AlfalfaGEDB | MS.gene34231

M. sativa cultivar XinJiangDaYe / MS.gene34231

KEGG: K02968
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0097159 GO:0110165 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01649.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34231.t1	XP_003628554.1	95.6	159	7	0	1	159	15	173	2.20E-70	275

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34231.t1	Q9ASV6	67.6	148	44	2	8	153	42	187	8.1e-42	171.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34231.t1	G7LDS2	95.6	159	7	0	1	159	15	173	1.6e-70	275.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049284	MS.gene34231	0.830278	3.21E-55	-1.69E-46
MS.gene049351	MS.gene34231	0.855604	5.64E-62	-1.69E-46
MS.gene049389	MS.gene34231	0.860158	2.51E-63	-1.69E-46
MS.gene049427	MS.gene34231	0.846684	1.86E-59	-1.69E-46
MS.gene049491	MS.gene34231	0.873975	9.69E-68	-1.69E-46
MS.gene049614	MS.gene34231	0.864433	1.22E-64	-1.69E-46
MS.gene049661	MS.gene34231	0.856377	3.35E-62	-1.69E-46
MS.gene049662	MS.gene34231	0.848129	7.46E-60	-1.69E-46
MS.gene049758	MS.gene34231	0.865805	4.52E-65	-1.69E-46
MS.gene049760	MS.gene34231	0.833606	4.84E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34231.t1	MTR_8g061350	95.597	159	7	0	1	159	15	173	4.81e-99	282

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34231.t1	AT3G15190	77.876	113	23	1	43	153	75	187	8.95e-57	176

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Find 42 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATAACATACCTTGTGAA+AGG	0.576623	8.4:-47615848	None:intergenic
AAGGCAGTAGAGATCCATCA+TGG	0.646488	8.4:+47617182	MS.gene34231:CDS
AATTGACAAAGCAGTGAAAG+TGG	0.540256	8.4:+47617103	MS.gene34231:CDS
AATTGAGAAGATGATTGGAG+AGG	0.673219	8.4:+47617070	MS.gene34231:CDS
AGACACTGGCTTGAGGCACA+GGG	0.582207	8.4:-47617214	None:intergenic
AGAGAGCTCGTCAGGCTGAG+AGG	0.604628	8.4:+47615943	MS.gene34231:CDS
AGCCTGACGAGCTCTCTTAA+TGG	0.465591	8.4:-47615937	None:intergenic
AGGATTCAGACACTGGCTTG+AGG	0.656971	8.4:-47617221	None:intergenic
AGGTATGTTATCTTTGAATA+CGG	0.445037	8.4:+47615857	MS.gene34231:CDS
ATATAAAAGGATTCAGACAC+TGG	0.591833	8.4:-47617228	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATAACATACCTTGTGAA+AGG	-	chr8.4:47615851-47615870	None:intergenic	30.0%
ATAGCTATTCTATGAAGAAC+TGG	-	chr8.4:47616157-47616176	None:intergenic	30.0%
CAGAAACTAGAACTAAAACA+TGG	-	chr8.4:47616677-47616696	None:intergenic	30.0%
CCTAACTTCATCATCAAATT+CGG	+	chr8.4:47615785-47615804	MS.gene34231:CDS	30.0%
CTAACTTCATCATCAAATTC+GGG	+	chr8.4:47615786-47615805	MS.gene34231:CDS	30.0%
TGACAATTCAACAGTTTAGA+AGG	+	chr8.4:47616643-47616662	MS.gene34231:intron	30.0%
TGCAAATAAAACTACACGTT+GGG	-	chr8.4:47616948-47616967	None:intergenic	30.0%
AAAAACAAGAACACAACACC+TGG	-	chr8.4:47616374-47616393	None:intergenic	35.0%
AAAACAAGAACACAACACCT+GGG	-	chr8.4:47616373-47616392	None:intergenic	35.0%
AACAATAAGAATCCCTGACA+TGG	+	chr8.4:47616834-47616853	MS.gene34231:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	47615771	47617238	47615771	ID=MS.gene34231
chr8.4	mRNA	47615771	47617238	47615771	ID=MS.gene34231.t1;Parent=MS.gene34231
chr8.4	exon	47615771	47616019	47615771	ID=MS.gene34231.t1.exon1;Parent=MS.gene34231.t1
chr8.4	CDS	47615771	47616019	47615771	ID=cds.MS.gene34231.t1;Parent=MS.gene34231.t1
chr8.4	exon	47617008	47617238	47617008	ID=MS.gene34231.t1.exon2;Parent=MS.gene34231.t1
chr8.4	CDS	47617008	47617238	47617008	ID=cds.MS.gene34231.t1;Parent=MS.gene34231.t1

Gene Sequence

>MS.gene34231

ATGAGGAACCTTACCCTAACTTCATCATCAAATTCGGGTTCTCTAAGTTTCTCCCGAAACATTTCCCAGTCTAGAGTCCTTTCACAAGGTATGTTATCTTTGAATACGGTGCAGAAGCGTGGTGTTGTTGTTGTTTGCGAGGCTGCTCCAAAGAAGGTTGATTCCGCCATTAAGAGAGCTCGTCAGGCTGAGAGGCGTCGCGTTTACAACAAAGCTCGTAAATCCGAGATTAGAACCCGTACCAAGAAGGTACCGTAACTGTAACTTGAACTATTTTATTTTTGATTACTATATCATAGCTATGTCATTTTCTCAAATTATTATTGGTGTCGGCATGTTGGTGTTGGTTGGTGCCAGTGTTGTGTCCGGTGTCTGTGTTTGTGCCAGTTCTTCATAGAATAGCTATAATAACATGGTTTTAACTTTTAAGCGTCTTTTAACATGAAATGTTATGTGTGCTTGAAAATTGATTCCATAGCTTTAGGGATTAGAGGGAAGTTTGAGTAACATGGTTTTCCTTCGCTCAAGTTATATAATTATTCGCCATTGTCATCACCCAATTTCATCTTGAAAACATGATTTGTATTTTAGGTGTCAGACCCAGGTGTTGTGTTCTTGTTTTTGTTATAGAGTGATGTTAATCATAATCATAATCACCCATAATGTGTAACTCATATAACATTCCTTGAGAATATTTGGACCATTGATAATATGCAAGAAAAGGGAGTGAAAGAGAAATAGATGATAATATGATGGAGTATGGGATAGTGGGAGAGAAAATGGAAAATGTTATGCCGAAGCAACATTTTCTGATGATTGTTTCAAGTTACTGAACCCTGGAGGCGCAAATTAGGTGGTACTGGAAACATGTTTGACAATTCAACAGTTTAGAAGGAGAAGTGTCCATGTTTTAGTTCTAGTTTCTGACGATTATATACGATAATAATATTTTAGTGTGACTGTTGATGTAATATACTATGATAGTGCTTTTCTAAGTCAAATTGTTATACAATTAATATTGAATTTAAAAATGAGTTCACCTGTAAGATAATGAAACTCCACAAACAATAAGAATCCCTGACATGGTAGCTGATGTTATAATTGCAGGTGCTTATACTGATTATTCTTGTCAAAACTCAAGTTAACATGAATTGTTATTATCTATACAACCAACCCCAACGTGTAGTTTTATTTGCAGGAATGATTTTTTAGTTATCTTACTTTCAATTGTTTGTAGGTTTTGGAAGCACTGGAGTTGCTTAAAAAGAAATCTGATGCACAAGCAGAAGAAATTGCCTCAATTGAGAAGATGATTGGAGAGGCATACTCTATAATTGACAAAGCAGTGAAAGTGGGAACTTTGCATAGAAACACAGGAGCAAATCGCAAGTCTCGGCTTGCCAGAAGAAAGAAGGCAGTAGAGATCCATCATGGCTGGTATGCCCCTGTGCCTCAAGCCAGTGTCTGA

Protein sequence

>MS.gene34231.t1

MRNLTLTSSSNSGSLSFSRNISQSRVLSQGMLSLNTVQKRGVVVVCEAAPKKVDSAIKRARQAERRRVYNKARKSEIRTRTKKVLEALELLKKKSDAQAEEIASIEKMIGEAYSIIDKAVKVGTLHRNTGANRKSRLARRKKAVEIHHGWYAPVPQASV