AlfalfaGEDB | MS.gene86826

M. sativa cultivar XinJiangDaYe / MS.gene86826

KEGG: -
GO: -
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86826.t1	XP_013468873.1	96	1176	46	1	1	1175	1	1176	0.00E+00	2051.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86826.t1	Q9ZUA9	44.3	61	29	2	21	77	634	693	9.7e-07	57.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86826.t1	A0A072VXY1	96.0	1176	46	1	1	1175	1	1176	0.0e+00	2051.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene86826	0.891056	5.63E-74	-1.69E-46
MS.gene049159	MS.gene86826	0.840483	8.46E-58	-1.69E-46
MS.gene04918	MS.gene86826	0.815464	9.12E-52	-1.69E-46
MS.gene04920	MS.gene86826	0.811732	6.04E-51	-1.69E-46
MS.gene049254	MS.gene86826	0.832339	1.00E-55	-1.69E-46
MS.gene049283	MS.gene86826	0.839873	1.22E-57	-1.69E-46
MS.gene049300	MS.gene86826	0.840633	7.73E-58	-1.69E-46
MS.gene049350	MS.gene86826	0.829576	4.76E-55	-1.69E-46
MS.gene049368	MS.gene86826	0.871069	9.05E-67	-1.69E-46
MS.gene049499	MS.gene86826	0.835091	2.05E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86826.t1	MTR_1g077940	96.514	1176	40	1	1	1175	1	1176	0.0	2337

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86826.t1	AT1G32810	47.170	371	165	8	790	1151	688	1036	6.29e-68	249
MS.gene86826.t1	AT4G10600	56.000	200	61	6	12	211	3	175	1.22e-60	207
MS.gene86826.t1	AT4G10600	56.000	200	61	6	12	211	3	175	1.22e-60	207

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Find 294 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGACACAGCGTATG+TGG	0.511544	1.1:-58345968	MS.gene86826:CDS
AAAATTACCAGGTAGTTCAT+TGG	0.443899	1.1:+58347194	None:intergenic
AAACAAGGGCGGAGATTGCT+TGG	0.464950	1.1:-58347577	MS.gene86826:intron
AAACGGATAGAGAAGGAGAA+GGG	0.649898	1.1:-58346012	MS.gene86826:CDS
AAACTTCTTAGGAACATACC+CGG	0.677501	1.1:+58350097	None:intergenic
AAAGAAGTCGAGGGATCTGA+AGG	0.606898	1.1:-58347162	MS.gene86826:CDS
AAAGCGAAGAACAACCGTGT+CGG	0.702603	1.1:-58350392	MS.gene86826:CDS
AAAGTGGAACGAGTAAGTTA+GGG	0.541809	1.1:-58349878	MS.gene86826:CDS
AAATCTGCAAAAGAGACTGA+TGG	0.542709	1.1:-58343651	MS.gene86826:CDS
AACAACTCAGGATCCCCACC+AGG	0.607787	1.1:+58350170	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	58343401	58350612	58343401	ID=MS.gene86826
chr1.1	mRNA	58343401	58350612	58343401	ID=MS.gene86826.t1;Parent=MS.gene86826
chr1.1	exon	58349577	58350612	58349577	ID=MS.gene86826.t1.exon1;Parent=MS.gene86826.t1
chr1.1	CDS	58349577	58350612	58349577	ID=cds.MS.gene86826.t1;Parent=MS.gene86826.t1
chr1.1	exon	58348547	58348914	58348547	ID=MS.gene86826.t1.exon2;Parent=MS.gene86826.t1
chr1.1	CDS	58348547	58348914	58348547	ID=cds.MS.gene86826.t1;Parent=MS.gene86826.t1
chr1.1	exon	58346513	58347592	58346513	ID=MS.gene86826.t1.exon3;Parent=MS.gene86826.t1
chr1.1	CDS	58346513	58347592	58346513	ID=cds.MS.gene86826.t1;Parent=MS.gene86826.t1
chr1.1	exon	58346251	58346403	58346251	ID=MS.gene86826.t1.exon4;Parent=MS.gene86826.t1
chr1.1	CDS	58346251	58346403	58346251	ID=cds.MS.gene86826.t1;Parent=MS.gene86826.t1
chr1.1	exon	58345752	58346106	58345752	ID=MS.gene86826.t1.exon5;Parent=MS.gene86826.t1
chr1.1	CDS	58345752	58346106	58345752	ID=cds.MS.gene86826.t1;Parent=MS.gene86826.t1
chr1.1	exon	58345100	58345170	58345100	ID=MS.gene86826.t1.exon6;Parent=MS.gene86826.t1
chr1.1	CDS	58345100	58345170	58345100	ID=cds.MS.gene86826.t1;Parent=MS.gene86826.t1
chr1.1	exon	58344869	58344991	58344869	ID=MS.gene86826.t1.exon7;Parent=MS.gene86826.t1
chr1.1	CDS	58344869	58344991	58344869	ID=cds.MS.gene86826.t1;Parent=MS.gene86826.t1
chr1.1	exon	58343401	58343742	58343401	ID=MS.gene86826.t1.exon8;Parent=MS.gene86826.t1
chr1.1	CDS	58343401	58343742	58343401	ID=cds.MS.gene86826.t1;Parent=MS.gene86826.t1

Gene Sequence

>MS.gene86826

ATGAAAGGGCGATCGAATCGCCCGATGGATCCACCACCGGACGAATGGGTCGACGGTTCATGGACGGTGGACTGTATCTGCGGTGTCAATTTCGACGATGGCGAAGAGATGGTAAAGTGCGATGAATGTGACGTATGGGTTCACACGCGTTGTTCTCGTTACGTTAAAGGTGATGACATGTTCGCGTGTGACAAGTGTAAAGCGAAGAACAACCGTGTCGGAGCGGAGAACAATACCGAGGAAACTGAGGTTGCGCAGTTTCTTGTCGAGCTTCCGACAAAGACGATTTCTTTGGAGAGAAGGGGGAATGGTAATAGGAGTAATGGAATTGCTTCTTCTAGGGTTGCGTCGTGTTCGCGGAGGCCGTTTAAGCTTTGGACTGATATACCTATGGAAGAGAGGGTTCATGTTCAGGGGATGCCTGGTGGGGATCCTGAGTTGTTTGAGGGGAAGACGGTGTCGTCGATTTTTGGACCGCAGTTGTGGAAATGTACCGGGTATGTTCCTAAGAAGTTTAGTTTTCAGTATAGGGAGTTTCCTTCTTGGTATGAGAATGAGAATGAAAATGATGATAAGGGTGTGCAAGAGAATGAGGATAATGGGGCTGGGGTGCTTTTGTCGTTGTCGAAAGAGGTTAATAATATGTTGGCGAAGTCGCCTGTTACGACTTTGGTTGATATGGGATCGAGGCAGGGTAAGAAGGGTTTTAAGGAAAGTGGAACGAGTAAGTTAGGGAAGGATCATATGCCGCGTGTCCATAATGCGGTTAAGAAGGAGAGGAATTTGCTTAGGCCGTTTGTTGTTCATTCGAGTAAGCGTGGGAAGGATGAATTATCGAAAGATAGGAGTGGGAAGAAGAAGCGGGTTAAAACTTCTGATAGAGAGGAGGTGGATATCAAGAAGAGGACTTCTGACAGAGAGGATGTTGATCCCAAGAGGAGGAGTTCTGATAGAGAGGATGTTAATCCCAAGAGGAAGACTTCTGATAGAGAGGATGTAGATCACAAGAGGAGGACTTCACATTCTTCTAAAGCAGGTTATTTGATTTGATTTGATTTTGTTTTCTCTTTTCTGCAGTTTTACTATAAGTTTTGTCGTTCTTAATTTGGAGAATTGCTGAAATGTTAGTCTTGTCCTAGATAATAGATGTAACTTATAGGAGAATAAATATTAAAATAATCATGCAATAATTATCGGGTTTTATTTTTTCAACAGATGTTCATATAAGTTGAAATTAGGTTTTGTATTTTAATTTTTTCCGAAACTCTCGTCTAATTTATCTACGAAGATTTATAAACTCACAAGAACTTTTTTCAGTTACTAAACACGTTTTAATTGAGAAGCTGGTAGAAGTTAGAAGCAAATCGAAACTAGTCTTAGAACACTATCCCACTAAGTTAATGAAACCACAATTACAAAATGTGATTTAGTCAATATGTTGATTGCTAGGTTGTATGTGTAAAATAATTATCTTTCTTTTAGTAGTTGATTTTTGCCTTGAAATCCATATCCCTGTCGAGATCTCTGTCTTCATGATTTCCTCCTATTACAATTATTACTAGTTACTATGGACAAGTTATCTAATCTCGTTTCATTGTGCCTGTGGGCGAACGTTGTCAACAATTGGCAGTATTCCACGTCTTGCAACTTGATGCATGCTTGTTGACTTTCTCTTTTTCCTCTCATTTTGATTACTAGCATTTACACCCACCTGTGATGCAAAACAATTGGCATTTTATGGAGACAGAGGTCCGAAGGTTTTCAAGGATGACATTCGGAGCATAAAGAATAAGAACTTAAAAGACACAGTGGTTCAAGATCATATTTCTAATGATTCTTTTGCTGTGGGTACCACCATGGAGGTATCAAATAACAACTTGACAACTACCGAAGAGTCTTCAGAAGCGTTATATCCCAAAAAAACAAGGCGTAGTCATTCTGCTGGAGATGTATTAGCAGAAGAGAAGACTGGCAATAAAGTTCTTGAGATGTCGTCTAAGACTGATGATGCCGTTACATCAGTTCTAAAGCATACTTATCTTGAAAATGCCTCAGCTAAAAAGAAGGTATGTATTACTGACATTTTTGCAATCAAACTTGTCAAAATTTGGATAATTAAAATCCTATATTATGTCTGCATGTGTCAATTAGTAATATGCTGCCTGTACTTATTGCCTGCCCTACTATGCATTTAATAACGTAAATCATCAATATTGGCTGTGTGAGTTTTCTTGTATTATTGCAACTGTATGATCACTTCTATTTCAAGTGATAATCGACTATTATGGAAATTGCTATCTAGAGCTAAGAGCCTAAGACTGTGCATGATAAAGTGTGCTCAGTGTCCGATTATAAATTGATAATCAACCAAAGGGCCACAACTTTTAATATACTGAGACTTAAGGTTAGGTCTGTGCTTGATGAAGCATGCATTTCATACTTTTCCTCTTATATCCCAACACCCTTTTCTTCAACTATAATTTAAAGAAGGTTGTGGAATTTTCAGATGGTTTAAGAGAGGCTCGCAGGGCTTTAATCGTGGCTATGATTTGAAGTAATTTGAGCAGATTGCACAAATGAATGGTGTGCTTGTATCTATCTAGAATAACAGTCGATAACAAATTCTAGGTTTTAAAATACGACAATCTATACTCTTTTTTGGTGTTAGAGATTAGTCTAGACTTAAATCGCGGAGAAAACATGTGGAAGAGTTTGGTAAATGAATTGGAAAATAAAACATAAGAAAACTTCTTTGTTTATCAGATACTATGCTAGAATGGCAAGCCTTTACTTTCTTCCATCCCTCCATCTTTTTTGAAACTTGGGGCTCGCAATCATGCCTAAATATGCGATACTTTAAATTTCAGCTTGGGAGCTTTCAGGTTTTTTGCTAGGGTTTTTGCATATTTTCTTACTAGGTTTATCATGCATAGCTTTACGGATGTTTTGTCTTGTCTTTTATGCCTTTAGACTTCGTCTCACACTATATTGTGATGACATTTCTTGCTTCTACAAACAAGGGCGGAGATTGCTTGGAAGCTAATAATGTGGATGAAACTTTAGCAGCAAGAAGCCCTATGAGTCCTCAGACAGAAGATCCTCGTGGTTCTGCACCAGAACATATGGAAAAGCAAGTTTCTCAAGATATTGACTGTAACCAGCATCCAAGCTCTGGACAATGCAAAGTTAAGGCGAAGAGAGAAGATGACAAAGACAAGTTTAAGCACTCTAAGTGTCATTTTTCGTCTATCAGTGATCTTAAAAACAATGGAAAGTCATCTGATCCCACATCTGATATTGGTAAAGTGAATGATGCTGCAGTTCCCAGCTTACCTTTATGTGTAAATAAGGTGGGTGATGTTGGCATATCATCAGAAGTACTCCCTGATAGTCATACCAATGAACTACCTGGTAATTTTTCTCATGGAAAAGAAGTCGAGGGATCTGAAGGTTCCTTTGAAACACAAAAGGGATTCTCAGAAACAAAAGATGGTATGGACTCTGCTAAGAATCCATCAAAATCTGAAGCACTTGAATGTCAAAGTAAAATGCTAGCTTCTGTCCGAAAGACGTCTCCAACTTCATCAATCATGAACTGCAAATCACCAAGCCAGGACTTCAAATCTGAAGATACTGAAACTGCTAATCCTTTTACAAAGCATGGAGCTAAAGCTGACCATAACATTCATACAAAGAATGGAAGTTGTACGAATGATGGTGCAAGGGATGAAATTCCAAGGAAGTATGTAAGAGAGCGTCCAAGATCCTCTTCAAAATCCTCTTTACATTCAAGCCAGAGTACGCAAAATTCTGTTCCAAAGCAAGCAAATCCAGATGTGAGAGATTCTGTTCATTGTTCGTTATCTAAACCATCCCTGGGTCACCAGACTCCAAGTGTCGTTGGTTCTAGTGAGACTAATGCATCAATGCACCATCAAAAAGGATTGCAAGCGCAGAGTAAAACTTCATCTTTAGTGCCACAGAAAGCTGAAAGGCTTAATCAAACAAATACCCATTCTTCCTCTAAGTTGAACCAGAGCCACACACCATCATTGAATCCTTCTCCAACATTAAATTCTTCAATGCTGAGTGATGAAGAGGTATGGACTGGACTTCTAGTTTTCTTATTAAGTTTGAAAAATGTTTCTCCTATAGAATGTCCTTGTTTTTTTCTCTTTTAATTCATTTTTGTGTTTTATTTATTGGCAGCTAGCTTTGCTATTGCATCAAGAACTGAATAGTTCACCTCGTGTACCACGGGTACCCCGTGCACGCCAAACAGGTAGCTTGCCACAAACAGGTACCAGTGCTACAAACATGCTAATGAAGCGAGCATCGGTTGGAGGAAAGGATAACTATTTGGTAGGAATTTGTTCCATCAACTAAAAATGATACACATGATTTCATATATGAATTCAATTTCTAGAGTTTTTGCGAGTTTTCACGATAATATTGGTCAATATATCTCCATAATAGTGGTGACTTATTATATGGTCATATGCACAGGTATCTAAAAGAAAATACAAGGATGCAACTAGAGATGGGTTTTGCAGTTCTCGTGAACCAGAAGACGAAGCTAAACGGATAGAGAAGGAGAAGGGTCAATCATCATCTGATCAGAGAAAACAAGACACAGCGTATGTGGAAGAAGCTTCTGTAAAGGAAGAAGGAGGCCGTACATGTGTGACAGCTGCAAACTCTATTACAAACAACGTTGTTTCCACAACCCCTGCCATTGCAAACAGCGGTTCACCTTCCCCCCGTGAGGATCGAAATTTGTCATCAATGAGGAACTCTCCGAGGAATATATCTGATGATGATACAGCAACTGCTGGAAGGCCAGTTCATCACACCTTACCTGGTAGCTTCCTTTCAGGGATACATTGACTTCTCTTTTTGTGTTTGTTTATATTTTTATTTTGAAACCATTCTATATTCGCATGTTATAAGTATAGGATTGATTATTGTTGGTTAATAAAACATTGAACAACAACAACAACGGCAACAACCAAGCCTTATCACACTAAGTGGGGTCGGCTACATGGATCAAATGACGCCATAGTGTTCTATCGAAAACCATATTTGAATCCAACTCATTGACCTCTAAATCTTTTCTAATAAAACATTGACTTAAAAAAAATATTTATTTAGTCTCATGGCTTTTAAAATTCATGCATGAACCTTAAGCTTCGGGTTCAGTTTCAATACCTTGAGTGCTACATGAAATTTTTATAAAAAAATTACTTCTCTATAGTTGATAGGTTGTGCCATATGTGCATCTAGGTTTCGGCATGGTTAGCTCTTGTAATTTGTAGGTAGGCAAACACCGAAACCTGTGTTATTATAAATTTTCTCTTGCAAAATAAATAGAAAAATAACCGGTGCTTATGTATTGGGAAATTTGTGGATAGTTTCTTACTATATACACGTATTCAAGTGCAGGCTTAATCAATGAGATAATGAGCAAGGGCAGGCGCATGACATACGAAGAACTCTGCAGTGCTGTGCTACCGGTATGGTTCTTTATCAATGTTGTTTTTGAGGTTCCTACTTTTGTTTTTTATTGTGACAGGTTGAAATAGGTTGCCATGAACATGTTCATTTCTTTTTAATTGTCACAGCACTGGCCCAACTTAAGAAAACATAATGGAGAGCGATATGCATATGCAAGTCCCTCCCAAGCTGTTCTTGATTGTTTGAGGAACCGACATGAATGGGCAAGGTTGGTTGATCGCGGTCCAAAGGTACGTATGTGTAATTTGATAATCCCGCTTGAGCTGTCTATTGTTTACTGAATCATAATTAAGATTTCATTTTCAAAAACCTACCAACTCAAGGAGGATTGAATTATTGTTTGCGACTAACCAAATTATGCCAACAAGTTTGGGGCAGAATCCTGTCACTTTTCATGATTGCCACAAATCATTTGTCTTTAGCCAGGAATTGCTTTTTTGGTTATATTATACCATTCTCTGACCATAAGAAACTAGTCTATTTTTTAAATTTATGTTTGTGTCCGATTTGTTTTCTATCTGAAGATAATCATGAATTTTGATTATACAAAATGGCCAGTGGGAACTAATGGATATATGACCTTAAACTGTATTTGTCTTCCATGTGTAACCTACTTGTATGTTTCTGAGTCCAACCAATTTTAAGATCTGCTTTCATATTAAAGGATTTAAATTCATTGCAGACAATATGTTTTGACATATTGCCTTTACTTGATCGGAAAAGATAATTTGTAGTTATAAATTGATGCAGAAAAATAGAATACATGCTCCTCCCTTATAGAATAGACGGGAAGTAAAGCGCAGGGAGATTATCTAGACCCCTACAAAAATAGGAAGTTACCTATATCTTGTCAATATTTACAAATATTATTGAGTTGTGGAATCAGTTTGTAGTAAATGCAAGTAAGACAACCTCTAAATAGATCCATTATGGATCCAACCCTTCCTATCTTTGTTGTCCTATTATCTATGAGTTGGAAATTGAACTTCTTTTGACTCCTTTAAGATCATTAAGACCCATAGACTGACCAGGTCTAGGTTCGGTGAAATAATTACTGTTATCCGCAAAAAAATATGTGGGTTTCTAATTTGTGGGGGAACCCCAGAAGTCCAATACAGAGGAATAGATGATTTTTGTGGGCTACTGGTAGTGAATATCATTGTACTTTGTAACAATATTCTCTTGCGTAATTCCATTCAGTTGTAATATATTTAGTAGAAGCTCTTTCTTTTATTCATTTGGTCATTCCTTTGCAGTGTGGCCTGGTTTTTTGTTGTTGTCTACTCTGTTGTTACATTGCCACTCTATTTACTGTCTTGAAAGGTTTCAATCTGAACATGAATCACAATATTTCAGACAAATACTAGGAAAAGGCGTAGTAAGCTGGATACTGAAGAATCTGAAGATAATGGATATGACAAAGGTAAATCTGCAAAAGAGACTGATGGGAAGAACTTTGAGTTGCAAAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCTCGAAAACGCAGGCGGCTGGCTCTTCAGGGAAGAGCAGTAAAGGATGTCAGGAGACAAAAAGGCGACTCACTAACTGGTGAGGACGTCGGTCCATTCTCCAATACTAGTGAAGGGAGTTTGTTTAGTGAGGATGAAGTTCAAGTTGACAGAATAGGTCCAGCAGGAAGTACATCAGATGATGAGACGGGGAGTGCTTAA

Protein sequence

>MS.gene86826.t1

MKGRSNRPMDPPPDEWVDGSWTVDCICGVNFDDGEEMVKCDECDVWVHTRCSRYVKGDDMFACDKCKAKNNRVGAENNTEETEVAQFLVELPTKTISLERRGNGNRSNGIASSRVASCSRRPFKLWTDIPMEERVHVQGMPGGDPELFEGKTVSSIFGPQLWKCTGYVPKKFSFQYREFPSWYENENENDDKGVQENEDNGAGVLLSLSKEVNNMLAKSPVTTLVDMGSRQGKKGFKESGTSKLGKDHMPRVHNAVKKERNLLRPFVVHSSKRGKDELSKDRSGKKKRVKTSDREEVDIKKRTSDREDVDPKRRSSDREDVNPKRKTSDREDVDHKRRTSHSSKAAFTPTCDAKQLAFYGDRGPKVFKDDIRSIKNKNLKDTVVQDHISNDSFAVGTTMEVSNNNLTTTEESSEALYPKKTRRSHSAGDVLAEEKTGNKVLEMSSKTDDAVTSVLKHTYLENASAKKKGGDCLEANNVDETLAARSPMSPQTEDPRGSAPEHMEKQVSQDIDCNQHPSSGQCKVKAKREDDKDKFKHSKCHFSSISDLKNNGKSSDPTSDIGKVNDAAVPSLPLCVNKVGDVGISSEVLPDSHTNELPGNFSHGKEVEGSEGSFETQKGFSETKDGMDSAKNPSKSEALECQSKMLASVRKTSPTSSIMNCKSPSQDFKSEDTETANPFTKHGAKADHNIHTKNGSCTNDGARDEIPRKYVRERPRSSSKSSLHSSQSTQNSVPKQANPDVRDSVHCSLSKPSLGHQTPSVVGSSETNASMHHQKGLQAQSKTSSLVPQKAERLNQTNTHSSSKLNQSHTPSLNPSPTLNSSMLSDEELALLLHQELNSSPRVPRVPRARQTGSLPQTGTSATNMLMKRASVGGKDNYLVSKRKYKDATRDGFCSSREPEDEAKRIEKEKGQSSSDQRKQDTAYVEEASVKEEGGRTCVTAANSITNNVVSTTPAIANSGSPSPREDRNLSSMRNSPRNISDDDTATAGRPVHHTLPGLINEIMSKGRRMTYEELCSAVLPHWPNLRKHNGERYAYASPSQAVLDCLRNRHEWARLVDRGPKTNTRKRRSKLDTEESEDNGYDKGKSAKETDGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRQKGDSLTGEDVGPFSNTSEGSLFSEDEVQVDRIGPAGSTSDDETGSA