Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52860.t1 | XP_013451947.1 | 96.7 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 3.50E-201 | 710.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52860.t1 | Q9SZ83 | 63.2 | 359 | 132 | 0 | 1 | 359 | 1 | 359 | 3.1e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52860.t1 | A0A072UJH2 | 96.7 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 2.5e-201 | 710.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene52860 | 0.805271 | 1.45E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene52860 | 0.86997 | 2.08E-66 | -1.69E-46 |
| MS.gene049356 | MS.gene52860 | 0.804514 | 2.08E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene52860 | 0.801591 | 8.38E-49 | -1.69E-46 |
| MS.gene049389 | MS.gene52860 | 0.829503 | 4.96E-55 | -1.69E-46 |
| MS.gene049427 | MS.gene52860 | 0.841942 | 3.50E-58 | -1.69E-46 |
| MS.gene049491 | MS.gene52860 | 0.864779 | 9.51E-65 | -1.69E-46 |
| MS.gene049614 | MS.gene52860 | 0.81632 | 5.88E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene52860 | 0.840728 | 7.30E-58 | -1.69E-46 |
| MS.gene049662 | MS.gene52860 | 0.84216 | 3.06E-58 | -1.69E-46 |
| MS.gene049758 | MS.gene52860 | 0.845596 | 3.68E-59 | -1.69E-46 |
| MS.gene050076 | MS.gene52860 | 0.846433 | 2.18E-59 | -1.69E-46 |
| MS.gene050099 | MS.gene52860 | 0.843689 | 1.20E-58 | -1.69E-46 |
| MS.gene050128 | MS.gene52860 | 0.829236 | 5.76E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene52860 | 0.893416 | 6.42E-75 | -1.69E-46 |
| MS.gene050397 | MS.gene52860 | 0.83183 | 1.34E-55 | -1.69E-46 |
| MS.gene050432 | MS.gene52860 | 0.85372 | 1.98E-61 | -1.69E-46 |
| MS.gene050529 | MS.gene52860 | 0.820963 | 5.19E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene52860 | 0.819514 | 1.12E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene52860 | 0.850683 | 1.45E-60 | -1.69E-46 |
| MS.gene050770 | MS.gene52860 | 0.852155 | 5.56E-61 | -1.69E-46 |
| MS.gene050783 | MS.gene52860 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene050812 | MS.gene52860 | 0.819631 | 1.05E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene52860 | 0.882255 | 1.21E-70 | -1.69E-46 |
| MS.gene05105 | MS.gene52860 | 0.825083 | 5.69E-54 | -1.69E-46 |
| MS.gene051255 | MS.gene52860 | 0.836006 | 1.21E-56 | -1.69E-46 |
| MS.gene051360 | MS.gene52860 | 0.827811 | 1.27E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene52860 | 0.813106 | 3.03E-51 | -1.69E-46 |
| MS.gene051471 | MS.gene52860 | 0.84286 | 2.00E-58 | -1.69E-46 |
| MS.gene051663 | MS.gene52860 | 0.804138 | 2.49E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene52860 | 0.832766 | 7.84E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene52860 | 0.801991 | 6.94E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene52860 | 0.820216 | 7.71E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene52860 | 0.865719 | 4.82E-65 | -1.69E-46 |
| MS.gene052178 | MS.gene52860 | 0.843993 | 9.95E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene52860 | 0.874855 | 4.87E-68 | -1.69E-46 |
| MS.gene052207 | MS.gene52860 | 0.818065 | 2.38E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene52860 | 0.812396 | 4.33E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene52860 | 0.801165 | 1.02E-48 | -1.69E-46 |
| MS.gene052287 | MS.gene52860 | 0.841783 | 3.85E-58 | -1.69E-46 |
| MS.gene052290 | MS.gene52860 | 0.810679 | 1.02E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene52860 | 0.864916 | 8.61E-65 | -1.69E-46 |
| MS.gene052322 | MS.gene52860 | 0.833897 | 4.10E-56 | -1.69E-46 |
| MS.gene052326 | MS.gene52860 | 0.866108 | 3.63E-65 | -1.69E-46 |
| MS.gene052340 | MS.gene52860 | 0.849048 | 4.15E-60 | -1.69E-46 |
| MS.gene052379 | MS.gene52860 | 0.801679 | 8.03E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene52860 | 0.813552 | 2.42E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene52860 | 0.836228 | 1.06E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene52860 | 0.850271 | 1.89E-60 | -1.69E-46 |
| MS.gene053103 | MS.gene52860 | 0.814924 | 1.20E-51 | -1.69E-46 |
| MS.gene053104 | MS.gene52860 | 0.805799 | 1.12E-49 | -1.69E-46 |
| MS.gene053181 | MS.gene52860 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene52860 | 0.878246 | 3.28E-69 | -1.69E-46 |
| MS.gene053322 | MS.gene52860 | 0.852033 | 6.02E-61 | -1.69E-46 |
| MS.gene053384 | MS.gene52860 | 0.802546 | 5.33E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene52860 | 0.833208 | 6.09E-56 | -1.69E-46 |
| MS.gene053813 | MS.gene52860 | 0.808518 | 2.98E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene52860 | 0.84473 | 6.31E-59 | -1.69E-46 |
| MS.gene054010 | MS.gene52860 | 0.810265 | 1.26E-50 | -1.69E-46 |
| MS.gene054012 | MS.gene52860 | 0.804945 | 1.69E-49 | -1.69E-46 |
| MS.gene054013 | MS.gene52860 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene52860 | 0.860322 | 2.24E-63 | -1.69E-46 |
| MS.gene054376 | MS.gene52860 | 0.859801 | 3.22E-63 | -1.69E-46 |
| MS.gene05455 | MS.gene52860 | 0.847527 | 1.09E-59 | -1.69E-46 |
| MS.gene054802 | MS.gene52860 | 0.837053 | 6.52E-57 | -1.69E-46 |
| MS.gene054803 | MS.gene52860 | 0.839994 | 1.14E-57 | -1.69E-46 |
| MS.gene054804 | MS.gene52860 | 0.8378 | 4.20E-57 | -1.69E-46 |
| MS.gene054955 | MS.gene52860 | 0.804285 | 2.32E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene52860 | 0.832835 | 7.53E-56 | -1.69E-46 |
| MS.gene055254 | MS.gene52860 | 0.808909 | 2.46E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene52860 | 0.889449 | 2.40E-73 | -1.69E-46 |
| MS.gene055390 | MS.gene52860 | 0.892129 | 2.11E-74 | -1.69E-46 |
| MS.gene055397 | MS.gene52860 | 0.817052 | 4.03E-52 | -1.69E-46 |
| MS.gene055412 | MS.gene52860 | 0.841358 | 4.99E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene52860 | 0.861066 | 1.33E-63 | -1.69E-46 |
| MS.gene055428 | MS.gene52860 | 0.856763 | 2.58E-62 | -1.69E-46 |
| MS.gene055499 | MS.gene52860 | 0.837561 | 4.83E-57 | -1.69E-46 |
| MS.gene055604 | MS.gene52860 | 0.822069 | 2.89E-53 | -1.69E-46 |
| MS.gene055633 | MS.gene52860 | 0.810885 | 9.23E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene52860 | 0.821538 | 3.83E-53 | -1.69E-46 |
| MS.gene055712 | MS.gene52860 | 0.802813 | 4.69E-49 | -1.69E-46 |
| MS.gene055896 | MS.gene52860 | 0.804251 | 2.36E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene52860 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene52860 | 0.860359 | 2.18E-63 | -1.69E-46 |
| MS.gene056407 | MS.gene52860 | 0.842241 | 2.92E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene52860 | 0.889596 | 2.10E-73 | -1.69E-46 |
| MS.gene056452 | MS.gene52860 | 0.80253 | 5.37E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene52860 | 0.866505 | 2.72E-65 | -1.69E-46 |
| MS.gene056611 | MS.gene52860 | 0.816805 | 4.58E-52 | -1.69E-46 |
| MS.gene056612 | MS.gene52860 | 0.834978 | 2.19E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene52860 | 0.859359 | 4.37E-63 | -1.69E-46 |
| MS.gene056897 | MS.gene52860 | 0.812982 | 3.22E-51 | -1.69E-46 |
| MS.gene056931 | MS.gene52860 | 0.844083 | 9.41E-59 | -1.69E-46 |
| MS.gene056933 | MS.gene52860 | 0.840382 | 8.99E-58 | -1.69E-46 |
| MS.gene056935 | MS.gene52860 | 0.837564 | 4.83E-57 | -1.69E-46 |
| MS.gene057011 | MS.gene52860 | 0.83361 | 4.83E-56 | -1.69E-46 |
| MS.gene05702 | MS.gene52860 | 0.838626 | 2.57E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene52860 | 0.814042 | 1.88E-51 | -1.69E-46 |
| MS.gene057123 | MS.gene52860 | 0.822217 | 2.67E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene52860 | 0.810457 | 1.14E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene52860 | 0.824778 | 6.71E-54 | -1.69E-46 |
| MS.gene057146 | MS.gene52860 | 0.820829 | 5.58E-53 | -1.69E-46 |
| MS.gene057245 | MS.gene52860 | 0.803895 | 2.80E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene52860 | 0.840075 | 1.08E-57 | -1.69E-46 |
| MS.gene05733 | MS.gene52860 | 0.856161 | 3.88E-62 | -1.69E-46 |
| MS.gene057439 | MS.gene52860 | 0.802497 | 5.46E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene52860 | 0.842188 | 3.01E-58 | -1.69E-46 |
| MS.gene057449 | MS.gene52860 | 0.838976 | 2.09E-57 | -1.69E-46 |
| MS.gene057450 | MS.gene52860 | 0.848519 | 5.82E-60 | -1.69E-46 |
| MS.gene057749 | MS.gene52860 | 0.821562 | 3.78E-53 | -1.69E-46 |
| MS.gene057796 | MS.gene52860 | 0.819924 | 8.99E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene52860 | 0.820864 | 5.48E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene52860 | 0.863121 | 3.12E-64 | -1.69E-46 |
| MS.gene058006 | MS.gene52860 | 0.806688 | 7.29E-50 | -1.69E-46 |
| MS.gene05806 | MS.gene52860 | 0.808251 | 3.40E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene52860 | 0.869371 | 3.25E-66 | -1.69E-46 |
| MS.gene05811 | MS.gene52860 | 0.877042 | 8.63E-69 | -1.69E-46 |
| MS.gene058233 | MS.gene52860 | 0.829416 | 5.21E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene52860 | 0.866002 | 3.92E-65 | -1.69E-46 |
| MS.gene058365 | MS.gene52860 | 0.837201 | 5.98E-57 | -1.69E-46 |
| MS.gene05842 | MS.gene52860 | 0.808356 | 3.22E-50 | -1.69E-46 |
| MS.gene058537 | MS.gene52860 | -0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene52860 | 0.89022 | 1.20E-73 | -1.69E-46 |
| MS.gene058787 | MS.gene52860 | 0.847235 | 1.32E-59 | -1.69E-46 |
| MS.gene058845 | MS.gene52860 | 0.82488 | 6.35E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene52860 | 0.829716 | 4.41E-55 | -1.69E-46 |
| MS.gene058993 | MS.gene52860 | 0.823668 | 1.22E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene52860 | 0.870148 | 1.82E-66 | -1.69E-46 |
| MS.gene059294 | MS.gene52860 | 0.822476 | 2.32E-53 | -1.69E-46 |
| MS.gene059326 | MS.gene52860 | 0.832851 | 7.47E-56 | -1.69E-46 |
| MS.gene059342 | MS.gene52860 | 0.833617 | 4.81E-56 | -1.69E-46 |
| MS.gene059518 | MS.gene52860 | 0.852897 | 3.41E-61 | -1.69E-46 |
| MS.gene059536 | MS.gene52860 | 0.857894 | 1.20E-62 | -1.69E-46 |
| MS.gene059597 | MS.gene52860 | 0.875451 | 3.05E-68 | -1.69E-46 |
| MS.gene05959 | MS.gene52860 | 0.823587 | 1.28E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene52860 | 0.8886 | 5.11E-73 | -1.69E-46 |
| MS.gene059688 | MS.gene52860 | 0.87884 | 2.03E-69 | -1.69E-46 |
| MS.gene059692 | MS.gene52860 | 0.887318 | 1.59E-72 | -1.69E-46 |
| MS.gene059695 | MS.gene52860 | 0.888138 | 7.70E-73 | -1.69E-46 |
| MS.gene059708 | MS.gene52860 | 0.841585 | 4.35E-58 | -1.69E-46 |
| MS.gene059711 | MS.gene52860 | 0.815325 | 9.80E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene52860 | 0.840404 | 8.88E-58 | -1.69E-46 |
| MS.gene059894 | MS.gene52860 | 0.861932 | 7.25E-64 | -1.69E-46 |
| MS.gene059960 | MS.gene52860 | 0.856165 | 3.87E-62 | -1.69E-46 |
| MS.gene059974 | MS.gene52860 | 0.839828 | 1.25E-57 | -1.69E-46 |
| MS.gene060005 | MS.gene52860 | 0.839538 | 1.49E-57 | -1.69E-46 |
| MS.gene060193 | MS.gene52860 | 0.803913 | 2.78E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene52860 | 0.8478 | 9.20E-60 | -1.69E-46 |
| MS.gene060403 | MS.gene52860 | 0.813965 | 1.96E-51 | -1.69E-46 |
| MS.gene060407 | MS.gene52860 | 0.820772 | 5.75E-53 | -1.69E-46 |
| MS.gene060559 | MS.gene52860 | 0.845789 | 3.26E-59 | -1.69E-46 |
| MS.gene060800 | MS.gene52860 | 0.800515 | 1.39E-48 | -1.69E-46 |
| MS.gene060804 | MS.gene52860 | 0.837039 | 6.57E-57 | -1.69E-46 |
| MS.gene060818 | MS.gene52860 | 0.826651 | 2.41E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene52860 | 0.817731 | 2.83E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene52860 | 0.85262 | 4.10E-61 | -1.69E-46 |
| MS.gene061051 | MS.gene52860 | -0.852702 | 3.88E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene52860 | 0.858501 | 7.89E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52860.t1 | MTR_6g038640 | 96.676 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 0.0 | 723 |
| MS.gene52860.t1 | MTR_6g038650 | 93.075 | 361 | 20 | 2 | 1 | 361 | 1 | 356 | 0.0 | 688 |
| MS.gene52860.t1 | MTR_1g097250 | 69.859 | 355 | 107 | 0 | 7 | 361 | 6 | 360 | 0.0 | 530 |
| MS.gene52860.t1 | MTR_6g038390 | 62.291 | 358 | 135 | 0 | 3 | 360 | 5 | 362 | 1.53e-174 | 489 |
| MS.gene52860.t1 | MTR_6g038350 | 63.687 | 358 | 130 | 0 | 3 | 360 | 5 | 362 | 1.87e-168 | 474 |
| MS.gene52860.t1 | MTR_6g038370 | 63.687 | 358 | 130 | 0 | 3 | 360 | 5 | 362 | 1.87e-168 | 474 |
| MS.gene52860.t1 | MTR_6g066230 | 54.821 | 363 | 159 | 2 | 1 | 359 | 1 | 362 | 5.27e-148 | 422 |
| MS.gene52860.t1 | MTR_3g064900 | 54.270 | 363 | 162 | 2 | 1 | 359 | 1 | 363 | 2.59e-140 | 403 |
| MS.gene52860.t1 | MTR_6g038310 | 63.934 | 122 | 43 | 1 | 3 | 123 | 5 | 126 | 2.30e-42 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52860.t1 | AT4G09670 | 63.231 | 359 | 132 | 0 | 1 | 359 | 1 | 359 | 2.17e-179 | 502 |
| MS.gene52860.t1 | AT1G34200 | 56.983 | 358 | 142 | 2 | 1 | 357 | 1 | 347 | 2.17e-148 | 423 |
| MS.gene52860.t1 | AT1G66130 | 43.207 | 368 | 196 | 7 | 1 | 359 | 1 | 364 | 7.59e-97 | 292 |
Find 98 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGAAAACACAACTGATTT+TGG | 0.144870 | 6.1:+20445741 | MS.gene52860:CDS |
| ATCATAGGAGCCGTAGATTT+TGG | 0.215038 | 6.1:-20442233 | None:intergenic |
| GGAATGTGGGGTGCAGTTTA+TGG | 0.217349 | 6.1:+20442420 | MS.gene52860:CDS |
| CCCTTCATCACCTCCGTTCT+AGG | 0.227507 | 6.1:-20442466 | None:intergenic |
| CCAATCCGTTTCGGCATTCT+CGG | 0.279201 | 6.1:+20442079 | MS.gene52860:CDS |
| CTTGTGGCGCTTCTTTATAT+TGG | 0.296195 | 6.1:+20445404 | MS.gene52860:CDS |
| CAGCAGTTATATCCATTGTT+AGG | 0.316283 | 6.1:-20445471 | None:intergenic |
| TTGATGATCTTGTCACTAGA+TGG | 0.323932 | 6.1:+20445584 | MS.gene52860:CDS |
| TCTCCCTCAGGAGGCTCTTA+TGG | 0.328360 | 6.1:+20445642 | MS.gene52860:CDS |
| TGGAGGATGAGGAGAGGTTT+GGG | 0.333190 | 6.1:+20442494 | MS.gene52860:CDS |
| TTGGAGGATGAGGAGAGGTT+TGG | 0.340484 | 6.1:+20442493 | MS.gene52860:CDS |
| CTCGACGCTCTTGGCTCTCT+TGG | 0.345356 | 6.1:+20445268 | MS.gene52860:CDS |
| TGCCACCAAATGAGAAAATT+CGG | 0.346134 | 6.1:-20445668 | None:intergenic |
| TTGTGGCGCTTCTTTATATT+GGG | 0.348945 | 6.1:+20445405 | MS.gene52860:CDS |
| ACGTAAACAGCATCAACATT+AGG | 0.358563 | 6.1:-20442271 | None:intergenic |
| CGACGACGTTGCATGTGAAA+TGG | 0.359695 | 6.1:+20442302 | MS.gene52860:CDS |
| GAGCCAAGAGCGTCGAGATC+TGG | 0.364195 | 6.1:-20445262 | None:intergenic |
| ACGCGAAACCGGAGAAGAAA+TGG | 0.375990 | 6.1:+20445707 | MS.gene52860:CDS |
| GGCGGTGGCTGCGGCGAAGA+AGG | 0.379367 | 6.1:+20442324 | MS.gene52860:CDS |
| ATTCACACCTGCTTTACATT+TGG | 0.392125 | 6.1:+20445199 | MS.gene52860:CDS |
| CGTGAAGGCTTCGATTGATA+AGG | 0.397262 | 6.1:+20445768 | MS.gene52860:CDS |
| ATGTCGTTCTCGAGAAAATC+AGG | 0.401057 | 6.1:-20445229 | None:intergenic |
| ATAACTGCTGTTGGGACAAA+AGG | 0.403721 | 6.1:+20445484 | MS.gene52860:CDS |
| TGATGATCTTGTCACTAGAT+GGG | 0.427776 | 6.1:+20445585 | MS.gene52860:CDS |
| GCGGCTTCCGACGGCGGAGA+TGG | 0.428663 | 6.1:-20442158 | None:intergenic |
| GTGAAGGCTTCGATTGATAA+GGG | 0.430595 | 6.1:+20445769 | MS.gene52860:CDS |
| AAGCCAGATCTCGACGCTCT+TGG | 0.439470 | 6.1:+20445259 | MS.gene52860:CDS |
| GTTTGCGAAGGTGGTTGCTT+TGG | 0.442057 | 6.1:-20442188 | None:intergenic |
| CGTAAACAGCATCAACATTA+GGG | 0.444017 | 6.1:-20442270 | None:intergenic |
| GCGGTGGCTGCGGCGAAGAA+GGG | 0.444964 | 6.1:+20442325 | MS.gene52860:CDS |
| ATAGTCGGCCATTTCTTCTC+CGG | 0.455501 | 6.1:-20445715 | None:intergenic |
| TCCTAGAACGGAGGTGATGA+AGG | 0.459813 | 6.1:+20442465 | MS.gene52860:CDS |
| TGTGAAATGGGCGGTGGCTG+CGG | 0.466954 | 6.1:+20442315 | MS.gene52860:CDS |
| TGAAGGTGTGTGAGGAATGT+GGG | 0.467660 | 6.1:+20442407 | MS.gene52860:CDS |
| CTTATCAATCGAAGCCTTCA+CGG | 0.476737 | 6.1:-20445767 | None:intergenic |
| CCGAGAATGCCGAAACGGAT+TGG | 0.477746 | 6.1:-20442079 | None:intergenic |
| GAATGGCGCGTGAGAGTTTG+CGG | 0.478095 | 6.1:-20442117 | None:intergenic |
| GACGACGTTGCATGTGAAAT+GGG | 0.478723 | 6.1:+20442303 | MS.gene52860:CDS |
| GTTGTTTGAGTTTGCGAAGG+TGG | 0.481636 | 6.1:-20442197 | None:intergenic |
| GCTCTCTTGGCGACGAAGGA+TGG | 0.484511 | 6.1:+20445281 | MS.gene52860:CDS |
| AGAAATGGCCGACTATTAGT+AGG | 0.490131 | 6.1:+20445722 | MS.gene52860:CDS |
| GAGGTTTGGGAAGGTTAAAT+CGG | 0.493508 | 6.1:+20442507 | MS.gene52860:CDS |
| ATCAGCACCAAATGTAAAGC+AGG | 0.503357 | 6.1:-20445206 | None:intergenic |
| TGTGGGGTGCAGTTTATGGA+TGG | 0.503410 | 6.1:+20442424 | MS.gene52860:CDS |
| GATGATCTTGTCACTAGATG+GGG | 0.507725 | 6.1:+20445586 | MS.gene52860:CDS |
| GGAGAGGGTGCGGCTTCCGA+CGG | 0.508639 | 6.1:-20442167 | None:intergenic |
| ACAATGGATATAACTGCTGT+TGG | 0.509647 | 6.1:+20445475 | MS.gene52860:CDS |
| CGGTGGCTGCGGCGAAGAAG+GGG | 0.510716 | 6.1:+20442326 | MS.gene52860:CDS |
| AATGCCGAAACGGATTGGTT+CGG | 0.512845 | 6.1:-20442074 | None:intergenic |
| GTGAAGGTGTGTGAGGAATG+TGG | 0.518546 | 6.1:+20442406 | MS.gene52860:CDS |
| CAATGGATATAACTGCTGTT+GGG | 0.519696 | 6.1:+20445476 | MS.gene52860:CDS |
| CAAACCGAACCAATCCGTTT+CGG | 0.521658 | 6.1:+20442070 | MS.gene52860:CDS |
| CTTGGCTCTCTTGGCGACGA+AGG | 0.521752 | 6.1:+20445277 | MS.gene52860:CDS |
| TCCTTCACACTAACCGCCAC+AGG | 0.522525 | 6.1:-20442370 | None:intergenic |
| GACGGCGGAGATGGTGGCGG+TGG | 0.526330 | 6.1:-20442149 | None:intergenic |
| TTTCATTCCTGAATCTGTAC+AGG | 0.527130 | 6.1:-20445799 | None:intergenic |
| GCTTCTTTATATTGGGAAGA+TGG | 0.528569 | 6.1:+20445412 | MS.gene52860:CDS |
| GCCTGTGGCGGTTAGTGTGA+AGG | 0.531923 | 6.1:+20442369 | MS.gene52860:CDS |
| TGGTTGCTTTGGAGAGGGTG+CGG | 0.534251 | 6.1:-20442177 | None:intergenic |
| TCCGACGGCGGAGATGGTGG+CGG | 0.536667 | 6.1:-20442152 | None:intergenic |
| CGAAGGTGGTTGCTTTGGAG+AGG | 0.541429 | 6.1:-20442183 | None:intergenic |
| ACTCCAGCTTTATTAAGCAC+TGG | 0.541763 | 6.1:-20445373 | None:intergenic |
| CACAACCGAGAATGCCGAAA+CGG | 0.548896 | 6.1:-20442084 | None:intergenic |
| GCTTCCGACGGCGGAGATGG+TGG | 0.552911 | 6.1:-20442155 | None:intergenic |
| AGATGGTGGCGGTGGATGAG+AGG | 0.554511 | 6.1:-20442141 | None:intergenic |
| ACATGCAACGTCGTCGGTAA+CGG | 0.555872 | 6.1:-20442295 | None:intergenic |
| AATGGCGCGTGAGAGTTTGC+GGG | 0.557508 | 6.1:-20442116 | None:intergenic |
| GGATGAGGAGAGGTTTGGGA+AGG | 0.557687 | 6.1:+20442498 | MS.gene52860:CDS |
| GGCGGTGGATGAGAGGAGAA+TGG | 0.559727 | 6.1:-20442134 | None:intergenic |
| TTTCTTATCTAACCTAACAA+TGG | 0.559985 | 6.1:+20445459 | MS.gene52860:CDS |
| AATAGAAAACGATCTCCCTC+AGG | 0.562369 | 6.1:+20445630 | MS.gene52860:CDS |
| CCTAGAACGGAGGTGATGAA+GGG | 0.571024 | 6.1:+20442466 | MS.gene52860:CDS |
| CCTCCCACCGCCAAAATCTA+CGG | 0.577677 | 6.1:+20442223 | MS.gene52860:CDS |
| GAGCCAGTGCTTAATAAAGC+TGG | 0.580556 | 6.1:+20445370 | MS.gene52860:CDS |
| ACCGCCACCATCTCCGCCGT+CGG | 0.584263 | 6.1:+20442151 | MS.gene52860:CDS |
| GAGGGTGCGGCTTCCGACGG+CGG | 0.587887 | 6.1:-20442164 | None:intergenic |
| ATTGTGTTAGAGCAATTCTG+TGG | 0.595898 | 6.1:+20445305 | MS.gene52860:CDS |
| GAAGGTGGTTGCTTTGGAGA+GGG | 0.596573 | 6.1:-20442182 | None:intergenic |
| TTTCGGCATTCTCGGTTGTG+CGG | 0.598815 | 6.1:+20442087 | MS.gene52860:CDS |
| GTTGCATGTGAAATGGGCGG+TGG | 0.605659 | 6.1:+20442309 | MS.gene52860:CDS |
| GAAGTTGTTTGAGTTTGCGA+AGG | 0.607536 | 6.1:-20442200 | None:intergenic |
| GTCGTCAAGAACTTCATCAT+AGG | 0.609054 | 6.1:-20442248 | None:intergenic |
| GTGGGGTGCAGTTTATGGAT+GGG | 0.617072 | 6.1:+20442425 | MS.gene52860:CDS |
| GGAGTTTGATGAGATTGTGA+AGG | 0.628031 | 6.1:+20442390 | MS.gene52860:CDS |
| GTGGATGCATCATCCTAGAA+CGG | 0.629139 | 6.1:+20442453 | MS.gene52860:CDS |
| TGAGATTGTGAAGGTGTGTG+AGG | 0.632007 | 6.1:+20442399 | MS.gene52860:CDS |
| GCTGGAGTGATTCTATCTTG+TGG | 0.635997 | 6.1:+20445388 | MS.gene52860:CDS |
| GAAGGTGTGTGAGGAATGTG+GGG | 0.637070 | 6.1:+20442408 | MS.gene52860:CDS |
| TTGTGTTAGAGCAATTCTGT+GGG | 0.638125 | 6.1:+20445306 | MS.gene52860:CDS |
| CATTTCACATGCAACGTCGT+CGG | 0.650632 | 6.1:-20442301 | None:intergenic |
| AGAAAACGATCTCCCTCAGG+AGG | 0.651262 | 6.1:+20445633 | MS.gene52860:CDS |
| TTACCATAAGAGCCTCCTGA+GGG | 0.654472 | 6.1:-20445645 | None:intergenic |
| AGTTTATGGATGGGACTATG+TGG | 0.660551 | 6.1:+20442434 | MS.gene52860:CDS |
| GATGCATCATCCTAGAACGG+AGG | 0.667515 | 6.1:+20442456 | MS.gene52860:CDS |
| CTAGAACGGAGGTGATGAAG+GGG | 0.676280 | 6.1:+20442467 | MS.gene52860:CDS |
| TTTGCTTGAGAAGCCTGTGG+CGG | 0.688730 | 6.1:+20442357 | MS.gene52860:CDS |
| GTTACCATAAGAGCCTCCTG+AGG | 0.717914 | 6.1:-20445646 | None:intergenic |
| GACGTTGCATGTGAAATGGG+CGG | 0.751365 | 6.1:+20442306 | MS.gene52860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACTTAATGTTTAAGATT+GGG | - | chr6.1:20445090-20445109 | None:intergenic | 15.0% |
| !!! | AGATTATTTTTTAGAGATTT+AGG | + | chr6.1:20443128-20443147 | MS.gene52860:intron | 15.0% |
| !!! | GATTATTTTTTAGAGATTTA+GGG | + | chr6.1:20443129-20443148 | MS.gene52860:intron | 15.0% |
| !!! | TGATTATCTAAAATTATTAG+CGG | + | chr6.1:20442674-20442693 | MS.gene52860:intron | 15.0% |
| !! | ATAATGTTGATGTATAAACT+AGG | + | chr6.1:20442552-20442571 | MS.gene52860:intron | 20.0% |
| !! | ATTAATGTATGAAGCTAAAA+GGG | + | chr6.1:20443414-20443433 | MS.gene52860:intron | 20.0% |
| !! | CCTCTTTATTAAATTATCAT+CGG | - | chr6.1:20442775-20442794 | None:intergenic | 20.0% |
| !! | TAAGAAAATAGAAGTGATTT+GGG | + | chr6.1:20443359-20443378 | MS.gene52860:intron | 20.0% |
| !! | TGTATAAATAATGAGAATGT+AGG | + | chr6.1:20443604-20443623 | MS.gene52860:intron | 20.0% |
| !! | TTAAGAAAATAGAAGTGATT+TGG | + | chr6.1:20443358-20443377 | MS.gene52860:intron | 20.0% |
| !! | TTGAAATTATAAGAGTTAGA+CGG | + | chr6.1:20444048-20444067 | MS.gene52860:intron | 20.0% |
| !!! | GAAAACTTAATGTTTAAGAT+TGG | - | chr6.1:20445091-20445110 | None:intergenic | 20.0% |
| !!! | GAAACATGATTTTAATGTTA+TGG | + | chr6.1:20443465-20443484 | MS.gene52860:intron | 20.0% |
| !!! | TATGATATTGATGATGATTT+AGG | + | chr6.1:20443044-20443063 | MS.gene52860:intron | 20.0% |
| !!! | TTTTCATTTCGTAAATTTGA+AGG | + | chr6.1:20444532-20444551 | MS.gene52860:intron | 20.0% |
| !!! | TTTTGGTTATCTAAATTCTA+TGG | - | chr6.1:20444572-20444591 | None:intergenic | 20.0% |
| ! | AAAGGGACTAAATTGATTAT+CGG | + | chr6.1:20444488-20444507 | MS.gene52860:intron | 25.0% |
| ! | AAGAAAATAGAAGCGATTTA+GGG | + | chr6.1:20442940-20442959 | MS.gene52860:intron | 25.0% |
| ! | AAGAAAATAGAAGTGATTTG+GGG | + | chr6.1:20443360-20443379 | MS.gene52860:intron | 25.0% |
| ! | AGAAGAGTTAAAAAAAATCC+TGG | + | chr6.1:20444692-20444711 | MS.gene52860:intron | 25.0% |
| ! | AGGTACAAAAAACAATTCAA+AGG | - | chr6.1:20443719-20443738 | None:intergenic | 25.0% |
| ! | ATTATCTATACTCATCCAAT+GGG | + | chr6.1:20443937-20443956 | MS.gene52860:intron | 25.0% |
| ! | CAGTAAATTCTGATGAATTT+GGG | + | chr6.1:20444357-20444376 | MS.gene52860:intron | 25.0% |
| ! | CATTAATGTATGAAGCTAAA+AGG | + | chr6.1:20443413-20443432 | MS.gene52860:intron | 25.0% |
| ! | CCGATGATAATTTAATAAAG+AGG | + | chr6.1:20442772-20442791 | MS.gene52860:intron | 25.0% |
| ! | GAAAGATGATACTTGATATT+TGG | + | chr6.1:20443628-20443647 | MS.gene52860:intron | 25.0% |
| ! | TAAGAAAATAGAAGCGATTT+AGG | + | chr6.1:20442939-20442958 | MS.gene52860:intron | 25.0% |
| ! | TAATACAACCTTCATATACT+TGG | - | chr6.1:20444083-20444102 | None:intergenic | 25.0% |
| ! | TCAGTAAATTCTGATGAATT+TGG | + | chr6.1:20444356-20444375 | MS.gene52860:intron | 25.0% |
| ! | TTATTGGATGAAATTCATGT+GGG | - | chr6.1:20442877-20442896 | None:intergenic | 25.0% |
| ! | TTTATCCAGTTAGATAGAAA+GGG | + | chr6.1:20444471-20444490 | MS.gene52860:intron | 25.0% |
| ! | TTTATTGGATGAAATTCATG+TGG | - | chr6.1:20442878-20442897 | None:intergenic | 25.0% |
| ! | TTTCTTATCTAACCTAACAA+TGG | + | chr6.1:20445459-20445478 | MS.gene52860:CDS | 25.0% |
| !! | ATGATTTAGGATAATAGAAG+TGG | + | chr6.1:20443057-20443076 | MS.gene52860:intron | 25.0% |
| !! | TGTCACGTAATTTTTCATTT+TGG | + | chr6.1:20444719-20444738 | MS.gene52860:intron | 25.0% |
| !! | TTAAGAGTAACTGAACATTT+TGG | - | chr6.1:20444589-20444608 | None:intergenic | 25.0% |
| !! | TTTTATCCAGTTAGATAGAA+AGG | + | chr6.1:20444470-20444489 | MS.gene52860:intron | 25.0% |
| !!! | GAGATTAGATCACTTTTATA+CGG | + | chr6.1:20443499-20443518 | MS.gene52860:intron | 25.0% |
| !!! | TTTCTGTTGGTTCTTAATTT+TGG | - | chr6.1:20445002-20445021 | None:intergenic | 25.0% |
| AAAATTACGTGACATTAACC+AGG | - | chr6.1:20444713-20444732 | None:intergenic | 30.0% | |
| ACGAGTACATTTGATATGTT+GGG | - | chr6.1:20443843-20443862 | None:intergenic | 30.0% | |
| AGGATAATAGAAGTGGTTTA+GGG | + | chr6.1:20443064-20443083 | MS.gene52860:intron | 30.0% | |
| AGTTTCTGTACCACATAAAA+TGG | + | chr6.1:20443906-20443925 | MS.gene52860:intron | 30.0% | |
| ATTCAGTGTAATTATCTGTG+TGG | - | chr6.1:20442650-20442669 | None:intergenic | 30.0% | |
| CACTGATATATGGTTTGATT+TGG | + | chr6.1:20445166-20445185 | MS.gene52860:intron | 30.0% | |
| CATTATCTATACTCATCCAA+TGG | + | chr6.1:20443936-20443955 | MS.gene52860:intron | 30.0% | |
| GTTCAATAATGAGTCTCTAA+GGG | - | chr6.1:20444919-20444938 | None:intergenic | 30.0% | |
| GTTTCTGTACCACATAAAAT+GGG | + | chr6.1:20443907-20443926 | MS.gene52860:intron | 30.0% | |
| GTTTGATACTCAAGAAACAT+AGG | + | chr6.1:20443537-20443556 | MS.gene52860:intron | 30.0% | |
| TAACACAGCATAATAACTGT+TGG | - | chr6.1:20445116-20445135 | None:intergenic | 30.0% | |
| TACGAGTACATTTGATATGT+TGG | - | chr6.1:20443844-20443863 | None:intergenic | 30.0% | |
| TACTGAATTAGCTGAAGAAA+GGG | - | chr6.1:20444342-20444361 | None:intergenic | 30.0% | |
| TAGGATAATAGAAGTGGTTT+AGG | + | chr6.1:20443063-20443082 | MS.gene52860:intron | 30.0% | |
| TATGAAGCTAAAAGGGATTT+AGG | + | chr6.1:20443421-20443440 | MS.gene52860:intron | 30.0% | |
| TCAATACTATAGCTTTCTGT+TGG | - | chr6.1:20445015-20445034 | None:intergenic | 30.0% | |
| TCCAATAAAATAGTGAGTGT+TGG | + | chr6.1:20442889-20442908 | MS.gene52860:intron | 30.0% | |
| TGTTCAATAATGAGTCTCTA+AGG | - | chr6.1:20444920-20444939 | None:intergenic | 30.0% | |
| TTACTGAATTAGCTGAAGAA+AGG | - | chr6.1:20444343-20444362 | None:intergenic | 30.0% | |
| TTCAGTGTAATTATCTGTGT+GGG | - | chr6.1:20442649-20442668 | None:intergenic | 30.0% | |
| TTGGCTTAGTGTATAGATAA+TGG | + | chr6.1:20444645-20444664 | MS.gene52860:intron | 30.0% | |
| ! | ATTATCGGTTATCAACTTCA+TGG | + | chr6.1:20444503-20444522 | MS.gene52860:intron | 30.0% |
| ! | GATGCTTTCTTTTCTTCATA+AGG | - | chr6.1:20445538-20445557 | None:intergenic | 30.0% |
| ! | GATTTAGGGTTCATTTGTTA+TGG | + | chr6.1:20443143-20443162 | MS.gene52860:intron | 30.0% |
| ! | TCCAACACTCACTATTTTAT+TGG | - | chr6.1:20442893-20442912 | None:intergenic | 30.0% |
| ! | TCGCTTCTATTTTCTTAAAG+AGG | - | chr6.1:20442936-20442955 | None:intergenic | 30.0% |
| ! | TGTGTTTTCCTACTAATAGT+CGG | - | chr6.1:20445733-20445752 | None:intergenic | 30.0% |
| ! | TTTTCTATTACGTGCTTACT+CGG | - | chr6.1:20445619-20445638 | None:intergenic | 30.0% |
| !! | TAGGAAAACACAACTGATTT+TGG | + | chr6.1:20445741-20445760 | MS.gene52860:CDS | 30.0% |
| !!! | GAATTGTTTTTTGTACCTAG+CGG | + | chr6.1:20443721-20443740 | MS.gene52860:intron | 30.0% |
| AAAGAAACCCAAAGATGCAA+AGG | - | chr6.1:20444243-20444262 | None:intergenic | 35.0% | |
| AAAGAACTGCAAAAAGGCAA+GGG | - | chr6.1:20444270-20444289 | None:intergenic | 35.0% | |
| AAGTTCACACACACTAATTG+CGG | + | chr6.1:20443778-20443797 | MS.gene52860:intron | 35.0% | |
| ACAATGGATATAACTGCTGT+TGG | + | chr6.1:20445475-20445494 | MS.gene52860:CDS | 35.0% | |
| ACGTAAACAGCATCAACATT+AGG | - | chr6.1:20442274-20442293 | None:intergenic | 35.0% | |
| ATAATGTCATCAAATCCACG+CGG | - | chr6.1:20442828-20442847 | None:intergenic | 35.0% | |
| ATCTGAAAACATACTTCAGC+TGG | + | chr6.1:20444416-20444435 | MS.gene52860:intron | 35.0% | |
| ATTCACACCTGCTTTACATT+TGG | + | chr6.1:20445199-20445218 | MS.gene52860:CDS | 35.0% | |
| ATTGACTGAGCTGCAATTAT+AGG | + | chr6.1:20443871-20443890 | MS.gene52860:intron | 35.0% | |
| ATTGTGTTAGAGCAATTCTG+TGG | + | chr6.1:20445305-20445324 | MS.gene52860:CDS | 35.0% | |
| CAAATTCAAAAACGCGAAAC+CGG | + | chr6.1:20445696-20445715 | MS.gene52860:CDS | 35.0% | |
| CAATAGTCGCAAGTTTAAGT+TGG | + | chr6.1:20444626-20444645 | MS.gene52860:intron | 35.0% | |
| CAATGGATATAACTGCTGTT+GGG | + | chr6.1:20445476-20445495 | MS.gene52860:CDS | 35.0% | |
| CAGCAGTTATATCCATTGTT+AGG | - | chr6.1:20445474-20445493 | None:intergenic | 35.0% | |
| CGAGTACATTTGATATGTTG+GGG | - | chr6.1:20443842-20443861 | None:intergenic | 35.0% | |
| CGTAAACAGCATCAACATTA+GGG | - | chr6.1:20442273-20442292 | None:intergenic | 35.0% | |
| GCTTCTTTATATTGGGAAGA+TGG | + | chr6.1:20445412-20445431 | MS.gene52860:CDS | 35.0% | |
| GGTTATCTAAATTCTATGGC+AGG | - | chr6.1:20444568-20444587 | None:intergenic | 35.0% | |
| TACAACCTTCATATACTTGG+CGG | - | chr6.1:20444080-20444099 | None:intergenic | 35.0% | |
| TATATCAGTGCAGAACTGTA+CGG | - | chr6.1:20445156-20445175 | None:intergenic | 35.0% | |
| TGATGATCTTGTCACTAGAT+GGG | + | chr6.1:20445585-20445604 | MS.gene52860:CDS | 35.0% | |
| TGCCACCAAATGAGAAAATT+CGG | - | chr6.1:20445671-20445690 | None:intergenic | 35.0% | |
| TTAGTCCCTTTCTATCTAAC+TGG | - | chr6.1:20444479-20444498 | None:intergenic | 35.0% | |
| TTATTCCGCCAAGTATATGA+AGG | + | chr6.1:20444072-20444091 | MS.gene52860:intron | 35.0% | |
| TTCACTCATTTGATAAGCTC+AGG | - | chr6.1:20444013-20444032 | None:intergenic | 35.0% | |
| TTGTGGCGCTTCTTTATATT+GGG | + | chr6.1:20445405-20445424 | MS.gene52860:CDS | 35.0% | |
| TTGTGTTAGAGCAATTCTGT+GGG | + | chr6.1:20445306-20445325 | MS.gene52860:CDS | 35.0% | |
| ! | AACCGAATTTTCTCATTTGG+TGG | + | chr6.1:20445666-20445685 | MS.gene52860:CDS | 35.0% |
| ! | ATAATGAGTCTCTAAGGGAA+AGG | - | chr6.1:20444914-20444933 | None:intergenic | 35.0% |
| ! | CGATACGCTAATACTGTTTT+AGG | - | chr6.1:20445349-20445368 | None:intergenic | 35.0% |
| ! | GAAGTGATTTGGGGTTAAAA+CGG | + | chr6.1:20443369-20443388 | MS.gene52860:intron | 35.0% |
| ! | GGTAACCGAATTTTCTCATT+TGG | + | chr6.1:20445663-20445682 | MS.gene52860:CDS | 35.0% |
| ! | GTAGTCCTTTTGTTAATCAG+CGG | + | chr6.1:20444132-20444151 | MS.gene52860:intron | 35.0% |
| ! | TACAGTTCTGCACTGATATA+TGG | + | chr6.1:20445156-20445175 | MS.gene52860:intron | 35.0% |
| ! | TAGTCCTTTTGTTAATCAGC+GGG | + | chr6.1:20444133-20444152 | MS.gene52860:intron | 35.0% |
| ! | TGGATTTGATGACATTATGC+CGG | + | chr6.1:20442830-20442849 | MS.gene52860:intron | 35.0% |
| ! | TGTATTTGTTGACGATGTCT+TGG | + | chr6.1:20444885-20444904 | MS.gene52860:intron | 35.0% |
| ! | TTGATGATCTTGTCACTAGA+TGG | + | chr6.1:20445584-20445603 | MS.gene52860:CDS | 35.0% |
| ! | TTTTTGCAGTTCTTTGTGCT+GGG | + | chr6.1:20444275-20444294 | MS.gene52860:intron | 35.0% |
| !! | ATCCAATGGGCTATTGATTT+GGG | + | chr6.1:20443950-20443969 | MS.gene52860:intron | 35.0% |
| !! | GATTTAGGCTCTGTTTTTCA+CGG | + | chr6.1:20443436-20443455 | MS.gene52860:intron | 35.0% |
| AATAGAAAACGATCTCCCTC+AGG | + | chr6.1:20445630-20445649 | MS.gene52860:CDS | 40.0% | |
| AGAAATGGCCGACTATTAGT+AGG | + | chr6.1:20445722-20445741 | MS.gene52860:CDS | 40.0% | |
| AGTTTATGGATGGGACTATG+TGG | + | chr6.1:20442434-20442453 | MS.gene52860:CDS | 40.0% | |
| ATAACTGCTGTTGGGACAAA+AGG | + | chr6.1:20445484-20445503 | MS.gene52860:CDS | 40.0% | |
| ATCAGCACCAAATGTAAAGC+AGG | - | chr6.1:20445209-20445228 | None:intergenic | 40.0% | |
| ATGTCGTTCTCGAGAAAATC+AGG | - | chr6.1:20445232-20445251 | None:intergenic | 40.0% | |
| CAAAGAACTGCAAAAAGGCA+AGG | - | chr6.1:20444271-20444290 | None:intergenic | 40.0% | |
| CAGCACAAAGAACTGCAAAA+AGG | - | chr6.1:20444276-20444295 | None:intergenic | 40.0% | |
| CTATCTGTCAGTATCATGTC+AGG | - | chr6.1:20443316-20443335 | None:intergenic | 40.0% | |
| CTTATCAATCGAAGCCTTCA+CGG | - | chr6.1:20445770-20445789 | None:intergenic | 40.0% | |
| CTTGTGGCGCTTCTTTATAT+TGG | + | chr6.1:20445404-20445423 | MS.gene52860:CDS | 40.0% | |
| GAGGTTTGGGAAGGTTAAAT+CGG | + | chr6.1:20442507-20442526 | MS.gene52860:CDS | 40.0% | |
| GATGATCTTGTCACTAGATG+GGG | + | chr6.1:20445586-20445605 | MS.gene52860:CDS | 40.0% | |
| GCAACGACAGCAAAAACAAT+AGG | - | chr6.1:20444183-20444202 | None:intergenic | 40.0% | |
| GCATAATAGAGATCAGCAGA+AGG | + | chr6.1:20444382-20444401 | MS.gene52860:intron | 40.0% | |
| GGAGTTTGATGAGATTGTGA+AGG | + | chr6.1:20442390-20442409 | MS.gene52860:CDS | 40.0% | |
| GGCGTTTCTTCTGAATCAAA+TGG | + | chr6.1:20444855-20444874 | MS.gene52860:intron | 40.0% | |
| GTCGTCAAGAACTTCATCAT+AGG | - | chr6.1:20442251-20442270 | None:intergenic | 40.0% | |
| GTGAAGGCTTCGATTGATAA+GGG | + | chr6.1:20445769-20445788 | MS.gene52860:CDS | 40.0% | |
| TTAATGTCTGTACGAGCAAG+AGG | + | chr6.1:20443653-20443672 | MS.gene52860:intron | 40.0% | |
| TTTGATTCAGAAGAAACGCC+AGG | - | chr6.1:20444855-20444874 | None:intergenic | 40.0% | |
| ! | AGTCCTTTTGTTAATCAGCG+GGG | + | chr6.1:20444134-20444153 | MS.gene52860:intron | 40.0% |
| ! | ATCATAGGAGCCGTAGATTT+TGG | - | chr6.1:20442236-20442255 | None:intergenic | 40.0% |
| ! | ATGCACAAGCCCATTTTATG+TGG | - | chr6.1:20443919-20443938 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGTTCTTTGTGC+TGG | + | chr6.1:20444274-20444293 | MS.gene52860:intron | 40.0% |
| ! | GAAGTTGTTTGAGTTTGCGA+AGG | - | chr6.1:20442203-20442222 | None:intergenic | 40.0% |
| ! | TTTTGAGCCTGTACAGATTC+AGG | + | chr6.1:20445792-20445811 | MS.gene52860:CDS | 40.0% |
| !! | ACTCCAGCTTTATTAAGCAC+TGG | - | chr6.1:20445376-20445395 | None:intergenic | 40.0% |
| !! | CACACACTTTTTGTACCTAG+CGG | + | chr6.1:20443753-20443772 | MS.gene52860:intron | 40.0% |
| !! | CATCCAATGGGCTATTGATT+TGG | + | chr6.1:20443949-20443968 | MS.gene52860:intron | 40.0% |
| !! | CTTGTTTTCACCAAGTGTGT+TGG | + | chr6.1:20444217-20444236 | MS.gene52860:intron | 40.0% |
| !! | TCCAATGGGCTATTGATTTG+GGG | + | chr6.1:20443951-20443970 | MS.gene52860:intron | 40.0% |
| AAGCAGAAGCTGTGTTTGTG+TGG | + | chr6.1:20443221-20443240 | MS.gene52860:intron | 45.0% | |
| ACATTTGATATGTTGGGGCG+CGG | - | chr6.1:20443837-20443856 | None:intergenic | 45.0% | |
| ATAGTCGGCCATTTCTTCTC+CGG | - | chr6.1:20445718-20445737 | None:intergenic | 45.0% | |
| CAAACCGAACCAATCCGTTT+CGG | + | chr6.1:20442070-20442089 | MS.gene52860:CDS | 45.0% | |
| CATTTCACATGCAACGTCGT+CGG | - | chr6.1:20442304-20442323 | None:intergenic | 45.0% | |
| CCACATTTCAGAAATGGGTC+CGG | - | chr6.1:20442852-20442871 | None:intergenic | 45.0% | |
| CGTGAAGGCTTCGATTGATA+AGG | + | chr6.1:20445768-20445787 | MS.gene52860:CDS | 45.0% | |
| CTCTTTCTAACAAATCCGCG+TGG | + | chr6.1:20442810-20442829 | MS.gene52860:intron | 45.0% | |
| CTTCGTGTCAGTGTCTACAT+TGG | - | chr6.1:20442741-20442760 | None:intergenic | 45.0% | |
| GACGACGTTGCATGTGAAAT+GGG | + | chr6.1:20442303-20442322 | MS.gene52860:CDS | 45.0% | |
| GAGCCAGTGCTTAATAAAGC+TGG | + | chr6.1:20445370-20445389 | MS.gene52860:CDS | 45.0% | |
| GCTGGAGTGATTCTATCTTG+TGG | + | chr6.1:20445388-20445407 | MS.gene52860:CDS | 45.0% | |
| GCTGTAAGCGTAAACTAGTG+AGG | - | chr6.1:20443679-20443698 | None:intergenic | 45.0% | |
| GGGTCCCACATTTCAGAAAT+GGG | - | chr6.1:20442857-20442876 | None:intergenic | 45.0% | |
| GTGGATGCATCATCCTAGAA+CGG | + | chr6.1:20442453-20442472 | MS.gene52860:CDS | 45.0% | |
| TAGGAAAGACTGACACTCCT+CGG | + | chr6.1:20442571-20442590 | MS.gene52860:intron | 45.0% | |
| TGGGTCCCACATTTCAGAAA+TGG | - | chr6.1:20442858-20442877 | None:intergenic | 45.0% | |
| TGGTGAAAACAAGCACCAGT+AGG | - | chr6.1:20444210-20444229 | None:intergenic | 45.0% | |
| TTACCATAAGAGCCTCCTGA+GGG | - | chr6.1:20445648-20445667 | None:intergenic | 45.0% | |
| ! | AAGCCCCGCTGATTAACAAA+AGG | - | chr6.1:20444140-20444159 | None:intergenic | 45.0% |
| ! | ATAGGAGCCGTAGATTTTGG+CGG | - | chr6.1:20442233-20442252 | None:intergenic | 45.0% |
| ! | GATTAGACGTGTCTTGGTGT+CGG | + | chr6.1:20442593-20442612 | MS.gene52860:intron | 45.0% |
| ! | GTTGTTTGAGTTTGCGAAGG+TGG | - | chr6.1:20442200-20442219 | None:intergenic | 45.0% |
| ! | TGAAGGTGTGTGAGGAATGT+GGG | + | chr6.1:20442407-20442426 | MS.gene52860:CDS | 45.0% |
| ! | TGAGATTGTGAAGGTGTGTG+AGG | + | chr6.1:20442399-20442418 | MS.gene52860:CDS | 45.0% |
| ! | TGTTTTGCTTGAGAAGCCTG+TGG | + | chr6.1:20442354-20442373 | MS.gene52860:CDS | 45.0% |
| !! | AATGCCGAAACGGATTGGTT+CGG | - | chr6.1:20442077-20442096 | None:intergenic | 45.0% |
| !! | ACTGATTTTGGATGCCGTGA+AGG | + | chr6.1:20445753-20445772 | MS.gene52860:CDS | 45.0% |
| !! | ATTGATTTGGGGGGTTGGTT+AGG | + | chr6.1:20443962-20443981 | MS.gene52860:intron | 45.0% |
| !! | CAATGGGCTATTGATTTGGG+GGG | + | chr6.1:20443953-20443972 | MS.gene52860:intron | 45.0% |
| !! | CCAATGGGCTATTGATTTGG+GGG | + | chr6.1:20443952-20443971 | MS.gene52860:intron | 45.0% |
| !! | CGGACCCATTTCTGAAATGT+GGG | + | chr6.1:20442850-20442869 | MS.gene52860:intron | 45.0% |
| !! | GTGTTGGCCTTTGCATCTTT+GGG | + | chr6.1:20444233-20444252 | MS.gene52860:intron | 45.0% |
| !! | TGCGGAGAAAAGAAGCATTG+CGG | + | chr6.1:20443796-20443815 | MS.gene52860:intron | 45.0% |
| !! | TGTGTTGGCCTTTGCATCTT+TGG | + | chr6.1:20444232-20444251 | MS.gene52860:intron | 45.0% |
| ACATGCAACGTCGTCGGTAA+CGG | - | chr6.1:20442298-20442317 | None:intergenic | 50.0% | |
| ACCAAGACACGTCTAATCCG+AGG | - | chr6.1:20442591-20442610 | None:intergenic | 50.0% | |
| ACGCGAAACCGGAGAAGAAA+TGG | + | chr6.1:20445707-20445726 | MS.gene52860:CDS | 50.0% | |
| AGAAAACGATCTCCCTCAGG+AGG | + | chr6.1:20445633-20445652 | MS.gene52860:CDS | 50.0% | |
| AGCTGTGTTTGTGTGGAGGA+TGG | + | chr6.1:20443228-20443247 | MS.gene52860:intron | 50.0% | |
| ATCAGCGGGGCTTTACTTTC+TGG | + | chr6.1:20444147-20444166 | MS.gene52860:intron | 50.0% | |
| CACAACCGAGAATGCCGAAA+CGG | - | chr6.1:20442087-20442106 | None:intergenic | 50.0% | |
| CAGAAGCTGTGTTTGTGTGG+AGG | + | chr6.1:20443224-20443243 | MS.gene52860:intron | 50.0% | |
| CCAATCCGTTTCGGCATTCT+CGG | + | chr6.1:20442079-20442098 | MS.gene52860:CDS | 50.0% | |
| CCCCCAAATCAATAGCCCAT+TGG | - | chr6.1:20443955-20443974 | None:intergenic | 50.0% | |
| CCTAGAACGGAGGTGATGAA+GGG | + | chr6.1:20442466-20442485 | MS.gene52860:CDS | 50.0% | |
| CGACGACGTTGCATGTGAAA+TGG | + | chr6.1:20442302-20442321 | MS.gene52860:CDS | 50.0% | |
| CTAGAACGGAGGTGATGAAG+GGG | + | chr6.1:20442467-20442486 | MS.gene52860:CDS | 50.0% | |
| CTGTGTTTGTGTGGAGGATG+GGG | + | chr6.1:20443230-20443249 | MS.gene52860:intron | 50.0% | |
| GACGTTGCATGTGAAATGGG+CGG | + | chr6.1:20442306-20442325 | MS.gene52860:CDS | 50.0% | |
| GATGCAAAGGCCAACACACT+TGG | - | chr6.1:20444230-20444249 | None:intergenic | 50.0% | |
| GATGCATCATCCTAGAACGG+AGG | + | chr6.1:20442456-20442475 | MS.gene52860:CDS | 50.0% | |
| GCTGTGTTTGTGTGGAGGAT+GGG | + | chr6.1:20443229-20443248 | MS.gene52860:intron | 50.0% | |
| GGAATGTGGGGTGCAGTTTA+TGG | + | chr6.1:20442420-20442439 | MS.gene52860:CDS | 50.0% | |
| GTGGGGTGCAGTTTATGGAT+GGG | + | chr6.1:20442425-20442444 | MS.gene52860:CDS | 50.0% | |
| GTTACCATAAGAGCCTCCTG+AGG | - | chr6.1:20445649-20445668 | None:intergenic | 50.0% | |
| GTTTGCGAAGGTGGTTGCTT+TGG | - | chr6.1:20442191-20442210 | None:intergenic | 50.0% | |
| TCCTAGAACGGAGGTGATGA+AGG | + | chr6.1:20442465-20442484 | MS.gene52860:CDS | 50.0% | |
| TGGAGGATGAGGAGAGGTTT+GGG | + | chr6.1:20442494-20442513 | MS.gene52860:CDS | 50.0% | |
| TGTGGGGTGCAGTTTATGGA+TGG | + | chr6.1:20442424-20442443 | MS.gene52860:CDS | 50.0% | |
| TTGGAGGATGAGGAGAGGTT+TGG | + | chr6.1:20442493-20442512 | MS.gene52860:CDS | 50.0% | |
| TTTCGGCATTCTCGGTTGTG+CGG | + | chr6.1:20442087-20442106 | MS.gene52860:CDS | 50.0% | |
| TTTGCTTGAGAAGCCTGTGG+CGG | + | chr6.1:20442357-20442376 | MS.gene52860:CDS | 50.0% | |
| ! | GAAGGTGTGTGAGGAATGTG+GGG | + | chr6.1:20442408-20442427 | MS.gene52860:CDS | 50.0% |
| ! | GGAGGTGATGAAGGGGTTTT+TGG | + | chr6.1:20442474-20442493 | MS.gene52860:CDS | 50.0% |
| ! | GTGAAGGTGTGTGAGGAATG+TGG | + | chr6.1:20442406-20442425 | MS.gene52860:CDS | 50.0% |
| ! | TCCTCGGATTAGACGTGTCT+TGG | + | chr6.1:20442587-20442606 | MS.gene52860:intron | 50.0% |
| !! | AAAGAAGCATTGCGGGTTGC+AGG | + | chr6.1:20443804-20443823 | MS.gene52860:intron | 50.0% |
| !! | CCGGACCCATTTCTGAAATG+TGG | + | chr6.1:20442849-20442868 | MS.gene52860:intron | 50.0% |
| !! | GAAGGGGTTTTTGGAGGATG+AGG | + | chr6.1:20442483-20442502 | MS.gene52860:CDS | 50.0% |
| !! | GAAGGTGGTTGCTTTGGAGA+GGG | - | chr6.1:20442185-20442204 | None:intergenic | 50.0% |
| !! | GCGGAGAAAAGAAGCATTGC+GGG | + | chr6.1:20443797-20443816 | MS.gene52860:intron | 50.0% |
| !! | GGTGATGAAGGGGTTTTTGG+AGG | + | chr6.1:20442477-20442496 | MS.gene52860:CDS | 50.0% |
| !! | GGTTTTTGGAGGATGAGGAG+AGG | + | chr6.1:20442488-20442507 | MS.gene52860:CDS | 50.0% |
| AAGCCAGATCTCGACGCTCT+TGG | + | chr6.1:20445259-20445278 | MS.gene52860:CDS | 55.0% | |
| AATGGCGCGTGAGAGTTTGC+GGG | - | chr6.1:20442119-20442138 | None:intergenic | 55.0% | |
| CCCTTCATCACCTCCGTTCT+AGG | - | chr6.1:20442469-20442488 | None:intergenic | 55.0% | |
| CCGAGAATGCCGAAACGGAT+TGG | - | chr6.1:20442082-20442101 | None:intergenic | 55.0% | |
| CCTCCCACCGCCAAAATCTA+CGG | + | chr6.1:20442223-20442242 | MS.gene52860:CDS | 55.0% | |
| GAATGGCGCGTGAGAGTTTG+CGG | - | chr6.1:20442120-20442139 | None:intergenic | 55.0% | |
| GGATGAGGAGAGGTTTGGGA+AGG | + | chr6.1:20442498-20442517 | MS.gene52860:CDS | 55.0% | |
| GTTGCATGTGAAATGGGCGG+TGG | + | chr6.1:20442309-20442328 | MS.gene52860:CDS | 55.0% | |
| TCCTTCACACTAACCGCCAC+AGG | - | chr6.1:20442373-20442392 | None:intergenic | 55.0% | |
| TCTCCCTCAGGAGGCTCTTA+TGG | + | chr6.1:20445642-20445661 | MS.gene52860:CDS | 55.0% | |
| TGGAGGATGGGGAGAGGTTT+GGG | + | chr6.1:20443241-20443260 | MS.gene52860:intron | 55.0% | |
| TGTGTGTGAACTTCGCCGCT+AGG | - | chr6.1:20443739-20443758 | None:intergenic | 55.0% | |
| TTGAAACCCTGCTGCATGCC+TGG | + | chr6.1:20444834-20444853 | MS.gene52860:intron | 55.0% | |
| TTTGTGTGGAGGATGGGGAG+AGG | + | chr6.1:20443235-20443254 | MS.gene52860:intron | 55.0% | |
| ! | GCTGTCGTTGCTTTGCCTAC+TGG | + | chr6.1:20444192-20444211 | MS.gene52860:intron | 55.0% |
| ! | TATCTGTGTGGGTGTCGTGC+TGG | - | chr6.1:20442638-20442657 | None:intergenic | 55.0% |
| !! | CGAAGGTGGTTGCTTTGGAG+AGG | - | chr6.1:20442186-20442205 | None:intergenic | 55.0% |
| !! | CGTAGATTTTGGCGGTGGGA+GGG | - | chr6.1:20442225-20442244 | None:intergenic | 55.0% |
| !! | GAGCCGTAGATTTTGGCGGT+GGG | - | chr6.1:20442229-20442248 | None:intergenic | 55.0% |
| !! | GGGCTATTGATTTGGGGGGT+TGG | + | chr6.1:20443957-20443976 | MS.gene52860:intron | 55.0% |
| !! | TGGTTGCTTTGGAGAGGGTG+CGG | - | chr6.1:20442180-20442199 | None:intergenic | 55.0% |
| AGAAACGCCAGGCATGCAGC+AGG | - | chr6.1:20444844-20444863 | None:intergenic | 60.0% | |
| GAAACGCCAGGCATGCAGCA+GGG | - | chr6.1:20444843-20444862 | None:intergenic | 60.0% | |
| GCCTGTGGCGGTTAGTGTGA+AGG | + | chr6.1:20442369-20442388 | MS.gene52860:CDS | 60.0% | |
| GCTCTCTTGGCGACGAAGGA+TGG | + | chr6.1:20445281-20445300 | MS.gene52860:CDS | 60.0% | |
| GGCGGTGGATGAGAGGAGAA+TGG | - | chr6.1:20442137-20442156 | None:intergenic | 60.0% | |
| GTGGAGGATGGGGAGAGGTT+TGG | + | chr6.1:20443240-20443259 | MS.gene52860:intron | 60.0% | |
| TGTGAAATGGGCGGTGGCTG+CGG | + | chr6.1:20442315-20442334 | MS.gene52860:CDS | 60.0% | |
| ! | CTCGACGCTCTTGGCTCTCT+TGG | + | chr6.1:20445268-20445287 | MS.gene52860:CDS | 60.0% |
| ! | CTTGGCTCTCTTGGCGACGA+AGG | + | chr6.1:20445277-20445296 | MS.gene52860:CDS | 60.0% |
| ! | TGTGGGTGTCGTGCTGGTGT+CGG | - | chr6.1:20442632-20442651 | None:intergenic | 60.0% |
| !! | AGATGGTGGCGGTGGATGAG+AGG | - | chr6.1:20442144-20442163 | None:intergenic | 60.0% |
| !! | CCGTAGATTTTGGCGGTGGG+AGG | - | chr6.1:20442226-20442245 | None:intergenic | 60.0% |
| !! | GAGCCAAGAGCGTCGAGATC+TGG | - | chr6.1:20445265-20445284 | None:intergenic | 60.0% |
| !! | GGAGCCGTAGATTTTGGCGG+TGG | - | chr6.1:20442230-20442249 | None:intergenic | 60.0% |
| GGATGGGGAGAGGTTTGGGC+AGG | + | chr6.1:20443245-20443264 | MS.gene52860:intron | 65.0% | |
| ACCGCCACCATCTCCGCCGT+CGG | + | chr6.1:20442151-20442170 | MS.gene52860:CDS | 70.0% | |
| CGGTGGCTGCGGCGAAGAAG+GGG | + | chr6.1:20442326-20442345 | MS.gene52860:CDS | 70.0% | |
| GCGGTGGCTGCGGCGAAGAA+GGG | + | chr6.1:20442325-20442344 | MS.gene52860:CDS | 70.0% | |
| GCTTCCGACGGCGGAGATGG+TGG | - | chr6.1:20442158-20442177 | None:intergenic | 70.0% | |
| ! | GGAGAGGGTGCGGCTTCCGA+CGG | - | chr6.1:20442170-20442189 | None:intergenic | 70.0% |
| ! | TCCGACGGCGGAGATGGTGG+CGG | - | chr6.1:20442155-20442174 | None:intergenic | 70.0% |
| GCGGCTTCCGACGGCGGAGA+TGG | - | chr6.1:20442161-20442180 | None:intergenic | 75.0% | |
| GGCGGTGGCTGCGGCGAAGA+AGG | + | chr6.1:20442324-20442343 | MS.gene52860:CDS | 75.0% | |
| ! | GAGGGTGCGGCTTCCGACGG+CGG | - | chr6.1:20442167-20442186 | None:intergenic | 75.0% |
| !! | GACGGCGGAGATGGTGGCGG+TGG | - | chr6.1:20442152-20442171 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 20442064 | 20445819 | 20442064 | ID=MS.gene52860 |
| chr6.1 | mRNA | 20442064 | 20445819 | 20442064 | ID=MS.gene52860.t1;Parent=MS.gene52860 |
| chr6.1 | exon | 20442064 | 20442528 | 20442064 | ID=MS.gene52860.t1.exon1;Parent=MS.gene52860.t1 |
| chr6.1 | CDS | 20442064 | 20442528 | 20442064 | ID=cds.MS.gene52860.t1;Parent=MS.gene52860.t1 |
| chr6.1 | exon | 20445199 | 20445819 | 20445199 | ID=MS.gene52860.t1.exon2;Parent=MS.gene52860.t1 |
| chr6.1 | CDS | 20445199 | 20445819 | 20445199 | ID=cds.MS.gene52860.t1;Parent=MS.gene52860.t1 |
| Gene Sequence |
| Protein sequence |
