AlfalfaGEDB | MS.gene71718

M. sativa cultivar XinJiangDaYe / MS.gene71718

KEGG: K17815
GO: GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0008297 GO:0008409 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0035312 GO:0045145 GO:0140097
PFAM: PF09810.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71718.t1	AES60682.1	86	236	14	1	1	236	139	355	1.10E-112	416.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71718.t1	Q9FKK6	49.6	234	114	2	1	232	148	379	4.0e-60	233.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71718.t1	G7IA65	86.0	236	14	1	1	236	139	355	7.6e-113	416.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene71718	0.835737	1.41E-56	-1.69E-46
MS.gene049159	MS.gene71718	0.807554	4.78E-50	-1.69E-46
MS.gene049254	MS.gene71718	0.810785	9.70E-51	-1.69E-46
MS.gene049343	MS.gene71718	0.829632	4.62E-55	-1.69E-46
MS.gene049672	MS.gene71718	0.811964	5.38E-51	-1.69E-46
MS.gene049711	MS.gene71718	0.829804	4.19E-55	-1.69E-46
MS.gene049850	MS.gene71718	0.842592	2.35E-58	-1.69E-46
MS.gene050156	MS.gene71718	0.809477	1.86E-50	-1.69E-46
MS.gene051181	MS.gene71718	0.806724	7.16E-50	-1.69E-46
MS.gene051719	MS.gene71718	0.81703	4.07E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71718.t1	MTR_1g062090	86.017	236	14	1	1	236	139	355	9.05e-148	419
MS.gene71718.t1	MTR_4g060790	63.900	241	85	1	1	241	145	383	4.12e-109	322

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71718.t1	AT5G60370	48.739	238	118	2	1	236	148	383	9.37e-68	216
MS.gene71718.t1	AT5G60370	52.830	159	71	2	1	157	148	304	6.14e-42	147

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Find 49 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGTTAATTTCATCAA+TGG	0.388045	1.1:+77502637	MS.gene71718:CDS
AAGAGTAAAGCGATGAAAGC+TGG	0.536293	1.1:+77502529	None:intergenic
AATGTGTTACAAGTATTTGT+GGG	0.525943	1.1:+77502870	MS.gene71718:CDS
AATTTGTGTATGATGGTAGG+TGG	0.653126	1.1:+77503133	MS.gene71718:CDS
ACAAGAGGTTCTGGAACCAG+TGG	0.648454	1.1:+77502576	MS.gene71718:CDS
ACACTAGCTTATCATTAGCA+CGG	0.607468	1.1:-77503065	None:intergenic
ACCAATGTAAGCAGGGCACT+GGG	0.567241	1.1:-77503261	None:intergenic
ACTAGCTTATCATTAGCACG+GGG	0.797096	1.1:-77503063	None:intergenic
AGAAGCCAGTTATGTTGATG+AGG	0.540672	1.1:+77503203	MS.gene71718:CDS
AGCATTGACACTTGCTGATG+TGG	0.498297	1.1:+77503008	MS.gene71718:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGAATCACAAAAAAGAAAC+GGG	+	chr1.1:77502836-77502855	MS.gene71718:CDS	30.0%
GCAGAATCACAAAAAAGAAA+CGG	+	chr1.1:77502835-77502854	MS.gene71718:CDS	30.0%
GGTGGATAAAGAATGAAATT+AGG	+	chr1.1:77503151-77503170	MS.gene71718:CDS	30.0%
GTGTTCAATAAGTTCTGTTA+TGG	+	chr1.1:77503339-77503358	MS.gene71718:CDS	30.0%
TCTTTACATAAATTACGTCG+AGG	-	chr1.1:77502955-77502974	None:intergenic	30.0%
TGGGGAAAATTGATGAAATT+CGG	+	chr1.1:77502740-77502759	MS.gene71718:CDS	30.0%
AATCACAAAAAAGAAACGGG+AGG	+	chr1.1:77502839-77502858	MS.gene71718:CDS	35.0%
AATTTGTGTATGATGGTAGG+TGG	+	chr1.1:77503133-77503152	MS.gene71718:CDS	35.0%
ATCTTCCTCATCAACATAAC+TGG	-	chr1.1:77503211-77503230	None:intergenic	35.0%
GAAGTCATCTGAAGACTATA+TGG	+	chr1.1:77502609-77502628	MS.gene71718:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	77502541	77503380	77502541	ID=MS.gene71718
chr1.1	mRNA	77502541	77503380	77502541	ID=MS.gene71718.t1;Parent=MS.gene71718
chr1.1	exon	77502541	77503380	77502541	ID=MS.gene71718.t1.exon1;Parent=MS.gene71718.t1
chr1.1	CDS	77502541	77503380	77502541	ID=cds.MS.gene71718.t1;Parent=MS.gene71718.t1

Gene Sequence

>MS.gene71718

ATGAAAGCTGGTATAGATCGGCATTTTCAGCTTGAACAAGAGGTTCTGGAACCAGTGGAAGTGAATGTGAAGTCATCTGAAGACTATATGGCATTGAAACTTGTTAATTTCATCAATGGTGTGAATCAACTGTTGTTTGAAGGACTAACTCGCGAGCTTCCTATAATAAGCTTTGATTTTGCACAAGGTATTTGGATGGTGGGGAAAATTGATGAAATTCGGATGCCTAAGGCAAAAAAAGATCATAATCCGATGCTAGTTGAAACTAAGACTCGTTACCGAGATACAGTTCCTGCAGAATCACAAAAAAGAAACGGGAGGATTCAACTAATGTGTTACAAGTATTTGTGGGACAATTTAGTTGTTCGTGACTTCCCTTCTGAAAGATTGTTTGAATATTTCGAGTTAAATCCTCGACGTAATTTATGTAAAGATCTACGAACAGCGTGTGTTGATTCTGGAATCTCAGCATTGACACTTGCTGATGTGGTGGTTTGTTACCAAAATATGTGTAAGATGCTGCCCCGTGCTAATGATAAGCTAGTGTTGAGATACGAATCTCAGAGGGATCACTCACTGTTGGAAGAAGAAAAATTTGTGTATGATGGTAGGTGGATAAAGAATGAAATTAGGAATTGTCTTGAGTTTTGGCTTGGAAAGAGAGAAGCCAGTTATGTTGATGAGGAAGATCAATGGAATGTGGATTTTGTGATTTTACTTCCCAGTGCCCTGCTTACATTGGTGATTCTGAGAGCACAGAAACCCTTTCAGAGTATGATGACTCAAGTGACTGTTGAAGTGTTCAATAAGTTCTGTTATGGTTTCTGCTGGAATGGTTAG

Protein sequence

>MS.gene71718.t1

MKAGIDRHFQLEQEVLEPVEVNVKSSEDYMALKLVNFINGVNQLLFEGLTRELPIISFDFAQGIWMVGKIDEIRMPKAKKDHNPMLVETKTRYRDTVPAESQKRNGRIQLMCYKYLWDNLVVRDFPSERLFEYFELNPRRNLCKDLRTACVDSGISALTLADVVVCYQNMCKMLPRANDKLVLRYESQRDHSLLEEEKFVYDGRWIKNEIRNCLEFWLGKREASYVDEEDQWNVDFVILLPSALLTLVILRAQKPFQSMMTQVTVEVFNKFCYGFCWNG