Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89000.t1 | XP_013451947.1 | 96.7 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 3.50E-201 | 710.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89000.t1 | Q9SZ83 | 63.2 | 359 | 132 | 0 | 1 | 359 | 1 | 359 | 3.1e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89000.t1 | A0A072UJH2 | 96.7 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 2.5e-201 | 710.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene89000 | 0.803537 | 3.32E-49 | -1.69E-46 |
| MS.gene049284 | MS.gene89000 | 0.818285 | 2.12E-52 | -1.69E-46 |
| MS.gene049351 | MS.gene89000 | 0.852903 | 3.40E-61 | -1.69E-46 |
| MS.gene049389 | MS.gene89000 | 0.82735 | 1.64E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene89000 | 0.835818 | 1.34E-56 | -1.69E-46 |
| MS.gene049491 | MS.gene89000 | 0.861374 | 1.07E-63 | -1.69E-46 |
| MS.gene049661 | MS.gene89000 | 0.840261 | 9.67E-58 | -1.69E-46 |
| MS.gene049662 | MS.gene89000 | 0.838206 | 3.30E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene89000 | 0.841154 | 5.64E-58 | -1.69E-46 |
| MS.gene050076 | MS.gene89000 | 0.848905 | 4.55E-60 | -1.69E-46 |
| MS.gene050099 | MS.gene89000 | 0.827498 | 1.51E-54 | -1.69E-46 |
| MS.gene050128 | MS.gene89000 | 0.832348 | 9.95E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene89000 | 0.88842 | 6.00E-73 | -1.69E-46 |
| MS.gene050397 | MS.gene89000 | 0.826337 | 2.87E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene89000 | 0.846383 | 2.25E-59 | -1.69E-46 |
| MS.gene050529 | MS.gene89000 | 0.824966 | 6.06E-54 | -1.69E-46 |
| MS.gene050670 | MS.gene89000 | 0.813622 | 2.33E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene89000 | 0.83046 | 2.90E-55 | -1.69E-46 |
| MS.gene050770 | MS.gene89000 | 0.832015 | 1.20E-55 | -1.69E-46 |
| MS.gene050812 | MS.gene89000 | 0.814653 | 1.38E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene89000 | 0.87735 | 6.74E-69 | -1.69E-46 |
| MS.gene05105 | MS.gene89000 | 0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene051255 | MS.gene89000 | 0.819146 | 1.35E-52 | -1.69E-46 |
| MS.gene051360 | MS.gene89000 | 0.821166 | 4.66E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene89000 | 0.803721 | 3.04E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene89000 | 0.83854 | 2.71E-57 | -1.69E-46 |
| MS.gene051582 | MS.gene89000 | 0.803336 | 3.66E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene89000 | 0.822744 | 2.01E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene89000 | 0.805662 | 1.20E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene89000 | 0.80387 | 2.84E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene89000 | 0.857691 | 1.37E-62 | -1.69E-46 |
| MS.gene052178 | MS.gene89000 | 0.854939 | 8.81E-62 | -1.69E-46 |
| MS.gene052188 | MS.gene89000 | 0.866808 | 2.17E-65 | -1.69E-46 |
| MS.gene052207 | MS.gene89000 | 0.804087 | 2.56E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene89000 | 0.809326 | 2.00E-50 | -1.69E-46 |
| MS.gene052287 | MS.gene89000 | 0.83436 | 3.14E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene89000 | 0.863645 | 2.15E-64 | -1.69E-46 |
| MS.gene052322 | MS.gene89000 | 0.825993 | 3.46E-54 | -1.69E-46 |
| MS.gene052326 | MS.gene89000 | 0.853263 | 2.68E-61 | -1.69E-46 |
| MS.gene052340 | MS.gene89000 | 0.852426 | 4.65E-61 | -1.69E-46 |
| MS.gene052481 | MS.gene89000 | 0.820571 | 6.39E-53 | -1.69E-46 |
| MS.gene052484 | MS.gene89000 | 0.838588 | 2.63E-57 | -1.69E-46 |
| MS.gene052485 | MS.gene89000 | 0.84463 | 6.71E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene89000 | 0.816604 | 5.08E-52 | -1.69E-46 |
| MS.gene053104 | MS.gene89000 | 0.800604 | 1.33E-48 | -1.69E-46 |
| MS.gene053209 | MS.gene89000 | 0.870656 | 1.24E-66 | -1.69E-46 |
| MS.gene053322 | MS.gene89000 | 0.839513 | 1.51E-57 | -1.69E-46 |
| MS.gene053557 | MS.gene89000 | 0.834556 | 2.80E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene89000 | 0.847318 | 1.25E-59 | -1.69E-46 |
| MS.gene054010 | MS.gene89000 | 0.810496 | 1.12E-50 | -1.69E-46 |
| MS.gene054012 | MS.gene89000 | 0.807634 | 4.59E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene89000 | 0.806049 | 9.93E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene89000 | 0.853304 | 2.61E-61 | -1.69E-46 |
| MS.gene054376 | MS.gene89000 | 0.843462 | 1.38E-58 | -1.69E-46 |
| MS.gene05455 | MS.gene89000 | 0.838444 | 2.87E-57 | -1.69E-46 |
| MS.gene054802 | MS.gene89000 | 0.818637 | 1.77E-52 | -1.69E-46 |
| MS.gene054803 | MS.gene89000 | 0.817836 | 2.68E-52 | -1.69E-46 |
| MS.gene054804 | MS.gene89000 | 0.819047 | 1.43E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene89000 | 0.831891 | 1.29E-55 | -1.69E-46 |
| MS.gene055277 | MS.gene89000 | 0.882417 | 1.06E-70 | -1.69E-46 |
| MS.gene055390 | MS.gene89000 | 0.880142 | 7.00E-70 | -1.69E-46 |
| MS.gene055412 | MS.gene89000 | 0.837381 | 5.37E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene89000 | 0.858099 | 1.04E-62 | -1.69E-46 |
| MS.gene055428 | MS.gene89000 | 0.855498 | 6.06E-62 | -1.69E-46 |
| MS.gene055499 | MS.gene89000 | 0.825096 | 5.65E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene89000 | 0.806871 | 6.66E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene89000 | 0.829934 | 3.90E-55 | -1.69E-46 |
| MS.gene055647 | MS.gene89000 | 0.806623 | 7.52E-50 | -1.69E-46 |
| MS.gene055712 | MS.gene89000 | 0.811348 | 7.32E-51 | -1.69E-46 |
| MS.gene055896 | MS.gene89000 | 0.801295 | 9.63E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene89000 | 0.85645 | 3.19E-62 | -1.69E-46 |
| MS.gene056407 | MS.gene89000 | 0.838585 | 2.63E-57 | -1.69E-46 |
| MS.gene056410 | MS.gene89000 | 0.873021 | 2.03E-67 | -1.69E-46 |
| MS.gene056609 | MS.gene89000 | 0.860743 | 1.67E-63 | -1.69E-46 |
| MS.gene056612 | MS.gene89000 | 0.833761 | 4.43E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene89000 | 0.86084 | 1.56E-63 | -1.69E-46 |
| MS.gene056897 | MS.gene89000 | 0.801584 | 8.40E-49 | -1.69E-46 |
| MS.gene056931 | MS.gene89000 | 0.833255 | 5.92E-56 | -1.69E-46 |
| MS.gene056933 | MS.gene89000 | 0.830505 | 2.83E-55 | -1.69E-46 |
| MS.gene056935 | MS.gene89000 | 0.827863 | 1.24E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene89000 | 0.822982 | 1.77E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene89000 | 0.850588 | 1.54E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene89000 | 0.81131 | 7.46E-51 | -1.69E-46 |
| MS.gene057123 | MS.gene89000 | 0.810088 | 1.37E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene89000 | 0.808939 | 2.42E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene89000 | 0.810709 | 1.01E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene89000 | 0.800684 | 1.28E-48 | -1.69E-46 |
| MS.gene057295 | MS.gene89000 | 0.842135 | 3.11E-58 | -1.69E-46 |
| MS.gene05733 | MS.gene89000 | 0.854821 | 9.53E-62 | -1.69E-46 |
| MS.gene057439 | MS.gene89000 | 0.806126 | 9.57E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene89000 | 0.835404 | 1.71E-56 | -1.69E-46 |
| MS.gene057449 | MS.gene89000 | 0.828248 | 9.99E-55 | -1.69E-46 |
| MS.gene057450 | MS.gene89000 | 0.842049 | 3.28E-58 | -1.69E-46 |
| MS.gene057749 | MS.gene89000 | 0.825079 | 5.70E-54 | -1.69E-46 |
| MS.gene057796 | MS.gene89000 | 0.813839 | 2.09E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene89000 | 0.822878 | 1.87E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene89000 | 0.860483 | 2.00E-63 | -1.69E-46 |
| MS.gene05806 | MS.gene89000 | 0.801224 | 9.96E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene89000 | 0.862515 | 4.80E-64 | -1.69E-46 |
| MS.gene05811 | MS.gene89000 | 0.866268 | 3.23E-65 | -1.69E-46 |
| MS.gene058233 | MS.gene89000 | 0.831331 | 1.77E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene89000 | 0.855136 | 7.73E-62 | -1.69E-46 |
| MS.gene058365 | MS.gene89000 | 0.827324 | 1.67E-54 | -1.69E-46 |
| MS.gene05842 | MS.gene89000 | 0.800554 | 1.36E-48 | -1.69E-46 |
| MS.gene058537 | MS.gene89000 | -0.822451 | 2.35E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene89000 | 0.87806 | 3.81E-69 | -1.69E-46 |
| MS.gene058787 | MS.gene89000 | 0.844892 | 5.70E-59 | -1.69E-46 |
| MS.gene058845 | MS.gene89000 | 0.829997 | 3.76E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene89000 | 0.835786 | 1.37E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene89000 | 0.863717 | 2.04E-64 | -1.69E-46 |
| MS.gene059294 | MS.gene89000 | 0.827201 | 1.78E-54 | -1.69E-46 |
| MS.gene059326 | MS.gene89000 | 0.820368 | 7.12E-53 | -1.69E-46 |
| MS.gene059342 | MS.gene89000 | 0.818123 | 2.31E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene89000 | 0.840728 | 7.30E-58 | -1.69E-46 |
| MS.gene059536 | MS.gene89000 | 0.844988 | 5.37E-59 | -1.69E-46 |
| MS.gene059597 | MS.gene89000 | 0.880531 | 5.08E-70 | -1.69E-46 |
| MS.gene05959 | MS.gene89000 | 0.818147 | 2.28E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene89000 | 0.879193 | 1.52E-69 | -1.69E-46 |
| MS.gene059688 | MS.gene89000 | 0.86802 | 8.91E-66 | -1.69E-46 |
| MS.gene059692 | MS.gene89000 | 0.880164 | 6.88E-70 | -1.69E-46 |
| MS.gene059695 | MS.gene89000 | 0.881277 | 2.74E-70 | -1.69E-46 |
| MS.gene059708 | MS.gene89000 | 0.841912 | 3.56E-58 | -1.69E-46 |
| MS.gene059711 | MS.gene89000 | 0.802209 | 6.25E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene89000 | 0.834942 | 2.24E-56 | -1.69E-46 |
| MS.gene059894 | MS.gene89000 | 0.866181 | 3.44E-65 | -1.69E-46 |
| MS.gene059960 | MS.gene89000 | 0.843579 | 1.28E-58 | -1.69E-46 |
| MS.gene059974 | MS.gene89000 | 0.825196 | 5.35E-54 | -1.69E-46 |
| MS.gene060005 | MS.gene89000 | 0.824067 | 9.87E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene89000 | 0.84432 | 8.13E-59 | -1.69E-46 |
| MS.gene060403 | MS.gene89000 | 0.819229 | 1.30E-52 | -1.69E-46 |
| MS.gene060407 | MS.gene89000 | 0.823986 | 1.03E-53 | -1.69E-46 |
| MS.gene060559 | MS.gene89000 | 0.837092 | 6.37E-57 | -1.69E-46 |
| MS.gene060804 | MS.gene89000 | 0.822743 | 2.01E-53 | -1.69E-46 |
| MS.gene060818 | MS.gene89000 | 0.809861 | 1.53E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene89000 | 0.80384 | 2.88E-49 | -1.69E-46 |
| MS.gene060986 | MS.gene89000 | 0.800595 | 1.34E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene89000 | 0.860803 | 1.60E-63 | -1.69E-46 |
| MS.gene061051 | MS.gene89000 | -0.84572 | 3.40E-59 | -1.69E-46 |
| MS.gene061200 | MS.gene89000 | 0.835662 | 1.47E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89000.t1 | MTR_6g038640 | 96.676 | 361 | 12 | 0 | 1 | 361 | 1 | 361 | 0.0 | 723 |
| MS.gene89000.t1 | MTR_6g038650 | 93.075 | 361 | 20 | 2 | 1 | 361 | 1 | 356 | 0.0 | 688 |
| MS.gene89000.t1 | MTR_1g097250 | 69.859 | 355 | 107 | 0 | 7 | 361 | 6 | 360 | 0.0 | 530 |
| MS.gene89000.t1 | MTR_6g038390 | 62.291 | 358 | 135 | 0 | 3 | 360 | 5 | 362 | 1.53e-174 | 489 |
| MS.gene89000.t1 | MTR_6g038350 | 63.687 | 358 | 130 | 0 | 3 | 360 | 5 | 362 | 1.87e-168 | 474 |
| MS.gene89000.t1 | MTR_6g038370 | 63.687 | 358 | 130 | 0 | 3 | 360 | 5 | 362 | 1.87e-168 | 474 |
| MS.gene89000.t1 | MTR_6g066230 | 54.821 | 363 | 159 | 2 | 1 | 359 | 1 | 362 | 5.27e-148 | 422 |
| MS.gene89000.t1 | MTR_3g064900 | 54.270 | 363 | 162 | 2 | 1 | 359 | 1 | 363 | 2.59e-140 | 403 |
| MS.gene89000.t1 | MTR_6g038310 | 63.934 | 122 | 43 | 1 | 3 | 123 | 5 | 126 | 2.30e-42 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89000.t1 | AT4G09670 | 63.231 | 359 | 132 | 0 | 1 | 359 | 1 | 359 | 2.17e-179 | 502 |
| MS.gene89000.t1 | AT1G34200 | 56.983 | 358 | 142 | 2 | 1 | 357 | 1 | 347 | 2.17e-148 | 423 |
| MS.gene89000.t1 | AT1G66130 | 43.207 | 368 | 196 | 7 | 1 | 359 | 1 | 364 | 7.59e-97 | 292 |
Find 98 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGAAAACACAACTGATTT+TGG | 0.144870 | 6.4:+13100414 | MS.gene89000:CDS |
| ATCATAGGAGCCGTAGATTT+TGG | 0.215038 | 6.4:-13096906 | None:intergenic |
| GGAATGTGGGGTGCAGTTTA+TGG | 0.217349 | 6.4:+13097093 | MS.gene89000:CDS |
| CCCTTCATCACCTCCGTTCT+AGG | 0.227507 | 6.4:-13097139 | None:intergenic |
| CCAATCCGTTTCGGCATTCT+CGG | 0.279201 | 6.4:+13096752 | MS.gene89000:CDS |
| CTTGTGGCGCTTCTTTATAT+TGG | 0.296195 | 6.4:+13100077 | MS.gene89000:CDS |
| CAGCAGTTATATCCATTGTT+AGG | 0.316283 | 6.4:-13100144 | None:intergenic |
| TTGATGATCTTGTCACTAGA+TGG | 0.323932 | 6.4:+13100257 | MS.gene89000:CDS |
| TCTCCCTCAGGAGGCTCTTA+TGG | 0.328360 | 6.4:+13100315 | MS.gene89000:CDS |
| TGGAGGATGAGGAGAGGTTT+GGG | 0.333190 | 6.4:+13097167 | MS.gene89000:CDS |
| TTGGAGGATGAGGAGAGGTT+TGG | 0.340484 | 6.4:+13097166 | MS.gene89000:CDS |
| CTCGACGCTCTTGGCTCTCT+TGG | 0.345356 | 6.4:+13099941 | MS.gene89000:CDS |
| TGCCACCAAATGAGAAAATT+CGG | 0.346134 | 6.4:-13100341 | None:intergenic |
| TTGTGGCGCTTCTTTATATT+GGG | 0.348945 | 6.4:+13100078 | MS.gene89000:CDS |
| ACGTAAACAGCATCAACATT+AGG | 0.358563 | 6.4:-13096944 | None:intergenic |
| CGACGACGTTGCATGTGAAA+TGG | 0.359695 | 6.4:+13096975 | MS.gene89000:CDS |
| GAGCCAAGAGCGTCGAGATC+TGG | 0.364195 | 6.4:-13099935 | None:intergenic |
| ACGCGAAACCGGAGAAGAAA+TGG | 0.375990 | 6.4:+13100380 | MS.gene89000:CDS |
| GGCGGTGGCTGCGGCGAAGA+AGG | 0.379367 | 6.4:+13096997 | MS.gene89000:CDS |
| ATTCACACCTGCTTTACATT+TGG | 0.392125 | 6.4:+13099872 | MS.gene89000:CDS |
| CGTGAAGGCTTCGATTGATA+AGG | 0.397262 | 6.4:+13100441 | MS.gene89000:CDS |
| ATGTCGTTCTCGAGAAAATC+AGG | 0.401057 | 6.4:-13099902 | None:intergenic |
| ATAACTGCTGTTGGGACAAA+AGG | 0.403721 | 6.4:+13100157 | MS.gene89000:CDS |
| TGATGATCTTGTCACTAGAT+GGG | 0.427776 | 6.4:+13100258 | MS.gene89000:CDS |
| GCGGCTTCCGACGGCGGAGA+TGG | 0.428663 | 6.4:-13096831 | None:intergenic |
| GTGAAGGCTTCGATTGATAA+GGG | 0.430595 | 6.4:+13100442 | MS.gene89000:CDS |
| AAGCCAGATCTCGACGCTCT+TGG | 0.439470 | 6.4:+13099932 | MS.gene89000:CDS |
| GTTTGCGAAGGTGGTTGCTT+TGG | 0.442057 | 6.4:-13096861 | None:intergenic |
| CGTAAACAGCATCAACATTA+GGG | 0.444017 | 6.4:-13096943 | None:intergenic |
| GCGGTGGCTGCGGCGAAGAA+GGG | 0.444964 | 6.4:+13096998 | MS.gene89000:CDS |
| ATAGTCGGCCATTTCTTCTC+CGG | 0.455501 | 6.4:-13100388 | None:intergenic |
| TCCTAGAACGGAGGTGATGA+AGG | 0.459813 | 6.4:+13097138 | MS.gene89000:CDS |
| TGTGAAATGGGCGGTGGCTG+CGG | 0.466954 | 6.4:+13096988 | MS.gene89000:CDS |
| TGAAGGTGTGTGAGGAATGT+GGG | 0.467660 | 6.4:+13097080 | MS.gene89000:CDS |
| CTTATCAATCGAAGCCTTCA+CGG | 0.476737 | 6.4:-13100440 | None:intergenic |
| CCGAGAATGCCGAAACGGAT+TGG | 0.477746 | 6.4:-13096752 | None:intergenic |
| GAATGGCGCGTGAGAGTTTG+CGG | 0.478095 | 6.4:-13096790 | None:intergenic |
| GACGACGTTGCATGTGAAAT+GGG | 0.478723 | 6.4:+13096976 | MS.gene89000:CDS |
| GTTGTTTGAGTTTGCGAAGG+TGG | 0.481636 | 6.4:-13096870 | None:intergenic |
| GCTCTCTTGGCGACGAAGGA+TGG | 0.484511 | 6.4:+13099954 | MS.gene89000:CDS |
| AGAAATGGCCGACTATTAGT+AGG | 0.490131 | 6.4:+13100395 | MS.gene89000:CDS |
| GAGGTTTGGGAAGGTTAAAT+CGG | 0.493508 | 6.4:+13097180 | MS.gene89000:CDS |
| ATCAGCACCAAATGTAAAGC+AGG | 0.503357 | 6.4:-13099879 | None:intergenic |
| TGTGGGGTGCAGTTTATGGA+TGG | 0.503410 | 6.4:+13097097 | MS.gene89000:CDS |
| GATGATCTTGTCACTAGATG+GGG | 0.507725 | 6.4:+13100259 | MS.gene89000:CDS |
| GGAGAGGGTGCGGCTTCCGA+CGG | 0.508639 | 6.4:-13096840 | None:intergenic |
| ACAATGGATATAACTGCTGT+TGG | 0.509647 | 6.4:+13100148 | MS.gene89000:CDS |
| CGGTGGCTGCGGCGAAGAAG+GGG | 0.510716 | 6.4:+13096999 | MS.gene89000:CDS |
| AATGCCGAAACGGATTGGTT+CGG | 0.512845 | 6.4:-13096747 | None:intergenic |
| GTGAAGGTGTGTGAGGAATG+TGG | 0.518546 | 6.4:+13097079 | MS.gene89000:CDS |
| CAATGGATATAACTGCTGTT+GGG | 0.519696 | 6.4:+13100149 | MS.gene89000:CDS |
| CAAACCGAACCAATCCGTTT+CGG | 0.521658 | 6.4:+13096743 | MS.gene89000:CDS |
| CTTGGCTCTCTTGGCGACGA+AGG | 0.521752 | 6.4:+13099950 | MS.gene89000:CDS |
| TCCTTCACACTAACCGCCAC+AGG | 0.522525 | 6.4:-13097043 | None:intergenic |
| GACGGCGGAGATGGTGGCGG+TGG | 0.526330 | 6.4:-13096822 | None:intergenic |
| TTTCATTCCTGAATCTGTAC+AGG | 0.527130 | 6.4:-13100472 | None:intergenic |
| GCTTCTTTATATTGGGAAGA+TGG | 0.528569 | 6.4:+13100085 | MS.gene89000:CDS |
| GCCTGTGGCGGTTAGTGTGA+AGG | 0.531923 | 6.4:+13097042 | MS.gene89000:CDS |
| TGGTTGCTTTGGAGAGGGTG+CGG | 0.534251 | 6.4:-13096850 | None:intergenic |
| TCCGACGGCGGAGATGGTGG+CGG | 0.536667 | 6.4:-13096825 | None:intergenic |
| CGAAGGTGGTTGCTTTGGAG+AGG | 0.541429 | 6.4:-13096856 | None:intergenic |
| ACTCCAGCTTTATTAAGCAC+TGG | 0.541763 | 6.4:-13100046 | None:intergenic |
| CACAACCGAGAATGCCGAAA+CGG | 0.548896 | 6.4:-13096757 | None:intergenic |
| GCTTCCGACGGCGGAGATGG+TGG | 0.552911 | 6.4:-13096828 | None:intergenic |
| AGATGGTGGCGGTGGATGAG+AGG | 0.554511 | 6.4:-13096814 | None:intergenic |
| ACATGCAACGTCGTCGGTAA+CGG | 0.555872 | 6.4:-13096968 | None:intergenic |
| AATGGCGCGTGAGAGTTTGC+GGG | 0.557508 | 6.4:-13096789 | None:intergenic |
| GGATGAGGAGAGGTTTGGGA+AGG | 0.557687 | 6.4:+13097171 | MS.gene89000:CDS |
| GGCGGTGGATGAGAGGAGAA+TGG | 0.559727 | 6.4:-13096807 | None:intergenic |
| TTTCTTATCTAACCTAACAA+TGG | 0.559985 | 6.4:+13100132 | MS.gene89000:CDS |
| AATAGAAAACGATCTCCCTC+AGG | 0.562369 | 6.4:+13100303 | MS.gene89000:CDS |
| CCTAGAACGGAGGTGATGAA+GGG | 0.571024 | 6.4:+13097139 | MS.gene89000:CDS |
| CCTCCCACCGCCAAAATCTA+CGG | 0.577677 | 6.4:+13096896 | MS.gene89000:CDS |
| GAGCCAGTGCTTAATAAAGC+TGG | 0.580556 | 6.4:+13100043 | MS.gene89000:CDS |
| ACCGCCACCATCTCCGCCGT+CGG | 0.584263 | 6.4:+13096824 | MS.gene89000:CDS |
| GAGGGTGCGGCTTCCGACGG+CGG | 0.587887 | 6.4:-13096837 | None:intergenic |
| ATTGTGTTAGAGCAATTCTG+TGG | 0.595898 | 6.4:+13099978 | MS.gene89000:CDS |
| GAAGGTGGTTGCTTTGGAGA+GGG | 0.596573 | 6.4:-13096855 | None:intergenic |
| TTTCGGCATTCTCGGTTGTG+CGG | 0.598815 | 6.4:+13096760 | MS.gene89000:CDS |
| GTTGCATGTGAAATGGGCGG+TGG | 0.605659 | 6.4:+13096982 | MS.gene89000:CDS |
| GAAGTTGTTTGAGTTTGCGA+AGG | 0.607536 | 6.4:-13096873 | None:intergenic |
| GTCGTCAAGAACTTCATCAT+AGG | 0.609054 | 6.4:-13096921 | None:intergenic |
| GTGGGGTGCAGTTTATGGAT+GGG | 0.617072 | 6.4:+13097098 | MS.gene89000:CDS |
| GGAGTTTGATGAGATTGTGA+AGG | 0.628031 | 6.4:+13097063 | MS.gene89000:CDS |
| GTGGATGCATCATCCTAGAA+CGG | 0.629139 | 6.4:+13097126 | MS.gene89000:CDS |
| TGAGATTGTGAAGGTGTGTG+AGG | 0.632007 | 6.4:+13097072 | MS.gene89000:CDS |
| GCTGGAGTGATTCTATCTTG+TGG | 0.635997 | 6.4:+13100061 | MS.gene89000:CDS |
| GAAGGTGTGTGAGGAATGTG+GGG | 0.637070 | 6.4:+13097081 | MS.gene89000:CDS |
| TTGTGTTAGAGCAATTCTGT+GGG | 0.638125 | 6.4:+13099979 | MS.gene89000:CDS |
| CATTTCACATGCAACGTCGT+CGG | 0.650632 | 6.4:-13096974 | None:intergenic |
| AGAAAACGATCTCCCTCAGG+AGG | 0.651262 | 6.4:+13100306 | MS.gene89000:CDS |
| TTACCATAAGAGCCTCCTGA+GGG | 0.654472 | 6.4:-13100318 | None:intergenic |
| AGTTTATGGATGGGACTATG+TGG | 0.660551 | 6.4:+13097107 | MS.gene89000:CDS |
| GATGCATCATCCTAGAACGG+AGG | 0.667515 | 6.4:+13097129 | MS.gene89000:CDS |
| CTAGAACGGAGGTGATGAAG+GGG | 0.676280 | 6.4:+13097140 | MS.gene89000:CDS |
| TTTGCTTGAGAAGCCTGTGG+CGG | 0.688730 | 6.4:+13097030 | MS.gene89000:CDS |
| GTTACCATAAGAGCCTCCTG+AGG | 0.717914 | 6.4:-13100319 | None:intergenic |
| GACGTTGCATGTGAAATGGG+CGG | 0.751365 | 6.4:+13096979 | MS.gene89000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACTTAATGTTTAAGATT+GGG | - | chr6.4:13099763-13099782 | None:intergenic | 15.0% |
| !!! | AGATTATTTTTTAGAGATTT+AGG | + | chr6.4:13097801-13097820 | MS.gene89000:intron | 15.0% |
| !!! | GATTATTTTTTAGAGATTTA+GGG | + | chr6.4:13097802-13097821 | MS.gene89000:intron | 15.0% |
| !!! | TGATTATCTAAAATTATTAG+CGG | + | chr6.4:13097347-13097366 | MS.gene89000:intron | 15.0% |
| !! | ATAATGTTGATGTATAAACT+AGG | + | chr6.4:13097225-13097244 | MS.gene89000:intron | 20.0% |
| !! | ATTAATGTATGAAGCTAAAA+GGG | + | chr6.4:13098087-13098106 | MS.gene89000:intron | 20.0% |
| !! | CCTCTTTATTAAATTATCAT+CGG | - | chr6.4:13097448-13097467 | None:intergenic | 20.0% |
| !! | TAAGAAAATAGAAGTGATTT+GGG | + | chr6.4:13098032-13098051 | MS.gene89000:intron | 20.0% |
| !! | TGTATAAATAATGAGAATGT+AGG | + | chr6.4:13098277-13098296 | MS.gene89000:intron | 20.0% |
| !! | TTAAGAAAATAGAAGTGATT+TGG | + | chr6.4:13098031-13098050 | MS.gene89000:intron | 20.0% |
| !! | TTGAAATTATAAGAGTTAGA+CGG | + | chr6.4:13098721-13098740 | MS.gene89000:intron | 20.0% |
| !!! | GAAAACTTAATGTTTAAGAT+TGG | - | chr6.4:13099764-13099783 | None:intergenic | 20.0% |
| !!! | GAAACATGATTTTAATGTTA+TGG | + | chr6.4:13098138-13098157 | MS.gene89000:intron | 20.0% |
| !!! | TATGATATTGATGATGATTT+AGG | + | chr6.4:13097717-13097736 | MS.gene89000:intron | 20.0% |
| !!! | TTTTCATTTCGTAAATTTGA+AGG | + | chr6.4:13099205-13099224 | MS.gene89000:intron | 20.0% |
| !!! | TTTTGGTTATCTAAATTCTA+TGG | - | chr6.4:13099245-13099264 | None:intergenic | 20.0% |
| ! | AAAGGGACTAAATTGATTAT+CGG | + | chr6.4:13099161-13099180 | MS.gene89000:intron | 25.0% |
| ! | AAGAAAATAGAAGCGATTTA+GGG | + | chr6.4:13097613-13097632 | MS.gene89000:intron | 25.0% |
| ! | AAGAAAATAGAAGTGATTTG+GGG | + | chr6.4:13098033-13098052 | MS.gene89000:intron | 25.0% |
| ! | AGAAGAGTTAAAAAAAATCC+TGG | + | chr6.4:13099365-13099384 | MS.gene89000:intron | 25.0% |
| ! | AGGTACAAAAAACAATTCAA+AGG | - | chr6.4:13098392-13098411 | None:intergenic | 25.0% |
| ! | ATTATCTATACTCATCCAAT+GGG | + | chr6.4:13098610-13098629 | MS.gene89000:intron | 25.0% |
| ! | CAGTAAATTCTGATGAATTT+GGG | + | chr6.4:13099030-13099049 | MS.gene89000:intron | 25.0% |
| ! | CATTAATGTATGAAGCTAAA+AGG | + | chr6.4:13098086-13098105 | MS.gene89000:intron | 25.0% |
| ! | CCGATGATAATTTAATAAAG+AGG | + | chr6.4:13097445-13097464 | MS.gene89000:intron | 25.0% |
| ! | GAAAGATGATACTTGATATT+TGG | + | chr6.4:13098301-13098320 | MS.gene89000:intron | 25.0% |
| ! | TAAGAAAATAGAAGCGATTT+AGG | + | chr6.4:13097612-13097631 | MS.gene89000:intron | 25.0% |
| ! | TAATACAACCTTCATATACT+TGG | - | chr6.4:13098756-13098775 | None:intergenic | 25.0% |
| ! | TCAGTAAATTCTGATGAATT+TGG | + | chr6.4:13099029-13099048 | MS.gene89000:intron | 25.0% |
| ! | TTATTGGATGAAATTCATGT+GGG | - | chr6.4:13097550-13097569 | None:intergenic | 25.0% |
| ! | TTTATCCAGTTAGATAGAAA+GGG | + | chr6.4:13099144-13099163 | MS.gene89000:intron | 25.0% |
| ! | TTTATTGGATGAAATTCATG+TGG | - | chr6.4:13097551-13097570 | None:intergenic | 25.0% |
| ! | TTTCTTATCTAACCTAACAA+TGG | + | chr6.4:13100132-13100151 | MS.gene89000:CDS | 25.0% |
| !! | ATGATTTAGGATAATAGAAG+TGG | + | chr6.4:13097730-13097749 | MS.gene89000:intron | 25.0% |
| !! | TGTCACGTAATTTTTCATTT+TGG | + | chr6.4:13099392-13099411 | MS.gene89000:intron | 25.0% |
| !! | TTAAGAGTAACTGAACATTT+TGG | - | chr6.4:13099262-13099281 | None:intergenic | 25.0% |
| !! | TTTTATCCAGTTAGATAGAA+AGG | + | chr6.4:13099143-13099162 | MS.gene89000:intron | 25.0% |
| !!! | GAGATTAGATCACTTTTATA+CGG | + | chr6.4:13098172-13098191 | MS.gene89000:intron | 25.0% |
| !!! | TTTCTGTTGGTTCTTAATTT+TGG | - | chr6.4:13099675-13099694 | None:intergenic | 25.0% |
| AAAATTACGTGACATTAACC+AGG | - | chr6.4:13099386-13099405 | None:intergenic | 30.0% | |
| ACGAGTACATTTGATATGTT+GGG | - | chr6.4:13098516-13098535 | None:intergenic | 30.0% | |
| AGGATAATAGAAGTGGTTTA+GGG | + | chr6.4:13097737-13097756 | MS.gene89000:intron | 30.0% | |
| AGTTTCTGTACCACATAAAA+TGG | + | chr6.4:13098579-13098598 | MS.gene89000:intron | 30.0% | |
| ATTCAGTGTAATTATCTGTG+TGG | - | chr6.4:13097323-13097342 | None:intergenic | 30.0% | |
| CACTGATATATGGTTTGATT+TGG | + | chr6.4:13099839-13099858 | MS.gene89000:intron | 30.0% | |
| CATTATCTATACTCATCCAA+TGG | + | chr6.4:13098609-13098628 | MS.gene89000:intron | 30.0% | |
| GTTCAATAATGAGTCTCTAA+GGG | - | chr6.4:13099592-13099611 | None:intergenic | 30.0% | |
| GTTTCTGTACCACATAAAAT+GGG | + | chr6.4:13098580-13098599 | MS.gene89000:intron | 30.0% | |
| GTTTGATACTCAAGAAACAT+AGG | + | chr6.4:13098210-13098229 | MS.gene89000:intron | 30.0% | |
| TAACACAGCATAATAACTGT+TGG | - | chr6.4:13099789-13099808 | None:intergenic | 30.0% | |
| TACGAGTACATTTGATATGT+TGG | - | chr6.4:13098517-13098536 | None:intergenic | 30.0% | |
| TACTGAATTAGCTGAAGAAA+GGG | - | chr6.4:13099015-13099034 | None:intergenic | 30.0% | |
| TAGGATAATAGAAGTGGTTT+AGG | + | chr6.4:13097736-13097755 | MS.gene89000:intron | 30.0% | |
| TATGAAGCTAAAAGGGATTT+AGG | + | chr6.4:13098094-13098113 | MS.gene89000:intron | 30.0% | |
| TCAATACTATAGCTTTCTGT+TGG | - | chr6.4:13099688-13099707 | None:intergenic | 30.0% | |
| TCCAATAAAATAGTGAGTGT+TGG | + | chr6.4:13097562-13097581 | MS.gene89000:intron | 30.0% | |
| TGTTCAATAATGAGTCTCTA+AGG | - | chr6.4:13099593-13099612 | None:intergenic | 30.0% | |
| TTACTGAATTAGCTGAAGAA+AGG | - | chr6.4:13099016-13099035 | None:intergenic | 30.0% | |
| TTCAGTGTAATTATCTGTGT+GGG | - | chr6.4:13097322-13097341 | None:intergenic | 30.0% | |
| TTGGCTTAGTGTATAGATAA+TGG | + | chr6.4:13099318-13099337 | MS.gene89000:intron | 30.0% | |
| ! | ATTATCGGTTATCAACTTCA+TGG | + | chr6.4:13099176-13099195 | MS.gene89000:intron | 30.0% |
| ! | GATGCTTTCTTTTCTTCATA+AGG | - | chr6.4:13100211-13100230 | None:intergenic | 30.0% |
| ! | GATTTAGGGTTCATTTGTTA+TGG | + | chr6.4:13097816-13097835 | MS.gene89000:intron | 30.0% |
| ! | TCCAACACTCACTATTTTAT+TGG | - | chr6.4:13097566-13097585 | None:intergenic | 30.0% |
| ! | TCGCTTCTATTTTCTTAAAG+AGG | - | chr6.4:13097609-13097628 | None:intergenic | 30.0% |
| ! | TGTGTTTTCCTACTAATAGT+CGG | - | chr6.4:13100406-13100425 | None:intergenic | 30.0% |
| ! | TTTTCTATTACGTGCTTACT+CGG | - | chr6.4:13100292-13100311 | None:intergenic | 30.0% |
| !! | TAGGAAAACACAACTGATTT+TGG | + | chr6.4:13100414-13100433 | MS.gene89000:CDS | 30.0% |
| !!! | GAATTGTTTTTTGTACCTAG+CGG | + | chr6.4:13098394-13098413 | MS.gene89000:intron | 30.0% |
| AAAGAAACCCAAAGATGCAA+AGG | - | chr6.4:13098916-13098935 | None:intergenic | 35.0% | |
| AAAGAACTGCAAAAAGGCAA+GGG | - | chr6.4:13098943-13098962 | None:intergenic | 35.0% | |
| AAGTTCACACACACTAATTG+TGG | + | chr6.4:13098451-13098470 | MS.gene89000:intron | 35.0% | |
| ACAATGGATATAACTGCTGT+TGG | + | chr6.4:13100148-13100167 | MS.gene89000:CDS | 35.0% | |
| ACGTAAACAGCATCAACATT+AGG | - | chr6.4:13096947-13096966 | None:intergenic | 35.0% | |
| ATAATGTCATCAAATCCACG+CGG | - | chr6.4:13097501-13097520 | None:intergenic | 35.0% | |
| ATCTGAAAACATACTTCAGC+TGG | + | chr6.4:13099089-13099108 | MS.gene89000:intron | 35.0% | |
| ATTCACACCTGCTTTACATT+TGG | + | chr6.4:13099872-13099891 | MS.gene89000:CDS | 35.0% | |
| ATTGACTGAGCTGCAATTAT+AGG | + | chr6.4:13098544-13098563 | MS.gene89000:intron | 35.0% | |
| ATTGTGTTAGAGCAATTCTG+TGG | + | chr6.4:13099978-13099997 | MS.gene89000:CDS | 35.0% | |
| CAAATTCAAAAACGCGAAAC+CGG | + | chr6.4:13100369-13100388 | MS.gene89000:CDS | 35.0% | |
| CAATAGTCGCAAGTTTAAGT+TGG | + | chr6.4:13099299-13099318 | MS.gene89000:intron | 35.0% | |
| CAATGGATATAACTGCTGTT+GGG | + | chr6.4:13100149-13100168 | MS.gene89000:CDS | 35.0% | |
| CAGCAGTTATATCCATTGTT+AGG | - | chr6.4:13100147-13100166 | None:intergenic | 35.0% | |
| CGAGTACATTTGATATGTTG+GGG | - | chr6.4:13098515-13098534 | None:intergenic | 35.0% | |
| CGTAAACAGCATCAACATTA+GGG | - | chr6.4:13096946-13096965 | None:intergenic | 35.0% | |
| GCTTCTTTATATTGGGAAGA+TGG | + | chr6.4:13100085-13100104 | MS.gene89000:CDS | 35.0% | |
| GGTTATCTAAATTCTATGGC+AGG | - | chr6.4:13099241-13099260 | None:intergenic | 35.0% | |
| TACAACCTTCATATACTTGG+CGG | - | chr6.4:13098753-13098772 | None:intergenic | 35.0% | |
| TATATCAGTGCAGAACTGTA+CGG | - | chr6.4:13099829-13099848 | None:intergenic | 35.0% | |
| TGATGATCTTGTCACTAGAT+GGG | + | chr6.4:13100258-13100277 | MS.gene89000:CDS | 35.0% | |
| TGCCACCAAATGAGAAAATT+CGG | - | chr6.4:13100344-13100363 | None:intergenic | 35.0% | |
| TTAGTCCCTTTCTATCTAAC+TGG | - | chr6.4:13099152-13099171 | None:intergenic | 35.0% | |
| TTATTCCGCCAAGTATATGA+AGG | + | chr6.4:13098745-13098764 | MS.gene89000:intron | 35.0% | |
| TTCACTCATTTGATAAGCTC+AGG | - | chr6.4:13098686-13098705 | None:intergenic | 35.0% | |
| TTGTGGCGCTTCTTTATATT+GGG | + | chr6.4:13100078-13100097 | MS.gene89000:CDS | 35.0% | |
| TTGTGTTAGAGCAATTCTGT+GGG | + | chr6.4:13099979-13099998 | MS.gene89000:CDS | 35.0% | |
| ! | AACCGAATTTTCTCATTTGG+TGG | + | chr6.4:13100339-13100358 | MS.gene89000:CDS | 35.0% |
| ! | ATAATGAGTCTCTAAGGGAA+AGG | - | chr6.4:13099587-13099606 | None:intergenic | 35.0% |
| ! | CGATACGCTAATACTGTTTT+AGG | - | chr6.4:13100022-13100041 | None:intergenic | 35.0% |
| ! | GAAGTGATTTGGGGTTAAAA+CGG | + | chr6.4:13098042-13098061 | MS.gene89000:intron | 35.0% |
| ! | GGTAACCGAATTTTCTCATT+TGG | + | chr6.4:13100336-13100355 | MS.gene89000:CDS | 35.0% |
| ! | GTAGTCCTTTTGTTAATCAG+CGG | + | chr6.4:13098805-13098824 | MS.gene89000:intron | 35.0% |
| ! | TACAGTTCTGCACTGATATA+TGG | + | chr6.4:13099829-13099848 | MS.gene89000:intron | 35.0% |
| ! | TAGTCCTTTTGTTAATCAGC+GGG | + | chr6.4:13098806-13098825 | MS.gene89000:intron | 35.0% |
| ! | TGGATTTGATGACATTATGC+CGG | + | chr6.4:13097503-13097522 | MS.gene89000:intron | 35.0% |
| ! | TGTATTTGTTGACGATGTCT+TGG | + | chr6.4:13099558-13099577 | MS.gene89000:intron | 35.0% |
| ! | TTGATGATCTTGTCACTAGA+TGG | + | chr6.4:13100257-13100276 | MS.gene89000:CDS | 35.0% |
| ! | TTTTTGCAGTTCTTTGTGCT+GGG | + | chr6.4:13098948-13098967 | MS.gene89000:intron | 35.0% |
| !! | ATCCAATGGGCTATTGATTT+GGG | + | chr6.4:13098623-13098642 | MS.gene89000:intron | 35.0% |
| !! | GATTTAGGCTCTGTTTTTCA+CGG | + | chr6.4:13098109-13098128 | MS.gene89000:intron | 35.0% |
| AATAGAAAACGATCTCCCTC+AGG | + | chr6.4:13100303-13100322 | MS.gene89000:CDS | 40.0% | |
| AGAAATGGCCGACTATTAGT+AGG | + | chr6.4:13100395-13100414 | MS.gene89000:CDS | 40.0% | |
| AGTTTATGGATGGGACTATG+TGG | + | chr6.4:13097107-13097126 | MS.gene89000:CDS | 40.0% | |
| ATAACTGCTGTTGGGACAAA+AGG | + | chr6.4:13100157-13100176 | MS.gene89000:CDS | 40.0% | |
| ATCAGCACCAAATGTAAAGC+AGG | - | chr6.4:13099882-13099901 | None:intergenic | 40.0% | |
| ATGTCGTTCTCGAGAAAATC+AGG | - | chr6.4:13099905-13099924 | None:intergenic | 40.0% | |
| CAAAGAACTGCAAAAAGGCA+AGG | - | chr6.4:13098944-13098963 | None:intergenic | 40.0% | |
| CAGCACAAAGAACTGCAAAA+AGG | - | chr6.4:13098949-13098968 | None:intergenic | 40.0% | |
| CTATCTGTCAGTATCATGTC+AGG | - | chr6.4:13097989-13098008 | None:intergenic | 40.0% | |
| CTTATCAATCGAAGCCTTCA+CGG | - | chr6.4:13100443-13100462 | None:intergenic | 40.0% | |
| CTTGTGGCGCTTCTTTATAT+TGG | + | chr6.4:13100077-13100096 | MS.gene89000:CDS | 40.0% | |
| GAGGTTTGGGAAGGTTAAAT+CGG | + | chr6.4:13097180-13097199 | MS.gene89000:CDS | 40.0% | |
| GATGATCTTGTCACTAGATG+GGG | + | chr6.4:13100259-13100278 | MS.gene89000:CDS | 40.0% | |
| GCAACGACAGCAAAAACAAT+AGG | - | chr6.4:13098856-13098875 | None:intergenic | 40.0% | |
| GCATAATAGAGATCAGCAGA+AGG | + | chr6.4:13099055-13099074 | MS.gene89000:intron | 40.0% | |
| GGAGTTTGATGAGATTGTGA+AGG | + | chr6.4:13097063-13097082 | MS.gene89000:CDS | 40.0% | |
| GGCGTTTCTTCTGAATCAAA+TGG | + | chr6.4:13099528-13099547 | MS.gene89000:intron | 40.0% | |
| GTCGTCAAGAACTTCATCAT+AGG | - | chr6.4:13096924-13096943 | None:intergenic | 40.0% | |
| GTGAAGGCTTCGATTGATAA+GGG | + | chr6.4:13100442-13100461 | MS.gene89000:CDS | 40.0% | |
| TTAATGTCTGTACGAGCAAG+AGG | + | chr6.4:13098326-13098345 | MS.gene89000:intron | 40.0% | |
| TTTGATTCAGAAGAAACGCC+AGG | - | chr6.4:13099528-13099547 | None:intergenic | 40.0% | |
| ! | AGTCCTTTTGTTAATCAGCG+GGG | + | chr6.4:13098807-13098826 | MS.gene89000:intron | 40.0% |
| ! | ATCATAGGAGCCGTAGATTT+TGG | - | chr6.4:13096909-13096928 | None:intergenic | 40.0% |
| ! | ATGCACAAGCCCATTTTATG+TGG | - | chr6.4:13098592-13098611 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGTTCTTTGTGC+TGG | + | chr6.4:13098947-13098966 | MS.gene89000:intron | 40.0% |
| ! | GAAGTTGTTTGAGTTTGCGA+AGG | - | chr6.4:13096876-13096895 | None:intergenic | 40.0% |
| ! | TTTTGAGCCTGTACAGATTC+AGG | + | chr6.4:13100465-13100484 | MS.gene89000:CDS | 40.0% |
| !! | ACTCCAGCTTTATTAAGCAC+TGG | - | chr6.4:13100049-13100068 | None:intergenic | 40.0% |
| !! | CACACACTTTTTGTACCTAG+CGG | + | chr6.4:13098426-13098445 | MS.gene89000:intron | 40.0% |
| !! | CATCCAATGGGCTATTGATT+TGG | + | chr6.4:13098622-13098641 | MS.gene89000:intron | 40.0% |
| !! | CTTGTTTTCACCAAGTGTGT+TGG | + | chr6.4:13098890-13098909 | MS.gene89000:intron | 40.0% |
| !! | TCCAATGGGCTATTGATTTG+GGG | + | chr6.4:13098624-13098643 | MS.gene89000:intron | 40.0% |
| !! | TGTGGAGAAAAGAAGCATTG+CGG | + | chr6.4:13098469-13098488 | MS.gene89000:intron | 40.0% |
| AAGCAGAAGCTGTGTTTGTG+TGG | + | chr6.4:13097894-13097913 | MS.gene89000:intron | 45.0% | |
| ACATTTGATATGTTGGGGCG+CGG | - | chr6.4:13098510-13098529 | None:intergenic | 45.0% | |
| ATAGTCGGCCATTTCTTCTC+CGG | - | chr6.4:13100391-13100410 | None:intergenic | 45.0% | |
| CAAACCGAACCAATCCGTTT+CGG | + | chr6.4:13096743-13096762 | MS.gene89000:CDS | 45.0% | |
| CATTTCACATGCAACGTCGT+CGG | - | chr6.4:13096977-13096996 | None:intergenic | 45.0% | |
| CCACATTTCAGAAATGGGTC+CGG | - | chr6.4:13097525-13097544 | None:intergenic | 45.0% | |
| CGTGAAGGCTTCGATTGATA+AGG | + | chr6.4:13100441-13100460 | MS.gene89000:CDS | 45.0% | |
| CTCTTTCTAACAAATCCGCG+TGG | + | chr6.4:13097483-13097502 | MS.gene89000:intron | 45.0% | |
| CTTCGTGTCAGTGTCTACAT+TGG | - | chr6.4:13097414-13097433 | None:intergenic | 45.0% | |
| GACGACGTTGCATGTGAAAT+GGG | + | chr6.4:13096976-13096995 | MS.gene89000:CDS | 45.0% | |
| GAGCCAGTGCTTAATAAAGC+TGG | + | chr6.4:13100043-13100062 | MS.gene89000:CDS | 45.0% | |
| GCTGGAGTGATTCTATCTTG+TGG | + | chr6.4:13100061-13100080 | MS.gene89000:CDS | 45.0% | |
| GCTGTAAGCGTAAACTAGTG+AGG | - | chr6.4:13098352-13098371 | None:intergenic | 45.0% | |
| GGGTCCCACATTTCAGAAAT+GGG | - | chr6.4:13097530-13097549 | None:intergenic | 45.0% | |
| GTGGATGCATCATCCTAGAA+CGG | + | chr6.4:13097126-13097145 | MS.gene89000:CDS | 45.0% | |
| TAGGAAAGACTGACACTCCT+CGG | + | chr6.4:13097244-13097263 | MS.gene89000:intron | 45.0% | |
| TGGGTCCCACATTTCAGAAA+TGG | - | chr6.4:13097531-13097550 | None:intergenic | 45.0% | |
| TGGTGAAAACAAGCACCAGT+AGG | - | chr6.4:13098883-13098902 | None:intergenic | 45.0% | |
| TTACCATAAGAGCCTCCTGA+GGG | - | chr6.4:13100321-13100340 | None:intergenic | 45.0% | |
| ! | AAGCCCCGCTGATTAACAAA+AGG | - | chr6.4:13098813-13098832 | None:intergenic | 45.0% |
| ! | ATAGGAGCCGTAGATTTTGG+CGG | - | chr6.4:13096906-13096925 | None:intergenic | 45.0% |
| ! | GATTAGACGTGTCTTGGTGT+CGG | + | chr6.4:13097266-13097285 | MS.gene89000:intron | 45.0% |
| ! | GTTGTTTGAGTTTGCGAAGG+TGG | - | chr6.4:13096873-13096892 | None:intergenic | 45.0% |
| ! | TGAAGGTGTGTGAGGAATGT+GGG | + | chr6.4:13097080-13097099 | MS.gene89000:CDS | 45.0% |
| ! | TGAGATTGTGAAGGTGTGTG+AGG | + | chr6.4:13097072-13097091 | MS.gene89000:CDS | 45.0% |
| ! | TGTTTTGCTTGAGAAGCCTG+TGG | + | chr6.4:13097027-13097046 | MS.gene89000:CDS | 45.0% |
| !! | AATGCCGAAACGGATTGGTT+CGG | - | chr6.4:13096750-13096769 | None:intergenic | 45.0% |
| !! | ACTGATTTTGGATGCCGTGA+AGG | + | chr6.4:13100426-13100445 | MS.gene89000:CDS | 45.0% |
| !! | ATTGATTTGGGGGGTTGGTT+AGG | + | chr6.4:13098635-13098654 | MS.gene89000:intron | 45.0% |
| !! | CAATGGGCTATTGATTTGGG+GGG | + | chr6.4:13098626-13098645 | MS.gene89000:intron | 45.0% |
| !! | CCAATGGGCTATTGATTTGG+GGG | + | chr6.4:13098625-13098644 | MS.gene89000:intron | 45.0% |
| !! | CGGACCCATTTCTGAAATGT+GGG | + | chr6.4:13097523-13097542 | MS.gene89000:intron | 45.0% |
| !! | GTGGAGAAAAGAAGCATTGC+GGG | + | chr6.4:13098470-13098489 | MS.gene89000:intron | 45.0% |
| !! | GTGTTGGCCTTTGCATCTTT+GGG | + | chr6.4:13098906-13098925 | MS.gene89000:intron | 45.0% |
| !! | TGTGTTGGCCTTTGCATCTT+TGG | + | chr6.4:13098905-13098924 | MS.gene89000:intron | 45.0% |
| ACATGCAACGTCGTCGGTAA+CGG | - | chr6.4:13096971-13096990 | None:intergenic | 50.0% | |
| ACCAAGACACGTCTAATCCG+AGG | - | chr6.4:13097264-13097283 | None:intergenic | 50.0% | |
| ACGCGAAACCGGAGAAGAAA+TGG | + | chr6.4:13100380-13100399 | MS.gene89000:CDS | 50.0% | |
| AGAAAACGATCTCCCTCAGG+AGG | + | chr6.4:13100306-13100325 | MS.gene89000:CDS | 50.0% | |
| AGCTGTGTTTGTGTGGAGGA+TGG | + | chr6.4:13097901-13097920 | MS.gene89000:intron | 50.0% | |
| ATCAGCGGGGCTTTACTTTC+TGG | + | chr6.4:13098820-13098839 | MS.gene89000:intron | 50.0% | |
| CACAACCGAGAATGCCGAAA+CGG | - | chr6.4:13096760-13096779 | None:intergenic | 50.0% | |
| CAGAAGCTGTGTTTGTGTGG+AGG | + | chr6.4:13097897-13097916 | MS.gene89000:intron | 50.0% | |
| CCAATCCGTTTCGGCATTCT+CGG | + | chr6.4:13096752-13096771 | MS.gene89000:CDS | 50.0% | |
| CCCCCAAATCAATAGCCCAT+TGG | - | chr6.4:13098628-13098647 | None:intergenic | 50.0% | |
| CCTAGAACGGAGGTGATGAA+GGG | + | chr6.4:13097139-13097158 | MS.gene89000:CDS | 50.0% | |
| CGACGACGTTGCATGTGAAA+TGG | + | chr6.4:13096975-13096994 | MS.gene89000:CDS | 50.0% | |
| CTAGAACGGAGGTGATGAAG+GGG | + | chr6.4:13097140-13097159 | MS.gene89000:CDS | 50.0% | |
| CTGTGTTTGTGTGGAGGATG+GGG | + | chr6.4:13097903-13097922 | MS.gene89000:intron | 50.0% | |
| GACGTTGCATGTGAAATGGG+CGG | + | chr6.4:13096979-13096998 | MS.gene89000:CDS | 50.0% | |
| GATGCAAAGGCCAACACACT+TGG | - | chr6.4:13098903-13098922 | None:intergenic | 50.0% | |
| GATGCATCATCCTAGAACGG+AGG | + | chr6.4:13097129-13097148 | MS.gene89000:CDS | 50.0% | |
| GCTGTGTTTGTGTGGAGGAT+GGG | + | chr6.4:13097902-13097921 | MS.gene89000:intron | 50.0% | |
| GGAATGTGGGGTGCAGTTTA+TGG | + | chr6.4:13097093-13097112 | MS.gene89000:CDS | 50.0% | |
| GTGGGGTGCAGTTTATGGAT+GGG | + | chr6.4:13097098-13097117 | MS.gene89000:CDS | 50.0% | |
| GTTACCATAAGAGCCTCCTG+AGG | - | chr6.4:13100322-13100341 | None:intergenic | 50.0% | |
| GTTTGCGAAGGTGGTTGCTT+TGG | - | chr6.4:13096864-13096883 | None:intergenic | 50.0% | |
| TCCTAGAACGGAGGTGATGA+AGG | + | chr6.4:13097138-13097157 | MS.gene89000:CDS | 50.0% | |
| TGGAGGATGAGGAGAGGTTT+GGG | + | chr6.4:13097167-13097186 | MS.gene89000:CDS | 50.0% | |
| TGTGGGGTGCAGTTTATGGA+TGG | + | chr6.4:13097097-13097116 | MS.gene89000:CDS | 50.0% | |
| TTGGAGGATGAGGAGAGGTT+TGG | + | chr6.4:13097166-13097185 | MS.gene89000:CDS | 50.0% | |
| TTTCGGCATTCTCGGTTGTG+CGG | + | chr6.4:13096760-13096779 | MS.gene89000:CDS | 50.0% | |
| TTTGCTTGAGAAGCCTGTGG+CGG | + | chr6.4:13097030-13097049 | MS.gene89000:CDS | 50.0% | |
| ! | GAAGGTGTGTGAGGAATGTG+GGG | + | chr6.4:13097081-13097100 | MS.gene89000:CDS | 50.0% |
| ! | GGAGGTGATGAAGGGGTTTT+TGG | + | chr6.4:13097147-13097166 | MS.gene89000:CDS | 50.0% |
| ! | GTGAAGGTGTGTGAGGAATG+TGG | + | chr6.4:13097079-13097098 | MS.gene89000:CDS | 50.0% |
| ! | TCCTCGGATTAGACGTGTCT+TGG | + | chr6.4:13097260-13097279 | MS.gene89000:intron | 50.0% |
| !! | AAAGAAGCATTGCGGGTTGC+AGG | + | chr6.4:13098477-13098496 | MS.gene89000:intron | 50.0% |
| !! | CCGGACCCATTTCTGAAATG+TGG | + | chr6.4:13097522-13097541 | MS.gene89000:intron | 50.0% |
| !! | GAAGGGGTTTTTGGAGGATG+AGG | + | chr6.4:13097156-13097175 | MS.gene89000:CDS | 50.0% |
| !! | GAAGGTGGTTGCTTTGGAGA+GGG | - | chr6.4:13096858-13096877 | None:intergenic | 50.0% |
| !! | GGTGATGAAGGGGTTTTTGG+AGG | + | chr6.4:13097150-13097169 | MS.gene89000:CDS | 50.0% |
| !! | GGTTTTTGGAGGATGAGGAG+AGG | + | chr6.4:13097161-13097180 | MS.gene89000:CDS | 50.0% |
| AAGCCAGATCTCGACGCTCT+TGG | + | chr6.4:13099932-13099951 | MS.gene89000:CDS | 55.0% | |
| AATGGCGCGTGAGAGTTTGC+GGG | - | chr6.4:13096792-13096811 | None:intergenic | 55.0% | |
| CCCTTCATCACCTCCGTTCT+AGG | - | chr6.4:13097142-13097161 | None:intergenic | 55.0% | |
| CCGAGAATGCCGAAACGGAT+TGG | - | chr6.4:13096755-13096774 | None:intergenic | 55.0% | |
| CCTCCCACCGCCAAAATCTA+CGG | + | chr6.4:13096896-13096915 | MS.gene89000:CDS | 55.0% | |
| GAATGGCGCGTGAGAGTTTG+CGG | - | chr6.4:13096793-13096812 | None:intergenic | 55.0% | |
| GGATGAGGAGAGGTTTGGGA+AGG | + | chr6.4:13097171-13097190 | MS.gene89000:CDS | 55.0% | |
| GTTGCATGTGAAATGGGCGG+TGG | + | chr6.4:13096982-13097001 | MS.gene89000:CDS | 55.0% | |
| TCCTTCACACTAACCGCCAC+AGG | - | chr6.4:13097046-13097065 | None:intergenic | 55.0% | |
| TCTCCCTCAGGAGGCTCTTA+TGG | + | chr6.4:13100315-13100334 | MS.gene89000:CDS | 55.0% | |
| TGGAGGATGGGGAGAGGTTT+GGG | + | chr6.4:13097914-13097933 | MS.gene89000:intron | 55.0% | |
| TGTGTGTGAACTTCGCCGCT+AGG | - | chr6.4:13098412-13098431 | None:intergenic | 55.0% | |
| TTGAAACCCTGCTGCATGCC+TGG | + | chr6.4:13099507-13099526 | MS.gene89000:intron | 55.0% | |
| TTTGTGTGGAGGATGGGGAG+AGG | + | chr6.4:13097908-13097927 | MS.gene89000:intron | 55.0% | |
| ! | GCTGTCGTTGCTTTGCCTAC+TGG | + | chr6.4:13098865-13098884 | MS.gene89000:intron | 55.0% |
| ! | TATCTGTGTGGGTGTCGTGC+TGG | - | chr6.4:13097311-13097330 | None:intergenic | 55.0% |
| !! | CGAAGGTGGTTGCTTTGGAG+AGG | - | chr6.4:13096859-13096878 | None:intergenic | 55.0% |
| !! | CGTAGATTTTGGCGGTGGGA+GGG | - | chr6.4:13096898-13096917 | None:intergenic | 55.0% |
| !! | GAGCCGTAGATTTTGGCGGT+GGG | - | chr6.4:13096902-13096921 | None:intergenic | 55.0% |
| !! | GGGCTATTGATTTGGGGGGT+TGG | + | chr6.4:13098630-13098649 | MS.gene89000:intron | 55.0% |
| !! | TGGTTGCTTTGGAGAGGGTG+CGG | - | chr6.4:13096853-13096872 | None:intergenic | 55.0% |
| AGAAACGCCAGGCATGCAGC+AGG | - | chr6.4:13099517-13099536 | None:intergenic | 60.0% | |
| GAAACGCCAGGCATGCAGCA+GGG | - | chr6.4:13099516-13099535 | None:intergenic | 60.0% | |
| GCCTGTGGCGGTTAGTGTGA+AGG | + | chr6.4:13097042-13097061 | MS.gene89000:CDS | 60.0% | |
| GCTCTCTTGGCGACGAAGGA+TGG | + | chr6.4:13099954-13099973 | MS.gene89000:CDS | 60.0% | |
| GGCGGTGGATGAGAGGAGAA+TGG | - | chr6.4:13096810-13096829 | None:intergenic | 60.0% | |
| GTGGAGGATGGGGAGAGGTT+TGG | + | chr6.4:13097913-13097932 | MS.gene89000:intron | 60.0% | |
| TGTGAAATGGGCGGTGGCTG+CGG | + | chr6.4:13096988-13097007 | MS.gene89000:CDS | 60.0% | |
| ! | CTCGACGCTCTTGGCTCTCT+TGG | + | chr6.4:13099941-13099960 | MS.gene89000:CDS | 60.0% |
| ! | CTTGGCTCTCTTGGCGACGA+AGG | + | chr6.4:13099950-13099969 | MS.gene89000:CDS | 60.0% |
| ! | TGTGGGTGTCGTGCTGGTGT+CGG | - | chr6.4:13097305-13097324 | None:intergenic | 60.0% |
| !! | AGATGGTGGCGGTGGATGAG+AGG | - | chr6.4:13096817-13096836 | None:intergenic | 60.0% |
| !! | CCGTAGATTTTGGCGGTGGG+AGG | - | chr6.4:13096899-13096918 | None:intergenic | 60.0% |
| !! | GAGCCAAGAGCGTCGAGATC+TGG | - | chr6.4:13099938-13099957 | None:intergenic | 60.0% |
| !! | GGAGCCGTAGATTTTGGCGG+TGG | - | chr6.4:13096903-13096922 | None:intergenic | 60.0% |
| GGATGGGGAGAGGTTTGGGC+AGG | + | chr6.4:13097918-13097937 | MS.gene89000:intron | 65.0% | |
| ACCGCCACCATCTCCGCCGT+CGG | + | chr6.4:13096824-13096843 | MS.gene89000:CDS | 70.0% | |
| CGGTGGCTGCGGCGAAGAAG+GGG | + | chr6.4:13096999-13097018 | MS.gene89000:CDS | 70.0% | |
| GCGGTGGCTGCGGCGAAGAA+GGG | + | chr6.4:13096998-13097017 | MS.gene89000:CDS | 70.0% | |
| GCTTCCGACGGCGGAGATGG+TGG | - | chr6.4:13096831-13096850 | None:intergenic | 70.0% | |
| ! | GGAGAGGGTGCGGCTTCCGA+CGG | - | chr6.4:13096843-13096862 | None:intergenic | 70.0% |
| ! | TCCGACGGCGGAGATGGTGG+CGG | - | chr6.4:13096828-13096847 | None:intergenic | 70.0% |
| GCGGCTTCCGACGGCGGAGA+TGG | - | chr6.4:13096834-13096853 | None:intergenic | 75.0% | |
| GGCGGTGGCTGCGGCGAAGA+AGG | + | chr6.4:13096997-13097016 | MS.gene89000:CDS | 75.0% | |
| ! | GAGGGTGCGGCTTCCGACGG+CGG | - | chr6.4:13096840-13096859 | None:intergenic | 75.0% |
| !! | GACGGCGGAGATGGTGGCGG+TGG | - | chr6.4:13096825-13096844 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 13096737 | 13100492 | 13096737 | ID=MS.gene89000 |
| chr6.4 | mRNA | 13096737 | 13100492 | 13096737 | ID=MS.gene89000.t1;Parent=MS.gene89000 |
| chr6.4 | exon | 13096737 | 13097201 | 13096737 | ID=MS.gene89000.t1.exon1;Parent=MS.gene89000.t1 |
| chr6.4 | CDS | 13096737 | 13097201 | 13096737 | ID=cds.MS.gene89000.t1;Parent=MS.gene89000.t1 |
| chr6.4 | exon | 13099872 | 13100492 | 13099872 | ID=MS.gene89000.t1.exon2;Parent=MS.gene89000.t1 |
| chr6.4 | CDS | 13099872 | 13100492 | 13099872 | ID=cds.MS.gene89000.t1;Parent=MS.gene89000.t1 |
| Gene Sequence |
| Protein sequence |
