Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68264.t1 | XP_013455470.1 | 95.5 | 876 | 33 | 5 | 1 | 876 | 1 | 870 | 0.00E+00 | 1503 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68264.t1 | Q03164 | 26.5 | 204 | 131 | 7 | 142 | 336 | 1431 | 1624 | 2.2e-16 | 89.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68264.t1 | A0A072UJ97 | 95.5 | 876 | 33 | 5 | 1 | 876 | 1 | 870 | 0.0e+00 | 1503.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene68264.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene68264 | 0.829771 | 4.27E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene68264 | 0.822046 | 2.92E-53 | -1.69E-46 |
| MS.gene049264 | MS.gene68264 | 0.806222 | 9.13E-50 | -1.69E-46 |
| MS.gene049786 | MS.gene68264 | 0.80354 | 3.32E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene68264 | -0.814109 | 1.82E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene68264 | 0.823393 | 1.42E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene68264 | 0.806767 | 7.01E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene68264 | 0.80395 | 2.73E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene68264 | 0.823709 | 1.20E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene68264 | 0.85217 | 5.50E-61 | -1.69E-46 |
| MS.gene050941 | MS.gene68264 | 0.849719 | 2.70E-60 | -1.69E-46 |
| MS.gene051066 | MS.gene68264 | 0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene68264 | 0.812153 | 4.89E-51 | -1.69E-46 |
| MS.gene051147 | MS.gene68264 | 0.800797 | 1.22E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene68264 | 0.8072 | 5.68E-50 | -1.69E-46 |
| MS.gene051210 | MS.gene68264 | 0.827057 | 1.93E-54 | -1.69E-46 |
| MS.gene051332 | MS.gene68264 | 0.803647 | 3.15E-49 | -1.69E-46 |
| MS.gene051363 | MS.gene68264 | 0.802952 | 4.40E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene68264 | 0.804949 | 1.69E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene68264 | 0.822758 | 2.00E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene68264 | 0.816609 | 5.06E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene68264 | 0.803863 | 2.85E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene68264 | 0.811379 | 7.21E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene68264 | 0.801552 | 8.53E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene68264 | 0.803675 | 3.11E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene68264 | 0.820906 | 5.35E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene68264 | 0.800737 | 1.25E-48 | -1.69E-46 |
| MS.gene053726 | MS.gene68264 | 0.810066 | 1.39E-50 | -1.69E-46 |
| MS.gene054139 | MS.gene68264 | 0.814171 | 1.77E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene68264 | 0.839506 | 1.52E-57 | -1.69E-46 |
| MS.gene054576 | MS.gene68264 | 0.814967 | 1.18E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene68264 | 0.827345 | 1.65E-54 | -1.69E-46 |
| MS.gene054875 | MS.gene68264 | 0.829243 | 5.74E-55 | -1.69E-46 |
| MS.gene055310 | MS.gene68264 | 0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene68264 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene68264 | 0.831819 | 1.34E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene68264 | 0.809185 | 2.14E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene68264 | 0.803173 | 3.96E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene68264 | 0.81007 | 1.38E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene68264 | 0.810973 | 8.83E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene68264 | 0.853769 | 1.92E-61 | -1.69E-46 |
| MS.gene055926 | MS.gene68264 | 0.821419 | 4.08E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene68264 | 0.828001 | 1.15E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene68264 | 0.800526 | 1.38E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene68264 | 0.813397 | 2.61E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene68264 | 0.802202 | 6.27E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene68264 | 0.82221 | 2.68E-53 | -1.69E-46 |
| MS.gene056509 | MS.gene68264 | 0.811308 | 7.47E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene68264 | 0.800513 | 1.39E-48 | -1.69E-46 |
| MS.gene056638 | MS.gene68264 | 0.806068 | 9.84E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene68264 | 0.816634 | 5.00E-52 | -1.69E-46 |
| MS.gene056787 | MS.gene68264 | 0.80108 | 1.07E-48 | -1.69E-46 |
| MS.gene056986 | MS.gene68264 | 0.805219 | 1.48E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene68264 | 0.82236 | 2.47E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene68264 | 0.843094 | 1.73E-58 | -1.69E-46 |
| MS.gene057600 | MS.gene68264 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene68264 | 0.806449 | 8.18E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene68264 | 0.836582 | 8.60E-57 | -1.69E-46 |
| MS.gene058081 | MS.gene68264 | 0.871563 | 6.21E-67 | -1.69E-46 |
| MS.gene058126 | MS.gene68264 | 0.800562 | 1.36E-48 | -1.69E-46 |
| MS.gene058214 | MS.gene68264 | 0.828923 | 6.86E-55 | -1.69E-46 |
| MS.gene058223 | MS.gene68264 | -0.808065 | 3.72E-50 | -1.69E-46 |
| MS.gene058278 | MS.gene68264 | 0.803374 | 3.59E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene68264 | 0.824228 | 9.04E-54 | -1.69E-46 |
| MS.gene05897 | MS.gene68264 | 0.852198 | 5.40E-61 | -1.69E-46 |
| MS.gene059283 | MS.gene68264 | 0.8417 | 4.05E-58 | -1.69E-46 |
| MS.gene059439 | MS.gene68264 | 0.815383 | 9.51E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene68264 | 0.809556 | 1.79E-50 | -1.69E-46 |
| MS.gene059952 | MS.gene68264 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene68264 | 0.800527 | 1.38E-48 | -1.69E-46 |
| MS.gene06010 | MS.gene68264 | 0.846011 | 2.84E-59 | -1.69E-46 |
| MS.gene060191 | MS.gene68264 | 0.825951 | 3.54E-54 | -1.69E-46 |
| MS.gene060296 | MS.gene68264 | 0.854732 | 1.01E-61 | -1.69E-46 |
| MS.gene060435 | MS.gene68264 | 0.827215 | 1.77E-54 | -1.69E-46 |
| MS.gene060520 | MS.gene68264 | 0.832267 | 1.04E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene68264 | 0.848151 | 7.36E-60 | -1.69E-46 |
| MS.gene060637 | MS.gene68264 | 0.818983 | 1.47E-52 | -1.69E-46 |
| MS.gene060777 | MS.gene68264 | 0.823681 | 1.22E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene68264 | 0.848256 | 6.88E-60 | -1.69E-46 |
| MS.gene060803 | MS.gene68264 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene68264 | 0.801997 | 6.91E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene68264 | 0.803819 | 2.91E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene68264 | 0.80477 | 1.84E-49 | -1.69E-46 |
| MS.gene060870 | MS.gene68264 | 0.804614 | 1.99E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene68264 | 0.833386 | 5.49E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene68264 | 0.815516 | 8.88E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene68264 | 0.800729 | 1.26E-48 | -1.69E-46 |
| MS.gene060937 | MS.gene68264 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene68264 | 0.825277 | 5.12E-54 | -1.69E-46 |
| MS.gene06121 | MS.gene68264 | 0.828274 | 9.85E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68264.t1 | MTR_4g037745 | 95.548 | 876 | 33 | 5 | 1 | 876 | 1 | 870 | 0.0 | 1646 |
| MS.gene68264.t1 | MTR_7g117355 | 38.571 | 70 | 40 | 1 | 270 | 339 | 339 | 405 | 5.77e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68264.t1 | AT3G08020 | 50.056 | 893 | 315 | 17 | 1 | 876 | 1 | 779 | 0.0 | 784 |
| MS.gene68264.t1 | AT3G52100 | 61.358 | 383 | 134 | 7 | 1 | 377 | 1 | 375 | 2.11e-158 | 479 |
| MS.gene68264.t1 | AT3G52100 | 33.252 | 409 | 174 | 13 | 476 | 876 | 361 | 678 | 2.13e-37 | 150 |
| MS.gene68264.t1 | AT3G52100 | 61.358 | 383 | 134 | 7 | 1 | 377 | 1 | 375 | 3.48e-158 | 478 |
| MS.gene68264.t1 | AT3G52100 | 30.663 | 362 | 154 | 11 | 476 | 831 | 361 | 631 | 1.15e-25 | 114 |
| MS.gene68264.t1 | AT3G52100 | 59.343 | 396 | 139 | 8 | 1 | 377 | 1 | 393 | 4.13e-156 | 474 |
| MS.gene68264.t1 | AT3G52100 | 33.252 | 409 | 174 | 13 | 476 | 876 | 379 | 696 | 2.88e-37 | 150 |
| MS.gene68264.t1 | AT3G52100 | 65.979 | 291 | 93 | 2 | 87 | 377 | 4 | 288 | 1.32e-134 | 414 |
| MS.gene68264.t1 | AT3G52100 | 33.252 | 409 | 174 | 13 | 476 | 876 | 274 | 591 | 8.13e-38 | 150 |
Find 201 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAAGTTGGTTATAAATT+TGG | 0.123019 | 4.1:-60085722 | MS.gene68264:CDS |
| AAGCAATAAGGCAAATATTT+TGG | 0.136146 | 4.1:-60085794 | MS.gene68264:CDS |
| AACAATGATCTTTCTTTAAA+AGG | 0.142690 | 4.1:+60084605 | None:intergenic |
| TGAAATTCATAGGTGGTTTC+TGG | 0.153491 | 4.1:-60088993 | MS.gene68264:intron |
| CATCTTGGTAGGTGAATTAT+TGG | 0.205189 | 4.1:+60086131 | None:intergenic |
| TGGCCAGTCAAAACATTTAA+AGG | 0.217949 | 4.1:-60085041 | MS.gene68264:CDS |
| AATAAGTTGGTTATAAATTT+GGG | 0.260701 | 4.1:-60085721 | MS.gene68264:CDS |
| AAGAAGCATTACCATGTAAT+TGG | 0.262907 | 4.1:+60092460 | None:intergenic |
| AGCATCACGCTTAGCTTTCA+TGG | 0.266381 | 4.1:+60092073 | None:intergenic |
| ATCAGACATCCGATGATTCT+TGG | 0.268452 | 4.1:-60084430 | MS.gene68264:intron |
| GATTCCCATCCACTTGAAAT+TGG | 0.272368 | 4.1:+60086499 | None:intergenic |
| CCTACCAAGATGAATGATTA+TGG | 0.283895 | 4.1:-60086120 | MS.gene68264:CDS |
| CCGCTAACAGCAACAATTTC+CGG | 0.284119 | 4.1:+60092140 | None:intergenic |
| ATTTATTTCATTGGAGTTCA+TGG | 0.288581 | 4.1:-60090707 | MS.gene68264:CDS |
| TAACCAGATCTTGATCTCTT+TGG | 0.295044 | 4.1:+60085647 | None:intergenic |
| TCAAAACATTTAAAGGTTTA+CGG | 0.306095 | 4.1:-60085034 | MS.gene68264:CDS |
| TATCAGGACCTTCATTTCTC+TGG | 0.307104 | 4.1:+60085962 | None:intergenic |
| GATACATCGGGCAATCTTAA+TGG | 0.308661 | 4.1:-60090966 | MS.gene68264:CDS |
| AGTGAAGGTTTAGAATCTTT+TGG | 0.315117 | 4.1:+60084731 | None:intergenic |
| TTTGCAGAACATGAACTTAC+TGG | 0.319396 | 4.1:+60089772 | None:intergenic |
| CTATCCTCATCGTCAGAATA+TGG | 0.325229 | 4.1:+60086216 | None:intergenic |
| CTTGTTTCCCTTTGTCAAAT+GGG | 0.326959 | 4.1:+60085258 | None:intergenic |
| GGCGGCGGTGGCACCACTTT+CGG | 0.327840 | 4.1:+60092164 | None:intergenic |
| TCAGGAAGTAGGGTTGATTC+TGG | 0.334958 | 4.1:-60085061 | MS.gene68264:intron |
| ATTGCCAGTGTGATGATATT+AGG | 0.335400 | 4.1:-60088378 | MS.gene68264:intron |
| AGAATTTGTTTCTGTTCGTT+AGG | 0.339995 | 4.1:-60092314 | MS.gene68264:CDS |
| AGGATGCTGTTCAAGAGCTT+TGG | 0.345011 | 4.1:-60086329 | MS.gene68264:CDS |
| AAGAGGTGAAAAGACGTATT+TGG | 0.348962 | 4.1:-60084828 | MS.gene68264:CDS |
| TGTGTGTTTCGGGCACAAAT+AGG | 0.351103 | 4.1:+60089606 | None:intergenic |
| TGTTCGAATTAAAAGCAATA+AGG | 0.361567 | 4.1:-60085806 | MS.gene68264:CDS |
| ACTTGTTTCCCTTTGTCAAA+TGG | 0.370484 | 4.1:+60085257 | None:intergenic |
| CAATCTTAATGGAGACGAAC+AGG | 0.376065 | 4.1:-60090955 | MS.gene68264:CDS |
| GTGTGTTTCGGGCACAAATA+GGG | 0.377093 | 4.1:+60089607 | None:intergenic |
| TCAAGGGCCAGAGGTCAAAA+AGG | 0.391669 | 4.1:-60084640 | MS.gene68264:CDS |
| GGGTGAAGTTGGTCCTTTAG+AGG | 0.394114 | 4.1:-60084921 | MS.gene68264:CDS |
| GAAATTCATAGGTGGTTTCT+GGG | 0.395520 | 4.1:-60088992 | MS.gene68264:intron |
| CCGTTATTACCTCACAAATT+CGG | 0.395579 | 4.1:+60090670 | None:intergenic |
| GGTGATGAATAAATAATATC+AGG | 0.397412 | 4.1:+60085946 | None:intergenic |
| TTGTCGTGGGGAATGTTATC+AGG | 0.399762 | 4.1:-60086457 | MS.gene68264:intron |
| TATTAGATCTTTACATAGCT+TGG | 0.401339 | 4.1:-60085998 | MS.gene68264:CDS |
| ATGATCAACCAAGTTGGATT+AGG | 0.402380 | 4.1:-60084860 | MS.gene68264:CDS |
| AAAATCCCTGTCTGATTGAC+AGG | 0.418712 | 4.1:+60085886 | None:intergenic |
| ATGAGAACATGGATGCAAAC+TGG | 0.421404 | 4.1:-60084502 | MS.gene68264:CDS |
| GAAAATATTTCTTCTTGTGT+TGG | 0.421725 | 4.1:+60086246 | None:intergenic |
| TGACCTCTGGCCCTTGATAG+TGG | 0.426050 | 4.1:+60084646 | None:intergenic |
| CCGGAAATTGTTGCTGTTAG+CGG | 0.434395 | 4.1:-60092140 | MS.gene68264:CDS |
| ATGCTGTTCAAGAGCTTTGG+AGG | 0.441727 | 4.1:-60086326 | MS.gene68264:CDS |
| ACAAATTCGGCAAGCTCGGC+AGG | 0.442277 | 4.1:+60090683 | None:intergenic |
| ATTTATTCATCACCTGCTAC+TGG | 0.449750 | 4.1:-60085937 | MS.gene68264:CDS |
| ATAGGAGCTGCTTGAAAAGT+TGG | 0.450677 | 4.1:-60090824 | MS.gene68264:CDS |
| ATCAGGACCTTCATTTCTCT+GGG | 0.451501 | 4.1:+60085963 | None:intergenic |
| CTACATGTTACTTACGATGA+TGG | 0.452765 | 4.1:-60083929 | MS.gene68264:CDS |
| ATCTTGGTAGGTGAATTATT+GGG | 0.454003 | 4.1:+60086132 | None:intergenic |
| ATTGTTGCTGTTAGCGGTGG+TGG | 0.455700 | 4.1:-60092134 | MS.gene68264:CDS |
| GAATTTGTTTCTGTTCGTTA+GGG | 0.455855 | 4.1:-60092313 | MS.gene68264:CDS |
| ACAATTTCCGGCGGCGGCGG+TGG | 0.459269 | 4.1:+60092152 | None:intergenic |
| GTTAGCGGTGGTGGTGGTGG+TGG | 0.459911 | 4.1:-60092125 | MS.gene68264:CDS |
| TATCACCAATTTCAAGTGGA+TGG | 0.460018 | 4.1:-60086504 | MS.gene68264:CDS |
| GTGAATTTCTCGGTGATTCA+CGG | 0.460049 | 4.1:-60092223 | MS.gene68264:CDS |
| TATGCTAGGAGGCTTGAATC+TGG | 0.462814 | 4.1:-60092008 | MS.gene68264:CDS |
| GGTGAAGTTGGTCCTTTAGA+GGG | 0.464502 | 4.1:-60084920 | MS.gene68264:CDS |
| TGACTCAAGCTTCCAGTAGC+AGG | 0.469535 | 4.1:+60085925 | None:intergenic |
| TCTGAATTCAACTTCACCTC+TGG | 0.469813 | 4.1:-60084965 | MS.gene68264:CDS |
| CTTTCCATAATCATTCATCT+TGG | 0.470156 | 4.1:+60086116 | None:intergenic |
| GATACAGACTCTACCTTATG+AGG | 0.470210 | 4.1:+60089710 | None:intergenic |
| GCTGTTAGCGGTGGTGGTGG+TGG | 0.472919 | 4.1:-60092128 | MS.gene68264:CDS |
| AATTCAACCCATTTGACAAA+GGG | 0.483325 | 4.1:-60085265 | MS.gene68264:CDS |
| GAGTAGTCAAAATTCTCATC+AGG | 0.485190 | 4.1:-60084681 | MS.gene68264:CDS |
| GATCTTTCTTTAAAAGGTGA+AGG | 0.485940 | 4.1:+60084611 | None:intergenic |
| CTGTCTGCAACCTCCTCATA+AGG | 0.486512 | 4.1:-60089723 | MS.gene68264:intron |
| TGATGGAAAAGTGAGTATCT+TGG | 0.491862 | 4.1:-60083912 | MS.gene68264:CDS |
| TATCTTGGAACTCAGGAAGC+AGG | 0.492514 | 4.1:-60083897 | MS.gene68264:CDS |
| GATAGACACAATGGAGCAGC+TGG | 0.496318 | 4.1:-60085226 | MS.gene68264:CDS |
| ACGTTGCTTGTCCAATTACA+TGG | 0.496718 | 4.1:-60092471 | MS.gene68264:intron |
| ATAATGCAGAATGTTAGTAC+TGG | 0.497183 | 4.1:-60089631 | MS.gene68264:intron |
| GGGTTTCCGCGTTCTCTGAA+CGG | 0.498481 | 4.1:-60092293 | MS.gene68264:CDS |
| CGTGATGCTCTTCAGAGAAA+AGG | 0.498878 | 4.1:-60092059 | MS.gene68264:CDS |
| AAAAGTTGGTCTAATAATAG+AGG | 0.500565 | 4.1:-60090810 | MS.gene68264:intron |
| CTGGGAATGGACTAAGTGTC+AGG | 0.500974 | 4.1:-60089555 | MS.gene68264:intron |
| GTAAGTAACATGTAGATTTG+AGG | 0.501844 | 4.1:+60083937 | None:intergenic |
| GGAGCAGCTGGAGATATTGA+TGG | 0.502562 | 4.1:-60085214 | MS.gene68264:CDS |
| TCTTGTCCTGTCAATCAGAC+AGG | 0.503014 | 4.1:-60085892 | MS.gene68264:CDS |
| GTTGTAGTAAGAAGTACCAT+AGG | 0.505771 | 4.1:-60090842 | MS.gene68264:CDS |
| GAAGGTGCAAGTCAATCTCC+TGG | 0.506230 | 4.1:-60084539 | MS.gene68264:CDS |
| AAGATTTAATTACCAGCTTG+AGG | 0.507382 | 4.1:-60086284 | MS.gene68264:CDS |
| AGGCACAAGGGAGAGGTGAC+TGG | 0.507871 | 4.1:-60083974 | MS.gene68264:CDS |
| AGAGGAGAAGACCACTATCA+AGG | 0.508228 | 4.1:-60084657 | MS.gene68264:CDS |
| TTGCAGAACATGAACTTACT+GGG | 0.510009 | 4.1:+60089773 | None:intergenic |
| CCTCACAAATTCGGCAAGCT+CGG | 0.511046 | 4.1:+60090679 | None:intergenic |
| TCATGATTTATATTCTCTCC+AGG | 0.512210 | 4.1:+60084521 | None:intergenic |
| TGCTGCTATGATTGCTGCTG+AGG | 0.512543 | 4.1:-60092033 | MS.gene68264:CDS |
| GCAACAATTTCCGGCGGCGG+CGG | 0.514824 | 4.1:+60092149 | None:intergenic |
| AGATTTAATTACCAGCTTGA+GGG | 0.515066 | 4.1:-60086283 | MS.gene68264:CDS |
| ATCTAGGCTTGCAGAAGGAC+TGG | 0.515563 | 4.1:-60089800 | MS.gene68264:intron |
| ACCAGCTTGAGGGCTGCAGC+TGG | 0.516002 | 4.1:-60086273 | MS.gene68264:CDS |
| GCTGTGATCATTGCCAACGC+TGG | 0.517113 | 4.1:-60088405 | MS.gene68264:CDS |
| GAATCACTCTTTAACTTCAA+AGG | 0.517532 | 4.1:+60086189 | None:intergenic |
| TTCAACTTCACCTCTGGTAG+AGG | 0.517716 | 4.1:-60084959 | MS.gene68264:CDS |
| TTTGTCCAGGCACAAGGGAG+AGG | 0.519232 | 4.1:-60083981 | MS.gene68264:intron |
| TTAAAGGTTTACGGAAGAGA+AGG | 0.519410 | 4.1:-60085025 | MS.gene68264:CDS |
| CAAGATCTGGTTACTGCCAA+TGG | 0.520282 | 4.1:-60085637 | MS.gene68264:intron |
| AGTGGTGCCACCGCCGCCGC+CGG | 0.520952 | 4.1:-60092159 | MS.gene68264:CDS |
| CGGGGAAAACGTAATACTCA+TGG | 0.521412 | 4.1:-60084884 | MS.gene68264:CDS |
| CCATAATCATTCATCTTGGT+AGG | 0.524350 | 4.1:+60086120 | None:intergenic |
| ATGCAATCCCAGAGAAATGA+AGG | 0.526674 | 4.1:-60085970 | MS.gene68264:CDS |
| TCGACAAAAGACCTTTACAT+TGG | 0.526937 | 4.1:+60090926 | None:intergenic |
| AGTTGCGCATCCAATGTCCC+TGG | 0.528835 | 4.1:-60089574 | MS.gene68264:CDS |
| GTAGAGGCAATATGTTGGAT+GGG | 0.530094 | 4.1:-60084943 | MS.gene68264:CDS |
| TCAAAATTCTCATCAGGAAG+AGG | 0.530679 | 4.1:-60084675 | MS.gene68264:CDS |
| TGGTTATAAATTTGGGAGCA+CGG | 0.533503 | 4.1:-60085714 | MS.gene68264:CDS |
| GATTCACGGAAGGGAGAAGA+TGG | 0.535378 | 4.1:-60092209 | MS.gene68264:CDS |
| CTTCCAAAGAGATCAAGATC+TGG | 0.538529 | 4.1:-60085650 | MS.gene68264:CDS |
| ACAGCAACAATTTCCGGCGG+CGG | 0.541618 | 4.1:+60092146 | None:intergenic |
| CACTATGTCCTTCAAAACTA+CGG | 0.541662 | 4.1:+60086022 | None:intergenic |
| AAGTGAGTATCTTGGAACTC+AGG | 0.543351 | 4.1:-60083904 | MS.gene68264:CDS |
| GCATCCAATGTCCCTGGGAA+TGG | 0.543385 | 4.1:-60089568 | MS.gene68264:CDS |
| GACTCTGTGTCATTCATGAC+GGG | 0.544192 | 4.1:-60086060 | MS.gene68264:CDS |
| ACCGGTACCTTCAGACAGAC+AGG | 0.544303 | 4.1:+60088917 | None:intergenic |
| TTGAATTTAAATCTCAGTGA+AGG | 0.545895 | 4.1:+60084716 | None:intergenic |
| TAGTCCATTCCCAGGGACAT+TGG | 0.546556 | 4.1:+60089564 | None:intergenic |
| GGTAGAGGCAATATGTTGGA+TGG | 0.546772 | 4.1:-60084944 | MS.gene68264:CDS |
| TCAAGTTGCGGTGCCGAAAG+TGG | 0.549626 | 4.1:-60092177 | MS.gene68264:CDS |
| GCTGGAGATATTGATGGTAA+AGG | 0.550993 | 4.1:-60085208 | MS.gene68264:intron |
| ACCAGCTGCAGCCCTCAAGC+TGG | 0.551122 | 4.1:+60086272 | None:intergenic |
| TGATGGTCAGTGATGAAGAA+AGG | 0.551814 | 4.1:-60085840 | MS.gene68264:CDS |
| ATCACCAATTTCAAGTGGAT+GGG | 0.551981 | 4.1:-60086503 | MS.gene68264:CDS |
| ATGATGTGAGATCCCTCTAA+AGG | 0.552018 | 4.1:+60084908 | None:intergenic |
| CATGGAATGATCAACCAAGT+TGG | 0.552171 | 4.1:-60084866 | MS.gene68264:CDS |
| GAGGTGACTGGTGTAGTTGA+AGG | 0.554422 | 4.1:-60083962 | MS.gene68264:CDS |
| AAATTGGGAAGTGATGCAAT+TGG | 0.556017 | 4.1:-60084470 | MS.gene68264:CDS |
| CTGTGATCATTGCCAACGCT+GGG | 0.558570 | 4.1:-60088404 | MS.gene68264:CDS |
| GTGGAAGATTGTTTGTGAAA+GGG | 0.560028 | 4.1:-60088949 | MS.gene68264:CDS |
| CTCTGGTAGAGGCAATATGT+TGG | 0.560045 | 4.1:-60084948 | MS.gene68264:CDS |
| TGTGGAAGATTGTTTGTGAA+AGG | 0.560702 | 4.1:-60088950 | MS.gene68264:CDS |
| AATGTGAAGACATGTGATTA+TGG | 0.564014 | 4.1:+60084759 | None:intergenic |
| CGGAACGAAGAACGCGACGA+AGG | 0.567316 | 4.1:-60092273 | MS.gene68264:CDS |
| GAGGAGAAGACCACTATCAA+GGG | 0.567556 | 4.1:-60084656 | MS.gene68264:CDS |
| GCTTGAATCTGGCGATGTTG+TGG | 0.569400 | 4.1:-60091997 | MS.gene68264:intron |
| AGAGGGATCTCACATCATGC+GGG | 0.569444 | 4.1:-60084903 | MS.gene68264:CDS |
| ACGTTGCACCTAATCCAACT+TGG | 0.570960 | 4.1:+60084852 | None:intergenic |
| AATTTGCTGAGTGAATTTCT+CGG | 0.571145 | 4.1:-60092233 | MS.gene68264:CDS |
| ATTCTGACGATGAGGATAGC+GGG | 0.573927 | 4.1:-60086212 | MS.gene68264:CDS |
| GGATTAGGTGCAACGTCAAG+AGG | 0.575651 | 4.1:-60084845 | MS.gene68264:CDS |
| TATACATGTCCTACTTGTCG+TGG | 0.579175 | 4.1:-60086471 | MS.gene68264:CDS |
| ACAGGGGCAATCCAATGTAA+AGG | 0.579424 | 4.1:-60090937 | MS.gene68264:CDS |
| AAATTCAACCCATTTGACAA+AGG | 0.582014 | 4.1:-60085266 | MS.gene68264:CDS |
| AAGATATCACCAATTTCAAG+TGG | 0.584262 | 4.1:-60086508 | MS.gene68264:CDS |
| GTTGCTGTTAGCGGTGGTGG+TGG | 0.584403 | 4.1:-60092131 | MS.gene68264:CDS |
| ACTGGCAATGTACCCAGCGT+TGG | 0.587950 | 4.1:+60088392 | None:intergenic |
| ATCTTGGAACTCAGGAAGCA+GGG | 0.589506 | 4.1:-60083896 | MS.gene68264:CDS |
| TGGTGGAACGATTCAAGTTG+CGG | 0.592724 | 4.1:-60092189 | MS.gene68264:CDS |
| ATACATGTCCTACTTGTCGT+GGG | 0.593049 | 4.1:-60086470 | MS.gene68264:CDS |
| CTGACACTTAGTCCATTCCC+AGG | 0.595072 | 4.1:+60089556 | None:intergenic |
| TAGAGGCAATATGTTGGATG+GGG | 0.598934 | 4.1:-60084942 | MS.gene68264:CDS |
| GGACTCTGTGTCATTCATGA+CGG | 0.600709 | 4.1:-60086061 | MS.gene68264:CDS |
| TAATGCAGAATGTTAGTACT+GGG | 0.600736 | 4.1:-60089630 | MS.gene68264:intron |
| GAAACGTAAGTTTGTTGATG+AGG | 0.601471 | 4.1:-60085863 | MS.gene68264:CDS |
| ATTTCTCGGTGATTCACGGA+AGG | 0.603157 | 4.1:-60092219 | MS.gene68264:CDS |
| GAATATAAATCATGAGAACA+TGG | 0.604777 | 4.1:-60084513 | MS.gene68264:CDS |
| GCTTCATCTAGGCTTGCAGA+AGG | 0.606594 | 4.1:-60089805 | MS.gene68264:intron |
| GTTGCGCATCCAATGTCCCT+GGG | 0.607039 | 4.1:-60089573 | MS.gene68264:CDS |
| CCGAGCTTGCCGAATTTGTG+AGG | 0.607102 | 4.1:-60090679 | MS.gene68264:intron |
| CAATGATCACAGCAAACCAT+CGG | 0.607867 | 4.1:+60088415 | None:intergenic |
| TTACTGTCCTGTCTGTCTGA+AGG | 0.612168 | 4.1:-60088924 | MS.gene68264:intron |
| AGGCACTAACCAAGAATCAT+CGG | 0.613042 | 4.1:+60084421 | None:intergenic |
| AATCTTAATGGAGACGAACA+GGG | 0.615659 | 4.1:-60090954 | MS.gene68264:CDS |
| TCACGGAAGGGAGAAGATGG+TGG | 0.616640 | 4.1:-60092206 | MS.gene68264:CDS |
| CTTCCAGGTCAAGAATCTTG+AGG | 0.616861 | 4.1:-60086349 | MS.gene68264:intron |
| GAAATTGTTGCTGTTAGCGG+TGG | 0.617826 | 4.1:-60092137 | MS.gene68264:CDS |
| TTTCTCGGTGATTCACGGAA+GGG | 0.618805 | 4.1:-60092218 | MS.gene68264:CDS |
| TAAGTTTGTTGATGAGGTGA+TGG | 0.619624 | 4.1:-60085857 | MS.gene68264:CDS |
| AGTGAAGAGAGTGGAAAACG+TGG | 0.619742 | 4.1:-60085769 | MS.gene68264:CDS |
| TAGAGGGATCTCACATCATG+CGG | 0.619845 | 4.1:-60084904 | MS.gene68264:CDS |
| TGCAATCGTGTCGAGAACGA+AGG | 0.621522 | 4.1:-60090900 | MS.gene68264:CDS |
| ATGTTCTGCAAAAGATGTGA+TGG | 0.623740 | 4.1:-60089761 | MS.gene68264:CDS |
| TTGCTGCTGAGGAGTATGCT+AGG | 0.624374 | 4.1:-60092022 | MS.gene68264:CDS |
| TAACATTCCCCACGACAAGT+AGG | 0.631142 | 4.1:+60086462 | None:intergenic |
| AGATTCAGAGTCAACACCGA+TGG | 0.632016 | 4.1:-60088431 | MS.gene68264:CDS |
| TATTCTGACGATGAGGATAG+CGG | 0.633802 | 4.1:-60086213 | MS.gene68264:CDS |
| CTTGTCCTGTCAATCAGACA+GGG | 0.634402 | 4.1:-60085891 | MS.gene68264:CDS |
| TTCACCATATTCTGACGATG+AGG | 0.636007 | 4.1:-60086220 | MS.gene68264:CDS |
| TATTTGGCGAAGCAGTCAGA+AGG | 0.638353 | 4.1:-60084812 | MS.gene68264:CDS |
| TTTGCATTAGATAGACACAA+TGG | 0.643861 | 4.1:-60085235 | MS.gene68264:CDS |
| TCATTGTTTAATGACTCTGA+AGG | 0.648459 | 4.1:-60084590 | MS.gene68264:CDS |
| CAACATATTGCCTCTACCAG+AGG | 0.652907 | 4.1:+60084949 | None:intergenic |
| GAGGTTGCAGACAGTAACAA+TGG | 0.654117 | 4.1:+60089732 | None:intergenic |
| TTCGTTCCGTTCAGAGAACG+CGG | 0.654302 | 4.1:+60092287 | None:intergenic |
| ATCTTAATGGAGACGAACAG+GGG | 0.656304 | 4.1:-60090953 | MS.gene68264:CDS |
| TGACACTTAGTCCATTCCCA+GGG | 0.656715 | 4.1:+60089557 | None:intergenic |
| AGAGGCAATATGTTGGATGG+GGG | 0.663800 | 4.1:-60084941 | MS.gene68264:CDS |
| CTAACCTAATATCATCACAC+TGG | 0.667427 | 4.1:+60088374 | None:intergenic |
| TCATTGATTAATGACTCTGA+AGG | 0.668914 | 4.1:-60084557 | MS.gene68264:CDS |
| TACACGTGCTGTGATGCATG+TGG | 0.671444 | 4.1:-60088968 | MS.gene68264:CDS |
| GAGGGATCTCACATCATGCG+GGG | 0.683546 | 4.1:-60084902 | MS.gene68264:CDS |
| AAGTTGAATTCAGAAACACT+TGG | 0.688131 | 4.1:+60084974 | None:intergenic |
| CTGCTGAGGAGTATGCTAGG+AGG | 0.692798 | 4.1:-60092019 | MS.gene68264:CDS |
| ACAGACTCTACCTTATGAGG+AGG | 0.696642 | 4.1:+60089713 | None:intergenic |
| AAGCTTGCATTATCAGACAG+CGG | 0.699554 | 4.1:+60085670 | None:intergenic |
| TACATGTCCTACTTGTCGTG+GGG | 0.701115 | 4.1:-60086469 | MS.gene68264:CDS |
| AGACCACTATCAAGGGCCAG+AGG | 0.706908 | 4.1:-60084649 | MS.gene68264:CDS |
| CTAACAGCAACAATTTCCGG+CGG | 0.727273 | 4.1:+60092143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 60083853 | 60092503 | 60083853 | ID=MS.gene68264 |
| chr4.1 | mRNA | 60083853 | 60092503 | 60083853 | ID=MS.gene68264.t1;Parent=MS.gene68264 |
| chr4.1 | exon | 60092472 | 60092503 | 60092472 | ID=MS.gene68264.t1.exon1;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60092472 | 60092503 | 60092472 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60091998 | 60092340 | 60091998 | ID=MS.gene68264.t1.exon2;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60091998 | 60092340 | 60091998 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60090811 | 60090988 | 60090811 | ID=MS.gene68264.t1.exon3;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60090811 | 60090988 | 60090811 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60090680 | 60090729 | 60090680 | ID=MS.gene68264.t1.exon4;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60090680 | 60090729 | 60090680 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60089724 | 60089816 | 60089724 | ID=MS.gene68264.t1.exon5;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60089724 | 60089816 | 60089724 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60089556 | 60089644 | 60089556 | ID=MS.gene68264.t1.exon6;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60089556 | 60089644 | 60089556 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60088925 | 60089003 | 60088925 | ID=MS.gene68264.t1.exon7;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60088925 | 60089003 | 60088925 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60088379 | 60088461 | 60088379 | ID=MS.gene68264.t1.exon8;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60088379 | 60088461 | 60088379 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60086458 | 60086536 | 60086458 | ID=MS.gene68264.t1.exon9;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60086458 | 60086536 | 60086458 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60085638 | 60086364 | 60085638 | ID=MS.gene68264.t1.exon10;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60085638 | 60086364 | 60085638 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60085209 | 60085295 | 60085209 | ID=MS.gene68264.t1.exon11;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60085209 | 60085295 | 60085209 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60084431 | 60085079 | 60084431 | ID=MS.gene68264.t1.exon12;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60084431 | 60085079 | 60084431 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| chr4.1 | exon | 60083853 | 60083994 | 60083853 | ID=MS.gene68264.t1.exon13;Parent=MS.gene68264.t1 |
| chr4.1 | CDS | 60083853 | 60083994 | 60083853 | ID=cds.MS.gene68264.t1;Parent=MS.gene68264.t1 |
| Gene Sequence |
| Protein sequence |
