTGAAACACAAACTGA+TGG - chr3.2:32343103-32343122 MS.gene53409:intron 30.0%
! TTCATTTTGCTACTGCATAA+AGG + chr3.2:32343562-32343581 None:intergenic 30.0%
! TTTAAAATCAACAGAGAGCT+AGG + chr3.2:32344113-32344132 None:intergenic 30.0%
!! ATATCCAAACGATTTTAGGT+AGG + chr3.2:32344266-32344285 None:intergenic 30.0%
!! TTTTGTTTCATTCATGACCA+TGG + chr3.2:32344913-32344932 None:intergenic 30.0%
!! TTTTGTTTGTGCATTTTGGT+TGG - chr3.2:32347412-32347431 MS.gene53409:CDS 30.0%
!!! AACAGTTTTAAAGGTCGAAT+AGG + chr3.2:32343450-32343469 None:intergenic 30.0%
!!! ACATCGTAACAAGTTTTTTG+GGG - chr3.2:32343898-32343917 MS.gene53409:CDS 30.0%
!!! CTGGGAGGATTTTTTTTTTT+TGG - chr3.2:32345320-32345339 MS.gene53409:intron 30.0%
!!! GTTTCTTCCATGTTTTAAGA+CGG + chr3.2:32343312-32343331 None:intergenic 30.0%
!!! TTTGTTTGTGCATTTTGGTT+GGG - chr3.2:32347413-32347432 MS.gene53409:CDS 30.0%
AAAATTCTTACGATACCTGC+AGG - chr3.2:32342919-32342938 MS.gene53409:CDS 35.0%
AACAGTTTGCAGTAAGACAT+TGG - chr3.2:32345898-32345917 MS.gene53409:intron 35.0%
AACGAGTTAGGTTTGATTGT+TGG - chr3.2:32347683-32347702 MS.gene53409:CDS 35.0%
AAGAGCGATTGAGAAAAAAG+TGG - chr3.2:32348209-32348228 MS.gene53409:CDS 35.0%
AATGATAATCTGATGCAGAC+GGG + chr3.2:32343999-32344018 None:intergenic 35.0%
AATGCAATTGATGAAGTGCA+GGG - chr3.2:32347908-32347927 MS.gene53409:CDS 35.0%
AATGTTATGGCTGCTGATAT+CGG - chr3.2:32348025-32348044 MS.gene53409:CDS 35.0%
ACACAGACCAATAATCAATC+AGG + chr3.2:32347607-32347626 None:intergenic 35.0%
ACACTGTAAAATGGGGAAAA+TGG - chr3.2:32345480-32345499 MS.gene53409:intron 35.0%
ACCGAGGAAAATACATAGTA+TGG - chr3.2:32342534-32342553 MS.gene53409:CDS 35.0%
ACGCCTTCAAATACAATCTT+TGG + chr3.2:32347377-32347396 None:intergenic 35.0%
ACTGACAATACAACGGAAAA+AGG - chr3.2:32346856-32346875 MS.gene53409:intron 35.0%
ACTGTTAATGTAATGGTTGG+AGG + chr3.2:32345192-32345211 None:intergenic 35.0%
AGAGTAACAACTAGGATTAG+AGG + chr3.2:32344581-32344600 None:intergenic 35.0%
AGATGATCCAATTAGGGTTT+GGG - chr3.2:32345539-32345558 MS.gene53409:intron 35.0%
ATAGAGAACTTCAACGAGTT+AGG - chr3.2:32347671-32347690 MS.gene53409:CDS 35.0%
ATCGAAGATTGTTTGTTTGG+TGG + chr3.2:32345395-32345414 None:intergenic 35.0%
ATGAGATCATCATCAAAGTC+GGG + chr3.2:32348127-32348146 None:intergenic 35.0%
ATGTAATGAAGCATATGAGG+TGG - chr3.2:32346281-32346300 MS.gene53409:intron 35.0%
ATTCAAAGCAGCCATCAAAA+CGG - chr3.2:32347969-32347988 MS.gene53409:CDS 35.0%
ATTCCAAACAAATCCCCTAT+GGG + chr3.2:32342768-32342787 None:intergenic 35.0%
ATTTAATGCTTTCAGTGCAG+CGG + chr3.2:32342654-32342673 None:intergenic 35.0%
CAAGATTAGGTCATTAAGTC+TGG - chr3.2:32347265-32347284 MS.gene53409:intron 35.0%
CATAGTATGGACAAGTGAAA+TGG - chr3.2:32342547-32342566 MS.gene53409:CDS 35.0%
CATGTTTGAGAAATAAGGGA+AGG - chr3.2:32345833-32345852 MS.gene53409:intron 35.0%
CATTTGTAGCATCACATCAT+CGG + chr3.2:32348002-32348021 None:intergenic 35.0%
CCTGATGTTCGAATTCTTAA+AGG - chr3.2:32346694-32346713 MS.gene53409:intron 35.0%
CTCTTCCAAAACAAAAGAGA+AGG + chr3.2:32343536-32343555 None:intergenic 35.0%
GAACAAGAATTAATGCTGGT+AGG + chr3.2:32346067-32346086 None:intergenic 35.0%
GATATCCTGAAAGAACTTCT+GGG - chr3.2:32346496-32346515 MS.gene53409:intron 35.0%
GCTCATTGAATGTCAAGATT+AGG - chr3.2:32347252-32347271 MS.gene53409:intron 35.0%
GGATAATAGAGTCATGAACA+TGG - chr3.2:32344224-32344243 MS.gene53409:CDS 35.0%
GTCATTCCAAACAGAATCAT+TGG + chr3.2:32342813-32342832 None:intergenic 35.0%
GTCTCATGCTGGATTTAAAT+GGG - chr3.2:32343357-32343376 MS.gene53409:intron 35.0%
GTCTCCATCAATCTTCAATT+GGG - chr3.2:32345452-32345471 MS.gene53409:intron 35.0%
GTGACTGTTAATGTAATGGT+TGG + chr3.2:32345195-32345214 None:intergenic 35.0%
TAAAAAATCGGCTGAAGACT+TGG - chr3.2:32342708-32342727 MS.gene53409:CDS 35.0%
TAAGACACAAAAGATGGTTG+TGG - chr3.2:32342787-32342806 MS.gene53409:CDS 35.0%
TAATGCAATTGATGAAGTGC+AGG - chr3.2:32347907-32347926 MS.gene53409:CDS 35.0%
TACACTATTGAGCACTCATT+GGG + chr3.2:32347485-32347504 None:intergenic 35.0%
TACTCGAAAATGTGTGAAAC+CGG - chr3.2:32344717-32344736 MS.gene53409:intron 35.0%
TAGATGATCCAATTAGGGTT+TGG - chr3.2:32345538-32345557 MS.gene53409:intron 35.0%
TATTCCAAACAAATCCCCTA+TGG + chr3.2:32342769-32342788 None:intergenic 35.0%
TCATTGCAGATGATTCTGTA+TGG - chr3.2:32346557-32346576 MS.gene53409:intron 35.0%
TCTGCATTCTCTACAAAGTT+AGG + chr3.2:32347770-32347789 None:intergenic 35.0%
TGAGGAACAAGAATTAATGC+TGG + chr3.2:32346071-32346090 None:intergenic 35.0%
TGATATCCTGAAAGAACTTC+TGG - chr3.2:32346495-32346514 MS.gene53409:intron 35.0%
TGATCCTACCTAAAATCGTT+TGG - chr3.2:32344259-32344278 MS.gene53409:CDS 35.0%
TGTCTCATGCTGGATTTAAA+TGG - chr3.2:32343356-32343375 MS.gene53409:intron 35.0%
TGTCTCCATCAATCTTCAAT+TGG - chr3.2:32345451-32345470 MS.gene53409:intron 35.0%
TGTTTGAGAAATAAGGGAAG+GGG - chr3.2:32345835-32345854 MS.gene53409:intron 35.0%
TGTTTGCAAATAGCTCTTAG+TGG - chr3.2:32346008-32346027 MS.gene53409:intron 35.0%
TTAAAAGCCGGTTAAGAACA+TGG - chr3.2:32347046-32347065 MS.gene53409:intron 35.0%
TTATGTTTCGATGAGAAGAG+AGG - chr3.2:32348166-32348185 MS.gene53409:CDS 35.0%
TTGTCAAATAGTGCCTATCT+TGG - chr3.2:32345063-32345082 MS.gene53409:intron 35.0%
TTTATGTCCCAAACCCTAAT+TGG + chr3.2:32345549-32345568 None:intergenic 35.0%
TTTGGCATGCATATGACAAA+AGG - chr3.2:32342680-32342699 MS.gene53409:CDS 35.0%
! AAAAAGGAAAGAGTGTGACA+TGG - chr3.2:32346872-32346891 MS.gene53409:intron 35.0%
! ATGCCCAAATTTTGCATTCA+TGG + chr3.2:32343263-32343282 None:intergenic 35.0%
! CCTTTAAGAATTCGAACATC+AGG + chr3.2:32346697-32346716 None:intergenic 35.0%
! CCTTTCGAATTTGAAAGTGT+CGG - chr3.2:32346229-32346248 MS.gene53409:intron 35.0%
! CTTGCTGTGTAATGCTAAAA+AGG - chr3.2:32343682-32343701 MS.gene53409:CDS 35.0%
! GTGCTACTATTATTGATGGT+GGG + chr3.2:32345575-32345594 None:intergenic 35.0%
! TGCTGTGCTACTATTATTGA+TGG + chr3.2:32345579-32345598 None:intergenic 35.0%
! TGTGCTACTATTATTGATGG+TGG + chr3.2:32345576-32345595 None:intergenic 35.0%
! TGTTTGGAATGACTACATCA+AGG - chr3.2:32342820-32342839 MS.gene53409:CDS 35.0%
! TTGTTGCAACTGATTCAACA+TGG - chr3.2:32347142-32347161 MS.gene53409:intron 35.0%
! TTTCCCCATTTTACAGTGTT+AGG + chr3.2:32345479-32345498 None:intergenic 35.0%
!! AGTTCCCTTCTCTTTTGTTT+TGG - chr3.2:32343528-32343547 MS.gene53409:intron 35.0%
!! AGTTTTCAATGGACTTTGCT+CGG + chr3.2:32342967-32342986 None:intergenic 35.0%
!! CAAGTTCAAGTTGTCAATTG+CGG + chr3.2:32345143-32345162 None:intergenic 35.0%
!! CATCTGCAATGACCATTTTT+CGG + chr3.2:32346549-32346568 None:intergenic 35.0%
!! GAGAAAGCATTTCCTTCATA+AGG + chr3.2:32347086-32347105 None:intergenic 35.0%
!!! ATCGTAACAAGTTTTTTGGG+GGG - chr3.2:32343900-32343919 MS.gene53409:CDS 35.0%
!!! CATCGTAACAAGTTTTTTGG+GGG - chr3.2:32343899-32343918 MS.gene53409:CDS 35.0%
AAGGAAATTCTGTCTCATGC+TGG - chr3.2:32343346-32343365 MS.gene53409:intron 40.0%
AAGGAACTCATTTCCCATAG+GGG - chr3.2:32342752-32342771 MS.gene53409:CDS 40.0%
ACAGAGTCATTACGATGCAA+AGG + chr3.2:32346196-32346215 None:intergenic 40.0%
ACGAGTCATCAGAAACTATG+AGG - chr3.2:32346717-32346736 MS.gene53409:intron 40.0%
ACGGGATGTCAAATAAAAGG+TGG + chr3.2:32343981-32344000 None:intergenic 40.0%
ACTCGAAAATGTGTGAAACC+GGG - chr3.2:32344718-32344737 MS.gene53409:intron 40.0%
AGAAAAACGTGTGAGAACCA+TGG - chr3.2:32344893-32344912 MS.gene53409:intron 40.0%
AGATAAGACAAGAGGCAAAG+TGG + chr3.2:32344644-32344663 None:intergenic 40.0%
AGATTCTCGTAGATCAAGTG+AGG - chr3.2:32343179-32343198 MS.gene53409:intron 40.0%
AGGACCCAATTGAAGATTGA+TGG + chr3.2:32345459-32345478 None:intergenic 40.0%
AGGTTTGATTGTTGGCAATG+AGG - chr3.2:32347691-32347710 MS.gene53409:CDS 40.0%
AGTGGATAACATCTTGAAGC+CGG - chr3.2:32342619-32342638 MS.gene53409:CDS 40.0%
ATGAACAGTTATGAGACGAG+AGG + chr3.2:32344605-32344624 None:intergenic 40.0%
ATGAAGGAAATGCTTTCTCG+TGG - chr3.2:32347087-32347106 MS.gene53409:intron 40.0%
ATGAGGAAGCTAGTGGAAAT+TGG - chr3.2:32347708-32347727 MS.gene53409:CDS 40.0%
ATGGGATGAGAACCGAAAAA+TGG - chr3.2:32346534-32346553 MS.gene53409:intron 40.0%
CAGACGGGATGTCAAATAAA+AGG + chr3.2:32343984-32344003 None:intergenic 40.0%
CCATGGAACTGACAATACAA+CGG - chr3.2:32346849-32346868 MS.gene53409:intron 40.0%
CCGACACTTTCAAATTCGAA+AGG + chr3.2:32346232-32346251 None:intergenic 40.0%
CCGCCATGAATGCAAAATTT+GGG - chr3.2:32343257-32343276 MS.gene53409:intron 40.0%
CGAATAGGTGAAAACATACC+CGG + chr3.2:32343435-32343454 None:intergenic 40.0%
CGGGATGTCAAATAAAAGGT+GGG + chr3.2:32343980-32343999 None:intergenic 40.0%
CTACACTATTGAGCACTCAT+TGG + chr3.2:32347486-32347505 None:intergenic 40.0%
CTCGTGCAGCAAATTAAACT+TGG - chr3.2:32346337-32346356 MS.gene53409:intron 40.0%
CTGTAACTCTAGTGTTAGCT+AGG + chr3.2:32344555-32344574 None:intergenic 40.0%
CTTGTCAAGCAAGTGATGTT+GGG - chr3.2:32346928-32346947 MS.gene53409:intron 40.0%
GAAGCAGTATGTCCTTATGA+AGG - chr3.2:32347071-32347090 MS.gene53409:intron 40.0%
GAAGGAACTCATTTCCCATA+GGG - chr3.2:32342751-32342770 MS.gene53409:CDS 40.0%
GATAAGACAAGAGGCAAAGT+GGG + chr3.2:32344643-32344662 None:intergenic 40.0%
GATGCAAAGGCTCATTGAAA+TGG + chr3.2:32346183-32346202 None:intergenic 40.0%
GCTCAAGAGACAAATTACCA+TGG - chr3.2:32346832-32346851 MS.gene53409:intron 40.0%
GCTTCTTCCATGTTCTTAAC+CGG + chr3.2:32347056-32347075 None:intergenic 40.0%
GGGGCAAAATTATAGTTGCT+TGG - chr3.2:32345854-32345873 MS.gene53409:intron 40.0%
GGGTCCTAACACTGTAAAAT+GGG - chr3.2:32345472-32345491 MS.gene53409:intron 40.0%
GGTCCTAACACTGTAAAATG+GGG - chr3.2:32345473-32345492 MS.gene53409:intron 40.0%
TAGAGTAGCTATGTAAGCTG+AGG + chr3.2:32346980-32346999 None:intergenic 40.0%
TATGAGGTGGACAAGTGATA+TGG - chr3.2:32346294-32346313 MS.gene53409:intron 40.0%
TCCGCCATGAATGCAAAATT+TGG - chr3.2:32343256-32343275 MS.gene53409:intron 40.0%
TCGTAGATCAAGTGAGGAAA+GGG - chr3.2:32343185-32343204 MS.gene53409:intron 40.0%
TCGTATCAGTGCTAAGATCA+TGG + chr3.2:32344866-32344885 None:intergenic 40.0%
TCTCTACAAAGTTAGGAGCA+AGG + chr3.2:32347763-32347782 None:intergenic 40.0%
TCTTGTCAAGCAAGTGATGT+TGG - chr3.2:32346927-32346946 MS.gene53409:intron 40.0%
TGAAGGAAATGCTTTCTCGT+GGG - chr3.2:32347088-32347107 MS.gene53409:intron 40.0%
TGAAGGAACTCATTTCCCAT+AGG - chr3.2:32342750-32342769 MS.gene53409:CDS 40.0%
TGCGGATCGTGGAAAAAAAA+TGG + chr3.2:32345125-32345144 None:intergenic 40.0%
TGGGTCCTAACACTGTAAAA+TGG - chr3.2:32345471-32345490 MS.gene53409:intron 40.0%
TGTGACATGGACAGATGAAA+TGG - chr3.2:32346885-32346904 MS.gene53409:intron 40.0%
TTCAGAAACATCGAGATGCT+AGG - chr3.2:32347630-32347649 MS.gene53409:CDS 40.0%
TTGTGGCCAATGATTCTGTT+TGG - chr3.2:32342804-32342823 MS.gene53409:CDS 40.0%
TTTGCAGTAAGACATTGGAG+AGG - chr3.2:32345903-32345922 MS.gene53409:intron 40.0%
! AACATGGATTGACTACATCC+GGG - chr3.2:32343414-32343433 MS.gene53409:intron 40.0%
! ACAGCATCGAATATTTGCAC+AGG - chr3.2:32343712-32343731 MS.gene53409:CDS 40.0%
! CAACATGGATTGACTACATC+CGG - chr3.2:32343413-32343432 MS.gene53409:intron 40.0%
! CCCAAATTTTGCATTCATGG+CGG + chr3.2:32343260-32343279 None:intergenic 40.0%
! CTACGAGTCTGGTATACTTT+TGG + chr3.2:32342485-32342504 None:intergenic 40.0%
! TGCTTTGAATGTGATGACGA+AGG + chr3.2:32347959-32347978 None:intergenic 40.0%
! TTTCCCATAGGGGATTTGTT+TGG - chr3.2:32342762-32342781 MS.gene53409:CDS 40.0%
!! CTTAGCACTGATACGATTGA+GGG - chr3.2:32344870-32344889 MS.gene53409:intron 40.0%
!! GAAATCGATGAGAGCATCTT+TGG + chr3.2:32345428-32345447 None:intergenic 40.0%
!! TCTTAGCACTGATACGATTG+AGG - chr3.2:32344869-32344888 MS.gene53409:intron 40.0%
!!! TTTTTTGGGGGGTGTATAGT+TGG - chr3.2:32343911-32343930 MS.gene53409:CDS 40.0%
AAAATCGGCTGAAGACTTGG+AGG - chr3.2:32342711-32342730 MS.gene53409:CDS 45.0%
AAAATGGCGAGTTCTGCGTA+AGG - chr3.2:32345496-32345515 MS.gene53409:intron 45.0%
AAAGAACTTCTGGGCAAGAG+TGG - chr3.2:32346505-32346524 MS.gene53409:intron 45.0%
AAGACTTGGAGGAAGCAGTT+TGG - chr3.2:32342722-32342741 MS.gene53409:CDS 45.0%
AAGGAAATGCTTTCTCGTGG+GGG - chr3.2:32347090-32347109 MS.gene53409:intron 45.0%
AAGGAACAAAACTGCGTGCT+TGG - chr3.2:32348072-32348091 MS.gene53409:CDS 45.0%
AAGTTGTCAATTGCGGATCG+TGG + chr3.2:32345136-32345155 None:intergenic 45.0%
AATTCGAAAGGCTCGTCACA+AGG + chr3.2:32346220-32346239 None:intergenic 45.0%
AGAACTGCTCATAGTTCTCC+AGG + chr3.2:32346147-32346166 None:intergenic 45.0%
AGACATTGGAGAGGAAGTGA+TGG - chr3.2:32345912-32345931 MS.gene53409:intron 45.0%
AGACTTGGAGGAAGCAGTTT+GGG - chr3.2:32342723-32342742 MS.gene53409:CDS 45.0%
AGATTAATGTGTTCCGGCCT+TGG - chr3.2:32344153-32344172 MS.gene53409:CDS 45.0%
AGGGTTCATCTGAGCAAACA+GGG - chr3.2:32347927-32347946 MS.gene53409:CDS 45.0%
AGGTTTCTCACGTGGGAATT+GGG + chr3.2:32344535-32344554 None:intergenic 45.0%
AGTGGAAGATCACGAGATCT+TGG + chr3.2:32344828-32344847 None:intergenic 45.0%
ATCACTGCTCGTGCTAAGAT+GGG - chr3.2:32346781-32346800 MS.gene53409:intron 45.0%
CAAACTAAGACCTGCTGCAT+TGG - chr3.2:32346381-32346400 MS.gene53409:intron 45.0%
CCGTTGTATTGTCAGTTCCA+TGG + chr3.2:32346852-32346871 None:intergenic 45.0%
CTCGGAAAATCTTGGCATCA+GGG + chr3.2:32342949-32342968 None:intergenic 45.0%
CTCGTAGATCAAGTGAGGAA+AGG - chr3.2:32343184-32343203 MS.gene53409:intron 45.0%
CTTGGAGGAAGTGGTTGAAA+AGG - chr3.2:32348090-32348109 MS.gene53409:CDS 45.0%
GAAGGAAATGCTTTCTCGTG+GGG - chr3.2:32347089-32347108 MS.gene53409:intron 45.0%
GACATTGGAGAGGAAGTGAT+GGG - chr3.2:32345913-32345932 MS.gene53409:intron 45.0%
GAGCAGTTCTGCACTATCTT+TGG - chr3.2:32346157-32346176 MS.gene53409:intron 45.0%
GAGGAGCTGTGCATAATCAT+TGG - chr3.2:32346736-32346755 MS.gene53409:intron 45.0%
GATCTCGTGATCTTCCACTA+TGG - chr3.2:32344829-32344848 MS.gene53409:intron 45.0%
GGAAGCTAGTGGAAATTGGT+CGG - chr3.2:32347712-32347731 MS.gene53409:CDS 45.0%
GGACTTTGCTCGGAAAATCT+TGG + chr3.2:32342957-32342976 None:intergenic 45.0%
GGTGGAAAAGGGGAATAAAG+TGG - chr3.2:32342601-32342620 MS.gene53409:CDS 45.0%
GTGGAAGATCACGAGATCTT+GGG + chr3.2:32344827-32344846 None:intergenic 45.0%
GTTAGCTAGGTTTCTCACGT+GGG + chr3.2:32344542-32344561 None:intergenic 45.0%
GTTCCTTTCCGTCAATGCAT+CGG + chr3.2:32348059-32348078 None:intergenic 45.0%
TACATCAGCGTGCTCTTCAA+AGG + chr3.2:32347810-32347829 None:intergenic 45.0%
TAGGTTTCTCACGTGGGAAT+TGG + chr3.2:32344536-32344555 None:intergenic 45.0%
TCCTCTTCATTCGCTGACAT+CGG + chr3.2:32347875-32347894 None:intergenic 45.0%
TCGTGATCTTCCACTATGGA+CGG - chr3.2:32344833-32344852 MS.gene53409:intron 45.0%
TCTTGCCCAGAAGTTCTTTC+AGG + chr3.2:32346504-32346523 None:intergenic 45.0%
TGAGCAGTGTTCTTCAATCG+CGG - chr3.2:32344992-32345011 MS.gene53409:intron 45.0%
TGGTTGTTGAAACGTTTGCG+TGG - chr3.2:32348229-32348248 MS.gene53409:CDS 45.0%
TGTTAGCTAGGTTTCTCACG+TGG + chr3.2:32344543-32344562 None:intergenic 45.0%
TTATGGCTGCTGATATCGGT+CGG - chr3.2:32348029-32348048 MS.gene53409:CDS 45.0%
TTGAGCACTCATTGGGACAA+AGG + chr3.2:32347478-32347497 None:intergenic 45.0%
! ATGCAGCAGGTCTTAGTTTG+TGG + chr3.2:32346381-32346400 None:intergenic 45.0%
! CACATGCATATCTGAAGCCT+GGG - chr3.2:32345302-32345321 MS.gene53409:intron 45.0%
! TCAGCTTGCTCTTCAAAGTG+AGG + chr3.2:32347842-32347861 None:intergenic 45.0%
! TGTGTGAAACCGGGTTGAAA+AGG - chr3.2:32344727-32344746 MS.gene53409:intron 45.0%
!! ATCGATGAGAGCATCTTTGG+TGG + chr3.2:32345425-32345444 None:intergenic 45.0%
!! GAAGCAGTTTGGGGTTTTGA+AGG - chr3.2:32342733-32342752 MS.gene53409:CDS 45.0%
!! AAAAAAAAAAAACAAAAAAA+AGG + chr3.2:32344437-32344456 None:intergenic 5.0%
AAGACAAGAGGCAAAGTGGG+TGG + chr3.2:32344640-32344659 None:intergenic 50.0%
ACCGATGTCAGCGAATGAAG+AGG - chr3.2:32347871-32347890 MS.gene53409:intron 50.0%
ACCTGACTAAGCACCTCAGA+TGG - chr3.2:32343128-32343147 MS.gene53409:intron 50.0%
AGTTTGACCTGTTTCCGACC+CGG + chr3.2:32344764-32344783 None:intergenic 50.0%
ATGCAAGGACTTACCGTGCT+AGG - chr3.2:32346119-32346138 MS.gene53409:intron 50.0%
CAGGGTTCATCTGAGCAAAC+AGG - chr3.2:32347926-32347945 MS.gene53409:CDS 50.0%
CAGTGCTACAACGCCAAGAT+AGG + chr3.2:32345079-32345098 None:intergenic 50.0%
CCATTTCCTCTGTCCATCTG+AGG + chr3.2:32343144-32343163 None:intergenic 50.0%
CCTCAGATGGACAGAGGAAA+TGG - chr3.2:32343141-32343160 MS.gene53409:intron 50.0%
CGAGAGGCAGAGTAACAACT+AGG + chr3.2:32344589-32344608 None:intergenic 50.0%
CGTGATCTTCCACTATGGAC+GGG - chr3.2:32344834-32344853 MS.gene53409:intron 50.0%
CTACCCTTCATTGACAGCCA+AGG + chr3.2:32344173-32344192 None:intergenic 50.0%
CTTGCAGAGCAGGTGGAAAA+GGG - chr3.2:32342590-32342609 MS.gene53409:CDS 50.0%
CTTGGCTGTCAATGAAGGGT+AGG - chr3.2:32344171-32344190 MS.gene53409:CDS 50.0%
GAACAAAACTGCGTGCTTGG+AGG - chr3.2:32348075-32348094 MS.gene53409:CDS 50.0%
GACTTGGAGGAAGCAGTTTG+GGG - chr3.2:32342724-32342743 MS.gene53409:CDS 50.0%
GATCACTGCTCGTGCTAAGA+TGG - chr3.2:32346780-32346799 MS.gene53409:intron 50.0%
GCTCGGAAAATCTTGGCATC+AGG + chr3.2:32342950-32342969 None:intergenic 50.0%
GGACAGAGGAAATGGATCAC+TGG - chr3.2:32343149-32343168 MS.gene53409:intron 50.0%
GGGGTGTATAGTTGGATAGC+TGG - chr3.2:32343919-32343938 MS.gene53409:CDS 50.0%
GGGTTCATCTGAGCAAACAG+GGG - chr3.2:32347928-32347947 MS.gene53409:CDS 50.0%
GGTCGGAAACAGGTCAAACT+GGG - chr3.2:32344764-32344783 MS.gene53409:intron 50.0%
GTCAGACACATCCAGATGCA+AGG - chr3.2:32346104-32346123 MS.gene53409:intron 50.0%
GTGGGATGAAGGACGTAAGA+TGG - chr3.2:32347119-32347138 MS.gene53409:intron 50.0%
GTTGGCAATGAGGAAGCTAG+TGG - chr3.2:32347701-32347720 MS.gene53409:CDS 50.0%
GTTGTAGCACTGTTGTGCAG+TGG - chr3.2:32345087-32345106 MS.gene53409:intron 50.0%
TAAGAATGCGCCTGAGAGAG+AGG + chr3.2:32344699-32344718 None:intergenic 50.0%
TAAGCACCTCAGATGGACAG+AGG - chr3.2:32343135-32343154 MS.gene53409:intron 50.0%
TCAGCGTGCTCTTCAAAGGT+AGG + chr3.2:32347806-32347825 None:intergenic 50.0%
TCATTCGCTGACATCGGTGT+TGG + chr3.2:32347869-32347888 None:intergenic 50.0%
TCGGATAGCCGATGCATTGA+CGG - chr3.2:32348048-32348067 MS.gene53409:CDS 50.0%
TGCAAGGACTTACCGTGCTA+GGG - chr3.2:32346120-32346139 MS.gene53409:intron 50.0%
TTCTCGTGGGGGATTTGAGT+GGG - chr3.2:32347101-32347120 MS.gene53409:intron 50.0%
TTGCAGAGCAGGTGGAAAAG+GGG - chr3.2:32342591-32342610 MS.gene53409:CDS 50.0%
TTTCTCGTGGGGGATTTGAG+TGG - chr3.2:32347100-32347119 MS.gene53409:intron 50.0%
! AGCAGTACTTTTCCTCGTGC+TGG + chr3.2:32344804-32344823 None:intergenic 50.0%
! ATGCATATCTGAAGCCTGGG+AGG - chr3.2:32345305-32345324 MS.gene53409:intron 50.0%
! GAGGAAATGGATCACTGGCT+TGG - chr3.2:32343154-32343173 MS.gene53409:intron 50.0%
! GCACATGCATATCTGAAGCC+TGG - chr3.2:32345301-32345320 MS.gene53409:intron 50.0%
! TAGCCGATGCATTGACGGAA+AGG - chr3.2:32348053-32348072 MS.gene53409:CDS 50.0%
! TCCATCTGAGGTGCTTAGTC+AGG + chr3.2:32343132-32343151 None:intergenic 50.0%
!! TGAAAAGGCGCTACTGGTAC+CGG - chr3.2:32344742-32344761 MS.gene53409:intron 50.0%
AACTGCGTGCTTGGAGGAAG+TGG - chr3.2:32348081-32348100 MS.gene53409:CDS 55.0%
ACAGCAGCTTCCAATGCAGC+AGG + chr3.2:32346394-32346413 None:intergenic 55.0%
AGCTCTACTGCTGTAGACCG+AGG - chr3.2:32342503-32342522 MS.gene53409:CDS 55.0%
AGTTCTCCAGGACCCTAGCA+CGG + chr3.2:32346135-32346154 None:intergenic 55.0%
CAGCAGTAGAGCTACGAGTC+TGG + chr3.2:32342496-32342515 None:intergenic 55.0%
CATCTGAGCAAACAGGGGCA+AGG - chr3.2:32347933-32347952 MS.gene53409:CDS 55.0%
CCTTCATTGACAGCCAAGGC+CGG + chr3.2:32344169-32344188 None:intergenic 55.0%
CGGCCTTGGCTGTCAATGAA+GGG - chr3.2:32344167-32344186 MS.gene53409:CDS 55.0%
GACTGATGTGCTTGCAGAGC+AGG - chr3.2:32342580-32342599 MS.gene53409:CDS 55.0%
GCACGGTAAGTCCTTGCATC+TGG + chr3.2:32346118-32346137 None:intergenic 55.0%
GCTCTGCAAGCACATCAGTC+AGG + chr3.2:32342580-32342599 None:intergenic 55.0%
GCTTGCAGAGCAGGTGGAAA+AGG - chr3.2:32342589-32342608 MS.gene53409:CDS 55.0%
GGGCAAGAGTGGCTTCGAAT+GGG - chr3.2:32346516-32346535 MS.gene53409:intron 55.0%
GGGGGATTTGAGTGGGATGA+AGG - chr3.2:32347108-32347127 MS.gene53409:intron 55.0%
GGGTCGGAAACAGGTCAAAC+TGG - chr3.2:32344763-32344782 MS.gene53409:intron 55.0%
TGATGTGCTTGCAGAGCAGG+TGG - chr3.2:32342583-32342602 MS.gene53409:CDS 55.0%
TGCATTGGAAGCTGCTGTGC+AGG - chr3.2:32346396-32346415 MS.gene53409:intron 55.0%
TGGAATGAGCCCGTCCATAG+TGG + chr3.2:32344846-32344865 None:intergenic 55.0%
TGGGCAAGAGTGGCTTCGAA+TGG - chr3.2:32346515-32346534 MS.gene53409:intron 55.0%
TTCCTCGGTCTGTAGCTCCT+CGG + chr3.2:32342523-32342542 None:intergenic 55.0%
! CCAGTAGCGCCTTTTCAACC+CGG + chr3.2:32344739-32344758 None:intergenic 55.0%
! TCGGTGCGTCTCCGTTTTGA+TGG + chr3.2:32347983-32348002 None:intergenic 55.0%
!! GAAAAGGCGCTACTGGTACC+GGG - chr3.2:32344743-32344762 MS.gene53409:intron 55.0%
!! TGGGACAAAGGTGCCCAGTA+CGG + chr3.2:32347466-32347485 None:intergenic 55.0%
AACTGCAGCCACAGCCGTAC+TGG - chr3.2:32347449-32347468 MS.gene53409:CDS 60.0%
ACCCACTCAGCCTCTCTCTC+AGG - chr3.2:32344686-32344705 MS.gene53409:intron 60.0%
ACTGCAGCCACAGCCGTACT+GGG - chr3.2:32347450-32347469 MS.gene53409:CDS 60.0%
AGATGCGCGAAACCAGCACG+AGG - chr3.2:32344789-32344808 MS.gene53409:intron 60.0%
AGTGCAGCGGCAAATGCTGC+CGG + chr3.2:32342641-32342660 None:intergenic 60.0%
CAACACATGGTGCACCGTGC+AGG + chr3.2:32347522-32347541 None:intergenic 60.0%
CCGGCCTTGGCTGTCAATGA+AGG - chr3.2:32344166-32344185 MS.gene53409:CDS 60.0%
CTGCACGGTGCACCATGTGT+TGG - chr3.2:32347520-32347539 MS.gene53409:CDS 60.0%
GACTTACCGTGCTAGGGTCC+TGG - chr3.2:32346126-32346145 MS.gene53409:intron 60.0%
GCCTGAGAGAGAGGCTGAGT+GGG + chr3.2:32344690-32344709 None:intergenic 60.0%
TGAGAGAGAGGCTGAGTGGG+TGG + chr3.2:32344687-32344706 None:intergenic 60.0%
! ACTGGTACCGGGTCGGAAAC+AGG - chr3.2:32344754-32344773 MS.gene53409:intron 60.0%
!! AAAGGTGCCCAGTACGGCTG+TGG + chr3.2:32347460-32347479 None:intergenic 60.0%
!! CCGGGTTGAAAAGGCGCTAC+TGG - chr3.2:32344736-32344755 MS.gene53409:intron 60.0%
CGCCTGAGAGAGAGGCTGAG+TGG + chr3.2:32344691-32344710 None:intergenic 65.0%
GACACTCGCACGCTCCTGCA+CGG - chr3.2:32347505-32347524 MS.gene53409:CDS 65.0%
GACCGAGGAGCTACAGACCG+AGG - chr3.2:32342518-32342537 MS.gene53409:CDS 65.0%
! AGGCGCTACTGGTACCGGGT+CGG - chr3.2:32344747-32344766 MS.gene53409:intron 65.0%
! TGGCATCAGGGTGCTCCTGC+AGG + chr3.2:32342937-32342956 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 32342476 32348255 32342476 ID=MS.gene53409
chr3.2 mRNA 32342476 32348255 32342476 ID=MS.gene53409.t1;Parent=MS.gene53409
chr3.2 exon 32347890 32348255 32347890 ID=MS.gene53409.t1.exon1;Parent=MS.gene53409.t1
chr3.2 CDS 32347890 32348255 32347890 ID=cds.MS.gene53409.t1;Parent=MS.gene53409.t1
chr3.2 exon 32347296 32347790 32347296 ID=MS.gene53409.t1.exon2;Parent=MS.gene53409.t1
chr3.2 CDS 32347296 32347790 32347296 ID=cds.MS.gene53409.t1;Parent=MS.gene53409.t1
chr3.2 exon 32344137 32344622 32344137 ID=MS.gene53409.t1.exon3;Parent=MS.gene53409.t1
chr3.2 CDS 32344137 32344622 32344137 ID=cds.MS.gene53409.t1;Parent=MS.gene53409.t1
chr3.2 exon 32343552 32344043 32343552 ID=MS.gene53409.t1.exon4;Parent=MS.gene53409.t1
chr3.2 CDS 32343552 32344043 32343552 ID=cds.MS.gene53409.t1;Parent=MS.gene53409.t1
chr3.2 exon 32342476 32343096 32342476 ID=MS.gene53409.t1.exon5;Parent=MS.gene53409.t1
chr3.2 CDS 32342476 32343096 32342476 ID=cds.MS.gene53409.t1;Parent=MS.gene53409.t1
Gene Sequence

>MS.gene53409

ATGCATCCAAAAGTATACCAGACTCGTAGCTCTACTGCTGTAGACCGAGGAGCTACAGACCGAGGAAAATACATAGTATGGACAAGTGAAATGGACAATTGCCTGACTGATGTGCTTGCAGAGCAGGTGGAAAAGGGGAATAAAGTGGATAACATCTTGAAGCCGGCAGCATTTGCCGCTGCACTGAAAGCATTAAATGAAAAGTTTGGCATGCATATGACAAAAGGACACATAAAAAATCGGCTGAAGACTTGGAGGAAGCAGTTTGGGGTTTTGAAGGAACTCATTTCCCATAGGGGATTTGTTTGGAATAAGACACAAAAGATGGTTGTGGCCAATGATTCTGTTTGGAATGACTACATCAAGGTAATATTGTTAGCTGCAATACAATATTCACCCCATTAATTTATAGTTTTCTGTTTGTTGTCTGATAAGTAATAAGTAAAATTCTTACGATACCTGCAGGAGCACCCTGATGCCAAGATTTTCCGAGCAAAGTCCATTGAAAACTATGATAAATTATGTATTATTCTTGAAAGTGATCAATCAATTGCAAGATTTTCTGACAATGTTACTGAAATTGATGTAAACTTCACAGTTGATGACGAAGAGCCAGATCTTGTCATTTTATCTGAAACACAAACTGATGGAAACCTGACTAAGCACCTCAGATGGACAGAGGAAATGGATCACTGGCTTGGAAAGATTCTCGTAGATCAAGTGAGGAAAGGGCTTAAAATAGATAATGTCTTTCAGACAGAAGCATATGACAAAGCTGTTTCCGCCATGAATGCAAAATTTGGGCATCATCTAACAAAATTTCACATTAAAAATCGTCTTAAAACATGGAAGAAACAGTATGAAATAGCAAAGGAAATTCTGTCTCATGCTGGATTTAAATGGGACGAAACAAAGAAAATGATCATTGCAAATGATTCAACATGGATTGACTACATCCGGGTATGTTTTCACCTATTCGACCTTTAAAACTGTTAAGTACCAATGTTTTACAAAATATTTATCTTCTGACGCAAACAAAAAGTCATTTACATAGTTCCCTTCTCTTTTGTTTTGGAAGAGAAACCTTTATGCAGTAGCAAAATGAATTTTTCTTTATATTCTTTGCAAAAGTCATAATCCATTGTTCTCATTAATGAAATTAATTTGGAATGAAATAAGGTATGTAGGACAAATGTTTTGAATTCACTTGCTGTGTAATGCTAAAAAGGCATCTTTACAGCATCGAATATTTGCACAGGCATCTGTTATCTTTTTTCTATTACTGTTAAGGCAATTGAGTTATGATATTTTCAAAACCAATGCTATTTAGATGAAGTTATACAGTAAAATTGGTCTCTTTGTCAATGCTTCACATGTTTTTTATTTAATGTATAACATCCTCTAGTTTTTATTTAATATATAACATCGTAACAAGTTTTTTGGGGGGTGTATAGTTGGATAGCTGGTTGTTTTCGTATTGCTTTAATTTTGTAATTAGTATCCCACCTTTTATTTGACATCCCGTCTGCATCAGATTATCATTTGTTACAACCTTTTAATATTGCCCAAAGAAAATTATATGTAGCAAATAGTCAAACTGAACTGTAGTAGCAAATGTCAATAATTTACAGCTACCTAGCTCTCTGTTGATTTTAAATTATTAGGCCTTCAAATTCAAGATTAATGTGTTCCGGCCTTGGCTGTCAATGAAGGGTAGGTATAAACATTTAAATTAGAAAGTTTTTGTTGGATAATAGAGTCATGAACATGGTTGTCAAACTCGTGATCCTACCTAAAATCGTTTGGATATTGAAAAATTGTAAATTGTGGGATCTTAACATGGATCGTAAGATCCCACCAAAATGACAATTATATTTAATTACTTTTTATATCATAAATTTTTTGTGAATTATTTATTATCTAACATTAATTTATTCTATTTGTTATTAGTATTAGAACCTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGTTATTAAGATGATAAAAACTGGACTTAACAATAAAAAGGGACAAAAAAGAGAATTTGGCTCAATGACCCAATTCCCACGTGAGAAACCTAGCTAACACTAGAGTTACAGTCTCCTCTAATCCTAGTTGTTACTCTGCCTCTCGTCTCATAACTGTTCATCTTCTCGACAAGCCACCCACTTTGCCTCTTGTCTTATCTATGTTCAATTTCTCTATAAGCCACCCACTCAGCCTCTCTCTCAGGCGCATTCTTACTCGAAAATGTGTGAAACCGGGTTGAAAAGGCGCTACTGGTACCGGGTCGGAAACAGGTCAAACTGGGCAAGATGCGCGAAACCAGCACGAGGAAAAGTACTGCTCCCAAGATCTCGTGATCTTCCACTATGGACGGGCTCATTCCATGATCTTAGCACTGATACGATTGAGGGAGAAAAACGTGTGAGAACCATGGTCATGAATGAAACAAAATGTTCAAAGAATTATTAAGGAAACATAGCAAATAACTTATTTTTGGTTAACATGTAACTTGAGCAGTGTTCTTCAATCGCGGCGTTAACAAGTTGCTATTGTTCCACGATACGTTATTTTGTACAAAATGTTGTCAAATAGTGCCTATCTTGGCGTTGTAGCACTGTTGTGCAGTGGAACATGAACAAACCATTTTTTTTCCACGATCCGCAATTGACAACTTGAACTTGAGTCATAGTAATTTATACACGTTATTCCTCCAACCATTACATTAACAGTCACATATACACTAAATATTAACGGGAAAAATAAAAAATTTCTCAGGACTTGCAAATACTTTATTACTAAAATCTTCAAGCATACATGAAGCACATGCATATCTGAAGCCTGGGAGGATTTTTTTTTTTTGGTGAATAAGGCATGATTCCATTGAAACTCAATACTAACAATCTTCAAACACCACCAAACAAACAATCTTCGATTTCAGCACCACCAAAGATGCTCTCATCGATTTCGATTGTCTCCATCAATCTTCAATTGGGTCCTAACACTGTAAAATGGGGAAAATGGCGAGTTCTGCGTAAGGTTGACCTTAACTGTTCTTGTAGATGATCCAATTAGGGTTTGGGACATAAATCTCCCACCATCAATAATAGTAGCACAGCATTCAGAGTTCATTTTGTGTGTGTTCAAGTGTCATATTTGATCTCTGTAGTTCTGGTTCATTTTTTATTTAATTTTGATTAATTTTTTTATTCAGATAATCAACTTATCAATTCGTTTATTCTGAAAGACTGTTAATTATGCAAAAGGGTTGGATCACACTAATTGACAATTCAAAATTGGTTGTAGATTTTGTGACAATTCAAACTTGGTTGTAGATTTTGCATATTAGACACTCATGTTTGAGAAATAAGGGAAGGGGCAAAATTATAGTTGCTTGGAGAAGTTATTGTAATAGAATGAACAGTTTGCAGTAAGACATTGGAGAGGAAGTGATGGGTAGAGAAAAAATTCTTGTTTCGCCGTAATTTAAAGCCGTATTTTACTATTTCTGTATTTTTCATTGGTTTACTGTTTGCAAATAGCTCTTAGTGGCACTCTTGTATTTGTCTTACTAAAATGTCAGTTCCTACCAGCATTAATTCTTGTTCCTCATTTTTTCTATCATGTCAGACACATCCAGATGCAAGGACTTACCGTGCTAGGGTCCTGGAGAACTATGAGCAGTTCTGCACTATCTTTGGCCATTTCAATGAGCCTTTGCATCGTAATGACTCTGTGCCTTGTGACGAGCCTTTCGAATTTGAAAGTGTCGGTCCAGTTAACTATGATAGCAATCTTAAAGATGTAATGAAGCATATGAGGTGGACAAGTGATATGGACAGCTGTTTAAGTGAGATTCTCGTGCAGCAAATTAAACTTGGTAACAGAAGTAGATTTGACCACAAACTAAGACCTGCTGCATTGGAAGCTGCTGTGCAGGCTATTAATGAAAAGTTTAAGCTTTATATGTCAAAAGATCATATTAAAAACCGTCTTAAAACATGGAAGAAACAATATGATATCCTGAAAGAACTTCTGGGCAAGAGTGGCTTCGAATGGGATGAGAACCGAAAAATGGTCATTGCAGATGATTCTGTATGGAATGAATATATTAAGGTGCATGTTATAGACTACTTTAAATTTCTATTCGGCATTTGTTGTAGCATAACACAATATTACTGTTAAGCTTATTACATTTTTCTGGAGCAGATAAATCCTGATGTTCGAATTCTTAAAGGACGAGTCATCAGAAACTATGAGGAGCTGTGCATAATCATTGGTCACATTGATCCACCAGGTATGATCACTGCTCGTGCTAAGATGGGTATGATTACAGATGATAATGTTATGGAAGCTCAAGAGACAAATTACCATGGAACTGACAATACAACGGAAAAAGGAAAGAGTGTGACATGGACAGATGAAATGGATCTTTGCTTGACAGAGCTTCTTGTCAAGCAAGTGATGTTGGGAAATAAGCTTGAGAAAAATTTTAAGACCTCAGCTTACATAGCTACTCTAGCAGTTCTAAATGAGAGATTTGACCTGAATTTAACAATAGAAAACATTAAAAGCCGGTTAAGAACATGGAAGAAGCAGTATGTCCTTATGAAGGAAATGCTTTCTCGTGGGGGATTTGAGTGGGATGAAGGACGTAAGATGGTTGTTGCAACTGATTCAACATGGAATGAATATATTAAGGTATAGTTATTCATTTTAGTTTCAGAAGTAATTATGGTTACATTTATTTGCTATTGTAGTACTTTAACTAGTGCTCATTGAATGTCAAGATTAGGTCATTAAGTCTGGTGATCTTGTCATAATTTTTAACCATTTGTTATCTTCTCTATGTAATTTAATCAAAGACCCATTATTATAGTAGCTACCAAAATACACCAAAGATTGTATTTGAAGGCGTCATCTTTCACTTATTTTTTGTTTGTGCATTTTGGTTGGGTTCAGTTGCTTCAAACTGCAGCCACAGCCGTACTGGGCACCTTTGTCCCAATGAGTGCTCAATAGTGTAGACACTCGCACGCTCCTGCACGGTGCACCATGTGTTGGTATATATGTGTTTTATATTCCTGACTAATCGCAAGTATATATGTATGTGTTCCTAGATAATCCTGATTGATTATTGGTCTGTGTATATTCAGAAACATCGAGATGCTAGGAGTCTGCGAGACAAACGAATAGAGAACTTCAACGAGTTAGGTTTGATTGTTGGCAATGAGGAAGCTAGTGGAAATTGGTCGGAAGACACTGAGATGTTTGATGTAAACCTTGCTCCTAACTTTGTAGAGAATGCAGATGTAAATCTTACTCCTACCTTTGAAGAGCACGCTGATGTAAATATCATTCCTCACTTTGAAGAGCAAGCTGAATCTCCAACACCGATGTCAGCGAATGAAGAGGAGATGAGCCATGATAATGCAATTGATGAAGTGCAGGGTTCATCTGAGCAAACAGGGGCAAGGCCTTCGTCATCACATTCAAAGCAGCCATCAAAACGGAGACGCACCGATGATGTGATGCTACAAATGATGAATGTTATGGCTGCTGATATCGGTCGGATAGCCGATGCATTGACGGAAAGGAACAAAACTGCGTGCTTGGAGGAAGTGGTTGAAAAGGTGCAGAATATTCCCGACTTTGATGATGATCTCATTATTGAAGCTTGTGAATATTTATGTTTCGATGAGAAGAGAGGATTGATGTTTTTGAATTTAAAAGAGCGATTGAGAAAAAAGTGGTTGTTGAAACGTTTGCGTGGTTAA

Protein sequence

>MS.gene53409.t1

MHPKVYQTRSSTAVDRGATDRGKYIVWTSEMDNCLTDVLAEQVEKGNKVDNILKPAAFAAALKALNEKFGMHMTKGHIKNRLKTWRKQFGVLKELISHRGFVWNKTQKMVVANDSVWNDYIKEHPDAKIFRAKSIENYDKLCIILESDQSIARFSDNVTEIDVNFTVDDEEPDLVILSETQTDGNLTKHLRWTEEMDHWLGKILVDQVRKGLKIDNVFQTEAYDKAVSAMNAKFGHHLTKFHIKNRLKTWKKQYEIAKEILSHAGFKWDETKKMIIANDSTWIDYIRTHPDARTYRARVLENYEQFCTIFGHFNEPLHRNDSVPCDEPFEFESVGPVNYDSNLKDVMKHMRWTSDMDSCLSEILVQQIKLGNRSRFDHKLRPAALEAAVQAINEKFKLYMSKDHIKNRLKTWKKQYDILKELLGKSGFEWDENRKMVIADDSVWNEYIKINPDVRILKGRVIRNYEELCIIIGHIDPPGMITARAKMGMITDDNVMEAQETNYHGTDNTTEKGKSVTWTDEMDLCLTELLVKQVMLGNKLEKNFKTSAYIATLAVLNERFDLNLTIENIKSRLRTWKKQYVLMKEMLSRGGFEWDEGRKMVVATDSTWNEYIKKHRDARSLRDKRIENFNELGLIVGNEEASGNWSEDTEMFDVNLAPNFVENADVNLTPTFEEHADVNIIPHFEEQAESPTPMSANEEEMSHDNAIDEVQGSSEQTGARPSSSHSKQPSKRRRTDDVMLQMMNVMAADIGRIADALTERNKTACLEEVVEKVQNIPDFDDDLIIEACEYLCFDEKRGLMFLNLKERLRKKWLLKRLRG