Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058537.t1 | XP_004492881.1 | 51.6 | 188 | 84 | 2 | 169 | 350 | 63 | 249 | 7.60E-39 | 171.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058537.t1 | A0A392PHL9 | 65.8 | 199 | 64 | 2 | 159 | 357 | 1 | 195 | 2.6e-65 | 258.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058537 | MS.gene061788 | -0.807482 | 4.95E-50 | -1.69E-46 |
| MS.gene058537 | MS.gene072196 | -0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene058537 | MS.gene23923 | -0.802068 | 6.68E-49 | -1.69E-46 |
| MS.gene058537 | MS.gene28067 | -0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene058537 | MS.gene34231 | -0.817323 | 3.50E-52 | -1.69E-46 |
| MS.gene058537 | MS.gene52860 | -0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene058537 | MS.gene57299 | -0.802561 | 5.29E-49 | -1.69E-46 |
| MS.gene058537 | MS.gene69067 | 0.982215 | 1.60E-154 | -1.69E-46 |
| MS.gene058537 | MS.gene69174 | -0.814583 | 1.43E-51 | -1.69E-46 |
| MS.gene058537 | MS.gene72219 | 0.96773 | 1.11E-127 | -1.69E-46 |
| MS.gene058537 | MS.gene89000 | -0.822451 | 2.35E-53 | -1.69E-46 |
| MS.gene058537 | MS.gene92871 | -0.800328 | 1.52E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058537.t1 | MTR_7g081150 | 42.063 | 126 | 64 | 2 | 225 | 350 | 206 | 322 | 8.37e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCAACCATTGTCTTTCT+TGG | 0.215242 | 7.4:-25737626 | MS.gene058537:CDS |
| ATTAGTCGGTGGACTTTCTA+TGG | 0.229945 | 7.4:-25737351 | MS.gene058537:CDS |
| CGTGGAACCTTTCGAGTATC+TGG | 0.232195 | 7.4:-25737994 | MS.gene058537:CDS |
| CATTTACAATCCATCTGTTT+AGG | 0.232337 | 7.4:-25738850 | MS.gene058537:CDS |
| AGTGATTTCCAGTGTGGTTT+TGG | 0.260198 | 7.4:-25737884 | MS.gene058537:CDS |
| TTCCAGGGAATGCTGTAAAA+TGG | 0.261175 | 7.4:+25737846 | None:intergenic |
| GACAATCGAATAAGCATTAC+AGG | 0.311358 | 7.4:-25737794 | MS.gene058537:CDS |
| TCTATGGGGTGGTATTGTTT+TGG | 0.319063 | 7.4:-25737335 | MS.gene058537:CDS |
| ATTTACAATCCATCTGTTTA+GGG | 0.327573 | 7.4:-25738849 | MS.gene058537:CDS |
| AAAGATTAGCTCAATATATA+AGG | 0.338961 | 7.4:-25738105 | MS.gene058537:CDS |
| GGGGAGGATGTGTTTACATT+TGG | 0.350400 | 7.4:-25739097 | MS.gene058537:CDS |
| TTTATTCATATCACTTCATT+TGG | 0.350430 | 7.4:+25737299 | None:intergenic |
| TTGGTATTTCCTACAACATA+TGG | 0.355189 | 7.4:-25737607 | MS.gene058537:CDS |
| AGAAAACTGAAATACAGTTT+TGG | 0.363010 | 7.4:-25738066 | MS.gene058537:CDS |
| GGGATTGGAAGCCTACTTCC+AGG | 0.368435 | 7.4:+25737830 | None:intergenic |
| TCTGTATGGTCGTCCTTGCT+TGG | 0.371823 | 7.4:-25737524 | MS.gene058537:CDS |
| TAATCTCAGGCTTCCTTTGA+AGG | 0.377343 | 7.4:+25739056 | None:intergenic |
| CTGGTTGTTCCATATGTTGT+AGG | 0.398848 | 7.4:+25737598 | None:intergenic |
| ATTCATATCACTTCATTTGG+TGG | 0.403378 | 7.4:+25737302 | None:intergenic |
| TGTTTGTGCCGTTGCTGTAA+TGG | 0.403814 | 7.4:-25737480 | MS.gene058537:CDS |
| CGGCGGATAATCTTCATTGT+AGG | 0.415373 | 7.4:+25739009 | None:intergenic |
| TGATTGAAGATGCATCAAAA+TGG | 0.426211 | 7.4:+25737403 | None:intergenic |
| TCGTCCTTGCTTGGGTTGTT+CGG | 0.428602 | 7.4:-25737515 | MS.gene058537:CDS |
| TCTTTCATTGCCCAAGGGAT+TGG | 0.428984 | 7.4:+25737815 | None:intergenic |
| CTGTATGGTCGTCCTTGCTT+GGG | 0.431533 | 7.4:-25737523 | MS.gene058537:CDS |
| CGTATTCGCCCTCGGAAAAC+CGG | 0.443085 | 7.4:-25738823 | MS.gene058537:CDS |
| GGACATGGATAATTGATAAC+TGG | 0.448053 | 7.4:+25737579 | None:intergenic |
| GATGCTGAAATACTTGCAAC+CGG | 0.452382 | 7.4:-25739118 | MS.gene058537:CDS |
| GCGAGTTTGATGAGAAGAAT+GGG | 0.460849 | 7.4:-25738144 | MS.gene058537:CDS |
| GTTGCTGTAATGGTTCTTGT+TGG | 0.464949 | 7.4:-25737470 | MS.gene058537:CDS |
| AATTTCAAAGCAACACCTAC+AGG | 0.465289 | 7.4:+25739154 | None:intergenic |
| TTAGTCGGTGGACTTTCTAT+GGG | 0.465952 | 7.4:-25737350 | MS.gene058537:CDS |
| GAAGTAGGCTTCCAATCCCT+TGG | 0.467360 | 7.4:-25737826 | MS.gene058537:CDS |
| AAAGGAAGCCTGAGATTACA+AGG | 0.475383 | 7.4:-25739051 | MS.gene058537:CDS |
| CCATTCTGTTCTTTGTGAAG+TGG | 0.480652 | 7.4:+25737554 | None:intergenic |
| TTGTAGGGAAAACTGTCATC+AGG | 0.481762 | 7.4:+25739025 | None:intergenic |
| GCAGCTCATTGTCATCCAGC+TGG | 0.484808 | 7.4:+25737759 | None:intergenic |
| GAAAACCGGTTGGACATTCA+AGG | 0.487357 | 7.4:-25738809 | MS.gene058537:intron |
| AGGAAACATGTTCACCCAGC+TGG | 0.490868 | 7.4:-25737774 | MS.gene058537:CDS |
| TTACAGCATTCCCTGGAAGT+AGG | 0.494539 | 7.4:-25737841 | MS.gene058537:CDS |
| GGCGAGTTTGATGAGAAGAA+TGG | 0.497291 | 7.4:-25738145 | MS.gene058537:CDS |
| GAAGTGTTTGTTACATTAGT+CGG | 0.497356 | 7.4:-25737365 | MS.gene058537:CDS |
| TCAGGAAACCTTGTAATCTC+AGG | 0.510173 | 7.4:+25739043 | None:intergenic |
| CGATTGTCTTTCATTGCCCA+AGG | 0.511834 | 7.4:+25737809 | None:intergenic |
| GGTATAGTCATGGTCAAACT+CGG | 0.513220 | 7.4:+25737706 | None:intergenic |
| CAAACTCGCCACGTAGGAGG+TGG | 0.513706 | 7.4:+25738158 | None:intergenic |
| GGCGGATAATCTTCATTGTA+GGG | 0.514262 | 7.4:+25739010 | None:intergenic |
| AGAATGGCCGCCTTTCTGTA+TGG | 0.519744 | 7.4:-25737538 | MS.gene058537:CDS |
| TTCTGTTCTTTGTGAAGTGG+CGG | 0.520068 | 7.4:+25737557 | None:intergenic |
| GCTTTCTGTATACTAGTGAA+TGG | 0.523901 | 7.4:+25737443 | None:intergenic |
| ACTCACCTTGAATGTCCAAC+CGG | 0.528662 | 7.4:+25738804 | None:intergenic |
| CTGTTTCACGTATCCTTCAA+AGG | 0.534026 | 7.4:-25739069 | MS.gene058537:CDS |
| TGGATGACAATGAGCTGCAT+TGG | 0.535155 | 7.4:-25737754 | MS.gene058537:CDS |
| CTTTGTGAAGTGGCGGGACA+TGG | 0.535677 | 7.4:+25737564 | None:intergenic |
| AATGCTGTAAAATGGTTTCG+TGG | 0.540864 | 7.4:+25737854 | None:intergenic |
| TCTGTTCTTTGTGAAGTGGC+GGG | 0.543395 | 7.4:+25737558 | None:intergenic |
| AAGTAGGCTTCCAATCCCTT+GGG | 0.548575 | 7.4:-25737825 | MS.gene058537:CDS |
| GTATAGTCATGGTCAAACTC+GGG | 0.560488 | 7.4:+25737707 | None:intergenic |
| TAGGGCCACGTATTCGCCCT+CGG | 0.561257 | 7.4:-25738831 | MS.gene058537:CDS |
| CAGATACTCGAAAGGTTCCA+CGG | 0.563159 | 7.4:+25737995 | None:intergenic |
| GTGGAACCTTTCGAGTATCT+GGG | 0.569477 | 7.4:-25737993 | MS.gene058537:intron |
| AATACGTGGCCCTAAACAGA+TGG | 0.571150 | 7.4:+25738840 | None:intergenic |
| TCGGTGGACTTTCTATGGGG+TGG | 0.576456 | 7.4:-25737346 | MS.gene058537:CDS |
| ATGCTGTAAAATGGTTTCGT+GGG | 0.580160 | 7.4:+25737855 | None:intergenic |
| CAGCTCATTGTCATCCAGCT+GGG | 0.585157 | 7.4:+25737760 | None:intergenic |
| GGCACTTTCCAAAACCACAC+TGG | 0.587089 | 7.4:+25737876 | None:intergenic |
| AAATGTAAACACATCCTCCC+CGG | 0.588798 | 7.4:+25739099 | None:intergenic |
| TTCGCCCTCGGAAAACCGGT+TGG | 0.588799 | 7.4:-25738819 | MS.gene058537:CDS |
| CATCAAACTCGCCACGTAGG+AGG | 0.596975 | 7.4:+25738155 | None:intergenic |
| TTACAATCAGCACATGCGTA+AGG | 0.601176 | 7.4:-25737678 | MS.gene058537:CDS |
| CTGCAGAGTGATTTCCAGTG+TGG | 0.609136 | 7.4:-25737890 | MS.gene058537:intron |
| AACAAGAACCATTACAGCAA+CGG | 0.610228 | 7.4:+25737472 | None:intergenic |
| ATGCTGAAATACTTGCAACC+GGG | 0.610321 | 7.4:-25739117 | MS.gene058537:CDS |
| GGAAATACCAAGAAAGACAA+TGG | 0.611367 | 7.4:+25737619 | None:intergenic |
| CCACTTCACAAAGAACAGAA+TGG | 0.620190 | 7.4:-25737554 | MS.gene058537:CDS |
| GTGTTTGTTACATTAGTCGG+TGG | 0.622983 | 7.4:-25737362 | MS.gene058537:CDS |
| CATGTGCTGATTGTAATCGT+AGG | 0.627777 | 7.4:+25737685 | None:intergenic |
| CTACAATGAAGATTATCCGC+CGG | 0.630707 | 7.4:-25739008 | MS.gene058537:intron |
| GATTGTCTTTCATTGCCCAA+GGG | 0.631392 | 7.4:+25737810 | None:intergenic |
| GCAAGGACGACCATACAGAA+AGG | 0.632075 | 7.4:+25737528 | None:intergenic |
| GGATTGGAAGCCTACTTCCA+GGG | 0.634042 | 7.4:+25737831 | None:intergenic |
| TGTAATCGTAGGTATAGTCA+TGG | 0.636595 | 7.4:+25737696 | None:intergenic |
| TGCTGAAATACTTGCAACCG+GGG | 0.637362 | 7.4:-25739116 | MS.gene058537:CDS |
| ATTTCAAAGCAACACCTACA+GGG | 0.647287 | 7.4:+25739155 | None:intergenic |
| AAAACCGAACAACCCAAGCA+AGG | 0.649732 | 7.4:+25737511 | None:intergenic |
| AACTTACCCAGATACTCGAA+AGG | 0.655831 | 7.4:+25737987 | None:intergenic |
| CGAGTTTGATGAGAAGAATG+GGG | 0.665142 | 7.4:-25738143 | MS.gene058537:CDS |
| CGTAGGAGGTGGGTTAAACG+AGG | 0.665859 | 7.4:+25738169 | None:intergenic |
| AAACTCGCCACGTAGGAGGT+GGG | 0.667000 | 7.4:+25738159 | None:intergenic |
| TAGTCGGTGGACTTTCTATG+GGG | 0.669112 | 7.4:-25737349 | MS.gene058537:CDS |
| ACTTCAGACTTCATCCCTGT+AGG | 0.673784 | 7.4:-25739169 | MS.gene058537:CDS |
| CGTTTAACCCACCTCCTACG+TGG | 0.674719 | 7.4:-25738166 | MS.gene058537:CDS |
| TGAAATACTTGCAACCGGGG+AGG | 0.691742 | 7.4:-25739113 | MS.gene058537:CDS |
| TATAGTCATGGTCAAACTCG+GGG | 0.696239 | 7.4:+25737708 | None:intergenic |
| AGGACGACCATACAGAAAGG+CGG | 0.698524 | 7.4:+25737531 | None:intergenic |
| AAAATGTTAGGAGTCGTCCG+TGG | 0.700444 | 7.4:-25738012 | MS.gene058537:CDS |
| TCTCATCAAACTCGCCACGT+AGG | 0.711118 | 7.4:+25738152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTCAAATAATTGAT+AGG | - | chr7.4:25738285-25738304 | MS.gene058537:intron | 10.0% |
| !!! | AAAACATTGAAAACTATTTT+AGG | + | chr7.4:25737812-25737831 | None:intergenic | 15.0% |
| !!! | TAAAATAGTTTTCAATGTTT+TGG | - | chr7.4:25737811-25737830 | MS.gene058537:CDS | 15.0% |
| !! | AAAAATAGAGGACAAAAATT+AGG | + | chr7.4:25737588-25737607 | None:intergenic | 20.0% |
| !! | ATTACTTGTACCTATATAAT+TGG | + | chr7.4:25738058-25738077 | None:intergenic | 20.0% |
| !!! | AAAGATTAGCTCAATATATA+AGG | - | chr7.4:25738380-25738399 | MS.gene058537:intron | 20.0% |
| !!! | TTTCCTTTTTCTTTTTAGTA+AGG | + | chr7.4:25738094-25738113 | None:intergenic | 20.0% |
| !!! | TTTTTTGATTACCATGTTAT+AGG | - | chr7.4:25737604-25737623 | MS.gene058537:CDS | 20.0% |
| ! | AAGAAAAAGGAAAACAGAAA+TGG | - | chr7.4:25738101-25738120 | MS.gene058537:CDS | 25.0% |
| ! | ATTAAGCTTAGTTAGATGTA+GGG | + | chr7.4:25737781-25737800 | None:intergenic | 25.0% |
| ! | ATTTACAATCCATCTGTTTA+GGG | - | chr7.4:25737636-25737655 | MS.gene058537:CDS | 25.0% |
| ! | CATGGTAATCAAAAAAATAG+AGG | + | chr7.4:25737600-25737619 | None:intergenic | 25.0% |
| ! | GTAAAAACATTATCAAGCAT+CGG | + | chr7.4:25738188-25738207 | None:intergenic | 25.0% |
| ! | TAGAAGAAAAACAGTTAGAA+TGG | + | chr7.4:25737522-25737541 | None:intergenic | 25.0% |
| ! | TATCTTGCTACAAAAATGTT+AGG | - | chr7.4:25738461-25738480 | MS.gene058537:intron | 25.0% |
| ! | TCACAATGAATCACAATATT+TGG | + | chr7.4:25737980-25737999 | None:intergenic | 25.0% |
| ! | TTCATTGTACTACTATTAGT+TGG | + | chr7.4:25738027-25738046 | None:intergenic | 25.0% |
| !! | AGAAAACTGAAATACAGTTT+TGG | - | chr7.4:25738419-25738438 | MS.gene058537:intron | 25.0% |
| AACAGTATATCAAATCAAGC+AGG | + | chr7.4:25737859-25737878 | None:intergenic | 30.0% | |
| ACAAAACCAACAAATGGTTT+GGG | + | chr7.4:25737757-25737776 | None:intergenic | 30.0% | |
| ACAGAGCAAATTAAGGATAA+TGG | + | chr7.4:25737548-25737567 | None:intergenic | 30.0% | |
| ACTTGTACCTATATAATTGG+TGG | + | chr7.4:25738055-25738074 | None:intergenic | 30.0% | |
| AGGCCTTACTAAAAAGAAAA+AGG | - | chr7.4:25738088-25738107 | MS.gene058537:CDS | 30.0% | |
| ATGTCTTCTTACCTATAACA+TGG | + | chr7.4:25737618-25737637 | None:intergenic | 30.0% | |
| CAAGATAACAGAGCAAATTA+AGG | + | chr7.4:25737555-25737574 | None:intergenic | 30.0% | |
| CATTAAGCTTAGTTAGATGT+AGG | + | chr7.4:25737782-25737801 | None:intergenic | 30.0% | |
| CATTTACAATCCATCTGTTT+AGG | - | chr7.4:25737635-25737654 | MS.gene058537:CDS | 30.0% | |
| TGATTGAAGATGCATCAAAA+TGG | + | chr7.4:25739085-25739104 | None:intergenic | 30.0% | |
| TGTACGAATTTGTGAAACTT+TGG | - | chr7.4:25737883-25737902 | MS.gene058537:CDS | 30.0% | |
| TTAAGCTTAGTTAGATGTAG+GGG | + | chr7.4:25737780-25737799 | None:intergenic | 30.0% | |
| TTGGTATTTCCTACAACATA+TGG | - | chr7.4:25738878-25738897 | MS.gene058537:intron | 30.0% | |
| ! | GAAAGCTATGCTTATCTTTT+TGG | - | chr7.4:25739059-25739078 | MS.gene058537:CDS | 30.0% |
| ! | GAAGTGTTTGTTACATTAGT+CGG | - | chr7.4:25739120-25739139 | MS.gene058537:CDS | 30.0% |
| !! | AACTGAAATACAGTTTTGGT+TGG | - | chr7.4:25738423-25738442 | MS.gene058537:intron | 30.0% |
| AACAAGAACCATTACAGCAA+CGG | + | chr7.4:25739016-25739035 | None:intergenic | 35.0% | |
| AACACGACCACCAATTATAT+AGG | - | chr7.4:25738045-25738064 | MS.gene058537:CDS | 35.0% | |
| AATGCTGTAAAATGGTTTCG+TGG | + | chr7.4:25738634-25738653 | None:intergenic | 35.0% | |
| AATTTCAAAGCAACACCTAC+AGG | + | chr7.4:25737334-25737353 | None:intergenic | 35.0% | |
| ATGCTGTAAAATGGTTTCGT+GGG | + | chr7.4:25738633-25738652 | None:intergenic | 35.0% | |
| ATTTCAAAGCAACACCTACA+GGG | + | chr7.4:25737333-25737352 | None:intergenic | 35.0% | |
| CAAAACCAACAAATGGTTTG+GGG | + | chr7.4:25737756-25737775 | None:intergenic | 35.0% | |
| GACAAAACCAACAAATGGTT+TGG | + | chr7.4:25737758-25737777 | None:intergenic | 35.0% | |
| GACAATCGAATAAGCATTAC+AGG | - | chr7.4:25738691-25738710 | MS.gene058537:intron | 35.0% | |
| GCTTTCTGTATACTAGTGAA+TGG | + | chr7.4:25739045-25739064 | None:intergenic | 35.0% | |
| GGAAATACCAAGAAAGACAA+TGG | + | chr7.4:25738869-25738888 | None:intergenic | 35.0% | |
| TACAAGTAATGAGCTAAGTG+AGG | - | chr7.4:25738068-25738087 | MS.gene058537:CDS | 35.0% | |
| TATATCAAATCAAGCAGGAG+TGG | + | chr7.4:25737854-25737873 | None:intergenic | 35.0% | |
| TATTGCGTATGGAGAAAGTT+TGG | + | chr7.4:25737720-25737739 | None:intergenic | 35.0% | |
| TGTAATCGTAGGTATAGTCA+TGG | + | chr7.4:25738792-25738811 | None:intergenic | 35.0% | |
| ! | GGACATGGATAATTGATAAC+TGG | + | chr7.4:25738909-25738928 | None:intergenic | 35.0% |
| AAAGGAAGCCTGAGATTACA+AGG | - | chr7.4:25737434-25737453 | MS.gene058537:CDS | 40.0% | |
| AAATGTAAACACATCCTCCC+CGG | + | chr7.4:25737389-25737408 | None:intergenic | 40.0% | |
| AACTTACCCAGATACTCGAA+AGG | + | chr7.4:25738501-25738520 | None:intergenic | 40.0% | |
| ATGCTGAAATACTTGCAACC+GGG | - | chr7.4:25737368-25737387 | MS.gene058537:CDS | 40.0% | |
| ATGTAAAGATGACAGCCTAC+CGG | + | chr7.4:25737499-25737518 | None:intergenic | 40.0% | |
| CCACTTCACAAAGAACAGAA+TGG | - | chr7.4:25738931-25738950 | MS.gene058537:intron | 40.0% | |
| CCATTCTGTTCTTTGTGAAG+TGG | + | chr7.4:25738934-25738953 | None:intergenic | 40.0% | |
| CGAGTTTGATGAGAAGAATG+GGG | - | chr7.4:25738342-25738361 | MS.gene058537:intron | 40.0% | |
| CGTATGGAGAAAGTTTGGTT+GGG | + | chr7.4:25737715-25737734 | None:intergenic | 40.0% | |
| CTACAATGAAGATTATCCGC+CGG | - | chr7.4:25737477-25737496 | MS.gene058537:CDS | 40.0% | |
| CTGGTTGTTCCATATGTTGT+AGG | + | chr7.4:25738890-25738909 | None:intergenic | 40.0% | |
| CTGTTTCACGTATCCTTCAA+AGG | - | chr7.4:25737416-25737435 | MS.gene058537:CDS | 40.0% | |
| GATGCTGAAATACTTGCAAC+CGG | - | chr7.4:25737367-25737386 | MS.gene058537:CDS | 40.0% | |
| GATTGTCTTTCATTGCCCAA+GGG | + | chr7.4:25738678-25738697 | None:intergenic | 40.0% | |
| GCGAGTTTGATGAGAAGAAT+GGG | - | chr7.4:25738341-25738360 | MS.gene058537:intron | 40.0% | |
| GGCGGATAATCTTCATTGTA+GGG | + | chr7.4:25737478-25737497 | None:intergenic | 40.0% | |
| GGTATAGTCATGGTCAAACT+CGG | + | chr7.4:25738782-25738801 | None:intergenic | 40.0% | |
| GTATAGTCATGGTCAAACTC+GGG | + | chr7.4:25738781-25738800 | None:intergenic | 40.0% | |
| GTCTCAACCATTGTCTTTCT+TGG | - | chr7.4:25738859-25738878 | MS.gene058537:CDS | 40.0% | |
| GTTGCTGTAATGGTTCTTGT+TGG | - | chr7.4:25739015-25739034 | MS.gene058537:CDS | 40.0% | |
| TAAAACTGCATAGCAGCAGT+GGG | + | chr7.4:25738143-25738162 | None:intergenic | 40.0% | |
| TAATCTCAGGCTTCCTTTGA+AGG | + | chr7.4:25737432-25737451 | None:intergenic | 40.0% | |
| TAGGGGACAAAACCAACAAA+TGG | + | chr7.4:25737763-25737782 | None:intergenic | 40.0% | |
| TATAGTCATGGTCAAACTCG+GGG | + | chr7.4:25738780-25738799 | None:intergenic | 40.0% | |
| TCAAACCCCAAACCATTTGT+TGG | - | chr7.4:25737748-25737767 | MS.gene058537:CDS | 40.0% | |
| TCAGGAAACCTTGTAATCTC+AGG | + | chr7.4:25737445-25737464 | None:intergenic | 40.0% | |
| TTAAAACTGCATAGCAGCAG+TGG | + | chr7.4:25738144-25738163 | None:intergenic | 40.0% | |
| TTACAATCAGCACATGCGTA+AGG | - | chr7.4:25738807-25738826 | MS.gene058537:intron | 40.0% | |
| TTCCAGGGAATGCTGTAAAA+TGG | + | chr7.4:25738642-25738661 | None:intergenic | 40.0% | |
| TTCTCCATACGCAATAGTCA+GGG | - | chr7.4:25737724-25737743 | MS.gene058537:CDS | 40.0% | |
| TTCTGTTCTTTGTGAAGTGG+CGG | + | chr7.4:25738931-25738950 | None:intergenic | 40.0% | |
| TTGTAGGGAAAACTGTCATC+AGG | + | chr7.4:25737463-25737482 | None:intergenic | 40.0% | |
| TTTCTCCATACGCAATAGTC+AGG | - | chr7.4:25737723-25737742 | MS.gene058537:CDS | 40.0% | |
| ! | AACCATTTTACAGCATTCCC+TGG | - | chr7.4:25738637-25738656 | MS.gene058537:intron | 40.0% |
| ! | AGTGATTTCCAGTGTGGTTT+TGG | - | chr7.4:25738601-25738620 | MS.gene058537:intron | 40.0% |
| ! | ATTAGTCGGTGGACTTTCTA+TGG | - | chr7.4:25739134-25739153 | MS.gene058537:CDS | 40.0% |
| ! | GTGTTTGTTACATTAGTCGG+TGG | - | chr7.4:25739123-25739142 | MS.gene058537:CDS | 40.0% |
| ! | TCTATGGGGTGGTATTGTTT+TGG | - | chr7.4:25739150-25739169 | MS.gene058537:CDS | 40.0% |
| ! | TTAGTCGGTGGACTTTCTAT+GGG | - | chr7.4:25739135-25739154 | MS.gene058537:CDS | 40.0% |
| !! | CATGTGCTGATTGTAATCGT+AGG | + | chr7.4:25738803-25738822 | None:intergenic | 40.0% |
| AAAACCGAACAACCCAAGCA+AGG | + | chr7.4:25738977-25738996 | None:intergenic | 45.0% | |
| AAAACTGCATAGCAGCAGTG+GGG | + | chr7.4:25738142-25738161 | None:intergenic | 45.0% | |
| AAAATGTTAGGAGTCGTCCG+TGG | - | chr7.4:25738473-25738492 | MS.gene058537:intron | 45.0% | |
| AAGTAGGCTTCCAATCCCTT+GGG | - | chr7.4:25738660-25738679 | MS.gene058537:intron | 45.0% | |
| AATACGTGGCCCTAAACAGA+TGG | + | chr7.4:25737648-25737667 | None:intergenic | 45.0% | |
| AATGAAGATTATCCGCCGGT+AGG | - | chr7.4:25737481-25737500 | MS.gene058537:CDS | 45.0% | |
| ACTCACCTTGAATGTCCAAC+CGG | + | chr7.4:25737684-25737703 | None:intergenic | 45.0% | |
| ACTTCAGACTTCATCCCTGT+AGG | - | chr7.4:25737316-25737335 | MS.gene058537:CDS | 45.0% | |
| CAGATACTCGAAAGGTTCCA+CGG | + | chr7.4:25738493-25738512 | None:intergenic | 45.0% | |
| CGATTGTCTTTCATTGCCCA+AGG | + | chr7.4:25738679-25738698 | None:intergenic | 45.0% | |
| CGGCGGATAATCTTCATTGT+AGG | + | chr7.4:25737479-25737498 | None:intergenic | 45.0% | |
| GAAAACCGGTTGGACATTCA+AGG | - | chr7.4:25737676-25737695 | MS.gene058537:CDS | 45.0% | |
| GCGTATGGAGAAAGTTTGGT+TGG | + | chr7.4:25737716-25737735 | None:intergenic | 45.0% | |
| GGCGAGTTTGATGAGAAGAA+TGG | - | chr7.4:25738340-25738359 | MS.gene058537:intron | 45.0% | |
| GGGGAGGATGTGTTTACATT+TGG | - | chr7.4:25737388-25737407 | MS.gene058537:CDS | 45.0% | |
| TCTGTTCTTTGTGAAGTGGC+GGG | + | chr7.4:25738930-25738949 | None:intergenic | 45.0% | |
| TCTTTCATTGCCCAAGGGAT+TGG | + | chr7.4:25738673-25738692 | None:intergenic | 45.0% | |
| TGATCCCTGACTATTGCGTA+TGG | + | chr7.4:25737731-25737750 | None:intergenic | 45.0% | |
| TGCTGAAATACTTGCAACCG+GGG | - | chr7.4:25737369-25737388 | MS.gene058537:CDS | 45.0% | |
| TGGATGACAATGAGCTGCAT+TGG | - | chr7.4:25738731-25738750 | MS.gene058537:intron | 45.0% | |
| TTACAGCATTCCCTGGAAGT+AGG | - | chr7.4:25738644-25738663 | MS.gene058537:intron | 45.0% | |
| ! | GGAGTGTTAGAAGGTAAGTG+AGG | + | chr7.4:25738167-25738186 | None:intergenic | 45.0% |
| ! | GTGGAACCTTTCGAGTATCT+GGG | - | chr7.4:25738492-25738511 | MS.gene058537:intron | 45.0% |
| ! | TAGTCGGTGGACTTTCTATG+GGG | - | chr7.4:25739136-25739155 | MS.gene058537:CDS | 45.0% |
| ! | TGTTTGTGCCGTTGCTGTAA+TGG | - | chr7.4:25739005-25739024 | MS.gene058537:intron | 45.0% |
| !! | TCAAGCATCGGAGTGTTAGA+AGG | + | chr7.4:25738176-25738195 | None:intergenic | 45.0% |
| AAACTGCATAGCAGCAGTGG+GGG | + | chr7.4:25738141-25738160 | None:intergenic | 50.0% | |
| AGAATGGCCGCCTTTCTGTA+TGG | - | chr7.4:25738947-25738966 | MS.gene058537:intron | 50.0% | |
| AGGAAACATGTTCACCCAGC+TGG | - | chr7.4:25738711-25738730 | MS.gene058537:intron | 50.0% | |
| AGGACGACCATACAGAAAGG+CGG | + | chr7.4:25738957-25738976 | None:intergenic | 50.0% | |
| CAGCTCATTGTCATCCAGCT+GGG | + | chr7.4:25738728-25738747 | None:intergenic | 50.0% | |
| CTGCAGAGTGATTTCCAGTG+TGG | - | chr7.4:25738595-25738614 | MS.gene058537:intron | 50.0% | |
| CTGTATGGTCGTCCTTGCTT+GGG | - | chr7.4:25738962-25738981 | MS.gene058537:intron | 50.0% | |
| GAAGTAGGCTTCCAATCCCT+TGG | - | chr7.4:25738659-25738678 | MS.gene058537:intron | 50.0% | |
| GCAAGGACGACCATACAGAA+AGG | + | chr7.4:25738960-25738979 | None:intergenic | 50.0% | |
| GGATTGGAAGCCTACTTCCA+GGG | + | chr7.4:25738657-25738676 | None:intergenic | 50.0% | |
| GGCACTTTCCAAAACCACAC+TGG | + | chr7.4:25738612-25738631 | None:intergenic | 50.0% | |
| TAAAGATGACAGCCTACCGG+CGG | + | chr7.4:25737496-25737515 | None:intergenic | 50.0% | |
| TCTCATCAAACTCGCCACGT+AGG | + | chr7.4:25738336-25738355 | None:intergenic | 50.0% | |
| TCTGTATGGTCGTCCTTGCT+TGG | - | chr7.4:25738961-25738980 | MS.gene058537:intron | 50.0% | |
| TGAAATACTTGCAACCGGGG+AGG | - | chr7.4:25737372-25737391 | MS.gene058537:CDS | 50.0% | |
| ! | CGTGGAACCTTTCGAGTATC+TGG | - | chr7.4:25738491-25738510 | MS.gene058537:intron | 50.0% |
| ! | TCGTCCTTGCTTGGGTTGTT+CGG | - | chr7.4:25738970-25738989 | MS.gene058537:intron | 50.0% |
| !! | AATGTCCAACCGGTTTTCCG+AGG | + | chr7.4:25737674-25737693 | None:intergenic | 50.0% |
| !! | ATGTCCAACCGGTTTTCCGA+GGG | + | chr7.4:25737673-25737692 | None:intergenic | 50.0% |
| AAACTCGCCACGTAGGAGGT+GGG | + | chr7.4:25738329-25738348 | None:intergenic | 55.0% | |
| AACTGCATAGCAGCAGTGGG+GGG | + | chr7.4:25738140-25738159 | None:intergenic | 55.0% | |
| CATCAAACTCGCCACGTAGG+AGG | + | chr7.4:25738333-25738352 | None:intergenic | 55.0% | |
| CGTATTCGCCCTCGGAAAAC+CGG | - | chr7.4:25737662-25737681 | MS.gene058537:CDS | 55.0% | |
| CGTTTAACCCACCTCCTACG+TGG | - | chr7.4:25738319-25738338 | MS.gene058537:intron | 55.0% | |
| GCAGCTCATTGTCATCCAGC+TGG | + | chr7.4:25738729-25738748 | None:intergenic | 55.0% | |
| GGGATTGGAAGCCTACTTCC+AGG | + | chr7.4:25738658-25738677 | None:intergenic | 55.0% | |
| ! | CTTTGTGAAGTGGCGGGACA+TGG | + | chr7.4:25738924-25738943 | None:intergenic | 55.0% |
| ! | GTTTTCCGAGGGCGAATACG+TGG | + | chr7.4:25737662-25737681 | None:intergenic | 55.0% |
| ! | TCGGTGGACTTTCTATGGGG+TGG | - | chr7.4:25739139-25739158 | MS.gene058537:CDS | 55.0% |
| !! | CGTAGGAGGTGGGTTAAACG+AGG | + | chr7.4:25738319-25738338 | None:intergenic | 55.0% |
| CAAACTCGCCACGTAGGAGG+TGG | + | chr7.4:25738330-25738349 | None:intergenic | 60.0% | |
| TAGGGCCACGTATTCGCCCT+CGG | - | chr7.4:25737654-25737673 | MS.gene058537:CDS | 60.0% | |
| TTCGCCCTCGGAAAACCGGT+TGG | - | chr7.4:25737666-25737685 | MS.gene058537:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 25737304 | 25739203 | 25737304 | ID=MS.gene058537 |
| chr7.4 | mRNA | 25737304 | 25739203 | 25737304 | ID=MS.gene058537.t1;Parent=MS.gene058537 |
| chr7.4 | exon | 25739009 | 25739203 | 25739009 | ID=MS.gene058537.t1.exon1;Parent=MS.gene058537.t1 |
| chr7.4 | CDS | 25739009 | 25739203 | 25739009 | ID=cds.MS.gene058537.t1;Parent=MS.gene058537.t1 |
| chr7.4 | exon | 25738810 | 25738881 | 25738810 | ID=MS.gene058537.t1.exon2;Parent=MS.gene058537.t1 |
| chr7.4 | CDS | 25738810 | 25738881 | 25738810 | ID=cds.MS.gene058537.t1;Parent=MS.gene058537.t1 |
| chr7.4 | exon | 25737994 | 25738200 | 25737994 | ID=MS.gene058537.t1.exon3;Parent=MS.gene058537.t1 |
| chr7.4 | CDS | 25737994 | 25738200 | 25737994 | ID=cds.MS.gene058537.t1;Parent=MS.gene058537.t1 |
| chr7.4 | exon | 25737304 | 25737906 | 25737304 | ID=MS.gene058537.t1.exon4;Parent=MS.gene058537.t1 |
| chr7.4 | CDS | 25737304 | 25737906 | 25737304 | ID=cds.MS.gene058537.t1;Parent=MS.gene058537.t1 |
| Gene Sequence |
| Protein sequence |
