Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25220.t1 | RHN48808.1 | 96.1 | 583 | 22 | 1 | 1 | 582 | 50 | 632 | 3.40E-222 | 781.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25220.t1 | A0A396H7N9 | 96.1 | 583 | 22 | 1 | 1 | 582 | 50 | 632 | 2.5e-222 | 781.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25220 | 0.846448 | 2.16E-59 | -1.69E-46 |
| MS.gene049983 | MS.gene25220 | 0.812094 | 5.04E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene25220 | 0.806565 | 7.73E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene25220 | 0.829036 | 6.44E-55 | -1.69E-46 |
| MS.gene051184 | MS.gene25220 | 0.808532 | 2.96E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene25220 | 0.830476 | 2.87E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene25220 | 0.808608 | 2.85E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene25220 | 0.804443 | 2.16E-49 | -1.69E-46 |
| MS.gene051852 | MS.gene25220 | 0.804927 | 1.71E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene25220 | 0.829939 | 3.89E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene25220 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene052493 | MS.gene25220 | 0.832371 | 9.82E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene25220 | 0.824102 | 9.68E-54 | -1.69E-46 |
| MS.gene052681 | MS.gene25220 | 0.807783 | 4.27E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene25220 | 0.809963 | 1.46E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene25220 | 0.820604 | 6.28E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene25220 | 0.827136 | 1.85E-54 | -1.69E-46 |
| MS.gene054641 | MS.gene25220 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene25220 | 0.831743 | 1.40E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene25220 | 0.83069 | 2.55E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene25220 | 0.828158 | 1.05E-54 | -1.69E-46 |
| MS.gene055827 | MS.gene25220 | 0.804788 | 1.83E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene25220 | 0.867639 | 1.18E-65 | -1.69E-46 |
| MS.gene055926 | MS.gene25220 | 0.805854 | 1.09E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene25220 | 0.840703 | 7.41E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene25220 | 0.810859 | 9.35E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene25220 | 0.801357 | 9.35E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene25220 | 0.812099 | 5.03E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene25220 | 0.815983 | 6.99E-52 | -1.69E-46 |
| MS.gene058278 | MS.gene25220 | 0.806623 | 7.52E-50 | -1.69E-46 |
| MS.gene058289 | MS.gene25220 | 0.820901 | 5.37E-53 | -1.69E-46 |
| MS.gene058427 | MS.gene25220 | 0.802238 | 6.17E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene25220 | 0.838549 | 2.69E-57 | -1.69E-46 |
| MS.gene058543 | MS.gene25220 | 0.808813 | 2.58E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene25220 | 0.812039 | 5.18E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene25220 | 0.851788 | 7.06E-61 | -1.69E-46 |
| MS.gene059283 | MS.gene25220 | 0.844154 | 9.01E-59 | -1.69E-46 |
| MS.gene059439 | MS.gene25220 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene25220 | 0.833931 | 4.02E-56 | -1.69E-46 |
| MS.gene060167 | MS.gene25220 | 0.804671 | 1.93E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene25220 | 0.803432 | 3.50E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene25220 | 0.805471 | 1.31E-49 | -1.69E-46 |
| MS.gene060380 | MS.gene25220 | 0.801694 | 7.98E-49 | -1.69E-46 |
| MS.gene060520 | MS.gene25220 | 0.801349 | 9.39E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene25220 | 0.837228 | 5.88E-57 | -1.69E-46 |
| MS.gene060697 | MS.gene25220 | 0.834483 | 2.92E-56 | -1.69E-46 |
| MS.gene060777 | MS.gene25220 | 0.806416 | 8.31E-50 | -1.69E-46 |
| MS.gene060785 | MS.gene25220 | 0.809343 | 1.98E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene25220 | 0.811512 | 6.75E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene25220 | 0.84471 | 6.39E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene25220 | 0.823531 | 1.32E-53 | -1.69E-46 |
| MS.gene06121 | MS.gene25220 | 0.826981 | 2.01E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTAATTATTTGCATTT+TGG | 0.186628 | 7.3:-7454672 | None:intergenic |
| ATCTTCAATATTTGCTTCTA+TGG | 0.193108 | 7.3:-7455133 | None:intergenic |
| ATTCTCACCATTTCTTATAA+AGG | 0.226461 | 7.3:-7453164 | None:intergenic |
| CGACAATCTCACAATTCTTT+TGG | 0.239123 | 7.3:-7455092 | None:intergenic |
| TTGTAGGGCAATAGGGAATT+TGG | 0.245211 | 7.3:+7454250 | MS.gene25220:intron |
| TTCATTTCAAGGCAACTTAT+TGG | 0.246795 | 7.3:+7454311 | MS.gene25220:CDS |
| GTTAGACTTACCTGAAGTTT+TGG | 0.259196 | 7.3:-7455497 | None:intergenic |
| GCCTTGAAATGAAATTTATA+AGG | 0.259631 | 7.3:-7454301 | None:intergenic |
| TTCAATAAGCAATGTATTAT+AGG | 0.275063 | 7.3:-7452970 | None:intergenic |
| CTCACAACACCCTTTGCTTC+AGG | 0.277935 | 7.3:-7453902 | None:intergenic |
| TATGTTGCTGCTTGGTCCTT+TGG | 0.311330 | 7.3:-7455445 | None:intergenic |
| TTCTCACCATTTCTTATAAA+GGG | 0.318688 | 7.3:-7453163 | None:intergenic |
| CATCTGAAAGAAGTTATTTC+CGG | 0.324574 | 7.3:+7453963 | MS.gene25220:CDS |
| GATGTATTGCTTTCCTCAAA+TGG | 0.327557 | 7.3:-7454910 | None:intergenic |
| GTGCTATTTGTTCTCCAGTC+TGG | 0.329723 | 7.3:-7453490 | None:intergenic |
| CCCTTATAAATTTCATTTCA+AGG | 0.335848 | 7.3:+7454300 | MS.gene25220:CDS |
| GAGAACAAATAGCACTAATA+AGG | 0.341307 | 7.3:+7453498 | MS.gene25220:CDS |
| CTTATTGAAGGCTATGTAGA+TGG | 0.348985 | 7.3:+7452984 | MS.gene25220:CDS |
| GAGATCGCAGAAGCAGATAT+TGG | 0.371598 | 7.3:+7454985 | MS.gene25220:CDS |
| AAAATTAATGAGACTATTGA+TGG | 0.372387 | 7.3:+7453860 | MS.gene25220:CDS |
| ATCTCGAAATCCAAAACTTC+AGG | 0.378941 | 7.3:+7455487 | MS.gene25220:CDS |
| AATCATCCCTTTATAAGAAA+TGG | 0.382734 | 7.3:+7453157 | MS.gene25220:CDS |
| TCAATAAGCAATGTATTATA+GGG | 0.386854 | 7.3:-7452969 | None:intergenic |
| TATAATACATTGCTTATTGA+AGG | 0.397643 | 7.3:+7452972 | MS.gene25220:CDS |
| TATCAGCTCAAATGTAAAAC+AGG | 0.404649 | 7.3:+7455251 | MS.gene25220:CDS |
| ATTTCATCAGTTCAGAAATA+CGG | 0.409322 | 7.3:+7455297 | MS.gene25220:CDS |
| CCTTGAAATGAAATTTATAA+GGG | 0.411284 | 7.3:-7454300 | None:intergenic |
| TTAGTCAAAGTAAGCAAGAT+TGG | 0.417597 | 7.3:+7454617 | MS.gene25220:CDS |
| CTTCTTTCGACAGTTAAAAC+AGG | 0.422510 | 7.3:+7452899 | MS.gene25220:intron |
| ATTGAATATGATAATATAAG+AGG | 0.428070 | 7.3:+7455201 | MS.gene25220:CDS |
| TTAGCACATCAAGGACTGAT+TGG | 0.429890 | 7.3:+7452676 | MS.gene25220:CDS |
| CTCCATGGCCACTGTCTACA+AGG | 0.436068 | 7.3:+7453637 | MS.gene25220:CDS |
| TGATACATCTATTGTGCTAA+AGG | 0.436279 | 7.3:+7455068 | MS.gene25220:CDS |
| GGGAGGTTATGTTATACAAA+AGG | 0.451155 | 7.3:+7453937 | MS.gene25220:CDS |
| ATGAACGGCGACAAAGAATT+CGG | 0.464485 | 7.3:+7454472 | MS.gene25220:CDS |
| TCCCGTAGTATGTTGCTGCT+TGG | 0.470591 | 7.3:-7455453 | None:intergenic |
| TGTGACTGACCAACATCAAC+AGG | 0.471454 | 7.3:-7453008 | None:intergenic |
| GTTGTGAGAATTGATTTGTT+GGG | 0.475038 | 7.3:+7453917 | MS.gene25220:CDS |
| AGTACACGACATTCCATTTG+AGG | 0.475441 | 7.3:+7454897 | MS.gene25220:CDS |
| AGGCTTTAGAAACATTAGAA+AGG | 0.478529 | 7.3:+7455271 | MS.gene25220:CDS |
| GATACATCTATTGTGCTAAA+GGG | 0.484119 | 7.3:+7455069 | MS.gene25220:CDS |
| ATCCATAGCATTTGATTCAT+CGG | 0.487059 | 7.3:-7454548 | None:intergenic |
| GGCTTTAGAAACATTAGAAA+GGG | 0.487114 | 7.3:+7455272 | MS.gene25220:CDS |
| AGATATTGTACAAATTGAAA+AGG | 0.488307 | 7.3:+7455152 | MS.gene25220:CDS |
| GTATTATAGGGAGTTCCCTC+TGG | 0.491261 | 7.3:-7452957 | None:intergenic |
| TGACAGCTTTATGCGTCTCA+TGG | 0.495714 | 7.3:+7453133 | MS.gene25220:intron |
| CTTTGACTAAGCTCTTCAGC+AGG | 0.503153 | 7.3:-7454604 | None:intergenic |
| TGTTGTGAGAATTGATTTGT+TGG | 0.503261 | 7.3:+7453916 | MS.gene25220:CDS |
| TAGTCAAAGTAAGCAAGATT+GGG | 0.503463 | 7.3:+7454618 | MS.gene25220:CDS |
| GACCAAGCAGCAACATACTA+CGG | 0.504286 | 7.3:+7455451 | MS.gene25220:CDS |
| TCAAGGCAACTTATTGGCAG+TGG | 0.505086 | 7.3:+7454317 | MS.gene25220:CDS |
| TGTTTGCAGAAGGTCCAGAC+TGG | 0.509433 | 7.3:+7453476 | MS.gene25220:CDS |
| AAGTAAATGACATTTCAGTC+GGG | 0.509863 | 7.3:+7455040 | MS.gene25220:CDS |
| GATGCAGTAACTTTGAAAGT+AGG | 0.512463 | 7.3:-7453449 | None:intergenic |
| TGCATCTGATTGTTTGCAGA+AGG | 0.516483 | 7.3:+7453466 | MS.gene25220:CDS |
| TACCGATGAATCAAATGCTA+TGG | 0.518027 | 7.3:+7454546 | MS.gene25220:CDS |
| AAAGTAAATGACATTTCAGT+CGG | 0.519463 | 7.3:+7455039 | MS.gene25220:CDS |
| ATGAAATTTATAAGGGATGG+AGG | 0.526404 | 7.3:-7454293 | None:intergenic |
| AGGGAATTTGGATATCAAGC+TGG | 0.527263 | 7.3:+7454262 | MS.gene25220:CDS |
| GAAATGAAATTTATAAGGGA+TGG | 0.541927 | 7.3:-7454296 | None:intergenic |
| AAAAGATGTATCACCTTCCT+CGG | 0.546283 | 7.3:-7454770 | None:intergenic |
| GACAGCTTTATGCGTCTCAT+GGG | 0.548438 | 7.3:+7453134 | MS.gene25220:intron |
| AGAGATTGTACAAATTGAGA+AGG | 0.555855 | 7.3:+7454864 | MS.gene25220:CDS |
| AGTGCTTCTGCAGATGAAAG+TGG | 0.566002 | 7.3:+7452648 | MS.gene25220:CDS |
| CATGACATTTCAACCGAGGA+AGG | 0.569041 | 7.3:+7454757 | MS.gene25220:CDS |
| AGAGATTGTACAAAGTGAGA+AGG | 0.571592 | 7.3:+7454720 | MS.gene25220:CDS |
| TCCCTTGTAGACAGTGGCCA+TGG | 0.571642 | 7.3:-7453639 | None:intergenic |
| AAGAAAGGATGAAGCCTCCA+TGG | 0.577075 | 7.3:+7453622 | MS.gene25220:intron |
| ACCAAGCAGCAACATACTAC+GGG | 0.580272 | 7.3:+7455452 | MS.gene25220:CDS |
| TGAATCAAATGCTATGGATG+AGG | 0.587498 | 7.3:+7454552 | MS.gene25220:CDS |
| TGGTTTCAGACTTTATCAGA+AGG | 0.594007 | 7.3:+7454337 | MS.gene25220:CDS |
| GAAAATGATGTCAGTGCCAA+AGG | 0.594639 | 7.3:+7455429 | MS.gene25220:CDS |
| GTGGAGGATTTAGCACATCA+AGG | 0.603076 | 7.3:+7452667 | MS.gene25220:CDS |
| GTGAGAATTGATTTGTTGGG+AGG | 0.607741 | 7.3:+7453920 | MS.gene25220:CDS |
| CTTGTAGACAGTGGCCATGG+AGG | 0.613608 | 7.3:-7453636 | None:intergenic |
| TGATGTGATTCCTGAAGCAA+AGG | 0.614045 | 7.3:+7453892 | MS.gene25220:CDS |
| AACATACAACAAGTCAGTCA+AGG | 0.623049 | 7.3:-7454500 | None:intergenic |
| GCTGTAGCTTCTAAGATGAA+CGG | 0.631947 | 7.3:+7454457 | MS.gene25220:CDS |
| AGTAAATGACATTTCAGTCG+GGG | 0.634575 | 7.3:+7455041 | MS.gene25220:CDS |
| GTAGATGGACCTGTTGATGT+TGG | 0.638645 | 7.3:+7452999 | MS.gene25220:CDS |
| TTCCGCGTTATGTATCGTGA+AGG | 0.644276 | 7.3:+7452933 | MS.gene25220:CDS |
| CAAAATGCAAATAATTACAA+TGG | 0.645911 | 7.3:+7454673 | MS.gene25220:CDS |
| TCCATGGCCACTGTCTACAA+GGG | 0.652310 | 7.3:+7453638 | MS.gene25220:CDS |
| AATACGGATTTCGTTCACGC+AGG | 0.658313 | 7.3:+7455313 | MS.gene25220:CDS |
| ATGGCCACTGTCTACAAGGG+AGG | 0.663692 | 7.3:+7453641 | MS.gene25220:CDS |
| ATGTATCGTGAAGGACCAGA+GGG | 0.667773 | 7.3:+7452942 | MS.gene25220:CDS |
| TATGTATCGTGAAGGACCAG+AGG | 0.674519 | 7.3:+7452941 | MS.gene25220:CDS |
| CGGCGACAAAGAATTCGGCA+AGG | 0.680174 | 7.3:+7454477 | MS.gene25220:CDS |
| GATGTGATTCCTGAAGCAAA+GGG | 0.685960 | 7.3:+7453893 | MS.gene25220:CDS |
| ACAGCCTCCCTTGTAGACAG+TGG | 0.690378 | 7.3:-7453645 | None:intergenic |
| GCTTCTGCAGATGAAAGTGG+AGG | 0.692008 | 7.3:+7452651 | MS.gene25220:CDS |
| AAAGTAGGAACAGTAAACTG+TGG | 0.716270 | 7.3:-7453434 | None:intergenic |
| AGTGCATGACATTTCAACCG+AGG | 0.717008 | 7.3:+7454753 | MS.gene25220:CDS |
| ACAGTTAAAACAGGATAACG+AGG | 0.723822 | 7.3:+7452908 | MS.gene25220:intron |
| GTCCTTCACGATACATAACG+CGG | 0.774533 | 7.3:-7452935 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATCAAAATATATAATA+TGG | - | chr7.3:7453087-7453106 | None:intergenic | 10.0% |
| !! | AGAACAATTAATGAAAATTA+TGG | + | chr7.3:7453309-7453328 | MS.gene25220:intron | 15.0% |
| !! | ATTGAATATGATAATATAAG+AGG | + | chr7.3:7455201-7455220 | MS.gene25220:CDS | 15.0% |
| !! | GATAAAAATAAAACAAAACT+TGG | - | chr7.3:7452731-7452750 | None:intergenic | 15.0% |
| !! | TGAAACAAAATATTACTTAT+TGG | - | chr7.3:7454177-7454196 | None:intergenic | 15.0% |
| !!! | ATAAGTAATATTTTGTTTCA+TGG | + | chr7.3:7454177-7454196 | MS.gene25220:intron | 15.0% |
| !!! | ATTTTATATCATTTGTTGAT+TGG | + | chr7.3:7454033-7454052 | MS.gene25220:intron | 15.0% |
| !!! | ATTTTTCAATTAAATTCTCA+AGG | + | chr7.3:7452859-7452878 | MS.gene25220:intron | 15.0% |
| !!! | ATTTTTTGTCAAATTTTGTA+GGG | + | chr7.3:7454235-7454254 | MS.gene25220:intron | 15.0% |
| !!! | TATTTTTTGTCAAATTTTGT+AGG | + | chr7.3:7454234-7454253 | MS.gene25220:intron | 15.0% |
| !! | AAAATTAATGAGACTATTGA+TGG | + | chr7.3:7453860-7453879 | MS.gene25220:CDS | 20.0% |
| !! | AGAAATGAAAATTGTGATAA+AGG | - | chr7.3:7453407-7453426 | None:intergenic | 20.0% |
| !! | AGATATTGTACAAATTGAAA+AGG | + | chr7.3:7455152-7455171 | MS.gene25220:CDS | 20.0% |
| !! | CAAAATGCAAATAATTACAA+TGG | + | chr7.3:7454673-7454692 | MS.gene25220:CDS | 20.0% |
| !! | CCTTGAAATGAAATTTATAA+GGG | - | chr7.3:7454303-7454322 | None:intergenic | 20.0% |
| !! | TATAATACATTGCTTATTGA+AGG | + | chr7.3:7452972-7452991 | MS.gene25220:CDS | 20.0% |
| !! | TCAATAAGCAATGTATTATA+GGG | - | chr7.3:7452972-7452991 | None:intergenic | 20.0% |
| !! | TTAGAAATTTCTCTTTCATT+GGG | + | chr7.3:7454079-7454098 | MS.gene25220:intron | 20.0% |
| !! | TTCAATAAGCAATGTATTAT+AGG | - | chr7.3:7452973-7452992 | None:intergenic | 20.0% |
| !! | TTCGTTGTTAAACTTAAAAA+GGG | - | chr7.3:7453062-7453081 | None:intergenic | 20.0% |
| !!! | AATACATCTTTTGTACTAAA+AGG | + | chr7.3:7454925-7454944 | MS.gene25220:CDS | 20.0% |
| !!! | CATTGTAATTATTTGCATTT+TGG | - | chr7.3:7454675-7454694 | None:intergenic | 20.0% |
| !!! | TTTATGCTTAATTTTATCTC+AGG | + | chr7.3:7453823-7453842 | MS.gene25220:intron | 20.0% |
| ! | AAAGTAAATGACATTTCAGT+CGG | + | chr7.3:7455039-7455058 | MS.gene25220:CDS | 25.0% |
| ! | AATCATCCCTTTATAAGAAA+TGG | + | chr7.3:7453157-7453176 | MS.gene25220:CDS | 25.0% |
| ! | ACTCATGAATATCTATGTAA+GGG | + | chr7.3:7453278-7453297 | MS.gene25220:intron | 25.0% |
| ! | ATCTTCAATATTTGCTTCTA+TGG | - | chr7.3:7455136-7455155 | None:intergenic | 25.0% |
| ! | ATTCTCACCATTTCTTATAA+AGG | - | chr7.3:7453167-7453186 | None:intergenic | 25.0% |
| ! | ATTTCATCAGTTCAGAAATA+CGG | + | chr7.3:7455297-7455316 | MS.gene25220:CDS | 25.0% |
| ! | CCCTTATAAATTTCATTTCA+AGG | + | chr7.3:7454300-7454319 | MS.gene25220:CDS | 25.0% |
| ! | CTTCGTTGTTAAACTTAAAA+AGG | - | chr7.3:7453063-7453082 | None:intergenic | 25.0% |
| ! | GAAATGAAATTTATAAGGGA+TGG | - | chr7.3:7454299-7454318 | None:intergenic | 25.0% |
| ! | GCCTTGAAATGAAATTTATA+AGG | - | chr7.3:7454304-7454323 | None:intergenic | 25.0% |
| ! | GTATGCTTAATAATATCAGT+TGG | - | chr7.3:7453345-7453364 | None:intergenic | 25.0% |
| ! | GTTAGAAATTTCTCTTTCAT+TGG | + | chr7.3:7454078-7454097 | MS.gene25220:intron | 25.0% |
| ! | TCATCCTTTCTTACAAAATA+TGG | - | chr7.3:7453614-7453633 | None:intergenic | 25.0% |
| ! | TTCTCACCATTTCTTATAAA+GGG | - | chr7.3:7453166-7453185 | None:intergenic | 25.0% |
| !! | ATTGATAACTTCATTTCAGA+AGG | + | chr7.3:7452753-7452772 | MS.gene25220:intron | 25.0% |
| !! | TATCACAATTTTCATTTCTC+AGG | + | chr7.3:7453408-7453427 | MS.gene25220:intron | 25.0% |
| !! | TCTGAAATGAAGTTATCAAT+TGG | - | chr7.3:7452753-7452772 | None:intergenic | 25.0% |
| !! | TGTTCCATATTTTGTAAGAA+AGG | + | chr7.3:7453607-7453626 | MS.gene25220:intron | 25.0% |
| !! | TTGATAACTTCATTTCAGAA+GGG | + | chr7.3:7452754-7452773 | MS.gene25220:intron | 25.0% |
| !!! | GATAGTAGTTCTTTTGAAAA+CGG | + | chr7.3:7453707-7453726 | MS.gene25220:CDS | 25.0% |
| AAGTAAATGACATTTCAGTC+GGG | + | chr7.3:7455040-7455059 | MS.gene25220:CDS | 30.0% | |
| ACTCACTTAAAAAAACTCAC+CGG | - | chr7.3:7453985-7454004 | None:intergenic | 30.0% | |
| AGAAACAGAAAAAAAGATCG+AGG | - | chr7.3:7453739-7453758 | None:intergenic | 30.0% | |
| AGAGATTGTACAAATTGAGA+AGG | + | chr7.3:7454864-7454883 | MS.gene25220:CDS | 30.0% | |
| ATACAAGCATTCAAAAGTGA+AGG | - | chr7.3:7453587-7453606 | None:intergenic | 30.0% | |
| ATCCATAGCATTTGATTCAT+CGG | - | chr7.3:7454551-7454570 | None:intergenic | 30.0% | |
| ATGAAATTTATAAGGGATGG+AGG | - | chr7.3:7454296-7454315 | None:intergenic | 30.0% | |
| ATTGGGTGAAAAATATGTCT+CGG | + | chr7.3:7454635-7454654 | MS.gene25220:CDS | 30.0% | |
| ATTGTTACACAAGATTGCAT+TGG | - | chr7.3:7452796-7452815 | None:intergenic | 30.0% | |
| CACTCATGAATATCTATGTA+AGG | + | chr7.3:7453277-7453296 | MS.gene25220:intron | 30.0% | |
| GAGAACAAATAGCACTAATA+AGG | + | chr7.3:7453498-7453517 | MS.gene25220:CDS | 30.0% | |
| GATACATCTATTGTGCTAAA+GGG | + | chr7.3:7455069-7455088 | MS.gene25220:CDS | 30.0% | |
| TAGTCAAAGTAAGCAAGATT+GGG | + | chr7.3:7454618-7454637 | MS.gene25220:CDS | 30.0% | |
| TATCAGCTCAAATGTAAAAC+AGG | + | chr7.3:7455251-7455270 | MS.gene25220:CDS | 30.0% | |
| TGATAACTTCATTTCAGAAG+GGG | + | chr7.3:7452755-7452774 | MS.gene25220:intron | 30.0% | |
| TGATACATCTATTGTGCTAA+AGG | + | chr7.3:7455068-7455087 | MS.gene25220:CDS | 30.0% | |
| TTAGTCAAAGTAAGCAAGAT+TGG | + | chr7.3:7454617-7454636 | MS.gene25220:CDS | 30.0% | |
| TTCATTTCAAGGCAACTTAT+TGG | + | chr7.3:7454311-7454330 | MS.gene25220:CDS | 30.0% | |
| ! | AATGGTCAGATTTTAGATAC+AGG | + | chr7.3:7454691-7454710 | MS.gene25220:CDS | 30.0% |
| ! | CATCTGAAAGAAGTTATTTC+CGG | + | chr7.3:7453963-7453982 | MS.gene25220:CDS | 30.0% |
| ! | CCTTGGTTATTTAACTTCTT+CGG | + | chr7.3:7454108-7454127 | MS.gene25220:intron | 30.0% |
| ! | GATACATCTTTTGTACTACA+TGG | + | chr7.3:7454781-7454800 | MS.gene25220:CDS | 30.0% |
| ! | TAATAATATCAGTTGGTGTC+TGG | - | chr7.3:7453338-7453357 | None:intergenic | 30.0% |
| ! | TCAAATTTTGTAGGGCAATA+GGG | + | chr7.3:7454243-7454262 | MS.gene25220:intron | 30.0% |
| ! | TGAACAAGTTTTGCAGAATA+CGG | - | chr7.3:7455399-7455418 | None:intergenic | 30.0% |
| !! | AAAAGTGAAGGCGTTTAATA+TGG | - | chr7.3:7453575-7453594 | None:intergenic | 30.0% |
| !! | AGGCTTTAGAAACATTAGAA+AGG | + | chr7.3:7455271-7455290 | MS.gene25220:CDS | 30.0% |
| !! | GGCTTTAGAAACATTAGAAA+GGG | + | chr7.3:7455272-7455291 | MS.gene25220:CDS | 30.0% |
| !! | GTTGTGAGAATTGATTTGTT+GGG | + | chr7.3:7453917-7453936 | MS.gene25220:CDS | 30.0% |
| !! | TGTTGTGAGAATTGATTTGT+TGG | + | chr7.3:7453916-7453935 | MS.gene25220:CDS | 30.0% |
| AAAAGATGTATCACCTTCCT+CGG | - | chr7.3:7454773-7454792 | None:intergenic | 35.0% | |
| AAAGTAGGAACAGTAAACTG+TGG | - | chr7.3:7453437-7453456 | None:intergenic | 35.0% | |
| AACATACAACAAGTCAGTCA+AGG | - | chr7.3:7454503-7454522 | None:intergenic | 35.0% | |
| AACATTAGTAGTAGCTTGGA+AGG | + | chr7.3:7454010-7454029 | MS.gene25220:intron | 35.0% | |
| ACAGTTAAAACAGGATAACG+AGG | + | chr7.3:7452908-7452927 | MS.gene25220:intron | 35.0% | |
| AGAGATTGTACAAAGTGAGA+AGG | + | chr7.3:7454720-7454739 | MS.gene25220:CDS | 35.0% | |
| AGTAAATGACATTTCAGTCG+GGG | + | chr7.3:7455041-7455060 | MS.gene25220:CDS | 35.0% | |
| ATCTCGAAATCCAAAACTTC+AGG | + | chr7.3:7455487-7455506 | MS.gene25220:CDS | 35.0% | |
| ATGGCGAGTGAGATTAAAAT+GGG | - | chr7.3:7453556-7453575 | None:intergenic | 35.0% | |
| CAGAAGGGGAAAAAATTCAA+TGG | + | chr7.3:7452769-7452788 | MS.gene25220:intron | 35.0% | |
| CATGAATATCTATGTAAGGG+TGG | + | chr7.3:7453281-7453300 | MS.gene25220:intron | 35.0% | |
| CCGAAGAAGTTAAATAACCA+AGG | - | chr7.3:7454111-7454130 | None:intergenic | 35.0% | |
| CTCAAACATTAGTAGTAGCT+TGG | + | chr7.3:7454006-7454025 | MS.gene25220:intron | 35.0% | |
| CTTATTGAAGGCTATGTAGA+TGG | + | chr7.3:7452984-7453003 | MS.gene25220:CDS | 35.0% | |
| CTTCTTTCGACAGTTAAAAC+AGG | + | chr7.3:7452899-7452918 | MS.gene25220:intron | 35.0% | |
| GATGTATTGCTTTCCTCAAA+TGG | - | chr7.3:7454913-7454932 | None:intergenic | 35.0% | |
| GGGAGGTTATGTTATACAAA+AGG | + | chr7.3:7453937-7453956 | MS.gene25220:CDS | 35.0% | |
| TACCGATGAATCAAATGCTA+TGG | + | chr7.3:7454546-7454565 | MS.gene25220:CDS | 35.0% | |
| TATGGCGAGTGAGATTAAAA+TGG | - | chr7.3:7453557-7453576 | None:intergenic | 35.0% | |
| TGAATCAAATGCTATGGATG+AGG | + | chr7.3:7454552-7454571 | MS.gene25220:CDS | 35.0% | |
| TGGTTTCAGACTTTATCAGA+AGG | + | chr7.3:7454337-7454356 | MS.gene25220:CDS | 35.0% | |
| TTGGGTGAAAAATATGTCTC+GGG | + | chr7.3:7454636-7454655 | MS.gene25220:CDS | 35.0% | |
| ! | CACAATTTTCATTTCTCAGG+TGG | + | chr7.3:7453411-7453430 | MS.gene25220:intron | 35.0% |
| ! | CGACAATCTCACAATTCTTT+TGG | - | chr7.3:7455095-7455114 | None:intergenic | 35.0% |
| ! | CTGACATCATTTTCAACAGA+TGG | - | chr7.3:7455423-7455442 | None:intergenic | 35.0% |
| ! | GATGCAGTAACTTTGAAAGT+AGG | - | chr7.3:7453452-7453471 | None:intergenic | 35.0% |
| ! | GTCAAATTTTGTAGGGCAAT+AGG | + | chr7.3:7454242-7454261 | MS.gene25220:intron | 35.0% |
| ACAGCCTATAACAACACCAA+GGG | - | chr7.3:7454442-7454461 | None:intergenic | 40.0% | |
| AGGGAATTTGGATATCAAGC+TGG | + | chr7.3:7454262-7454281 | MS.gene25220:CDS | 40.0% | |
| AGTACACGACATTCCATTTG+AGG | + | chr7.3:7454897-7454916 | MS.gene25220:CDS | 40.0% | |
| ATGAACGGCGACAAAGAATT+CGG | + | chr7.3:7454472-7454491 | MS.gene25220:CDS | 40.0% | |
| CTTTCATTGGGTTTGAACCT+TGG | + | chr7.3:7454091-7454110 | MS.gene25220:intron | 40.0% | |
| GAAAATGATGTCAGTGCCAA+AGG | + | chr7.3:7455429-7455448 | MS.gene25220:CDS | 40.0% | |
| GATGTGATTCCTGAAGCAAA+GGG | + | chr7.3:7453893-7453912 | MS.gene25220:CDS | 40.0% | |
| TACAGCCTATAACAACACCA+AGG | - | chr7.3:7454443-7454462 | None:intergenic | 40.0% | |
| TCAAGGACTGATTGGAAAGT+AGG | + | chr7.3:7452684-7452703 | MS.gene25220:intron | 40.0% | |
| TGATGTGATTCCTGAAGCAA+AGG | + | chr7.3:7453892-7453911 | MS.gene25220:CDS | 40.0% | |
| TGCATCTGATTGTTTGCAGA+AGG | + | chr7.3:7453466-7453485 | MS.gene25220:CDS | 40.0% | |
| TTAGCACATCAAGGACTGAT+TGG | + | chr7.3:7452676-7452695 | MS.gene25220:CDS | 40.0% | |
| TTGTAGGGCAATAGGGAATT+TGG | + | chr7.3:7454250-7454269 | MS.gene25220:intron | 40.0% | |
| ! | CTTTTGTACTACATGGCAGT+AGG | + | chr7.3:7454788-7454807 | MS.gene25220:CDS | 40.0% |
| !! | GCTGTAGCTTCTAAGATGAA+CGG | + | chr7.3:7454457-7454476 | MS.gene25220:CDS | 40.0% |
| !! | GTGAGAATTGATTTGTTGGG+AGG | + | chr7.3:7453920-7453939 | MS.gene25220:CDS | 40.0% |
| AAGAAAGGATGAAGCCTCCA+TGG | + | chr7.3:7453622-7453641 | MS.gene25220:intron | 45.0% | |
| AATACGGATTTCGTTCACGC+AGG | + | chr7.3:7455313-7455332 | MS.gene25220:CDS | 45.0% | |
| ACCAAGCAGCAACATACTAC+GGG | + | chr7.3:7455452-7455471 | MS.gene25220:CDS | 45.0% | |
| AGTGCATGACATTTCAACCG+AGG | + | chr7.3:7454753-7454772 | MS.gene25220:CDS | 45.0% | |
| AGTGCTTCTGCAGATGAAAG+TGG | + | chr7.3:7452648-7452667 | MS.gene25220:CDS | 45.0% | |
| ATGTATCGTGAAGGACCAGA+GGG | + | chr7.3:7452942-7452961 | MS.gene25220:CDS | 45.0% | |
| CATGACATTTCAACCGAGGA+AGG | + | chr7.3:7454757-7454776 | MS.gene25220:CDS | 45.0% | |
| CTTTGACTAAGCTCTTCAGC+AGG | - | chr7.3:7454607-7454626 | None:intergenic | 45.0% | |
| GACCAAGCAGCAACATACTA+CGG | + | chr7.3:7455451-7455470 | MS.gene25220:CDS | 45.0% | |
| GAGATCGCAGAAGCAGATAT+TGG | + | chr7.3:7454985-7455004 | MS.gene25220:CDS | 45.0% | |
| GGTGAAAAATATGTCTCGGG+AGG | + | chr7.3:7454639-7454658 | MS.gene25220:CDS | 45.0% | |
| GTAGATGGACCTGTTGATGT+TGG | + | chr7.3:7452999-7453018 | MS.gene25220:CDS | 45.0% | |
| GTATTATAGGGAGTTCCCTC+TGG | - | chr7.3:7452960-7452979 | None:intergenic | 45.0% | |
| GTCCTTCACGATACATAACG+CGG | - | chr7.3:7452938-7452957 | None:intergenic | 45.0% | |
| GTGGAGGATTTAGCACATCA+AGG | + | chr7.3:7452667-7452686 | MS.gene25220:CDS | 45.0% | |
| TATGTATCGTGAAGGACCAG+AGG | + | chr7.3:7452941-7452960 | MS.gene25220:CDS | 45.0% | |
| TCAAGGCAACTTATTGGCAG+TGG | + | chr7.3:7454317-7454336 | MS.gene25220:CDS | 45.0% | |
| TGTGACTGACCAACATCAAC+AGG | - | chr7.3:7453011-7453030 | None:intergenic | 45.0% | |
| TTCCGCGTTATGTATCGTGA+AGG | + | chr7.3:7452933-7452952 | MS.gene25220:CDS | 45.0% | |
| ! | GACAGCTTTATGCGTCTCAT+GGG | + | chr7.3:7453134-7453153 | MS.gene25220:intron | 45.0% |
| ! | TATGTTGCTGCTTGGTCCTT+TGG | - | chr7.3:7455448-7455467 | None:intergenic | 45.0% |
| ! | TGACAGCTTTATGCGTCTCA+TGG | + | chr7.3:7453133-7453152 | MS.gene25220:intron | 45.0% |
| !! | GTGCTATTTGTTCTCCAGTC+TGG | - | chr7.3:7453493-7453512 | None:intergenic | 45.0% |
| CCTATAACAACACCAAGGGC+TGG | - | chr7.3:7454438-7454457 | None:intergenic | 50.0% | |
| CTCACAACACCCTTTGCTTC+AGG | - | chr7.3:7453905-7453924 | None:intergenic | 50.0% | |
| GCTTCTGCAGATGAAAGTGG+AGG | + | chr7.3:7452651-7452670 | MS.gene25220:CDS | 50.0% | |
| TCCATGGCCACTGTCTACAA+GGG | + | chr7.3:7453638-7453657 | MS.gene25220:CDS | 50.0% | |
| TCCCGTAGTATGTTGCTGCT+TGG | - | chr7.3:7455456-7455475 | None:intergenic | 50.0% | |
| TGTTTGCAGAAGGTCCAGAC+TGG | + | chr7.3:7453476-7453495 | MS.gene25220:CDS | 50.0% | |
| TTCTGACACTAACCAGCCCT+TGG | + | chr7.3:7454423-7454442 | MS.gene25220:intron | 50.0% | |
| !! | CCAGCCCTTGGTGTTGTTAT+AGG | + | chr7.3:7454435-7454454 | MS.gene25220:intron | 50.0% |
| ACAGCCTCCCTTGTAGACAG+TGG | - | chr7.3:7453648-7453667 | None:intergenic | 55.0% | |
| ATGGCCACTGTCTACAAGGG+AGG | + | chr7.3:7453641-7453660 | MS.gene25220:CDS | 55.0% | |
| CGGCGACAAAGAATTCGGCA+AGG | + | chr7.3:7454477-7454496 | MS.gene25220:CDS | 55.0% | |
| CTCCATGGCCACTGTCTACA+AGG | + | chr7.3:7453637-7453656 | MS.gene25220:CDS | 55.0% | |
| CTTGTAGACAGTGGCCATGG+AGG | - | chr7.3:7453639-7453658 | None:intergenic | 55.0% | |
| TCCCTTGTAGACAGTGGCCA+TGG | - | chr7.3:7453642-7453661 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 7452586 | 7455508 | 7452586 | ID=MS.gene25220 |
| chr7.3 | mRNA | 7452586 | 7455508 | 7452586 | ID=MS.gene25220.t1;Parent=MS.gene25220 |
| chr7.3 | exon | 7452586 | 7452701 | 7452586 | ID=MS.gene25220.t1.exon1;Parent=MS.gene25220.t1 |
| chr7.3 | CDS | 7452586 | 7452701 | 7452586 | ID=cds.MS.gene25220.t1;Parent=MS.gene25220.t1 |
| chr7.3 | exon | 7452912 | 7453020 | 7452912 | ID=MS.gene25220.t1.exon2;Parent=MS.gene25220.t1 |
| chr7.3 | CDS | 7452912 | 7453020 | 7452912 | ID=cds.MS.gene25220.t1;Parent=MS.gene25220.t1 |
| chr7.3 | exon | 7453139 | 7453178 | 7453139 | ID=MS.gene25220.t1.exon3;Parent=MS.gene25220.t1 |
| chr7.3 | CDS | 7453139 | 7453178 | 7453139 | ID=cds.MS.gene25220.t1;Parent=MS.gene25220.t1 |
| chr7.3 | exon | 7453430 | 7453519 | 7453430 | ID=MS.gene25220.t1.exon4;Parent=MS.gene25220.t1 |
| chr7.3 | CDS | 7453430 | 7453519 | 7453430 | ID=cds.MS.gene25220.t1;Parent=MS.gene25220.t1 |
| chr7.3 | exon | 7453629 | 7453728 | 7453629 | ID=MS.gene25220.t1.exon5;Parent=MS.gene25220.t1 |
| chr7.3 | CDS | 7453629 | 7453728 | 7453629 | ID=cds.MS.gene25220.t1;Parent=MS.gene25220.t1 |
| chr7.3 | exon | 7453845 | 7453984 | 7453845 | ID=MS.gene25220.t1.exon6;Parent=MS.gene25220.t1 |
| chr7.3 | CDS | 7453845 | 7453984 | 7453845 | ID=cds.MS.gene25220.t1;Parent=MS.gene25220.t1 |
| chr7.3 | exon | 7454256 | 7454358 | 7454256 | ID=MS.gene25220.t1.exon7;Parent=MS.gene25220.t1 |
| chr7.3 | CDS | 7454256 | 7454358 | 7454256 | ID=cds.MS.gene25220.t1;Parent=MS.gene25220.t1 |
| chr7.3 | exon | 7454457 | 7455508 | 7454457 | ID=MS.gene25220.t1.exon8;Parent=MS.gene25220.t1 |
| chr7.3 | CDS | 7454457 | 7455508 | 7454457 | ID=cds.MS.gene25220.t1;Parent=MS.gene25220.t1 |
| Gene Sequence |
| Protein sequence |
