Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32899.t1 | KEH35789.1 | 97.3 | 37 | 1 | 0 | 56 | 92 | 56 | 92 | 1.10E-09 | 72.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32899.t1 | G7ZXK9 | 97.3 | 37 | 1 | 0 | 56 | 92 | 56 | 92 | 8.3e-10 | 72.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene32899 | 0.822262 | 2.60E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene32899 | 0.80273 | 4.88E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene32899 | 0.810167 | 1.32E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene32899 | 0.80102 | 1.10E-48 | -1.69E-46 |
| MS.gene050355 | MS.gene32899 | 0.813296 | 2.75E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene32899 | 0.850049 | 2.18E-60 | -1.69E-46 |
| MS.gene050719 | MS.gene32899 | 0.852329 | 4.96E-61 | -1.69E-46 |
| MS.gene050721 | MS.gene32899 | 0.855157 | 7.62E-62 | -1.69E-46 |
| MS.gene050724 | MS.gene32899 | 0.850357 | 1.79E-60 | -1.69E-46 |
| MS.gene050750 | MS.gene32899 | 0.820979 | 5.15E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene32899 | 0.812593 | 3.92E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene32899 | 0.84296 | 1.88E-58 | -1.69E-46 |
| MS.gene050953 | MS.gene32899 | 0.821084 | 4.87E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene32899 | 0.805477 | 1.31E-49 | -1.69E-46 |
| MS.gene051265 | MS.gene32899 | 0.822203 | 2.69E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene32899 | 0.807472 | 4.97E-50 | -1.69E-46 |
| MS.gene052208 | MS.gene32899 | 0.809785 | 1.59E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene32899 | 0.818279 | 2.13E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene32899 | 0.808241 | 3.41E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene32899 | 0.81047 | 1.13E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene32899 | 0.805479 | 1.31E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene32899 | 0.805223 | 1.48E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene32899 | 0.806394 | 8.40E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene32899 | 0.831424 | 1.68E-55 | -1.69E-46 |
| MS.gene05415 | MS.gene32899 | 0.823751 | 1.17E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene32899 | 0.814211 | 1.73E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene32899 | 0.81369 | 2.25E-51 | -1.69E-46 |
| MS.gene054433 | MS.gene32899 | 0.823726 | 1.19E-53 | -1.69E-46 |
| MS.gene054472 | MS.gene32899 | 0.812463 | 4.19E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene32899 | 0.816614 | 5.05E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene32899 | 0.802521 | 5.39E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene32899 | 0.810336 | 1.21E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene32899 | 0.815131 | 1.08E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene32899 | 0.811444 | 6.98E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene32899 | 0.804213 | 2.41E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene32899 | 0.805412 | 1.35E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene32899 | 0.832237 | 1.06E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene32899 | 0.839028 | 2.02E-57 | -1.69E-46 |
| MS.gene05604 | MS.gene32899 | 0.810208 | 1.29E-50 | -1.69E-46 |
| MS.gene056373 | MS.gene32899 | 0.807172 | 5.76E-50 | -1.69E-46 |
| MS.gene056498 | MS.gene32899 | 0.818033 | 2.42E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene32899 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene057026 | MS.gene32899 | 0.818902 | 1.54E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene32899 | 0.837607 | 4.71E-57 | -1.69E-46 |
| MS.gene057200 | MS.gene32899 | 0.802138 | 6.47E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene32899 | 0.80237 | 5.79E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene32899 | 0.812924 | 3.32E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene32899 | 0.818273 | 2.14E-52 | -1.69E-46 |
| MS.gene057736 | MS.gene32899 | 0.802161 | 6.40E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene32899 | 0.833517 | 5.10E-56 | -1.69E-46 |
| MS.gene058625 | MS.gene32899 | 0.810839 | 9.44E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene32899 | 0.815963 | 7.06E-52 | -1.69E-46 |
| MS.gene059249 | MS.gene32899 | 0.800589 | 1.34E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene32899 | 0.812233 | 4.70E-51 | -1.69E-46 |
| MS.gene05979 | MS.gene32899 | 0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene060312 | MS.gene32899 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene32899 | 0.870095 | 1.89E-66 | -1.69E-46 |
| MS.gene060429 | MS.gene32899 | 0.803239 | 3.83E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene32899 | 0.803599 | 3.23E-49 | -1.69E-46 |
| MS.gene060553 | MS.gene32899 | 0.80483 | 1.79E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene32899 | 0.8273 | 1.69E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene32899 | 0.818763 | 1.65E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene32899 | 0.807208 | 5.66E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene32899 | -0.825218 | 5.29E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32899.t1 | MTR_3g102780 | 96.774 | 93 | 3 | 0 | 1 | 93 | 1 | 93 | 2.11e-59 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGGACTTGGTTGGGGTTT+TGG | 0.178577 | 3.3:+84893468 | MS.gene32899:CDS |
| CGTTGGAGTGGGACTTGGTT+GGG | 0.226520 | 3.3:+84893461 | MS.gene32899:CDS |
| TTCGGTGTTGGTTGCGGTTT+CGG | 0.256247 | 3.3:+84891624 | MS.gene32899:CDS |
| TTCGGTGTTGGATGGGGTTT+CGG | 0.286806 | 3.3:+84891642 | MS.gene32899:CDS |
| CCAAGACCCAAGAAGTTTAA+TGG | 0.287935 | 3.3:-84892496 | None:intergenic |
| CCATTAAACTTCTTGGGTCT+TGG | 0.313376 | 3.3:+84892496 | MS.gene32899:CDS |
| AACGGTGCCGGCATCGGATT+TGG | 0.326196 | 3.3:+84891501 | MS.gene32899:CDS |
| GCTCATGGCCGACCAGTAAT+AGG | 0.342330 | 3.3:-84893684 | None:intergenic |
| AGGTATGCCATTAAACTTCT+TGG | 0.370466 | 3.3:+84892489 | MS.gene32899:intron |
| AGGAGTGGAATTTGATAGTA+AGG | 0.379797 | 3.3:+84893536 | MS.gene32899:CDS |
| GTTGCGGTTTCGGTGTTGGA+TGG | 0.386697 | 3.3:+84891634 | MS.gene32899:CDS |
| TTGCGGTTTCGGTGTTGGAT+GGG | 0.396660 | 3.3:+84891635 | MS.gene32899:CDS |
| TGTGGCGTTGGAGTGGGACT+TGG | 0.400944 | 3.3:+84893456 | MS.gene32899:CDS |
| GTTGGAGTGGGACTTGGTTG+GGG | 0.418393 | 3.3:+84893462 | MS.gene32899:CDS |
| TTGGTACTGCTTATGGTAGC+AGG | 0.426214 | 3.3:+84893487 | MS.gene32899:CDS |
| AGATTGCTACCACCTATTAC+TGG | 0.428885 | 3.3:+84893672 | MS.gene32899:intron |
| AACTTCTTGGGTCTTGGTGC+AGG | 0.431270 | 3.3:+84892502 | MS.gene32899:CDS |
| GGAGGCTGTGGCGTTGGAGT+GGG | 0.439466 | 3.3:+84893450 | MS.gene32899:CDS |
| ATTACTGGTCGGCCATGAGC+AGG | 0.440227 | 3.3:+84893687 | MS.gene32899:CDS |
| GGTATGCCATTAAACTTCTT+GGG | 0.447104 | 3.3:+84892490 | MS.gene32899:intron |
| TGGAGGCTGTGGCGTTGGAG+TGG | 0.449916 | 3.3:+84893449 | MS.gene32899:CDS |
| TAAGGAGAAAAGTGATAGCA+TGG | 0.453419 | 3.3:+84893554 | MS.gene32899:CDS |
| GCGTTGGAGTGGGACTTGGT+TGG | 0.454156 | 3.3:+84893460 | MS.gene32899:CDS |
| GCAGGTTTCGGTGTTGGTTG+CGG | 0.456771 | 3.3:+84891618 | MS.gene32899:intron |
| GTTGGTTGCGGTTTCGGTGT+TGG | 0.457746 | 3.3:+84891630 | MS.gene32899:CDS |
| TGCGGTTTCGGTGTTGGATG+GGG | 0.461719 | 3.3:+84891636 | MS.gene32899:CDS |
| TGAATTTCTTACTTCTGGAC+TGG | 0.462985 | 3.3:-84893589 | None:intergenic |
| GTTGCATGGCCCTATGCCTA+TGG | 0.471187 | 3.3:+84893710 | MS.gene32899:CDS |
| TTGTCAAGGATCACATTTCA+AGG | 0.480370 | 3.3:+84893516 | MS.gene32899:CDS |
| CTGCTTATGGTAGCAGGTAT+CGG | 0.496946 | 3.3:+84893493 | MS.gene32899:CDS |
| AACTTCAACGGTGCCGGCAT+CGG | 0.506242 | 3.3:+84891495 | MS.gene32899:CDS |
| ATCACAAACTTCAACGGTGC+CGG | 0.506680 | 3.3:+84891489 | MS.gene32899:CDS |
| TTATTTGTGTCCATAGGCAT+AGG | 0.507889 | 3.3:-84893720 | None:intergenic |
| CGGCCATGAGCAGGGTTGCA+TGG | 0.510852 | 3.3:+84893696 | MS.gene32899:CDS |
| GGGCCATGCAACCCTGCTCA+TGG | 0.525954 | 3.3:-84893699 | None:intergenic |
| GAAGGTGGAGGCTGTGGCGT+TGG | 0.533993 | 3.3:+84893444 | MS.gene32899:intron |
| TTGCATACCAAATCCGATGC+CGG | 0.555970 | 3.3:-84891508 | None:intergenic |
| GGTGTTGGATGGGGTTTCGG+AGG | 0.556898 | 3.3:+84891645 | MS.gene32899:CDS |
| AAGGATCACATTTCAAGGAG+TGG | 0.579480 | 3.3:+84893521 | MS.gene32899:CDS |
| TTCATGTTATTTGTGTCCAT+AGG | 0.580701 | 3.3:-84893726 | None:intergenic |
| TATTTGTGTCCATAGGCATA+GGG | 0.581145 | 3.3:-84893719 | None:intergenic |
| TTACTGGTCGGCCATGAGCA+GGG | 0.589033 | 3.3:+84893688 | MS.gene32899:CDS |
| GTAGCAGGTATCGGTTGTCA+AGG | 0.627465 | 3.3:+84893502 | MS.gene32899:CDS |
| TGCTACCACCTATTACTGGT+CGG | 0.635169 | 3.3:+84893676 | MS.gene32899:CDS |
| ATGGTAATCACAAACTTCAA+CGG | 0.652372 | 3.3:+84891483 | MS.gene32899:CDS |
| CATGGCCGACCAGTAATAGG+TGG | 0.669558 | 3.3:-84893681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATAAGGATATCAATT+TGG | + | chr3.3:84893286-84893305 | MS.gene32899:intron | 15.0% |
| !! | TTATATAACTGATTGTATAT+TGG | + | chr3.3:84891808-84891827 | MS.gene32899:intron | 15.0% |
| !!! | AAATTGTTTTTTTTTTCCAT+AGG | + | chr3.3:84892065-84892084 | MS.gene32899:intron | 15.0% |
| !!! | TTTGTTAGTCTTATTTAATA+AGG | + | chr3.3:84893274-84893293 | MS.gene32899:intron | 15.0% |
| !! | AAATAAAAAATCAGTGTAGA+GGG | + | chr3.3:84893105-84893124 | MS.gene32899:intron | 20.0% |
| !! | AATTCCATCAAATCTAATAA+TGG | - | chr3.3:84893132-84893151 | None:intergenic | 20.0% |
| !! | GAAATTAATAGAAAAAGAGA+AGG | - | chr3.3:84892551-84892570 | None:intergenic | 20.0% |
| !! | GAATCAATGATTTATTAGAT+AGG | + | chr3.3:84893312-84893331 | MS.gene32899:intron | 20.0% |
| !! | TAAAAGAAAACAACCTATTA+TGG | + | chr3.3:84893173-84893192 | MS.gene32899:intron | 20.0% |
| !! | TATCATGTATGTTAATTTCT+AGG | + | chr3.3:84892636-84892655 | MS.gene32899:intron | 20.0% |
| !! | TTTCAATTCTCAGTATTTAA+TGG | + | chr3.3:84892567-84892586 | MS.gene32899:intron | 20.0% |
| !!! | TATGTTCAATTTCATTTTGA+AGG | + | chr3.3:84893426-84893445 | MS.gene32899:intron | 20.0% |
| !!! | TTTCATTAGTTGTTTTTTCT+CGG | + | chr3.3:84891858-84891877 | MS.gene32899:intron | 20.0% |
| !!! | TTTCATTTCTCAATTCTTTT+AGG | + | chr3.3:84891686-84891705 | MS.gene32899:intron | 20.0% |
| !!! | TTTTTCTTTTTTTCTTTTGC+AGG | + | chr3.3:84891600-84891619 | MS.gene32899:intron | 20.0% |
| ! | AAAACTGAACAATAGGTATA+TGG | - | chr3.3:84892313-84892332 | None:intergenic | 25.0% |
| ! | AAGAAATTGAAGAGAAATAC+CGG | - | chr3.3:84892855-84892874 | None:intergenic | 25.0% |
| ! | AGTAACAAAAACTGAACAAT+AGG | - | chr3.3:84892320-84892339 | None:intergenic | 25.0% |
| ! | ATATAAGGAATCTAAAAAGC+AGG | - | chr3.3:84891977-84891996 | None:intergenic | 25.0% |
| ! | ATGAAATTGAAGGATTGAAA+CGG | - | chr3.3:84891672-84891691 | None:intergenic | 25.0% |
| ! | CAAAATGACTATTATTTGCA+AGG | + | chr3.3:84893370-84893389 | MS.gene32899:intron | 25.0% |
| ! | GAAATAAAAAATCAGTGTAG+AGG | + | chr3.3:84893104-84893123 | MS.gene32899:intron | 25.0% |
| ! | GAAATTAACATACATGATAC+TGG | - | chr3.3:84892635-84892654 | None:intergenic | 25.0% |
| ! | GAATTGAGAAATGAAATTGA+AGG | - | chr3.3:84891682-84891701 | None:intergenic | 25.0% |
| ! | TGTATATTGGTATTTAGTAG+AGG | + | chr3.3:84891821-84891840 | MS.gene32899:intron | 25.0% |
| !! | TATGCATAACTCTAGAAATA+AGG | - | chr3.3:84892719-84892738 | None:intergenic | 25.0% |
| !! | TCTAGAAATAAGGATTTTTG+TGG | - | chr3.3:84892709-84892728 | None:intergenic | 25.0% |
| !!! | TGCAAATAATAGTCATTTTG+TGG | - | chr3.3:84893370-84893389 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTTGCAGGTTT+CGG | + | chr3.3:84891606-84891625 | MS.gene32899:intron | 25.0% |
| AATCAATAAGAGCTGAGAAT+TGG | + | chr3.3:84891921-84891940 | MS.gene32899:intron | 30.0% | |
| AATGGATGAATGTTGAGAAA+TGG | - | chr3.3:84891546-84891565 | None:intergenic | 30.0% | |
| AATTAGATAGAGATTGGAGA+AGG | - | chr3.3:84891571-84891590 | None:intergenic | 30.0% | |
| AGAAGTAAGAAATTCACGAT+AGG | + | chr3.3:84893596-84893615 | MS.gene32899:intron | 30.0% | |
| AGCAATCTACATGAAATTGA+AGG | - | chr3.3:84893660-84893679 | None:intergenic | 30.0% | |
| ATAAGACTAACAAAACCAGA+AGG | - | chr3.3:84893268-84893287 | None:intergenic | 30.0% | |
| ATGGTAATCACAAACTTCAA+CGG | + | chr3.3:84891483-84891502 | MS.gene32899:CDS | 30.0% | |
| ATTCTCAGTATTTAATGGCT+AGG | + | chr3.3:84892572-84892591 | MS.gene32899:intron | 30.0% | |
| CATAGATCAAATCAACAGAA+AGG | - | chr3.3:84892179-84892198 | None:intergenic | 30.0% | |
| GAGTCATAAACATTTGATGT+AGG | - | chr3.3:84893218-84893237 | None:intergenic | 30.0% | |
| GTTGTTAATGTTTATCCTTC+TGG | + | chr3.3:84893250-84893269 | MS.gene32899:intron | 30.0% | |
| TATCGTGAATTTCTTACTTC+TGG | - | chr3.3:84893597-84893616 | None:intergenic | 30.0% | |
| TATTGGTATTTAGTAGAGGA+TGG | + | chr3.3:84891825-84891844 | MS.gene32899:intron | 30.0% | |
| TCACTTTAGACAAATTCGTT+AGG | + | chr3.3:84891776-84891795 | MS.gene32899:intron | 30.0% | |
| TCTGATATGAGAAAGTCTAA+TGG | + | chr3.3:84892102-84892121 | MS.gene32899:intron | 30.0% | |
| TGATACTTAGAAATAACGCA+GGG | - | chr3.3:84892265-84892284 | None:intergenic | 30.0% | |
| TGCAATCTACATGAAATTGA+AGG | - | chr3.3:84893637-84893656 | None:intergenic | 30.0% | |
| TTAGATTCCTTATATTCACC+CGG | + | chr3.3:84891982-84892001 | MS.gene32899:intron | 30.0% | |
| TTGATACTTAGAAATAACGC+AGG | - | chr3.3:84892266-84892285 | None:intergenic | 30.0% | |
| ! | CATTGTTTCGCTGAATTTTA+AGG | + | chr3.3:84892909-84892928 | MS.gene32899:intron | 30.0% |
| ! | TCTGATCTTTTGTCTTTATC+TGG | + | chr3.3:84892461-84892480 | MS.gene32899:intron | 30.0% |
| !! | GTTCAATTTCATTTTGAAGG+TGG | + | chr3.3:84893429-84893448 | MS.gene32899:intron | 30.0% |
| !! | TTGACATTTTGACAGTTACA+TGG | - | chr3.3:84892021-84892040 | None:intergenic | 30.0% |
| !!! | ATACATGATACTGGTTTTGA+AGG | - | chr3.3:84892626-84892645 | None:intergenic | 30.0% |
| AATAAGAAAAGTGACGAGAG+CGG | - | chr3.3:84892424-84892443 | None:intergenic | 35.0% | |
| ACTTTGACAGTGATGGTTAT+GGG | + | chr3.3:84892989-84893008 | MS.gene32899:intron | 35.0% | |
| AGCGTGAATTAGATAGAGAT+TGG | - | chr3.3:84891577-84891596 | None:intergenic | 35.0% | |
| AGGTATGCCATTAAACTTCT+TGG | + | chr3.3:84892489-84892508 | MS.gene32899:intron | 35.0% | |
| ATGTAGGACAATGTCTATGA+TGG | - | chr3.3:84893202-84893221 | None:intergenic | 35.0% | |
| CATTAACAACCAAGTCACTA+CGG | - | chr3.3:84893240-84893259 | None:intergenic | 35.0% | |
| CCAATGTGATTCCCAATATA+GGG | + | chr3.3:84892763-84892782 | MS.gene32899:intron | 35.0% | |
| CTACATCAAGGCAACATATA+CGG | + | chr3.3:84892662-84892681 | MS.gene32899:intron | 35.0% | |
| GAATCTAAAAAGCAGGAGTA+TGG | - | chr3.3:84891970-84891989 | None:intergenic | 35.0% | |
| GATGGAATTGTAAGATCTAG+TGG | + | chr3.3:84893143-84893162 | MS.gene32899:intron | 35.0% | |
| GATTAAAAACTCGAAGCCTA+TGG | - | chr3.3:84892084-84892103 | None:intergenic | 35.0% | |
| GGGTCCATTATTAGATTTGA+TGG | + | chr3.3:84893125-84893144 | MS.gene32899:intron | 35.0% | |
| GGTATGCCATTAAACTTCTT+GGG | + | chr3.3:84892490-84892509 | MS.gene32899:intron | 35.0% | |
| TAAGGAGAAAAGTGATAGCA+TGG | + | chr3.3:84893554-84893573 | MS.gene32899:CDS | 35.0% | |
| TATATGTTGCCTTGATGTAG+AGG | - | chr3.3:84892662-84892681 | None:intergenic | 35.0% | |
| TATTTGTGTCCATAGGCATA+GGG | - | chr3.3:84893722-84893741 | None:intergenic | 35.0% | |
| TCAATCATGCTGGATGTTAT+GGG | - | chr3.3:84893068-84893087 | None:intergenic | 35.0% | |
| TCCAATGTGATTCCCAATAT+AGG | + | chr3.3:84892762-84892781 | MS.gene32899:intron | 35.0% | |
| TGAATTTCTTACTTCTGGAC+TGG | - | chr3.3:84893592-84893611 | None:intergenic | 35.0% | |
| TTATTTGTGTCCATAGGCAT+AGG | - | chr3.3:84893723-84893742 | None:intergenic | 35.0% | |
| TTGTCAAGGATCACATTTCA+AGG | + | chr3.3:84893516-84893535 | MS.gene32899:CDS | 35.0% | |
| ! | AGGAGTGGAATTTGATAGTA+AGG | + | chr3.3:84893536-84893555 | MS.gene32899:CDS | 35.0% |
| ! | GGTGCATTGCATTATTTTCT+AGG | - | chr3.3:84892292-84892311 | None:intergenic | 35.0% |
| !! | AGTCATTTTGTGGTTACAGT+GGG | - | chr3.3:84893360-84893379 | None:intergenic | 35.0% |
| !! | CAATTTCATTTTGAAGGTGG+AGG | + | chr3.3:84893432-84893451 | MS.gene32899:intron | 35.0% |
| !! | TAGTCATTTTGTGGTTACAG+TGG | - | chr3.3:84893361-84893380 | None:intergenic | 35.0% |
| !! | TCTATGATGGACACCATAAT+AGG | - | chr3.3:84893189-84893208 | None:intergenic | 35.0% |
| !! | TGTTTCGCTGAATTTTAAGG+TGG | + | chr3.3:84892912-84892931 | MS.gene32899:intron | 35.0% |
| !!! | GTTTCGCTGAATTTTAAGGT+GGG | + | chr3.3:84892913-84892932 | MS.gene32899:intron | 35.0% |
| !!! | TAGTTGTTTTTTCTCGGTAG+AGG | + | chr3.3:84891864-84891883 | MS.gene32899:intron | 35.0% |
| AAGGATCACATTTCAAGGAG+TGG | + | chr3.3:84893521-84893540 | MS.gene32899:CDS | 40.0% | |
| AATCGTCAAGTGCCTGATTT+GGG | - | chr3.3:84892790-84892809 | None:intergenic | 40.0% | |
| AGATTGCTACCACCTATTAC+TGG | + | chr3.3:84893672-84893691 | MS.gene32899:intron | 40.0% | |
| ATAAGAAAAGTGACGAGAGC+GGG | - | chr3.3:84892423-84892442 | None:intergenic | 40.0% | |
| ATTGGACTCTAATAACACGC+CGG | - | chr3.3:84892748-84892767 | None:intergenic | 40.0% | |
| ATTGTGAGAGATTCCCTACT+GGG | + | chr3.3:84892953-84892972 | MS.gene32899:intron | 40.0% | |
| CACTTTGACAGTGATGGTTA+TGG | + | chr3.3:84892988-84893007 | MS.gene32899:intron | 40.0% | |
| CAGCATGATTGAGAGAATGA+AGG | + | chr3.3:84893076-84893095 | MS.gene32899:intron | 40.0% | |
| CATGATTGAGAGAATGAAGG+AGG | + | chr3.3:84893079-84893098 | MS.gene32899:intron | 40.0% | |
| CCAAGACCCAAGAAGTTTAA+TGG | - | chr3.3:84892499-84892518 | None:intergenic | 40.0% | |
| CCATTAAACTTCTTGGGTCT+TGG | + | chr3.3:84892496-84892515 | MS.gene32899:CDS | 40.0% | |
| CCCTATATTGGGAATCACAT+TGG | - | chr3.3:84892766-84892785 | None:intergenic | 40.0% | |
| CGGTTGACAACAATATTAGC+TGG | + | chr3.3:84892682-84892701 | MS.gene32899:intron | 40.0% | |
| CTCAATCATGCTGGATGTTA+TGG | - | chr3.3:84893069-84893088 | None:intergenic | 40.0% | |
| CTTACTGTGAAGTGATTGCT+TGG | + | chr3.3:84892147-84892166 | MS.gene32899:intron | 40.0% | |
| CTTCATTCTCTCAATCATGC+TGG | - | chr3.3:84893078-84893097 | None:intergenic | 40.0% | |
| TAACCATCACTGTCAAAGTG+CGG | - | chr3.3:84892988-84893007 | None:intergenic | 40.0% | |
| TAGAGATTGGAGAAGGTGAA+TGG | - | chr3.3:84891564-84891583 | None:intergenic | 40.0% | |
| TAGGTTTCCTTAATTCCCCT+AGG | + | chr3.3:84893331-84893350 | MS.gene32899:intron | 40.0% | |
| TCTTGTACTTCAATGTCGTG+CGG | + | chr3.3:84892871-84892890 | MS.gene32899:intron | 40.0% | |
| TTTAGGCTGCAATTTGACGT+TGG | + | chr3.3:84891703-84891722 | MS.gene32899:intron | 40.0% | |
| TTTATGACTCCGTAGTGACT+TGG | + | chr3.3:84893228-84893247 | MS.gene32899:intron | 40.0% | |
| TTTGTCTTTATCTGGTGCAC+AGG | + | chr3.3:84892469-84892488 | MS.gene32899:intron | 40.0% | |
| ! | ACATGGTTTCTTTGAGAAGC+CGG | - | chr3.3:84892004-84892023 | None:intergenic | 40.0% |
| ! | ATTTCTAGGCCTCTACATCA+AGG | + | chr3.3:84892650-84892669 | MS.gene32899:intron | 40.0% |
| ! | TCATTTTGTGGTTACAGTGG+GGG | - | chr3.3:84893358-84893377 | None:intergenic | 40.0% |
| !! | CTAGGCTTGCTATATGATGT+GGG | + | chr3.3:84892590-84892609 | MS.gene32899:intron | 40.0% |
| !! | CTGATTTGGGACCCTATATT+GGG | - | chr3.3:84892777-84892796 | None:intergenic | 40.0% |
| !! | GTCATTTTGTGGTTACAGTG+GGG | - | chr3.3:84893359-84893378 | None:intergenic | 40.0% |
| !!! | TGAATTTTAAGGTGGGTGGA+GGG | + | chr3.3:84892920-84892939 | MS.gene32899:intron | 40.0% |
| !!! | TGTTTTTTCTCGGTAGAGGA+TGG | + | chr3.3:84891868-84891887 | MS.gene32899:intron | 40.0% |
| AAATACCGGAGAACAAGCGT+TGG | - | chr3.3:84892841-84892860 | None:intergenic | 45.0% | |
| AGAGTTATGCATAACCCCAC+CGG | + | chr3.3:84892726-84892745 | MS.gene32899:intron | 45.0% | |
| AGTGATGGTTATGGGATTGG+AGG | + | chr3.3:84892997-84893016 | MS.gene32899:intron | 45.0% | |
| ATCACAAACTTCAACGGTGC+CGG | + | chr3.3:84891489-84891508 | MS.gene32899:CDS | 45.0% | |
| CAAATCAGGCACTTGACGAT+TGG | + | chr3.3:84892789-84892808 | MS.gene32899:intron | 45.0% | |
| CAATCGTCAAGTGCCTGATT+TGG | - | chr3.3:84892791-84892810 | None:intergenic | 45.0% | |
| CAGTAGGGAATCTCTCACAA+TGG | - | chr3.3:84892954-84892973 | None:intergenic | 45.0% | |
| CATTGTGAGAGATTCCCTAC+TGG | + | chr3.3:84892952-84892971 | MS.gene32899:intron | 45.0% | |
| CCAATATAGGGTCCCAAATC+AGG | + | chr3.3:84892775-84892794 | MS.gene32899:intron | 45.0% | |
| CTCGGTAGAGGATGGAAAAT+GGG | + | chr3.3:84891876-84891895 | MS.gene32899:intron | 45.0% | |
| CTGCTTATGGTAGCAGGTAT+CGG | + | chr3.3:84893493-84893512 | MS.gene32899:CDS | 45.0% | |
| CTTGTACTTCAATGTCGTGC+GGG | + | chr3.3:84892872-84892891 | MS.gene32899:intron | 45.0% | |
| GACAGTGATGGTTATGGGAT+TGG | + | chr3.3:84892994-84893013 | MS.gene32899:intron | 45.0% | |
| GGAATCTCTCACAATGGAAC+CGG | - | chr3.3:84892948-84892967 | None:intergenic | 45.0% | |
| GTTATGGGATTGGAGGAAAC+AGG | + | chr3.3:84893004-84893023 | MS.gene32899:intron | 45.0% | |
| TAAGAAAAGTGACGAGAGCG+GGG | - | chr3.3:84892422-84892441 | None:intergenic | 45.0% | |
| TCTCGGTAGAGGATGGAAAA+TGG | + | chr3.3:84891875-84891894 | MS.gene32899:intron | 45.0% | |
| TGAGAAGCCGGGTGAATATA+AGG | - | chr3.3:84891992-84892011 | None:intergenic | 45.0% | |
| TGCTACCACCTATTACTGGT+CGG | + | chr3.3:84893676-84893695 | MS.gene32899:CDS | 45.0% | |
| TTGCATACCAAATCCGATGC+CGG | - | chr3.3:84891511-84891530 | None:intergenic | 45.0% | |
| TTGGTACTGCTTATGGTAGC+AGG | + | chr3.3:84893487-84893506 | MS.gene32899:CDS | 45.0% | |
| TTGTACTTCAATGTCGTGCG+GGG | + | chr3.3:84892873-84892892 | MS.gene32899:intron | 45.0% | |
| ! | CATGGTTTCTTTGAGAAGCC+GGG | - | chr3.3:84892003-84892022 | None:intergenic | 45.0% |
| ! | GAAACAGGAACGGTACTGAA+TGG | + | chr3.3:84893019-84893038 | MS.gene32899:intron | 45.0% |
| !! | CCTGATTTGGGACCCTATAT+TGG | - | chr3.3:84892778-84892797 | None:intergenic | 45.0% |
| !! | GCTAGGCTTGCTATATGATG+TGG | + | chr3.3:84892589-84892608 | MS.gene32899:intron | 45.0% |
| !! | TCTTTTGCAGGTTTCGGTGT+TGG | + | chr3.3:84891612-84891631 | MS.gene32899:intron | 45.0% |
| !! | TGGGGTTTTGGTACTGCTTA+TGG | + | chr3.3:84893480-84893499 | MS.gene32899:CDS | 45.0% |
| !!! | CTGAATTTTAAGGTGGGTGG+AGG | + | chr3.3:84892919-84892938 | MS.gene32899:intron | 45.0% |
| !!! | TCGCTGAATTTTAAGGTGGG+TGG | + | chr3.3:84892916-84892935 | MS.gene32899:intron | 45.0% |
| ACTCTAATAACACGCCGGTG+GGG | - | chr3.3:84892743-84892762 | None:intergenic | 50.0% | |
| GACTCTAATAACACGCCGGT+GGG | - | chr3.3:84892744-84892763 | None:intergenic | 50.0% | |
| GGGATTGGAGGAAACAGGAA+CGG | + | chr3.3:84893009-84893028 | MS.gene32899:intron | 50.0% | |
| GGTAGAGGATGGAAAATGGG+CGG | + | chr3.3:84891879-84891898 | MS.gene32899:intron | 50.0% | |
| GTGTTCCAACGCTTGTTCTC+CGG | + | chr3.3:84892833-84892852 | MS.gene32899:intron | 50.0% | |
| TCACCGCACTTTGACAGTGA+TGG | + | chr3.3:84892982-84893001 | MS.gene32899:intron | 50.0% | |
| ! | AACTTCTTGGGTCTTGGTGC+AGG | + | chr3.3:84892502-84892521 | MS.gene32899:CDS | 50.0% |
| !! | CATTTTGAAGGTGGAGGCTG+TGG | + | chr3.3:84893438-84893457 | MS.gene32899:intron | 50.0% |
| !! | GTAGCAGGTATCGGTTGTCA+AGG | + | chr3.3:84893502-84893521 | MS.gene32899:CDS | 50.0% |
| !! | TTCGGTGTTGGATGGGGTTT+CGG | + | chr3.3:84891642-84891661 | MS.gene32899:CDS | 50.0% |
| !! | TTCGGTGTTGGTTGCGGTTT+CGG | + | chr3.3:84891624-84891643 | MS.gene32899:CDS | 50.0% |
| !! | TTGCGGTTTCGGTGTTGGAT+GGG | + | chr3.3:84891635-84891654 | MS.gene32899:CDS | 50.0% |
| AAAAGTGACGAGAGCGGGGT+GGG | - | chr3.3:84892418-84892437 | None:intergenic | 55.0% | |
| ATGTCGTGCGGGGAGCAAAA+TGG | + | chr3.3:84892883-84892902 | MS.gene32899:intron | 55.0% | |
| ATTACTGGTCGGCCATGAGC+AGG | + | chr3.3:84893687-84893706 | MS.gene32899:CDS | 55.0% | |
| CATGGCCGACCAGTAATAGG+TGG | - | chr3.3:84893684-84893703 | None:intergenic | 55.0% | |
| GCGGTGAAGCAAACCCAGTA+GGG | - | chr3.3:84892969-84892988 | None:intergenic | 55.0% | |
| GCTCATGGCCGACCAGTAAT+AGG | - | chr3.3:84893687-84893706 | None:intergenic | 55.0% | |
| GGACTCTAATAACACGCCGG+TGG | - | chr3.3:84892745-84892764 | None:intergenic | 55.0% | |
| GTTGCATGGCCCTATGCCTA+TGG | + | chr3.3:84893710-84893729 | MS.gene32899:CDS | 55.0% | |
| TGCGGTGAAGCAAACCCAGT+AGG | - | chr3.3:84892970-84892989 | None:intergenic | 55.0% | |
| TGGGGGACCTAGGGGAATTA+AGG | - | chr3.3:84893341-84893360 | None:intergenic | 55.0% | |
| TGGTTACAGTGGGGGACCTA+GGG | - | chr3.3:84893350-84893369 | None:intergenic | 55.0% | |
| TTAAGGTGGGTGGAGGGTTC+CGG | + | chr3.3:84892926-84892945 | MS.gene32899:intron | 55.0% | |
| TTACTGGTCGGCCATGAGCA+GGG | + | chr3.3:84893688-84893707 | MS.gene32899:CDS | 55.0% | |
| ! | CGTTGGAGTGGGACTTGGTT+GGG | + | chr3.3:84893461-84893480 | MS.gene32899:CDS | 55.0% |
| ! | GTTGGAGTGGGACTTGGTTG+GGG | + | chr3.3:84893462-84893481 | MS.gene32899:CDS | 55.0% |
| ! | GTTGGTTGCGGTTTCGGTGT+TGG | + | chr3.3:84891630-84891649 | MS.gene32899:CDS | 55.0% |
| !! | AACTTCAACGGTGCCGGCAT+CGG | + | chr3.3:84891495-84891514 | MS.gene32899:CDS | 55.0% |
| !! | GCAGGTTTCGGTGTTGGTTG+CGG | + | chr3.3:84891618-84891637 | MS.gene32899:intron | 55.0% |
| !! | GTGGGACTTGGTTGGGGTTT+TGG | + | chr3.3:84893468-84893487 | MS.gene32899:CDS | 55.0% |
| !! | GTTGCGGTTTCGGTGTTGGA+TGG | + | chr3.3:84891634-84891653 | MS.gene32899:CDS | 55.0% |
| !! | TGCGGTTTCGGTGTTGGATG+GGG | + | chr3.3:84891636-84891655 | MS.gene32899:CDS | 55.0% |
| AAAGTGACGAGAGCGGGGTG+GGG | - | chr3.3:84892417-84892436 | None:intergenic | 60.0% | |
| GAAAAGTGACGAGAGCGGGG+TGG | - | chr3.3:84892419-84892438 | None:intergenic | 60.0% | |
| GGTTACAGTGGGGGACCTAG+GGG | - | chr3.3:84893349-84893368 | None:intergenic | 60.0% | |
| GTGGTTACAGTGGGGGACCT+AGG | - | chr3.3:84893351-84893370 | None:intergenic | 60.0% | |
| GTTGGGGGGAGGAGCTAACT+TGG | - | chr3.3:84892395-84892414 | None:intergenic | 60.0% | |
| ! | GCGTTGGAGTGGGACTTGGT+TGG | + | chr3.3:84893460-84893479 | MS.gene32899:CDS | 60.0% |
| ! | GGTGTTGGATGGGGTTTCGG+AGG | + | chr3.3:84891645-84891664 | MS.gene32899:CDS | 60.0% |
| ! | TGTGGCGTTGGAGTGGGACT+TGG | + | chr3.3:84893456-84893475 | MS.gene32899:CDS | 60.0% |
| !! | AACGGTGCCGGCATCGGATT+TGG | + | chr3.3:84891501-84891520 | MS.gene32899:CDS | 60.0% |
| CGGCCATGAGCAGGGTTGCA+TGG | + | chr3.3:84893696-84893715 | MS.gene32899:CDS | 65.0% | |
| GAAGGTGGAGGCTGTGGCGT+TGG | + | chr3.3:84893444-84893463 | MS.gene32899:intron | 65.0% | |
| GGGCCATGCAACCCTGCTCA+TGG | - | chr3.3:84893702-84893721 | None:intergenic | 65.0% | |
| ! | GGAGGCTGTGGCGTTGGAGT+GGG | + | chr3.3:84893450-84893469 | MS.gene32899:CDS | 65.0% |
| ! | TGGAGGCTGTGGCGTTGGAG+TGG | + | chr3.3:84893449-84893468 | MS.gene32899:CDS | 65.0% |
| ACGAGAGCGGGGTGGGGTTG+GGG | - | chr3.3:84892411-84892430 | None:intergenic | 70.0% | |
| GACGAGAGCGGGGTGGGGTT+GGG | - | chr3.3:84892412-84892431 | None:intergenic | 70.0% | |
| TGACGAGAGCGGGGTGGGGT+TGG | - | chr3.3:84892413-84892432 | None:intergenic | 70.0% | |
| CGAGAGCGGGGTGGGGTTGG+GGG | - | chr3.3:84892410-84892429 | None:intergenic | 75.0% | |
| GAGAGCGGGGTGGGGTTGGG+GGG | - | chr3.3:84892409-84892428 | None:intergenic | 75.0% | |
| ! | AGCGGGGTGGGGTTGGGGGG+AGG | - | chr3.3:84892406-84892425 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84891483 | 84893742 | 84891483 | ID=MS.gene32899 |
| chr3.3 | mRNA | 84891483 | 84893742 | 84891483 | ID=MS.gene32899.t1;Parent=MS.gene32899 |
| chr3.3 | exon | 84891483 | 84891522 | 84891483 | ID=MS.gene32899.t1.exon1;Parent=MS.gene32899.t1 |
| chr3.3 | CDS | 84891483 | 84891522 | 84891483 | ID=cds.MS.gene32899.t1;Parent=MS.gene32899.t1 |
| chr3.3 | exon | 84891622 | 84891666 | 84891622 | ID=MS.gene32899.t1.exon2;Parent=MS.gene32899.t1 |
| chr3.3 | CDS | 84891622 | 84891666 | 84891622 | ID=cds.MS.gene32899.t1;Parent=MS.gene32899.t1 |
| chr3.3 | exon | 84892491 | 84892523 | 84892491 | ID=MS.gene32899.t1.exon3;Parent=MS.gene32899.t1 |
| chr3.3 | CDS | 84892491 | 84892523 | 84892491 | ID=cds.MS.gene32899.t1;Parent=MS.gene32899.t1 |
| chr3.3 | exon | 84893448 | 84893599 | 84893448 | ID=MS.gene32899.t1.exon4;Parent=MS.gene32899.t1 |
| chr3.3 | CDS | 84893448 | 84893599 | 84893448 | ID=cds.MS.gene32899.t1;Parent=MS.gene32899.t1 |
| chr3.3 | exon | 84893674 | 84893742 | 84893674 | ID=MS.gene32899.t1.exon5;Parent=MS.gene32899.t1 |
| chr3.3 | CDS | 84893674 | 84893742 | 84893674 | ID=cds.MS.gene32899.t1;Parent=MS.gene32899.t1 |
| Gene Sequence |
| Protein sequence |
