Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23923.t1 | XP_003603663.1 | 94.2 | 104 | 6 | 0 | 1 | 104 | 1 | 104 | 3.40E-40 | 174.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23923.t1 | P11892 | 85.4 | 89 | 12 | 1 | 1 | 88 | 1 | 89 | 9.7e-36 | 150.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23923.t1 | B7FHD4 | 94.2 | 104 | 6 | 0 | 1 | 104 | 1 | 104 | 2.5e-40 | 174.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene23923 | 0.840164 | 1.03E-57 | -1.69E-46 |
MS.gene049284 | MS.gene23923 | 0.845602 | 3.67E-59 | -1.69E-46 |
MS.gene049346 | MS.gene23923 | 0.832787 | 7.75E-56 | -1.69E-46 |
MS.gene049351 | MS.gene23923 | 0.846842 | 1.68E-59 | -1.69E-46 |
MS.gene049389 | MS.gene23923 | 0.856099 | 4.05E-62 | -1.69E-46 |
MS.gene049427 | MS.gene23923 | 0.824986 | 5.99E-54 | -1.69E-46 |
MS.gene049491 | MS.gene23923 | 0.876354 | 1.49E-68 | -1.69E-46 |
MS.gene049599 | MS.gene23923 | -0.823605 | 1.27E-53 | -1.69E-46 |
MS.gene049614 | MS.gene23923 | 0.82398 | 1.03E-53 | -1.69E-46 |
MS.gene049661 | MS.gene23923 | 0.854676 | 1.05E-61 | -1.69E-46 |
MS.gene049662 | MS.gene23923 | 0.858812 | 6.37E-63 | -1.69E-46 |
MS.gene049758 | MS.gene23923 | 0.919916 | 2.47E-87 | -1.69E-46 |
MS.gene049760 | MS.gene23923 | 0.818426 | 1.97E-52 | -1.69E-46 |
MS.gene049910 | MS.gene23923 | 0.837368 | 5.42E-57 | -1.69E-46 |
MS.gene049915 | MS.gene23923 | 0.816803 | 4.58E-52 | -1.69E-46 |
MS.gene050076 | MS.gene23923 | 0.879619 | 1.07E-69 | -1.69E-46 |
MS.gene050099 | MS.gene23923 | 0.875654 | 2.60E-68 | -1.69E-46 |
MS.gene050128 | MS.gene23923 | 0.880395 | 5.69E-70 | -1.69E-46 |
MS.gene050301 | MS.gene23923 | 0.919588 | 3.73E-87 | -1.69E-46 |
MS.gene050397 | MS.gene23923 | 0.875627 | 2.65E-68 | -1.69E-46 |
MS.gene050404 | MS.gene23923 | 0.874983 | 4.41E-68 | -1.69E-46 |
MS.gene050406 | MS.gene23923 | 0.876705 | 1.13E-68 | -1.69E-46 |
MS.gene050432 | MS.gene23923 | 0.861751 | 8.23E-64 | -1.69E-46 |
MS.gene050464 | MS.gene23923 | 0.879638 | 1.06E-69 | -1.69E-46 |
MS.gene050529 | MS.gene23923 | 0.901423 | 2.72E-78 | -1.69E-46 |
MS.gene05053 | MS.gene23923 | 0.808803 | 2.59E-50 | -1.69E-46 |
MS.gene050558 | MS.gene23923 | 0.815745 | 7.90E-52 | -1.69E-46 |
MS.gene050642 | MS.gene23923 | 0.814941 | 1.19E-51 | -1.69E-46 |
MS.gene050670 | MS.gene23923 | 0.837858 | 4.06E-57 | -1.69E-46 |
MS.gene050767 | MS.gene23923 | 0.858142 | 1.01E-62 | -1.69E-46 |
MS.gene050770 | MS.gene23923 | 0.860806 | 1.60E-63 | -1.69E-46 |
MS.gene050812 | MS.gene23923 | 0.81699 | 4.16E-52 | -1.69E-46 |
MS.gene05101 | MS.gene23923 | 0.909402 | 5.93E-82 | -1.69E-46 |
MS.gene05105 | MS.gene23923 | 0.814964 | 1.18E-51 | -1.69E-46 |
MS.gene05119 | MS.gene23923 | -0.813975 | 1.95E-51 | -1.69E-46 |
MS.gene051471 | MS.gene23923 | 0.920479 | 1.22E-87 | -1.69E-46 |
MS.gene051582 | MS.gene23923 | 0.846554 | 2.02E-59 | -1.69E-46 |
MS.gene051662 | MS.gene23923 | 0.864267 | 1.38E-64 | -1.69E-46 |
MS.gene051663 | MS.gene23923 | 0.854812 | 9.59E-62 | -1.69E-46 |
MS.gene051860 | MS.gene23923 | 0.836949 | 6.93E-57 | -1.69E-46 |
MS.gene051877 | MS.gene23923 | 0.805641 | 1.21E-49 | -1.69E-46 |
MS.gene051983 | MS.gene23923 | 0.801969 | 7.01E-49 | -1.69E-46 |
MS.gene052077 | MS.gene23923 | 0.826153 | 3.17E-54 | -1.69E-46 |
MS.gene052078 | MS.gene23923 | 0.924374 | 7.68E-90 | -1.69E-46 |
MS.gene052178 | MS.gene23923 | 0.917837 | 3.26E-86 | -1.69E-46 |
MS.gene052188 | MS.gene23923 | 0.880931 | 3.65E-70 | -1.69E-46 |
MS.gene052207 | MS.gene23923 | 0.814915 | 1.21E-51 | -1.69E-46 |
MS.gene052253 | MS.gene23923 | 0.835548 | 1.57E-56 | -1.69E-46 |
MS.gene052287 | MS.gene23923 | 0.812297 | 4.55E-51 | -1.69E-46 |
MS.gene052290 | MS.gene23923 | 0.856913 | 2.33E-62 | -1.69E-46 |
MS.gene052293 | MS.gene23923 | 0.809413 | 1.92E-50 | -1.69E-46 |
MS.gene052310 | MS.gene23923 | 0.906666 | 1.16E-80 | -1.69E-46 |
MS.gene052322 | MS.gene23923 | 0.826212 | 3.07E-54 | -1.69E-46 |
MS.gene052326 | MS.gene23923 | 0.882514 | 9.77E-71 | -1.69E-46 |
MS.gene052340 | MS.gene23923 | 0.900903 | 4.59E-78 | -1.69E-46 |
MS.gene052344 | MS.gene23923 | -0.825111 | 5.60E-54 | -1.69E-46 |
MS.gene052484 | MS.gene23923 | 0.802833 | 4.65E-49 | -1.69E-46 |
MS.gene052485 | MS.gene23923 | 0.830269 | 3.23E-55 | -1.69E-46 |
MS.gene053009 | MS.gene23923 | 0.80511 | 1.56E-49 | -1.69E-46 |
MS.gene053073 | MS.gene23923 | 0.831972 | 1.23E-55 | -1.69E-46 |
MS.gene053103 | MS.gene23923 | 0.834462 | 2.96E-56 | -1.69E-46 |
MS.gene053104 | MS.gene23923 | 0.804583 | 2.01E-49 | -1.69E-46 |
MS.gene05316 | MS.gene23923 | 0.821319 | 4.30E-53 | -1.69E-46 |
MS.gene053181 | MS.gene23923 | 0.83208 | 1.16E-55 | -1.69E-46 |
MS.gene053209 | MS.gene23923 | 0.883268 | 5.18E-71 | -1.69E-46 |
MS.gene053322 | MS.gene23923 | 0.847712 | 9.72E-60 | -1.69E-46 |
MS.gene053557 | MS.gene23923 | 0.901914 | 1.65E-78 | -1.69E-46 |
MS.gene053559 | MS.gene23923 | 0.813478 | 2.51E-51 | -1.69E-46 |
MS.gene053836 | MS.gene23923 | 0.909416 | 5.83E-82 | -1.69E-46 |
MS.gene053907 | MS.gene23923 | 0.860292 | 2.29E-63 | -1.69E-46 |
MS.gene053928 | MS.gene23923 | 0.842422 | 2.61E-58 | -1.69E-46 |
MS.gene053971 | MS.gene23923 | 0.831317 | 1.79E-55 | -1.69E-46 |
MS.gene054011 | MS.gene23923 | 0.815717 | 8.01E-52 | -1.69E-46 |
MS.gene054123 | MS.gene23923 | 0.870593 | 1.30E-66 | -1.69E-46 |
MS.gene054214 | MS.gene23923 | 0.81966 | 1.03E-52 | -1.69E-46 |
MS.gene054327 | MS.gene23923 | 0.809742 | 1.63E-50 | -1.69E-46 |
MS.gene054349 | MS.gene23923 | 0.807375 | 5.21E-50 | -1.69E-46 |
MS.gene054376 | MS.gene23923 | 0.876054 | 1.89E-68 | -1.69E-46 |
MS.gene054473 | MS.gene23923 | 0.818338 | 2.06E-52 | -1.69E-46 |
MS.gene05455 | MS.gene23923 | 0.856532 | 3.02E-62 | -1.69E-46 |
MS.gene054618 | MS.gene23923 | 0.809388 | 1.94E-50 | -1.69E-46 |
MS.gene054802 | MS.gene23923 | 0.845193 | 4.73E-59 | -1.69E-46 |
MS.gene054803 | MS.gene23923 | 0.844085 | 9.40E-59 | -1.69E-46 |
MS.gene054804 | MS.gene23923 | 0.848181 | 7.22E-60 | -1.69E-46 |
MS.gene054930 | MS.gene23923 | 0.8157 | 8.08E-52 | -1.69E-46 |
MS.gene054955 | MS.gene23923 | 0.815497 | 8.97E-52 | -1.69E-46 |
MS.gene054983 | MS.gene23923 | 0.818299 | 2.11E-52 | -1.69E-46 |
MS.gene055116 | MS.gene23923 | 0.876088 | 1.84E-68 | -1.69E-46 |
MS.gene055133 | MS.gene23923 | 0.813782 | 2.15E-51 | -1.69E-46 |
MS.gene055254 | MS.gene23923 | 0.857424 | 1.65E-62 | -1.69E-46 |
MS.gene055277 | MS.gene23923 | 0.922686 | 7.12E-89 | -1.69E-46 |
MS.gene055303 | MS.gene23923 | 0.802557 | 5.30E-49 | -1.69E-46 |
MS.gene055390 | MS.gene23923 | 0.882072 | 1.42E-70 | -1.69E-46 |
MS.gene055397 | MS.gene23923 | 0.830635 | 2.63E-55 | -1.69E-46 |
MS.gene055412 | MS.gene23923 | 0.819173 | 1.33E-52 | -1.69E-46 |
MS.gene055422 | MS.gene23923 | 0.933597 | 1.47E-95 | -1.69E-46 |
MS.gene055428 | MS.gene23923 | 0.900069 | 1.06E-77 | -1.69E-46 |
MS.gene055499 | MS.gene23923 | 0.811474 | 6.88E-51 | -1.69E-46 |
MS.gene055533 | MS.gene23923 | 0.81309 | 3.05E-51 | -1.69E-46 |
MS.gene05553 | MS.gene23923 | 0.828816 | 7.29E-55 | -1.69E-46 |
MS.gene055604 | MS.gene23923 | 0.843028 | 1.80E-58 | -1.69E-46 |
MS.gene055712 | MS.gene23923 | 0.864289 | 1.35E-64 | -1.69E-46 |
MS.gene055896 | MS.gene23923 | 0.853277 | 2.66E-61 | -1.69E-46 |
MS.gene05592 | MS.gene23923 | 0.80638 | 8.46E-50 | -1.69E-46 |
MS.gene056191 | MS.gene23923 | 0.861546 | 9.51E-64 | -1.69E-46 |
MS.gene056314 | MS.gene23923 | 0.828712 | 7.72E-55 | -1.69E-46 |
MS.gene056407 | MS.gene23923 | 0.863595 | 2.22E-64 | -1.69E-46 |
MS.gene056410 | MS.gene23923 | 0.850586 | 1.54E-60 | -1.69E-46 |
MS.gene056451 | MS.gene23923 | 0.821326 | 4.29E-53 | -1.69E-46 |
MS.gene056609 | MS.gene23923 | 0.877148 | 7.92E-69 | -1.69E-46 |
MS.gene056612 | MS.gene23923 | 0.908072 | 2.55E-81 | -1.69E-46 |
MS.gene056659 | MS.gene23923 | 0.818869 | 1.56E-52 | -1.69E-46 |
MS.gene056719 | MS.gene23923 | 0.805244 | 1.47E-49 | -1.69E-46 |
MS.gene056772 | MS.gene23923 | 0.806886 | 6.61E-50 | -1.69E-46 |
MS.gene056796 | MS.gene23923 | 0.836254 | 1.04E-56 | -1.69E-46 |
MS.gene056897 | MS.gene23923 | 0.812347 | 4.44E-51 | -1.69E-46 |
MS.gene056899 | MS.gene23923 | -0.813122 | 3.00E-51 | -1.69E-46 |
MS.gene056979 | MS.gene23923 | 0.804148 | 2.48E-49 | -1.69E-46 |
MS.gene057011 | MS.gene23923 | 0.821226 | 4.52E-53 | -1.69E-46 |
MS.gene05702 | MS.gene23923 | 0.889629 | 2.04E-73 | -1.69E-46 |
MS.gene057121 | MS.gene23923 | 0.856634 | 2.82E-62 | -1.69E-46 |
MS.gene057123 | MS.gene23923 | 0.837786 | 4.23E-57 | -1.69E-46 |
MS.gene057124 | MS.gene23923 | 0.810451 | 1.15E-50 | -1.69E-46 |
MS.gene057129 | MS.gene23923 | 0.829837 | 4.12E-55 | -1.69E-46 |
MS.gene057245 | MS.gene23923 | 0.846124 | 2.64E-59 | -1.69E-46 |
MS.gene057260 | MS.gene23923 | 0.809484 | 1.85E-50 | -1.69E-46 |
MS.gene057295 | MS.gene23923 | 0.877439 | 6.28E-69 | -1.69E-46 |
MS.gene05733 | MS.gene23923 | 0.845874 | 3.09E-59 | -1.69E-46 |
MS.gene057439 | MS.gene23923 | 0.898807 | 3.69E-77 | -1.69E-46 |
MS.gene057448 | MS.gene23923 | 0.85904 | 5.44E-63 | -1.69E-46 |
MS.gene057449 | MS.gene23923 | 0.853671 | 2.05E-61 | -1.69E-46 |
MS.gene057450 | MS.gene23923 | 0.870956 | 9.86E-67 | -1.69E-46 |
MS.gene057754 | MS.gene23923 | 0.816964 | 4.22E-52 | -1.69E-46 |
MS.gene057779 | MS.gene23923 | 0.803929 | 2.76E-49 | -1.69E-46 |
MS.gene057782 | MS.gene23923 | 0.803717 | 3.05E-49 | -1.69E-46 |
MS.gene057794 | MS.gene23923 | 0.82289 | 1.86E-53 | -1.69E-46 |
MS.gene057796 | MS.gene23923 | 0.828761 | 7.51E-55 | -1.69E-46 |
MS.gene058002 | MS.gene23923 | 0.897578 | 1.23E-76 | -1.69E-46 |
MS.gene058082 | MS.gene23923 | 0.874933 | 4.58E-68 | -1.69E-46 |
MS.gene05811 | MS.gene23923 | 0.890432 | 9.91E-74 | -1.69E-46 |
MS.gene058142 | MS.gene23923 | 0.84305 | 1.78E-58 | -1.69E-46 |
MS.gene058201 | MS.gene23923 | 0.808175 | 3.52E-50 | -1.69E-46 |
MS.gene058233 | MS.gene23923 | 0.871615 | 5.97E-67 | -1.69E-46 |
MS.gene058276 | MS.gene23923 | 0.868839 | 4.85E-66 | -1.69E-46 |
MS.gene058293 | MS.gene23923 | 0.899443 | 1.97E-77 | -1.69E-46 |
MS.gene058365 | MS.gene23923 | 0.847022 | 1.50E-59 | -1.69E-46 |
MS.gene058537 | MS.gene23923 | -0.802068 | 6.68E-49 | -1.69E-46 |
MS.gene058660 | MS.gene23923 | 0.907741 | 3.65E-81 | -1.69E-46 |
MS.gene058749 | MS.gene23923 | 0.821152 | 4.70E-53 | -1.69E-46 |
MS.gene058787 | MS.gene23923 | 0.853151 | 2.89E-61 | -1.69E-46 |
MS.gene058845 | MS.gene23923 | 0.88239 | 1.08E-70 | -1.69E-46 |
MS.gene05886 | MS.gene23923 | 0.810854 | 9.37E-51 | -1.69E-46 |
MS.gene058928 | MS.gene23923 | 0.853679 | 2.04E-61 | -1.69E-46 |
MS.gene058993 | MS.gene23923 | 0.805393 | 1.36E-49 | -1.69E-46 |
MS.gene05907 | MS.gene23923 | 0.886257 | 4.00E-72 | -1.69E-46 |
MS.gene059228 | MS.gene23923 | 0.848321 | 6.60E-60 | -1.69E-46 |
MS.gene059285 | MS.gene23923 | 0.821173 | 4.65E-53 | -1.69E-46 |
MS.gene059294 | MS.gene23923 | 0.833811 | 4.30E-56 | -1.69E-46 |
MS.gene059326 | MS.gene23923 | 0.892113 | 2.14E-74 | -1.69E-46 |
MS.gene059342 | MS.gene23923 | 0.838983 | 2.08E-57 | -1.69E-46 |
MS.gene059366 | MS.gene23923 | 0.804707 | 1.90E-49 | -1.69E-46 |
MS.gene059518 | MS.gene23923 | 0.89833 | 5.90E-77 | -1.69E-46 |
MS.gene059536 | MS.gene23923 | 0.831719 | 1.42E-55 | -1.69E-46 |
MS.gene059597 | MS.gene23923 | 0.897034 | 2.08E-76 | -1.69E-46 |
MS.gene05959 | MS.gene23923 | 0.848452 | 6.08E-60 | -1.69E-46 |
MS.gene059676 | MS.gene23923 | 0.894967 | 1.50E-75 | -1.69E-46 |
MS.gene059688 | MS.gene23923 | 0.88719 | 1.77E-72 | -1.69E-46 |
MS.gene059692 | MS.gene23923 | 0.914091 | 2.88E-84 | -1.69E-46 |
MS.gene059695 | MS.gene23923 | 0.910639 | 1.49E-82 | -1.69E-46 |
MS.gene059708 | MS.gene23923 | 0.851464 | 8.72E-61 | -1.69E-46 |
MS.gene05984 | MS.gene23923 | 0.899893 | 1.26E-77 | -1.69E-46 |
MS.gene059894 | MS.gene23923 | 0.932092 | 1.43E-94 | -1.69E-46 |
MS.gene059899 | MS.gene23923 | 0.860703 | 1.72E-63 | -1.69E-46 |
MS.gene059960 | MS.gene23923 | 0.854524 | 1.16E-61 | -1.69E-46 |
MS.gene059974 | MS.gene23923 | 0.844542 | 7.09E-59 | -1.69E-46 |
MS.gene060005 | MS.gene23923 | 0.848664 | 5.31E-60 | -1.69E-46 |
MS.gene06037 | MS.gene23923 | 0.881558 | 2.17E-70 | -1.69E-46 |
MS.gene060403 | MS.gene23923 | 0.807321 | 5.35E-50 | -1.69E-46 |
MS.gene060407 | MS.gene23923 | 0.854866 | 9.25E-62 | -1.69E-46 |
MS.gene060476 | MS.gene23923 | 0.858806 | 6.39E-63 | -1.69E-46 |
MS.gene060495 | MS.gene23923 | 0.818391 | 2.01E-52 | -1.69E-46 |
MS.gene060559 | MS.gene23923 | 0.803969 | 2.70E-49 | -1.69E-46 |
MS.gene060804 | MS.gene23923 | 0.815501 | 8.95E-52 | -1.69E-46 |
MS.gene060818 | MS.gene23923 | 0.813702 | 2.24E-51 | -1.69E-46 |
MS.gene06090 | MS.gene23923 | 0.828251 | 9.98E-55 | -1.69E-46 |
MS.gene061041 | MS.gene23923 | 0.804312 | 2.30E-49 | -1.69E-46 |
MS.gene061049 | MS.gene23923 | 0.932693 | 5.80E-95 | -1.69E-46 |
MS.gene061051 | MS.gene23923 | -0.8852 | 9.98E-72 | -1.69E-46 |
MS.gene061112 | MS.gene23923 | 0.853037 | 3.11E-61 | -1.69E-46 |
MS.gene061154 | MS.gene23923 | 0.815545 | 8.75E-52 | -1.69E-46 |
MS.gene061159 | MS.gene23923 | 0.824883 | 6.34E-54 | -1.69E-46 |
MS.gene061200 | MS.gene23923 | 0.825052 | 5.78E-54 | -1.69E-46 |
MS.gene061265 | MS.gene23923 | 0.847491 | 1.12E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23923.t1 | MTR_3g110640 | 97.115 | 104 | 3 | 0 | 1 | 104 | 1 | 104 | 1.85e-69 | 202 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23923.t1 | AT5G17870 | 49.474 | 95 | 45 | 2 | 3 | 94 | 2 | 96 | 7.89e-23 | 85.1 |
MS.gene23923.t1 | AT5G17870 | 49.474 | 95 | 45 | 2 | 3 | 94 | 25 | 119 | 1.89e-22 | 85.1 |
Find 27 sgRNAs with CRISPR-Local
Find 28 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTTCTTTCTCAATGAATT+TGG | 0.155637 | 3.1:-88520049 | None:intergenic |
TCATCGGTGTCAAGCATATT+CGG | 0.397952 | 3.1:+88520007 | MS.gene23923:CDS |
TCATTGAGAAAGAAAGCAAT+TGG | 0.425202 | 3.1:+88520055 | MS.gene23923:CDS |
GAAATGACAATTGTAAAATC+AGG | 0.433333 | 3.1:-88520238 | None:intergenic |
CATCACTGTCGGATAGGAAT+CGG | 0.473566 | 3.1:+88520179 | MS.gene23923:CDS |
TGTCAAGCATATTCGGATGC+GGG | 0.490823 | 3.1:+88520014 | MS.gene23923:CDS |
AAGGTACCAAATCAAGTAGA+AGG | 0.494390 | 3.1:-88520307 | None:intergenic |
AGAAAGCAATTGGAATTGAA+AGG | 0.494556 | 3.1:+88520065 | MS.gene23923:CDS |
GTAGAAGGAGTAGGAGGCGG+AGG | 0.503700 | 3.1:-88520292 | None:intergenic |
TGTGCAGTTGCTTTCTTCTG+TGG | 0.507932 | 3.1:-88520130 | None:intergenic |
GGCAAAGGAGCATACTCTGT+TGG | 0.555146 | 3.1:-88520205 | None:intergenic |
TCAGGAGGCAGTGGTGGCAA+AGG | 0.562798 | 3.1:-88520220 | None:intergenic |
CCAAATCAAGTAGAAGGAGT+AGG | 0.568811 | 3.1:-88520301 | None:intergenic |
ATTGTAAAATCAGGAGGCAG+TGG | 0.573977 | 3.1:-88520229 | None:intergenic |
GTGTCAAGCATATTCGGATG+CGG | 0.575890 | 3.1:+88520013 | MS.gene23923:CDS |
CAAGTAGAAGGAGTAGGAGG+CGG | 0.578017 | 3.1:-88520295 | None:intergenic |
TGATGCATCATCAACGGCCA+CGG | 0.584871 | 3.1:+88520264 | MS.gene23923:CDS |
TTCTGCTGATGCATCATCAA+CGG | 0.592398 | 3.1:+88520258 | MS.gene23923:CDS |
GTCAAGCATATTCGGATGCG+GGG | 0.596492 | 3.1:+88520015 | MS.gene23923:CDS |
GTAAAATCAGGAGGCAGTGG+TGG | 0.601246 | 3.1:-88520226 | None:intergenic |
AATCAAGTAGAAGGAGTAGG+AGG | 0.618321 | 3.1:-88520298 | None:intergenic |
ATGACAATTGTAAAATCAGG+AGG | 0.620980 | 3.1:-88520235 | None:intergenic |
GAAAGGAGAAATGTATGTGG+AGG | 0.621499 | 3.1:+88520082 | MS.gene23923:CDS |
ATTGAAAGGAGAAATGTATG+TGG | 0.642127 | 3.1:+88520079 | MS.gene23923:CDS |
CTGCACATCACATGAAGACG+AGG | 0.645185 | 3.1:+88520146 | MS.gene23923:CDS |
AGGAGGCGGAGGAACAACCG+TGG | 0.742635 | 3.1:-88520281 | None:intergenic |
TGTTGATAGAGTGTTCATCG+AGG | 0.792218 | 3.1:+88520107 | MS.gene23923:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | GAAATGACAATTGTAAAATC+AGG | - | chr3.1:88520241-88520260 | None:intergenic | 25.0% |
AGAAAGCAATTGGAATTGAA+AGG | + | chr3.1:88520065-88520084 | MS.gene23923:CDS | 30.0% | |
ATGACAATTGTAAAATCAGG+AGG | - | chr3.1:88520238-88520257 | None:intergenic | 30.0% | |
ATTGAAAGGAGAAATGTATG+TGG | + | chr3.1:88520079-88520098 | MS.gene23923:CDS | 30.0% | |
GCTTTCTTTCTCAATGAATT+TGG | - | chr3.1:88520052-88520071 | None:intergenic | 30.0% | |
TCATTGAGAAAGAAAGCAAT+TGG | + | chr3.1:88520055-88520074 | MS.gene23923:CDS | 30.0% | |
AAAAATCATCACTGTCGGAT+AGG | + | chr3.1:88520173-88520192 | MS.gene23923:CDS | 35.0% | |
!!! | ATCCGACAGTGATGATTTTT+TGG | - | chr3.1:88520173-88520192 | None:intergenic | 35.0% |
!!! | TCCGACAGTGATGATTTTTT+GGG | - | chr3.1:88520172-88520191 | None:intergenic | 35.0% |
ATTGTAAAATCAGGAGGCAG+TGG | - | chr3.1:88520232-88520251 | None:intergenic | 40.0% | |
GAAAGGAGAAATGTATGTGG+AGG | + | chr3.1:88520082-88520101 | MS.gene23923:CDS | 40.0% | |
GCCCAAAAAATCATCACTGT+CGG | + | chr3.1:88520168-88520187 | MS.gene23923:CDS | 40.0% | |
TTCTGCTGATGCATCATCAA+CGG | + | chr3.1:88520258-88520277 | MS.gene23923:CDS | 40.0% | |
! | TGTTGATAGAGTGTTCATCG+AGG | + | chr3.1:88520107-88520126 | MS.gene23923:CDS | 40.0% |
!! | TCATCGGTGTCAAGCATATT+CGG | + | chr3.1:88520007-88520026 | MS.gene23923:CDS | 40.0% |
CATCACTGTCGGATAGGAAT+CGG | + | chr3.1:88520179-88520198 | MS.gene23923:CDS | 45.0% | |
GTGTCAAGCATATTCGGATG+CGG | + | chr3.1:88520013-88520032 | MS.gene23923:CDS | 45.0% | |
TGTCAAGCATATTCGGATGC+GGG | + | chr3.1:88520014-88520033 | MS.gene23923:CDS | 45.0% | |
! | TGTGCAGTTGCTTTCTTCTG+TGG | - | chr3.1:88520133-88520152 | None:intergenic | 45.0% |
CAAGTAGAAGGAGTAGGAGG+CGG | - | chr3.1:88520298-88520317 | None:intergenic | 50.0% | |
CTGCACATCACATGAAGACG+AGG | + | chr3.1:88520146-88520165 | MS.gene23923:CDS | 50.0% | |
GTAAAATCAGGAGGCAGTGG+TGG | - | chr3.1:88520229-88520248 | None:intergenic | 50.0% | |
GTCAAGCATATTCGGATGCG+GGG | + | chr3.1:88520015-88520034 | MS.gene23923:CDS | 50.0% | |
TGATGCATCATCAACGGCCA+CGG | + | chr3.1:88520264-88520283 | MS.gene23923:CDS | 50.0% | |
! | GGCAAAGGAGCATACTCTGT+TGG | - | chr3.1:88520208-88520227 | None:intergenic | 50.0% |
GTAGAAGGAGTAGGAGGCGG+AGG | - | chr3.1:88520295-88520314 | None:intergenic | 60.0% | |
TCAGGAGGCAGTGGTGGCAA+AGG | - | chr3.1:88520223-88520242 | None:intergenic | 60.0% | |
AGGAGGCGGAGGAACAACCG+TGG | - | chr3.1:88520284-88520303 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 88520004 | 88520318 | 88520004 | ID=MS.gene23923 |
chr3.1 | mRNA | 88520004 | 88520318 | 88520004 | ID=MS.gene23923.t1;Parent=MS.gene23923 |
chr3.1 | exon | 88520004 | 88520318 | 88520004 | ID=MS.gene23923.t1.exon1;Parent=MS.gene23923.t1 |
chr3.1 | CDS | 88520004 | 88520318 | 88520004 | ID=cds.MS.gene23923.t1;Parent=MS.gene23923.t1 |
Gene Sequence |
Protein sequence |