Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90431.t1 | XP_003595922.2 | 91.8 | 194 | 16 | 0 | 46 | 239 | 1178 | 1371 | 6.00E-48 | 201.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90431.t1 | A4GSN8 | 61.9 | 97 | 36 | 1 | 47 | 142 | 1177 | 1273 | 2.0e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90431.t1 | G7IT80 | 91.8 | 194 | 16 | 0 | 46 | 239 | 1178 | 1371 | 4.3e-48 | 201.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90431 | 0.874303 | 7.50E-68 | -1.69E-46 |
| MS.gene049159 | MS.gene90431 | 0.844476 | 7.38E-59 | -1.69E-46 |
| MS.gene049254 | MS.gene90431 | 0.814881 | 1.23E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene90431 | 0.82081 | 5.63E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene90431 | 0.810113 | 1.35E-50 | -1.69E-46 |
| MS.gene049585 | MS.gene90431 | 0.856625 | 2.83E-62 | -1.69E-46 |
| MS.gene049711 | MS.gene90431 | 0.805227 | 1.48E-49 | -1.69E-46 |
| MS.gene049744 | MS.gene90431 | 0.820004 | 8.62E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene90431 | 0.819638 | 1.05E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene90431 | 0.819027 | 1.44E-52 | -1.69E-46 |
| MS.gene050224 | MS.gene90431 | 0.807333 | 5.32E-50 | -1.69E-46 |
| MS.gene050361 | MS.gene90431 | 0.80601 | 1.01E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene90431 | 0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene90431 | 0.828503 | 8.67E-55 | -1.69E-46 |
| MS.gene050556 | MS.gene90431 | 0.801704 | 7.94E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene90431 | 0.82972 | 4.40E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene90431 | 0.811913 | 5.52E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene90431 | 0.817804 | 2.73E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene90431 | 0.812641 | 3.83E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene90431 | 0.801361 | 9.34E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene90431 | 0.853137 | 2.92E-61 | -1.69E-46 |
| MS.gene051180 | MS.gene90431 | 0.821939 | 3.09E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene90431 | 0.84192 | 3.55E-58 | -1.69E-46 |
| MS.gene051210 | MS.gene90431 | 0.848478 | 5.98E-60 | -1.69E-46 |
| MS.gene051247 | MS.gene90431 | 0.805504 | 1.29E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene90431 | 0.802456 | 5.56E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene90431 | 0.800812 | 1.21E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene90431 | 0.802023 | 6.83E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene90431 | 0.807845 | 4.14E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene90431 | 0.831617 | 1.51E-55 | -1.69E-46 |
| MS.gene051800 | MS.gene90431 | 0.852298 | 5.06E-61 | -1.69E-46 |
| MS.gene052020 | MS.gene90431 | 0.801574 | 8.44E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene90431 | 0.848988 | 4.32E-60 | -1.69E-46 |
| MS.gene052323 | MS.gene90431 | 0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene90431 | 0.818255 | 2.16E-52 | -1.69E-46 |
| MS.gene052514 | MS.gene90431 | 0.801643 | 8.18E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene90431 | 0.836973 | 6.84E-57 | -1.69E-46 |
| MS.gene052609 | MS.gene90431 | 0.890207 | 1.21E-73 | -1.69E-46 |
| MS.gene052665 | MS.gene90431 | 0.825147 | 5.49E-54 | -1.69E-46 |
| MS.gene052669 | MS.gene90431 | 0.800571 | 1.35E-48 | -1.69E-46 |
| MS.gene052677 | MS.gene90431 | 0.800524 | 1.38E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene90431 | 0.810799 | 9.63E-51 | -1.69E-46 |
| MS.gene052775 | MS.gene90431 | 0.815788 | 7.73E-52 | -1.69E-46 |
| MS.gene052776 | MS.gene90431 | 0.8346 | 2.73E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene90431 | 0.821324 | 4.29E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene90431 | 0.829291 | 5.59E-55 | -1.69E-46 |
| MS.gene052994 | MS.gene90431 | 0.824403 | 8.23E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene90431 | 0.84733 | 1.24E-59 | -1.69E-46 |
| MS.gene053226 | MS.gene90431 | 0.80643 | 8.26E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene90431 | 0.8182 | 2.22E-52 | -1.69E-46 |
| MS.gene053565 | MS.gene90431 | 0.80166 | 8.11E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene90431 | 0.80073 | 1.26E-48 | -1.69E-46 |
| MS.gene054139 | MS.gene90431 | 0.806039 | 9.98E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene90431 | 0.818456 | 1.94E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene90431 | 0.800573 | 1.35E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene90431 | 0.818676 | 1.73E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene90431 | 0.821622 | 3.66E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene90431 | 0.807525 | 4.84E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene90431 | 0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene90431 | 0.815797 | 7.69E-52 | -1.69E-46 |
| MS.gene054824 | MS.gene90431 | 0.806399 | 8.38E-50 | -1.69E-46 |
| MS.gene054943 | MS.gene90431 | 0.823579 | 1.28E-53 | -1.69E-46 |
| MS.gene055227 | MS.gene90431 | 0.814436 | 1.54E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene90431 | 0.805953 | 1.04E-49 | -1.69E-46 |
| MS.gene055310 | MS.gene90431 | 0.833619 | 4.80E-56 | -1.69E-46 |
| MS.gene055311 | MS.gene90431 | 0.831453 | 1.66E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene90431 | 0.844077 | 9.45E-59 | -1.69E-46 |
| MS.gene055465 | MS.gene90431 | 0.820611 | 6.26E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene90431 | 0.809531 | 1.81E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene90431 | 0.845755 | 3.33E-59 | -1.69E-46 |
| MS.gene055513 | MS.gene90431 | 0.831669 | 1.46E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene90431 | 0.816146 | 6.43E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene90431 | 0.82143 | 4.05E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene90431 | 0.840499 | 8.38E-58 | -1.69E-46 |
| MS.gene056045 | MS.gene90431 | 0.824485 | 7.87E-54 | -1.69E-46 |
| MS.gene05604 | MS.gene90431 | 0.808626 | 2.82E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene90431 | 0.821087 | 4.86E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene90431 | 0.807467 | 4.98E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene90431 | 0.809738 | 1.63E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene90431 | 0.820989 | 5.12E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene90431 | 0.851378 | 9.23E-61 | -1.69E-46 |
| MS.gene056480 | MS.gene90431 | 0.816824 | 4.53E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene90431 | 0.869406 | 3.17E-66 | -1.69E-46 |
| MS.gene056519 | MS.gene90431 | 0.801897 | 7.25E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene90431 | 0.803113 | 4.07E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene90431 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene056622 | MS.gene90431 | 0.8278 | 1.28E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene90431 | 0.805126 | 1.55E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene90431 | 0.807811 | 4.21E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene90431 | 0.809117 | 2.22E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene90431 | 0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene90431 | 0.817221 | 3.69E-52 | -1.69E-46 |
| MS.gene057446 | MS.gene90431 | 0.81819 | 2.23E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene90431 | 0.817855 | 2.65E-52 | -1.69E-46 |
| MS.gene057600 | MS.gene90431 | 0.836634 | 8.34E-57 | -1.69E-46 |
| MS.gene057601 | MS.gene90431 | 0.805422 | 1.35E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene90431 | 0.813819 | 2.11E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene90431 | 0.860219 | 2.41E-63 | -1.69E-46 |
| MS.gene057915 | MS.gene90431 | 0.863075 | 3.22E-64 | -1.69E-46 |
| MS.gene058010 | MS.gene90431 | 0.84464 | 6.67E-59 | -1.69E-46 |
| MS.gene058081 | MS.gene90431 | 0.831928 | 1.26E-55 | -1.69E-46 |
| MS.gene058214 | MS.gene90431 | 0.805199 | 1.50E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene90431 | 0.8408 | 6.99E-58 | -1.69E-46 |
| MS.gene058292 | MS.gene90431 | 0.822434 | 2.37E-53 | -1.69E-46 |
| MS.gene058330 | MS.gene90431 | 0.805813 | 1.11E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene90431 | 0.8039 | 2.80E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene90431 | 0.800791 | 1.22E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene90431 | 0.810258 | 1.26E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene90431 | 0.802048 | 6.75E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene90431 | 0.833661 | 4.69E-56 | -1.69E-46 |
| MS.gene058639 | MS.gene90431 | 0.838045 | 3.63E-57 | -1.69E-46 |
| MS.gene058647 | MS.gene90431 | 0.847694 | 9.83E-60 | -1.69E-46 |
| MS.gene058919 | MS.gene90431 | 0.882178 | 1.29E-70 | -1.69E-46 |
| MS.gene058979 | MS.gene90431 | 0.833066 | 6.60E-56 | -1.69E-46 |
| MS.gene05897 | MS.gene90431 | 0.800932 | 1.14E-48 | -1.69E-46 |
| MS.gene059171 | MS.gene90431 | 0.804832 | 1.79E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene90431 | 0.81355 | 2.42E-51 | -1.69E-46 |
| MS.gene059331 | MS.gene90431 | 0.828363 | 9.37E-55 | -1.69E-46 |
| MS.gene059335 | MS.gene90431 | 0.819567 | 1.09E-52 | -1.69E-46 |
| MS.gene059438 | MS.gene90431 | 0.80555 | 1.26E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene90431 | 0.867629 | 1.19E-65 | -1.69E-46 |
| MS.gene059561 | MS.gene90431 | 0.813075 | 3.08E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene90431 | 0.844144 | 9.07E-59 | -1.69E-46 |
| MS.gene059713 | MS.gene90431 | 0.84148 | 4.63E-58 | -1.69E-46 |
| MS.gene059725 | MS.gene90431 | 0.844365 | 7.91E-59 | -1.69E-46 |
| MS.gene05973 | MS.gene90431 | 0.823489 | 1.35E-53 | -1.69E-46 |
| MS.gene05978 | MS.gene90431 | 0.807101 | 5.96E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene90431 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene90431 | 0.825529 | 4.46E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene90431 | 0.818532 | 1.87E-52 | -1.69E-46 |
| MS.gene060167 | MS.gene90431 | 0.817557 | 3.10E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene90431 | 0.824094 | 9.72E-54 | -1.69E-46 |
| MS.gene060373 | MS.gene90431 | 0.801741 | 7.80E-49 | -1.69E-46 |
| MS.gene060380 | MS.gene90431 | 0.827002 | 1.99E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene90431 | 0.857618 | 1.44E-62 | -1.69E-46 |
| MS.gene060637 | MS.gene90431 | 0.85736 | 1.72E-62 | -1.69E-46 |
| MS.gene060685 | MS.gene90431 | 0.802941 | 4.42E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene90431 | 0.83015 | 3.45E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene90431 | 0.801082 | 1.06E-48 | -1.69E-46 |
| MS.gene060933 | MS.gene90431 | 0.842087 | 3.20E-58 | -1.69E-46 |
| MS.gene060935 | MS.gene90431 | 0.817493 | 3.20E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene90431 | 0.821592 | 3.72E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene90431 | 0.831024 | 2.11E-55 | -1.69E-46 |
| MS.gene061006 | MS.gene90431 | 0.817986 | 2.48E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene90431 | 0.80386 | 2.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90431.t1 | MTR_2g063480 | 98.326 | 239 | 4 | 0 | 1 | 239 | 1133 | 1371 | 4.43e-154 | 472 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90431.t1 | AT1G79280 | 57.500 | 240 | 101 | 1 | 1 | 239 | 1153 | 1392 | 1.15e-77 | 255 |
| MS.gene90431.t1 | AT1G79280 | 57.500 | 240 | 101 | 1 | 1 | 239 | 1131 | 1370 | 1.21e-77 | 254 |
| MS.gene90431.t1 | AT1G79280 | 57.500 | 240 | 101 | 1 | 1 | 239 | 1132 | 1371 | 1.25e-77 | 254 |
Find 35 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAAATCCTTACAACTTC+AGG | 0.264171 | 2.1:+32908918 | MS.gene90431:CDS |
| GAAACTTGTACAAGATTTGC+AGG | 0.335433 | 2.1:+32909637 | MS.gene90431:CDS |
| AGAAGTTTCATTATTAAAAC+AGG | 0.376493 | 2.1:+32908216 | MS.gene90431:CDS |
| AATGTATCACCCCTACTTCC+AGG | 0.386116 | 2.1:-32908041 | None:intergenic |
| TGGTATTTCACCTGGAAGTA+GGG | 0.408605 | 2.1:+32908031 | MS.gene90431:CDS |
| ATTGCGTGAACTGGCAGAAC+AGG | 0.411773 | 2.1:+32909337 | MS.gene90431:CDS |
| CTGGTATTTCACCTGGAAGT+AGG | 0.415578 | 2.1:+32908030 | MS.gene90431:CDS |
| AAGAGAAAGAGAAAGTGAAC+TGG | 0.415986 | 2.1:+32909394 | MS.gene90431:CDS |
| TTGAGGCATTGCATATTCAA+TGG | 0.420484 | 2.1:+32907985 | MS.gene90431:CDS |
| ATCAATAACCTGAAGTTGTA+AGG | 0.423562 | 2.1:-32908926 | None:intergenic |
| AAGATTCTCTAGATTATCTC+TGG | 0.443938 | 2.1:-32909369 | None:intergenic |
| ATCATCTTAAGTTGCTTGAA+AGG | 0.444321 | 2.1:+32909576 | MS.gene90431:intron |
| GCATATTCAATGGGCTGAAA+AGG | 0.450397 | 2.1:+32907995 | MS.gene90431:CDS |
| GTGAGAGTAATATGCAGCTC+AGG | 0.465983 | 2.1:+32909115 | MS.gene90431:CDS |
| GGAAGTAGGGGTGATACATT+TGG | 0.471939 | 2.1:+32908044 | MS.gene90431:CDS |
| TGAGGCATTGCATATTCAAT+GGG | 0.477297 | 2.1:+32907986 | MS.gene90431:CDS |
| TTGTTAGAAATTGCGTGAAC+TGG | 0.492676 | 2.1:+32909328 | MS.gene90431:intron |
| GGTGATACATTTGGTGATGC+TGG | 0.497160 | 2.1:+32908053 | MS.gene90431:CDS |
| GAAAAGGAGCGTAGTGCTGC+TGG | 0.507582 | 2.1:+32908011 | MS.gene90431:CDS |
| ATACGATGAAATAAATGAGC+AGG | 0.518876 | 2.1:+32907446 | MS.gene90431:CDS |
| AAAGGAACATCTCAATTGCA+AGG | 0.559728 | 2.1:+32909454 | MS.gene90431:CDS |
| ACTAAAGGCTAGGTGGGAAG+AGG | 0.561406 | 2.1:+32907380 | MS.gene90431:CDS |
| AGTGCTGCTGGTATTTCACC+TGG | 0.569668 | 2.1:+32908023 | MS.gene90431:CDS |
| GTGTTGACAGAATGAACTAA+AGG | 0.575594 | 2.1:+32907365 | None:intergenic |
| AAAGCTGCGATTACAGTCAC+AGG | 0.575803 | 2.1:+32908240 | MS.gene90431:CDS |
| TCTCAATTGCAAGGTTTCAG+AGG | 0.593891 | 2.1:+32909463 | MS.gene90431:CDS |
| GAATGAACTAAAGGCTAGGT+GGG | 0.594108 | 2.1:+32907374 | None:intergenic |
| GAAAGAGAAAGTGAACTGGA+AGG | 0.597218 | 2.1:+32909398 | MS.gene90431:CDS |
| GGTATTTCACCTGGAAGTAG+GGG | 0.610052 | 2.1:+32908032 | MS.gene90431:CDS |
| TGAGAGTAATATGCAGCTCA+GGG | 0.625890 | 2.1:+32909116 | MS.gene90431:CDS |
| AATCTTACACAGCCAACTTG+AGG | 0.626336 | 2.1:+32907968 | MS.gene90431:CDS |
| AGAATGAACTAAAGGCTAGG+TGG | 0.630663 | 2.1:+32907373 | None:intergenic |
| GAATATGCAATGCCTCAAGT+TGG | 0.634222 | 2.1:-32907980 | None:intergenic |
| GTGAACTGGCAGAACAGGCA+AGG | 0.635369 | 2.1:+32909342 | MS.gene90431:CDS |
| GACAGAATGAACTAAAGGCT+AGG | 0.636970 | 2.1:+32907370 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATAAATAAGTTATTTA+TGG | - | chr2.1:32907643-32907662 | None:intergenic | 10.0% |
| !! | AAAAAGATAAACTTGAATAT+TGG | + | chr2.1:32907572-32907591 | MS.gene90431:intron | 15.0% |
| !! | ATGATATGTAATTTATATTG+AGG | + | chr2.1:32907804-32907823 | MS.gene90431:intron | 15.0% |
| !! | TATAAATTACATATCATCAA+TGG | - | chr2.1:32907801-32907820 | None:intergenic | 15.0% |
| !!! | CTAAATTCATTCATTTTTTA+TGG | + | chr2.1:32908963-32908982 | MS.gene90431:intron | 15.0% |
| !!! | TACTTTTTATATTCTTTAAC+AGG | + | chr2.1:32908186-32908205 | MS.gene90431:intron | 15.0% |
| !! | AAGTAAATTAGAAATAACAG+TGG | - | chr2.1:32909548-32909567 | None:intergenic | 20.0% |
| !! | ACAAATAATTTATTAGTCAC+AGG | - | chr2.1:32909301-32909320 | None:intergenic | 20.0% |
| !! | AGAAGTTTCATTATTAAAAC+AGG | + | chr2.1:32908216-32908235 | MS.gene90431:CDS | 20.0% |
| !! | AGTAAAATATAAGACACATA+CGG | - | chr2.1:32907889-32907908 | None:intergenic | 20.0% |
| !! | CAAACCTTATTATATATGTA+TGG | + | chr2.1:32907710-32907729 | MS.gene90431:intron | 20.0% |
| !! | GAAATAACAACAGAATAAAT+AGG | - | chr2.1:32909215-32909234 | None:intergenic | 20.0% |
| !! | GTGAAATAGGTATTAATATT+TGG | + | chr2.1:32907753-32907772 | MS.gene90431:intron | 20.0% |
| !!! | ATTTTGATCAATTCAGTAAT+GGG | + | chr2.1:32909046-32909065 | MS.gene90431:intron | 20.0% |
| !!! | ATTTTGTCTAAAGTTAATGA+GGG | - | chr2.1:32908565-32908584 | None:intergenic | 20.0% |
| !!! | TATTTTGATCAATTCAGTAA+TGG | + | chr2.1:32909045-32909064 | MS.gene90431:intron | 20.0% |
| !!! | TGTCTTATATTTTACTGTAT+TGG | + | chr2.1:32907893-32907912 | MS.gene90431:intron | 20.0% |
| !!! | TGTTTACAATTTCTTTTGAA+CGG | - | chr2.1:32908106-32908125 | None:intergenic | 20.0% |
| ! | AGTTGAGTATGTAAATGAAA+TGG | - | chr2.1:32907925-32907944 | None:intergenic | 25.0% |
| ! | ATTATCAGAATAACTGTTAC+TGG | - | chr2.1:32908705-32908724 | None:intergenic | 25.0% |
| ! | GCTTTGACAAAATAATTTCT+AGG | + | chr2.1:32909071-32909090 | MS.gene90431:intron | 25.0% |
| ! | TAAATTAGAAATAACAGTGG+AGG | - | chr2.1:32909545-32909564 | None:intergenic | 25.0% |
| ! | TATTGAGGATCGTTAATATA+TGG | + | chr2.1:32907819-32907838 | MS.gene90431:intron | 25.0% |
| ! | TGAATCACTAAAAACAGAAA+AGG | + | chr2.1:32909436-32909455 | MS.gene90431:CDS | 25.0% |
| ! | TTGATCAAAATAACATCATC+TGG | - | chr2.1:32909037-32909056 | None:intergenic | 25.0% |
| ! | TTGTTATATTTCGTATAACG+TGG | + | chr2.1:32908283-32908302 | MS.gene90431:intron | 25.0% |
| ! | TTTAATCAAAAACCCTCAAA+TGG | + | chr2.1:32908439-32908458 | MS.gene90431:intron | 25.0% |
| !! | ACAAAATAATTTCTAGGTCA+GGG | + | chr2.1:32909077-32909096 | MS.gene90431:intron | 25.0% |
| !! | AGAAAATAAGCACAATTTTG+AGG | + | chr2.1:32909140-32909159 | MS.gene90431:CDS | 25.0% |
| !! | TGAATTTAGTTCCTGAAAAT+AGG | - | chr2.1:32908952-32908971 | None:intergenic | 25.0% |
| !!! | GATTTTGTCTAAAGTTAATG+AGG | - | chr2.1:32908566-32908585 | None:intergenic | 25.0% |
| AAACTTTCTGATGATTCTGA+TGG | + | chr2.1:32908759-32908778 | MS.gene90431:intron | 30.0% | |
| AAGATTCTCTAGATTATCTC+TGG | - | chr2.1:32909372-32909391 | None:intergenic | 30.0% | |
| AAGGTGTAAAAATGTTGATG+CGG | + | chr2.1:32909595-32909614 | MS.gene90431:CDS | 30.0% | |
| ACAATTTGTCATACTAGAAG+TGG | + | chr2.1:32908605-32908624 | MS.gene90431:intron | 30.0% | |
| ATACGATGAAATAAATGAGC+AGG | + | chr2.1:32907446-32907465 | MS.gene90431:CDS | 30.0% | |
| ATCAATAACCTGAAGTTGTA+AGG | - | chr2.1:32908929-32908948 | None:intergenic | 30.0% | |
| ATTCAAATCCTTACAACTTC+AGG | + | chr2.1:32908918-32908937 | MS.gene90431:CDS | 30.0% | |
| CAATTTGTCATACTAGAAGT+GGG | + | chr2.1:32908606-32908625 | MS.gene90431:intron | 30.0% | |
| GAAAATAAGCACAACTACTT+AGG | - | chr2.1:32908659-32908678 | None:intergenic | 30.0% | |
| GAATGACATCAAACTTAAGT+TGG | + | chr2.1:32908307-32908326 | MS.gene90431:intron | 30.0% | |
| TGGGCCATACATATATAATA+AGG | - | chr2.1:32907717-32907736 | None:intergenic | 30.0% | |
| ! | AGGTTATTGATCCTATTTTC+AGG | + | chr2.1:32908938-32908957 | MS.gene90431:intron | 30.0% |
| ! | ATCATCTTAAGTTGCTTGAA+AGG | + | chr2.1:32909576-32909595 | MS.gene90431:intron | 30.0% |
| ! | GACAAAATAATTTCTAGGTC+AGG | + | chr2.1:32909076-32909095 | MS.gene90431:intron | 30.0% |
| ! | TTACAATTTCTTTTGAACGG+CGG | - | chr2.1:32908103-32908122 | None:intergenic | 30.0% |
| !!! | GTGATTCAATCTCTTTTTTC+TGG | - | chr2.1:32909424-32909443 | None:intergenic | 30.0% |
| AAAGGAACATCTCAATTGCA+AGG | + | chr2.1:32909454-32909473 | MS.gene90431:CDS | 35.0% | |
| AACCAAACACAATTAGCACT+TGG | - | chr2.1:32908735-32908754 | None:intergenic | 35.0% | |
| AACCAAGTGCTAATTGTGTT+TGG | + | chr2.1:32908730-32908749 | MS.gene90431:intron | 35.0% | |
| AAGAGAAAGAGAAAGTGAAC+TGG | + | chr2.1:32909394-32909413 | MS.gene90431:CDS | 35.0% | |
| AAGCACAACTACTTAGGTTT+AGG | - | chr2.1:32908653-32908672 | None:intergenic | 35.0% | |
| ACACCAATCCAAATTGTGTT+GGG | + | chr2.1:32908510-32908529 | MS.gene90431:intron | 35.0% | |
| ACATTGTGATTGGGTGAAAT+AGG | + | chr2.1:32907740-32907759 | MS.gene90431:intron | 35.0% | |
| AGAGAATATCAGCAACACAA+AGG | - | chr2.1:32908129-32908148 | None:intergenic | 35.0% | |
| CACCCAATCACAATGTATAT+GGG | - | chr2.1:32907736-32907755 | None:intergenic | 35.0% | |
| CATCTACCATACTTTCTTCT+GGG | + | chr2.1:32909185-32909204 | MS.gene90431:intron | 35.0% | |
| TAAAATCAACCCCAGATAAC+CGG | - | chr2.1:32908423-32908442 | None:intergenic | 35.0% | |
| TCACCCAATCACAATGTATA+TGG | - | chr2.1:32907737-32907756 | None:intergenic | 35.0% | |
| TCATCTACCATACTTTCTTC+TGG | + | chr2.1:32909184-32909203 | MS.gene90431:intron | 35.0% | |
| TGACGGTTTATAGTCAATCT+TGG | - | chr2.1:32908391-32908410 | None:intergenic | 35.0% | |
| TTGTTAGAAATTGCGTGAAC+TGG | + | chr2.1:32909328-32909347 | MS.gene90431:intron | 35.0% | |
| TTTACCTAATATTCCGTGCA+TGG | + | chr2.1:32907537-32907556 | MS.gene90431:intron | 35.0% | |
| ! | AGCTGGCTTATAAAATGACA+TGG | + | chr2.1:32907686-32907705 | MS.gene90431:intron | 35.0% |
| ! | CATCTGGAAACACTTTTACT+AGG | - | chr2.1:32909021-32909040 | None:intergenic | 35.0% |
| ! | CGATAGATCTAGGATATGAT+CGG | - | chr2.1:32908468-32908487 | None:intergenic | 35.0% |
| ! | GATAGTTCACAACGTTTTGA+AGG | - | chr2.1:32908079-32908098 | None:intergenic | 35.0% |
| ! | TCTCATTTTGTCCTGTTTTC+TGG | + | chr2.1:32908339-32908358 | MS.gene90431:intron | 35.0% |
| !! | TGAGGCATTGCATATTCAAT+GGG | + | chr2.1:32907986-32908005 | MS.gene90431:CDS | 35.0% |
| !! | TTGAGGCATTGCATATTCAA+TGG | + | chr2.1:32907985-32908004 | MS.gene90431:CDS | 35.0% |
| !!! | TGATTCTGATGGTTTTGAAG+TGG | + | chr2.1:32908770-32908789 | MS.gene90431:intron | 35.0% |
| AAAAACTCGAGCCAGAAAAC+AGG | - | chr2.1:32908353-32908372 | None:intergenic | 40.0% | |
| AAATTGTGTTGGGTCTTTGC+AGG | + | chr2.1:32908520-32908539 | MS.gene90431:intron | 40.0% | |
| AATCTTACACAGCCAACTTG+AGG | + | chr2.1:32907968-32907987 | MS.gene90431:CDS | 40.0% | |
| ACACTTCTCATATCTCAAGC+TGG | + | chr2.1:32907669-32907688 | MS.gene90431:intron | 40.0% | |
| ACCCTAAAAACCGGTTATCT+GGG | + | chr2.1:32908410-32908429 | MS.gene90431:intron | 40.0% | |
| AGAAAACCTCATCTCAGACA+CGG | + | chr2.1:32909271-32909290 | MS.gene90431:intron | 40.0% | |
| AGACCCAACACAATTTGGAT+TGG | - | chr2.1:32908516-32908535 | None:intergenic | 40.0% | |
| CACACCAATCCAAATTGTGT+TGG | + | chr2.1:32908509-32908528 | MS.gene90431:intron | 40.0% | |
| CATCAATGGTTATCCCTTCA+TGG | - | chr2.1:32907787-32907806 | None:intergenic | 40.0% | |
| GAAAGAGAAAGTGAACTGGA+AGG | + | chr2.1:32909398-32909417 | MS.gene90431:CDS | 40.0% | |
| GAATATGCAATGCCTCAAGT+TGG | - | chr2.1:32907983-32908002 | None:intergenic | 40.0% | |
| GGCCCATATACATTGTGATT+GGG | + | chr2.1:32907731-32907750 | MS.gene90431:intron | 40.0% | |
| GTGGATGATACGATAGATCT+AGG | - | chr2.1:32908478-32908497 | None:intergenic | 40.0% | |
| GTGTAAAAATGTTGATGCGG+AGG | + | chr2.1:32909598-32909617 | MS.gene90431:CDS | 40.0% | |
| GTTATCCCTTCATGGCATAT+GGG | - | chr2.1:32907779-32907798 | None:intergenic | 40.0% | |
| TAAACCGTCACCCTAAAAAC+CGG | + | chr2.1:32908401-32908420 | MS.gene90431:intron | 40.0% | |
| TAATATTCCGTGCATGGAGA+AGG | + | chr2.1:32907543-32907562 | MS.gene90431:intron | 40.0% | |
| TCAAGCTACAGAGAATCATG+AGG | - | chr2.1:32908811-32908830 | None:intergenic | 40.0% | |
| TCTCAATTGCAAGGTTTCAG+AGG | + | chr2.1:32909463-32909482 | MS.gene90431:CDS | 40.0% | |
| TGAGAGTAATATGCAGCTCA+GGG | + | chr2.1:32909116-32909135 | MS.gene90431:CDS | 40.0% | |
| TGCAAAGACCCAACACAATT+TGG | - | chr2.1:32908521-32908540 | None:intergenic | 40.0% | |
| TGGCCCATATACATTGTGAT+TGG | + | chr2.1:32907730-32907749 | MS.gene90431:intron | 40.0% | |
| TGGTATTTCACCTGGAAGTA+GGG | + | chr2.1:32908031-32908050 | MS.gene90431:CDS | 40.0% | |
| TTCTCCATGCACGGAATATT+AGG | - | chr2.1:32907544-32907563 | None:intergenic | 40.0% | |
| ! | ATATGATCGGATGCCATTTG+AGG | - | chr2.1:32908455-32908474 | None:intergenic | 40.0% |
| ! | TATGATCGGATGCCATTTGA+GGG | - | chr2.1:32908454-32908473 | None:intergenic | 40.0% |
| ! | TTCTTTTCCTTCTCCATGCA+CGG | - | chr2.1:32907553-32907572 | None:intergenic | 40.0% |
| !! | ACACAATTTGGATTGGTGTG+TGG | - | chr2.1:32908509-32908528 | None:intergenic | 40.0% |
| !! | GCACAATTTTGAGGAATGTC+AGG | + | chr2.1:32909149-32909168 | MS.gene90431:CDS | 40.0% |
| !! | GCATATTCAATGGGCTGAAA+AGG | + | chr2.1:32907995-32908014 | MS.gene90431:CDS | 40.0% |
| !!! | ATAACCGGTTTTTAGGGTGA+CGG | - | chr2.1:32908408-32908427 | None:intergenic | 40.0% |
| AAAGCTGCGATTACAGTCAC+AGG | + | chr2.1:32908240-32908259 | MS.gene90431:CDS | 45.0% | |
| AATGTATCACCCCTACTTCC+AGG | - | chr2.1:32908044-32908063 | None:intergenic | 45.0% | |
| ATTTGGCCCATATGCCATGA+AGG | + | chr2.1:32907770-32907789 | MS.gene90431:intron | 45.0% | |
| CACCCTAAAAACCGGTTATC+TGG | + | chr2.1:32908409-32908428 | MS.gene90431:intron | 45.0% | |
| CCCTAAAAACCGGTTATCTG+GGG | + | chr2.1:32908411-32908430 | MS.gene90431:intron | 45.0% | |
| CTGGTATTTCACCTGGAAGT+AGG | + | chr2.1:32908030-32908049 | MS.gene90431:CDS | 45.0% | |
| GGAAGACCCAGAAGAAAGTA+TGG | - | chr2.1:32909194-32909213 | None:intergenic | 45.0% | |
| GGAAGTAGGGGTGATACATT+TGG | + | chr2.1:32908044-32908063 | MS.gene90431:CDS | 45.0% | |
| GGTATTTCACCTGGAAGTAG+GGG | + | chr2.1:32908032-32908051 | MS.gene90431:CDS | 45.0% | |
| GGTTATCCCTTCATGGCATA+TGG | - | chr2.1:32907780-32907799 | None:intergenic | 45.0% | |
| GTGAGAGTAATATGCAGCTC+AGG | + | chr2.1:32909115-32909134 | MS.gene90431:CDS | 45.0% | |
| TTGGTGTGTGGATAAGATGG+TGG | - | chr2.1:32908497-32908516 | None:intergenic | 45.0% | |
| TTTGGCCCATATGCCATGAA+GGG | + | chr2.1:32907771-32907790 | MS.gene90431:intron | 45.0% | |
| ! | GGATTGGTGTGTGGATAAGA+TGG | - | chr2.1:32908500-32908519 | None:intergenic | 45.0% |
| !! | ACCCCAGATAACCGGTTTTT+AGG | - | chr2.1:32908415-32908434 | None:intergenic | 45.0% |
| !! | CCCCAGATAACCGGTTTTTA+GGG | - | chr2.1:32908414-32908433 | None:intergenic | 45.0% |
| !! | GGTGATACATTTGGTGATGC+TGG | + | chr2.1:32908053-32908072 | MS.gene90431:CDS | 45.0% |
| ACTAAAGGCTAGGTGGGAAG+AGG | + | chr2.1:32907380-32907399 | MS.gene90431:CDS | 50.0% | |
| ATTGCGTGAACTGGCAGAAC+AGG | + | chr2.1:32909337-32909356 | MS.gene90431:CDS | 50.0% | |
| TGGGTCTTTGCAGGCGTATT+GGG | + | chr2.1:32908529-32908548 | MS.gene90431:intron | 50.0% | |
| TTGGGTCTTTGCAGGCGTAT+TGG | + | chr2.1:32908528-32908547 | MS.gene90431:intron | 50.0% | |
| ! | AGTGCTGCTGGTATTTCACC+TGG | + | chr2.1:32908023-32908042 | MS.gene90431:CDS | 50.0% |
| GGGTCTTTGCAGGCGTATTG+GGG | + | chr2.1:32908530-32908549 | MS.gene90431:intron | 55.0% | |
| GTGAACTGGCAGAACAGGCA+AGG | + | chr2.1:32909342-32909361 | MS.gene90431:CDS | 55.0% | |
| ! | GAAAAGGAGCGTAGTGCTGC+TGG | + | chr2.1:32908011-32908030 | MS.gene90431:CDS | 55.0% |
| ! | GGAGAACCGTGTCTGAGATG+AGG | - | chr2.1:32909280-32909299 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 32907375 | 32909658 | 32907375 | ID=MS.gene90431 |
| chr2.1 | mRNA | 32907375 | 32909658 | 32907375 | ID=MS.gene90431.t1;Parent=MS.gene90431 |
| chr2.1 | exon | 32907375 | 32907467 | 32907375 | ID=MS.gene90431.t1.exon1;Parent=MS.gene90431.t1 |
| chr2.1 | CDS | 32907375 | 32907467 | 32907375 | ID=cds.MS.gene90431.t1;Parent=MS.gene90431.t1 |
| chr2.1 | exon | 32907963 | 32908118 | 32907963 | ID=MS.gene90431.t1.exon2;Parent=MS.gene90431.t1 |
| chr2.1 | CDS | 32907963 | 32908118 | 32907963 | ID=cds.MS.gene90431.t1;Parent=MS.gene90431.t1 |
| chr2.1 | exon | 32908208 | 32908261 | 32908208 | ID=MS.gene90431.t1.exon3;Parent=MS.gene90431.t1 |
| chr2.1 | CDS | 32908208 | 32908261 | 32908208 | ID=cds.MS.gene90431.t1;Parent=MS.gene90431.t1 |
| chr2.1 | exon | 32908826 | 32908939 | 32908826 | ID=MS.gene90431.t1.exon4;Parent=MS.gene90431.t1 |
| chr2.1 | CDS | 32908826 | 32908939 | 32908826 | ID=cds.MS.gene90431.t1;Parent=MS.gene90431.t1 |
| chr2.1 | exon | 32909093 | 32909170 | 32909093 | ID=MS.gene90431.t1.exon5;Parent=MS.gene90431.t1 |
| chr2.1 | CDS | 32909093 | 32909170 | 32909093 | ID=cds.MS.gene90431.t1;Parent=MS.gene90431.t1 |
| chr2.1 | exon | 32909335 | 32909484 | 32909335 | ID=MS.gene90431.t1.exon6;Parent=MS.gene90431.t1 |
| chr2.1 | CDS | 32909335 | 32909484 | 32909335 | ID=cds.MS.gene90431.t1;Parent=MS.gene90431.t1 |
| chr2.1 | exon | 32909587 | 32909658 | 32909587 | ID=MS.gene90431.t1.exon7;Parent=MS.gene90431.t1 |
| chr2.1 | CDS | 32909587 | 32909658 | 32909587 | ID=cds.MS.gene90431.t1;Parent=MS.gene90431.t1 |
| Gene Sequence |
| Protein sequence |
