Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65291.t1 | XP_003594781.2 | 95.5 | 872 | 37 | 1 | 1 | 872 | 16 | 885 | 0.00E+00 | 1364.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65291.t1 | Q5SP90 | 36.1 | 643 | 372 | 13 | 1 | 620 | 7 | 633 | 7.7e-110 | 399.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65291.t1 | G7IG10 | 95.5 | 872 | 37 | 1 | 1 | 872 | 16 | 885 | 0.0e+00 | 1364.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene65291 | 0.807617 | 4.63E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene65291 | 0.875798 | 2.32E-68 | -1.69E-46 |
| MS.gene049254 | MS.gene65291 | 0.814903 | 1.22E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene65291 | 0.802465 | 5.54E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene65291 | 0.800448 | 1.43E-48 | -1.69E-46 |
| MS.gene049435 | MS.gene65291 | 0.810477 | 1.13E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene65291 | 0.835929 | 1.26E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene65291 | 0.820743 | 5.84E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene65291 | 0.807629 | 4.61E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene65291 | 0.835804 | 1.36E-56 | -1.69E-46 |
| MS.gene050605 | MS.gene65291 | 0.822066 | 2.89E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene65291 | 0.802309 | 5.96E-49 | -1.69E-46 |
| MS.gene050737 | MS.gene65291 | 0.800804 | 1.21E-48 | -1.69E-46 |
| MS.gene050759 | MS.gene65291 | 0.833299 | 5.78E-56 | -1.69E-46 |
| MS.gene050941 | MS.gene65291 | 0.830057 | 3.64E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene65291 | 0.800645 | 1.31E-48 | -1.69E-46 |
| MS.gene050962 | MS.gene65291 | 0.823516 | 1.33E-53 | -1.69E-46 |
| MS.gene051181 | MS.gene65291 | 0.806312 | 8.74E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene65291 | 0.803844 | 2.87E-49 | -1.69E-46 |
| MS.gene051210 | MS.gene65291 | 0.827265 | 1.72E-54 | -1.69E-46 |
| MS.gene051368 | MS.gene65291 | 0.807282 | 5.45E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene65291 | 0.847605 | 1.04E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene65291 | 0.80367 | 3.12E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene65291 | 0.822945 | 1.81E-53 | -1.69E-46 |
| MS.gene052012 | MS.gene65291 | 0.825615 | 4.25E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene65291 | 0.822687 | 2.07E-53 | -1.69E-46 |
| MS.gene052674 | MS.gene65291 | 0.808039 | 3.77E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene65291 | 0.807627 | 4.61E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene65291 | 0.815882 | 7.36E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene65291 | 0.828839 | 7.19E-55 | -1.69E-46 |
| MS.gene052867 | MS.gene65291 | 0.808287 | 3.34E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene65291 | 0.824409 | 8.20E-54 | -1.69E-46 |
| MS.gene052954 | MS.gene65291 | 0.803431 | 3.50E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene65291 | 0.813746 | 2.19E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene65291 | 0.849539 | 3.03E-60 | -1.69E-46 |
| MS.gene053166 | MS.gene65291 | 0.817484 | 3.22E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene65291 | 0.804914 | 1.72E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene65291 | 0.833248 | 5.95E-56 | -1.69E-46 |
| MS.gene054236 | MS.gene65291 | 0.838489 | 2.79E-57 | -1.69E-46 |
| MS.gene054479 | MS.gene65291 | 0.8593 | 4.55E-63 | -1.69E-46 |
| MS.gene054651 | MS.gene65291 | 0.817297 | 3.55E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene65291 | 0.811474 | 6.87E-51 | -1.69E-46 |
| MS.gene054994 | MS.gene65291 | 0.818606 | 1.80E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene65291 | 0.857749 | 1.32E-62 | -1.69E-46 |
| MS.gene055222 | MS.gene65291 | 0.833163 | 6.24E-56 | -1.69E-46 |
| MS.gene055227 | MS.gene65291 | 0.811281 | 7.57E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene65291 | 0.807926 | 3.98E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene65291 | 0.833458 | 5.27E-56 | -1.69E-46 |
| MS.gene055701 | MS.gene65291 | 0.843419 | 1.42E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene65291 | 0.851505 | 8.49E-61 | -1.69E-46 |
| MS.gene055926 | MS.gene65291 | 0.835227 | 1.90E-56 | -1.69E-46 |
| MS.gene056162 | MS.gene65291 | 0.803729 | 3.03E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene65291 | 0.802288 | 6.02E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene65291 | 0.809293 | 2.03E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene65291 | 0.804528 | 2.07E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene65291 | 0.804875 | 1.75E-49 | -1.69E-46 |
| MS.gene056873 | MS.gene65291 | 0.80241 | 5.68E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene65291 | 0.822349 | 2.48E-53 | -1.69E-46 |
| MS.gene057598 | MS.gene65291 | 0.81605 | 6.75E-52 | -1.69E-46 |
| MS.gene05761 | MS.gene65291 | 0.808783 | 2.61E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene65291 | 0.80599 | 1.02E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene65291 | 0.824886 | 6.33E-54 | -1.69E-46 |
| MS.gene057869 | MS.gene65291 | 0.849876 | 2.44E-60 | -1.69E-46 |
| MS.gene057915 | MS.gene65291 | 0.815576 | 8.61E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene65291 | 0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene65291 | 0.822935 | 1.82E-53 | -1.69E-46 |
| MS.gene058146 | MS.gene65291 | 0.856248 | 3.66E-62 | -1.69E-46 |
| MS.gene058214 | MS.gene65291 | 0.818759 | 1.66E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene65291 | 0.831945 | 1.25E-55 | -1.69E-46 |
| MS.gene058427 | MS.gene65291 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene058548 | MS.gene65291 | 0.83392 | 4.04E-56 | -1.69E-46 |
| MS.gene058595 | MS.gene65291 | 0.83803 | 3.66E-57 | -1.69E-46 |
| MS.gene058783 | MS.gene65291 | 0.816536 | 5.26E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene65291 | 0.86703 | 1.85E-65 | -1.69E-46 |
| MS.gene059161 | MS.gene65291 | 0.807865 | 4.10E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene65291 | 0.846558 | 2.01E-59 | -1.69E-46 |
| MS.gene059550 | MS.gene65291 | 0.80233 | 5.90E-49 | -1.69E-46 |
| MS.gene05973 | MS.gene65291 | 0.825022 | 5.88E-54 | -1.69E-46 |
| MS.gene05979 | MS.gene65291 | 0.805191 | 1.50E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene65291 | 0.804377 | 2.22E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene65291 | 0.871311 | 7.53E-67 | -1.69E-46 |
| MS.gene060167 | MS.gene65291 | 0.813048 | 3.12E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene65291 | 0.815238 | 1.02E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene65291 | 0.84384 | 1.09E-58 | -1.69E-46 |
| MS.gene060683 | MS.gene65291 | 0.833754 | 4.45E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene65291 | 0.833462 | 5.26E-56 | -1.69E-46 |
| MS.gene060802 | MS.gene65291 | 0.819902 | 9.10E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene65291 | 0.828821 | 7.27E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene65291 | 0.821324 | 4.29E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene65291 | 0.809187 | 2.14E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene65291 | 0.846339 | 2.31E-59 | -1.69E-46 |
| MS.gene06121 | MS.gene65291 | 0.80022 | 1.60E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65291.t1 | MTR_2g034560 | 97.706 | 872 | 18 | 1 | 1 | 872 | 16 | 885 | 0.0 | 1753 |
| MS.gene65291.t1 | MTR_2g034560 | 98.871 | 620 | 7 | 0 | 1 | 620 | 16 | 635 | 0.0 | 1266 |
| MS.gene65291.t1 | MTR_4g121890 | 72.654 | 874 | 229 | 6 | 1 | 872 | 16 | 881 | 0.0 | 1265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65291.t1 | AT3G06670 | 65.183 | 876 | 275 | 10 | 1 | 872 | 16 | 865 | 0.0 | 1103 |
| MS.gene65291.t1 | AT3G06670 | 63.657 | 897 | 275 | 11 | 1 | 872 | 16 | 886 | 0.0 | 1090 |
| MS.gene65291.t1 | AT5G49390 | 52.752 | 654 | 284 | 9 | 1 | 648 | 12 | 646 | 0.0 | 661 |
| MS.gene65291.t1 | AT5G49390 | 59.006 | 322 | 128 | 2 | 1 | 321 | 12 | 330 | 2.29e-130 | 395 |
Find 149 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAATGGTAACAGATTT+TGG | 0.089946 | 2.2:+54499585 | MS.gene65291:CDS |
| GCTAGTGAAATTTGAGAATT+TGG | 0.119784 | 2.2:+54501754 | MS.gene65291:CDS |
| CTGCGAGCCATTCAGATTTA+AGG | 0.133273 | 2.2:+54502205 | MS.gene65291:CDS |
| GCTTTGTCCCACTGTGATTT+TGG | 0.203108 | 2.2:-54500048 | None:intergenic |
| TCCTTTGCACGTTGCAAATA+TGG | 0.236602 | 2.2:-54493068 | None:intergenic |
| GACAAGAAGCTTGTGCTTAC+TGG | 0.241344 | 2.2:+54498905 | MS.gene65291:CDS |
| TTGTGAGGATTTGGAAAATA+TGG | 0.251673 | 2.2:+54495176 | MS.gene65291:CDS |
| GGCCATCTCTGGCGAGGATT+TGG | 0.255382 | 2.2:-54502809 | None:intergenic |
| ATACATCAAACATATAAAAT+TGG | 0.264422 | 2.2:+54495738 | MS.gene65291:CDS |
| TTAGACTCATCTACATTGTC+TGG | 0.266676 | 2.2:+54499651 | MS.gene65291:CDS |
| CATATATAGTTGATTCGTTC+TGG | 0.267081 | 2.2:+54501726 | MS.gene65291:CDS |
| ACATCATCGTGAGTTCTTAA+AGG | 0.274131 | 2.2:+54495553 | MS.gene65291:CDS |
| ATTCAGAGTTTGTGAGGATT+TGG | 0.277374 | 2.2:+54495167 | MS.gene65291:CDS |
| GCTATCTCAGTGGCATATTC+TGG | 0.281183 | 2.2:-54492900 | None:intergenic |
| TCGCCAGAGATGGCCGTTAA+AGG | 0.294556 | 2.2:+54502817 | MS.gene65291:CDS |
| CAGGAAGGAGTCACACTTCT+TGG | 0.295504 | 2.2:+54499095 | MS.gene65291:CDS |
| GAAGCTTCTGGCTGCTTCCT+TGG | 0.298496 | 2.2:-54502376 | None:intergenic |
| TCATCCTCTTCAGAAGCTTC+TGG | 0.313703 | 2.2:-54502388 | None:intergenic |
| CAACAAGGAAATACTTTATT+CGG | 0.325362 | 2.2:-54500129 | None:intergenic |
| AAGATGACAATGCATTTATT+CGG | 0.334459 | 2.2:+54496108 | MS.gene65291:CDS |
| GTTTAGTGATGAGTTTATAA+TGG | 0.335598 | 2.2:+54495365 | MS.gene65291:CDS |
| CAGTCCGAGGTCTGGTGGAC+TGG | 0.338690 | 2.2:+54502309 | MS.gene65291:intron |
| GTTCATTGTATGTAGAGATA+TGG | 0.341344 | 2.2:+54498835 | MS.gene65291:intron |
| AACGCTTCCATTGATTCTTA+AGG | 0.353098 | 2.2:+54493804 | MS.gene65291:CDS |
| ATCTGGTTGTTGGTGCTATT+CGG | 0.354021 | 2.2:+54500292 | MS.gene65291:CDS |
| CTTTAGATACAATTATTTCA+TGG | 0.357717 | 2.2:+54492871 | MS.gene65291:intron |
| TCGAATGGCACTACAGATAA+TGG | 0.358374 | 2.2:+54502751 | MS.gene65291:CDS |
| AGGAAATACTTTATTCGGTA+TGG | 0.362237 | 2.2:-54500124 | None:intergenic |
| GCCATCTCTGGCGAGGATTT+GGG | 0.366834 | 2.2:-54502808 | None:intergenic |
| AAATGGGACGACCAGGGCAC+TGG | 0.368782 | 2.2:+54492138 | MS.gene65291:CDS |
| TGTCACTGTTGATTATTTAG+AGG | 0.386164 | 2.2:+54492164 | MS.gene65291:CDS |
| AGATGACAATGCATTTATTC+GGG | 0.397204 | 2.2:+54496109 | MS.gene65291:CDS |
| TGCGAAGAATCTCAAGAAAC+TGG | 0.399221 | 2.2:-54499623 | None:intergenic |
| CATATGTTCAATAGAATCTC+TGG | 0.401225 | 2.2:-54500070 | None:intergenic |
| GAGTTTATAATGGACATAAT+TGG | 0.403584 | 2.2:+54495375 | MS.gene65291:CDS |
| CTTGTGTTCAACTTTGAGCC+AGG | 0.406621 | 2.2:+54502531 | MS.gene65291:CDS |
| GTAGACGTCTTCGTTGCTAA+TGG | 0.435341 | 2.2:+54501320 | MS.gene65291:CDS |
| GTCTGAATGATGATGGGAAA+TGG | 0.435675 | 2.2:+54492121 | MS.gene65291:CDS |
| ATCTACATTGTCTGGGGCAC+AGG | 0.437317 | 2.2:+54499659 | MS.gene65291:CDS |
| GAACCTTTAACGGCCATCTC+TGG | 0.438703 | 2.2:-54502820 | None:intergenic |
| AAAGTTGCCTTTGAAGGATA+AGG | 0.439053 | 2.2:+54502441 | MS.gene65291:CDS |
| ACATAGGATCGGAGAAGATT+AGG | 0.439062 | 2.2:-54499065 | None:intergenic |
| ATCCAAACCTTAAGAATCAA+TGG | 0.439199 | 2.2:-54493811 | None:intergenic |
| AGTGGTGATCAGACAATTGA+TGG | 0.447983 | 2.2:+54502592 | MS.gene65291:CDS |
| TTTGATTCAGGAGAGGTAGT+TGG | 0.450221 | 2.2:-54496155 | None:intergenic |
| TCTGGCTGCTTCCTTGGTGG+TGG | 0.450716 | 2.2:-54502370 | None:intergenic |
| ATATATAGTTGATTCGTTCT+GGG | 0.461272 | 2.2:+54501727 | MS.gene65291:CDS |
| GTCTACCGTCTGAATGATGA+TGG | 0.468529 | 2.2:+54492114 | MS.gene65291:CDS |
| TAGACTCATCTACATTGTCT+GGG | 0.473295 | 2.2:+54499652 | MS.gene65291:CDS |
| TGTGGTCGAGAGTGGCATTA+CGG | 0.473303 | 2.2:+54494242 | MS.gene65291:CDS |
| GGGTGGCGAGGAACATTCAC+TGG | 0.474514 | 2.2:+54502780 | MS.gene65291:CDS |
| ATGGCTCGCAGCAGCTCCAT+TGG | 0.477439 | 2.2:-54502193 | None:intergenic |
| CAGTGTAAACAGTGAGTTGA+GGG | 0.479328 | 2.2:+54493759 | MS.gene65291:CDS |
| CACTACAGATAATGGACAGT+TGG | 0.485197 | 2.2:+54502759 | MS.gene65291:CDS |
| AATGGGACGACCAGGGCACT+GGG | 0.489252 | 2.2:+54492139 | MS.gene65291:CDS |
| CAGTGACATGCCCAGTGCCC+TGG | 0.492399 | 2.2:-54492149 | None:intergenic |
| AAGTATACCTTAAATCTGAA+TGG | 0.493670 | 2.2:-54502212 | None:intergenic |
| TTGGATAATGATGGGACAAA+AGG | 0.494132 | 2.2:+54501919 | MS.gene65291:CDS |
| TTGCAGTGTTTGGATAATGA+TGG | 0.496771 | 2.2:+54501910 | MS.gene65291:intron |
| TGAAGAGGATGAAGGGGCAT+TGG | 0.499375 | 2.2:+54502399 | MS.gene65291:CDS |
| TGATGGGAAATGGGACGACC+AGG | 0.501263 | 2.2:+54492131 | MS.gene65291:CDS |
| AATGCAGCGATCAGAAGAGC+TGG | 0.501408 | 2.2:+54492589 | MS.gene65291:intron |
| ACAAGAAGCTTGTGCTTACT+GGG | 0.502874 | 2.2:+54498906 | MS.gene65291:CDS |
| TCTTACCAGGTAGTACAGCC+TGG | 0.504519 | 2.2:-54502549 | None:intergenic |
| ACCATATTTGCAACGTGCAA+AGG | 0.505363 | 2.2:+54493067 | MS.gene65291:CDS |
| ATCGGAGAAGATTAGGATCC+TGG | 0.505731 | 2.2:-54499058 | None:intergenic |
| GCTTCTGGCTGCTTCCTTGG+TGG | 0.507961 | 2.2:-54502373 | None:intergenic |
| AAGGGGCATTGGAGTTGCTC+GGG | 0.510108 | 2.2:+54502410 | MS.gene65291:CDS |
| GGAAATACTTTATTCGGTAT+GGG | 0.512152 | 2.2:-54500123 | None:intergenic |
| GAAGCTTCTGAAGAGGATGA+AGG | 0.512916 | 2.2:+54502391 | MS.gene65291:CDS |
| TGTTGAGCATGAGGAACCTC+TGG | 0.513659 | 2.2:-54495533 | None:intergenic |
| CTGGTGGATGCTCTTACATA+TGG | 0.513775 | 2.2:+54492940 | MS.gene65291:CDS |
| GAAACGAAAGTTGCCTTTGA+AGG | 0.515256 | 2.2:+54502435 | MS.gene65291:CDS |
| GAAGGGGCATTGGAGTTGCT+CGG | 0.520507 | 2.2:+54502409 | MS.gene65291:CDS |
| TCTATTTCACGTCATCAGAA+AGG | 0.523021 | 2.2:+54502135 | MS.gene65291:CDS |
| ATGTAGAGATATGGTAAATG+AGG | 0.525319 | 2.2:+54498844 | MS.gene65291:intron |
| AGCGTTGATAATTCAACTGC+AGG | 0.526021 | 2.2:-54493787 | None:intergenic |
| CCGATCCTATGTGGTTCGAC+AGG | 0.526655 | 2.2:+54499076 | MS.gene65291:CDS |
| CAGCCGCAGGTGTTATCCAA+TGG | 0.529581 | 2.2:+54502177 | MS.gene65291:CDS |
| GATCCATCAGAGAAGTTCCT+AGG | 0.530336 | 2.2:-54502730 | None:intergenic |
| ACTACAGATAATGGACAGTT+GGG | 0.531174 | 2.2:+54502760 | MS.gene65291:CDS |
| TGATCTTCGAAGACGAATTG+AGG | 0.531365 | 2.2:+54501954 | MS.gene65291:CDS |
| ACTGAAAGTAAAATATGAGC+AGG | 0.532728 | 2.2:+54501790 | MS.gene65291:CDS |
| TCTCATTCTCTTCTTGAACC+AGG | 0.536788 | 2.2:+54499040 | MS.gene65291:CDS |
| CTATTTCACGTCATCAGAAA+GGG | 0.538741 | 2.2:+54502136 | MS.gene65291:CDS |
| GTCTTCACTTTGCAAGACAT+CGG | 0.538851 | 2.2:-54498885 | None:intergenic |
| TCCTATGTGGTTCGACAGGA+AGG | 0.542415 | 2.2:+54499080 | MS.gene65291:CDS |
| TAATGCACAGGTTAGAGGAA+TGG | 0.545419 | 2.2:+54499572 | MS.gene65291:intron |
| ACCCAAATCCTCGCCAGAGA+TGG | 0.545536 | 2.2:+54502807 | MS.gene65291:CDS |
| TCTGAATGATGATGGGAAAT+GGG | 0.547136 | 2.2:+54492122 | MS.gene65291:CDS |
| AAGCTTCTGAAGAGGATGAA+GGG | 0.547806 | 2.2:+54502392 | MS.gene65291:CDS |
| TTGAGCCAGGCTGTACTACC+TGG | 0.549927 | 2.2:+54502544 | MS.gene65291:CDS |
| AGTCACACTTCTTGGACTGT+TGG | 0.551695 | 2.2:+54499103 | MS.gene65291:CDS |
| AAGACTACTTTAATGAGGAC+AGG | 0.553279 | 2.2:+54502001 | MS.gene65291:CDS |
| CATATGTAAGAGCATCCACC+AGG | 0.555331 | 2.2:-54492939 | None:intergenic |
| AACTTCTCTGATGGATCGAA+TGG | 0.555707 | 2.2:+54502736 | MS.gene65291:CDS |
| GCTTACATGACGAGAGAGAA+TGG | 0.557195 | 2.2:-54500325 | None:intergenic |
| ACACCTAGGAACTTCTCTGA+TGG | 0.557276 | 2.2:+54502727 | MS.gene65291:CDS |
| TTATTCGGGAGTTCTTTGCT+AGG | 0.557818 | 2.2:+54496123 | MS.gene65291:CDS |
| TGTAGAGATATGGTAAATGA+GGG | 0.568011 | 2.2:+54498845 | MS.gene65291:intron |
| TCTGTCACCTTATCCTTCAA+AGG | 0.573333 | 2.2:-54502448 | None:intergenic |
| ACTGCAATCAACGATCATAG+TGG | 0.575561 | 2.2:+54502574 | MS.gene65291:CDS |
| GATATTTACCGAAAACAAGA+AGG | 0.575917 | 2.2:+54492674 | MS.gene65291:CDS |
| TGAAGTATTCAGAGTTTGTG+AGG | 0.580756 | 2.2:+54495161 | MS.gene65291:CDS |
| AGTCGAAGCTGCTGTACCAT+CGG | 0.580806 | 2.2:-54498252 | None:intergenic |
| TATTGAATTTCAGCGTGTCA+AGG | 0.584586 | 2.2:+54492092 | None:intergenic |
| AGCTTCTGAAGAGGATGAAG+GGG | 0.586384 | 2.2:+54502393 | MS.gene65291:CDS |
| CGTCTACAAGTGGTTTGAGA+AGG | 0.587407 | 2.2:-54501304 | None:intergenic |
| GCACTAAGCTTTCAAGAACC+TGG | 0.588094 | 2.2:+54492921 | MS.gene65291:CDS |
| CTGGCTCAAAGTTGAACACA+AGG | 0.592116 | 2.2:-54502530 | None:intergenic |
| TAATGGACAGTTGGGTGGCG+AGG | 0.593874 | 2.2:+54502768 | MS.gene65291:CDS |
| GCGTGCTTTAGAGAAAGAAG+AGG | 0.597626 | 2.2:+54501978 | MS.gene65291:CDS |
| AAATATGGATGGCCTTCACA+TGG | 0.603238 | 2.2:+54495191 | MS.gene65291:CDS |
| TCACAGACTGTGGTCGAGAG+TGG | 0.609056 | 2.2:+54494234 | MS.gene65291:intron |
| TGCAGTGTTTGGATAATGAT+GGG | 0.611909 | 2.2:+54501911 | MS.gene65291:intron |
| ATTTCCCATCATCATTCAGA+CGG | 0.612029 | 2.2:-54492119 | None:intergenic |
| AGAGGAAGACTACTTTAATG+AGG | 0.614213 | 2.2:+54501996 | MS.gene65291:CDS |
| ATGCAGCGATCAGAAGAGCT+GGG | 0.617284 | 2.2:+54492590 | MS.gene65291:intron |
| GCAGCCAGAAGCTTCTGAAG+AGG | 0.617982 | 2.2:+54502384 | MS.gene65291:CDS |
| TCACGATGATGTTGAGCATG+AGG | 0.622085 | 2.2:-54495542 | None:intergenic |
| AGACTCATCTACATTGTCTG+GGG | 0.623551 | 2.2:+54499653 | MS.gene65291:CDS |
| GCAACGAAGACGTCTACAAG+TGG | 0.625269 | 2.2:-54501314 | None:intergenic |
| TAATCTTCTCCGATCCTATG+TGG | 0.631233 | 2.2:+54499067 | MS.gene65291:CDS |
| ACAGATAATGGACAGTTGGG+TGG | 0.631479 | 2.2:+54502763 | MS.gene65291:CDS |
| AATACTTTATTCGGTATGGG+TGG | 0.635180 | 2.2:-54500120 | None:intergenic |
| GAGGATTTGGAAAATATGGA+TGG | 0.636956 | 2.2:+54495180 | MS.gene65291:CDS |
| TTTAACGGCCATCTCTGGCG+AGG | 0.637022 | 2.2:-54502815 | None:intergenic |
| CCTGTCGAACCACATAGGAT+CGG | 0.642665 | 2.2:-54499076 | None:intergenic |
| TCCTTCCTGTCGAACCACAT+AGG | 0.644277 | 2.2:-54499081 | None:intergenic |
| AAGGAGACCAAAATCACAGT+GGG | 0.645129 | 2.2:+54500041 | MS.gene65291:CDS |
| GTGGTGATCAGACAATTGAT+GGG | 0.645553 | 2.2:+54502593 | MS.gene65291:CDS |
| TCTACCGTCTGAATGATGAT+GGG | 0.646554 | 2.2:+54492115 | MS.gene65291:CDS |
| CTAAGCTTTCAAGAACCTGG+TGG | 0.648285 | 2.2:+54492924 | MS.gene65291:CDS |
| AGAAAGAAACTGATACACCT+AGG | 0.653012 | 2.2:+54502713 | MS.gene65291:CDS |
| GTGGTTAATCAGTGATGATG+AGG | 0.661299 | 2.2:+54502098 | MS.gene65291:intron |
| TCAACCAGTCCACCAGACCT+CGG | 0.662473 | 2.2:-54502313 | None:intergenic |
| TTTAAGCAAGAGCTTACCGA+TGG | 0.664154 | 2.2:+54498236 | MS.gene65291:CDS |
| TGTTACTTCAGATAATCCAG+AGG | 0.664243 | 2.2:+54495517 | MS.gene65291:intron |
| ATGACGTGAAATAGACGTAG+AGG | 0.669697 | 2.2:-54502127 | None:intergenic |
| GATGGGAAATGGGACGACCA+GGG | 0.670847 | 2.2:+54492132 | MS.gene65291:CDS |
| GGTTGACTATGATGATGATG+AGG | 0.676866 | 2.2:+54502330 | MS.gene65291:CDS |
| ACAGTGTAAACAGTGAGTTG+AGG | 0.684304 | 2.2:+54493758 | MS.gene65291:CDS |
| AAATTCGTAGACCCTGACAA+AGG | 0.693878 | 2.2:+54500022 | MS.gene65291:CDS |
| AAGATTACAAGCCACCACCA+AGG | 0.706833 | 2.2:+54502359 | MS.gene65291:CDS |
| AAAGCTTAGTGCTATCTCAG+TGG | 0.717675 | 2.2:-54492910 | None:intergenic |
| GTGATCAGACAATTGATGGG+AGG | 0.730068 | 2.2:+54502596 | MS.gene65291:CDS |
| TTTGACTAGAGTATTAGACG+AGG | 0.738222 | 2.2:+54495934 | MS.gene65291:CDS |
| GCTCCATTGGATAACACCTG+CGG | 0.747283 | 2.2:-54502180 | None:intergenic |
| AAAGGAGACCAAAATCACAG+TGG | 0.758419 | 2.2:+54500040 | MS.gene65291:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 54492105 | 54502846 | 54492105 | ID=MS.gene65291 |
| chr2.2 | mRNA | 54492105 | 54502846 | 54492105 | ID=MS.gene65291.t1;Parent=MS.gene65291 |
| chr2.2 | exon | 54492105 | 54492185 | 54492105 | ID=MS.gene65291.t1.exon1;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54492105 | 54492185 | 54492105 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54492596 | 54492695 | 54492596 | ID=MS.gene65291.t1.exon2;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54492596 | 54492695 | 54492596 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54492877 | 54492961 | 54492877 | ID=MS.gene65291.t1.exon3;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54492877 | 54492961 | 54492877 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54493065 | 54493114 | 54493065 | ID=MS.gene65291.t1.exon4;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54493065 | 54493114 | 54493065 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54493746 | 54493825 | 54493746 | ID=MS.gene65291.t1.exon5;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54493746 | 54493825 | 54493746 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54494240 | 54494299 | 54494240 | ID=MS.gene65291.t1.exon6;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54494240 | 54494299 | 54494240 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54495138 | 54495237 | 54495138 | ID=MS.gene65291.t1.exon7;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54495138 | 54495237 | 54495138 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54495331 | 54495408 | 54495331 | ID=MS.gene65291.t1.exon8;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54495331 | 54495408 | 54495331 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54495528 | 54495595 | 54495528 | ID=MS.gene65291.t1.exon9;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54495528 | 54495595 | 54495528 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54495702 | 54495770 | 54495702 | ID=MS.gene65291.t1.exon10;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54495702 | 54495770 | 54495702 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54495926 | 54496003 | 54495926 | ID=MS.gene65291.t1.exon11;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54495926 | 54496003 | 54495926 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54496092 | 54496187 | 54496092 | ID=MS.gene65291.t1.exon12;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54496092 | 54496187 | 54496092 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54498210 | 54498280 | 54498210 | ID=MS.gene65291.t1.exon13;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54498210 | 54498280 | 54498210 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54498850 | 54498927 | 54498850 | ID=MS.gene65291.t1.exon14;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54498850 | 54498927 | 54498850 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54499031 | 54499124 | 54499031 | ID=MS.gene65291.t1.exon15;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54499031 | 54499124 | 54499031 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54499582 | 54499680 | 54499582 | ID=MS.gene65291.t1.exon16;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54499582 | 54499680 | 54499582 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54499920 | 54500137 | 54499920 | ID=MS.gene65291.t1.exon17;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54499920 | 54500137 | 54499920 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54500227 | 54500341 | 54500227 | ID=MS.gene65291.t1.exon18;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54500227 | 54500341 | 54500227 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54501269 | 54501400 | 54501269 | ID=MS.gene65291.t1.exon19;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54501269 | 54501400 | 54501269 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54501704 | 54501811 | 54501704 | ID=MS.gene65291.t1.exon20;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54501704 | 54501811 | 54501704 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54501916 | 54502022 | 54501916 | ID=MS.gene65291.t1.exon21;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54501916 | 54502022 | 54501916 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54502110 | 54502226 | 54502110 | ID=MS.gene65291.t1.exon22;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54502110 | 54502226 | 54502110 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| chr2.2 | exon | 54502312 | 54502846 | 54502312 | ID=MS.gene65291.t1.exon23;Parent=MS.gene65291.t1 |
| chr2.2 | CDS | 54502312 | 54502846 | 54502312 | ID=cds.MS.gene65291.t1;Parent=MS.gene65291.t1 |
| Gene Sequence |
| Protein sequence |
