Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80889.t1 | XP_003618765.1 | 100 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.00E-98 | 369.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80889.t1 | Q9C514 | 81.2 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 9.3e-85 | 314.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80889.t1 | G7KN51 | 100.0 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 7.3e-99 | 369.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene80889 | 0.852418 | 4.68E-61 | -1.69E-46 |
| MS.gene049376 | MS.gene80889 | 0.859785 | 3.25E-63 | -1.69E-46 |
| MS.gene049387 | MS.gene80889 | 0.818364 | 2.04E-52 | -1.69E-46 |
| MS.gene051925 | MS.gene80889 | 0.90566 | 3.39E-80 | -1.69E-46 |
| MS.gene051927 | MS.gene80889 | 0.898483 | 5.08E-77 | -1.69E-46 |
| MS.gene052666 | MS.gene80889 | 0.859911 | 2.98E-63 | -1.69E-46 |
| MS.gene057321 | MS.gene80889 | 0.818224 | 2.19E-52 | -1.69E-46 |
| MS.gene059832 | MS.gene80889 | 0.823189 | 1.58E-53 | -1.69E-46 |
| MS.gene060483 | MS.gene80889 | 0.800994 | 1.11E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80889 | MS.gene82426 | PPI |
| MS.gene028153 | MS.gene80889 | PPI |
| MS.gene80889 | MS.gene83444 | PPI |
| MS.gene80889 | MS.gene72768 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80889.t1 | MTR_6g021670 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 4.74e-139 | 385 |
| MS.gene80889.t1 | MTR_6g085000 | 99.476 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 7.51e-139 | 385 |
| MS.gene80889.t1 | MTR_8g087480 | 68.182 | 44 | 6 | 1 | 145 | 188 | 51 | 86 | 1.03e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80889.t1 | AT1G48830 | 81.152 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 3.40e-116 | 328 |
| MS.gene80889.t1 | AT1G48830 | 81.152 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 3.40e-116 | 328 |
| MS.gene80889.t1 | AT3G02560 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 1.10e-113 | 322 |
| MS.gene80889.t1 | AT3G02560 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 1.10e-113 | 322 |
| MS.gene80889.t1 | AT3G02560 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 1.10e-113 | 322 |
| MS.gene80889.t1 | AT5G16130 | 81.383 | 188 | 35 | 0 | 1 | 188 | 1 | 188 | 2.94e-113 | 320 |
Find 60 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGTATTGTTTCTCTCCTT+TGG | 0.252124 | 6.3:+15022599 | None:intergenic |
| TACAGCCAAGTCGATGTTTC+TGG | 0.252974 | 6.3:-15023609 | MS.gene80889:intron |
| TGAGCAGCGGAACCTTTCTT+TGG | 0.264696 | 6.3:+15022877 | None:intergenic |
| AGACATTCTCCGCTGTTTAC+AGG | 0.270663 | 6.3:-15022565 | MS.gene80889:CDS |
| AATCCCTTCCTCAATCTATA+TGG | 0.283281 | 6.3:+15023558 | None:intergenic |
| CGGTATTGTTTCTCTCCTTT+GGG | 0.288337 | 6.3:+15022600 | None:intergenic |
| AAATCCATGTCAGGCTTGTT+AGG | 0.290791 | 6.3:-15023530 | MS.gene80889:CDS |
| CGCACTAGGTACCGAGTTGA+TGG | 0.381805 | 6.3:-15022772 | MS.gene80889:CDS |
| CAATCCTCCTGGTGGCAATC+AGG | 0.389570 | 6.3:+15022908 | None:intergenic |
| AAGAAAATCAGCAAGGATAA+AGG | 0.404032 | 6.3:-15023933 | MS.gene80889:CDS |
| GAATGTCTCCAACTTGTATT+CGG | 0.427405 | 6.3:+15022580 | None:intergenic |
| GTATCCCGTTACCGAGGCTT+AGG | 0.429310 | 6.3:-15022513 | None:intergenic |
| TGAACCTAAGCCTCGGTAAC+GGG | 0.449926 | 6.3:+15022509 | None:intergenic |
| TGCTGAGCCAACTGAATTTG+AGG | 0.451294 | 6.3:-15023910 | MS.gene80889:CDS |
| GCAGCGGAACCTTTCTTTGG+TGG | 0.464310 | 6.3:+15022880 | None:intergenic |
| TTGCCACCAGGAGGATTGTT+AGG | 0.469557 | 6.3:-15022903 | MS.gene80889:CDS |
| ATCCCTTCCTCAATCTATAT+GGG | 0.481881 | 6.3:+15023559 | None:intergenic |
| GTGTTACCTGCCGAGATTGT+TGG | 0.493817 | 6.3:-15022799 | MS.gene80889:CDS |
| GCTGTTTACAGGAAACTATC+TGG | 0.499187 | 6.3:-15022554 | MS.gene80889:CDS |
| AGCAGTAAGTGTACGGCTAC+GGG | 0.503167 | 6.3:+15022849 | None:intergenic |
| TTCTGGCAACCGCAAGGCTG+TGG | 0.507229 | 6.3:-15023592 | MS.gene80889:CDS |
| AGATTGTTGGCAAGCGCACT+AGG | 0.510306 | 6.3:-15022786 | MS.gene80889:CDS |
| AATCCATGTCAGGCTTGTTA+GGG | 0.511974 | 6.3:-15023529 | MS.gene80889:CDS |
| ATTGTTAGGCCACCAAAGAA+AGG | 0.516136 | 6.3:-15022889 | MS.gene80889:CDS |
| GATTCCGCAAAATCCATGTC+AGG | 0.518236 | 6.3:-15023539 | MS.gene80889:CDS |
| ACTGAATTTGAGGAATCTGT+TGG | 0.520304 | 6.3:-15023900 | MS.gene80889:CDS |
| ATTTGAGGAATCTGTTGGAC+AGG | 0.525688 | 6.3:-15023895 | MS.gene80889:intron |
| CAGCAGTAAGTGTACGGCTA+CGG | 0.532367 | 6.3:+15022848 | None:intergenic |
| CGCTTGCCAACAATCTCGGC+AGG | 0.533088 | 6.3:+15022793 | None:intergenic |
| TGGTGGCCTAACAATCCTCC+TGG | 0.535312 | 6.3:+15022897 | None:intergenic |
| GTTTGAAGATGTTCACATCA+AGG | 0.540861 | 6.3:-15023956 | None:intergenic |
| AAACAATACCGAATACAAGT+TGG | 0.543122 | 6.3:-15022588 | MS.gene80889:CDS |
| TCCATGTCCCATATAGATTG+AGG | 0.544635 | 6.3:-15023566 | MS.gene80889:CDS |
| GTGAACCTAAGCCTCGGTAA+CGG | 0.554094 | 6.3:+15022508 | None:intergenic |
| GCTCCCTAACAAGCCTGACA+TGG | 0.561527 | 6.3:+15023526 | None:intergenic |
| TCCTCAATCTATATGGGACA+TGG | 0.562889 | 6.3:+15023565 | None:intergenic |
| ACAGATTCCTCAAATTCAGT+TGG | 0.566353 | 6.3:+15023903 | None:intergenic |
| ACCTAAGTGAACCTAAGCCT+CGG | 0.587539 | 6.3:+15022502 | None:intergenic |
| ATGTTATCCTGATTGCCACC+AGG | 0.588268 | 6.3:-15022915 | MS.gene80889:CDS |
| AGTGCGCTTGCCAACAATCT+CGG | 0.589160 | 6.3:+15022789 | None:intergenic |
| CGTGGACAGCAGTAAGTGTA+CGG | 0.599592 | 6.3:+15022842 | None:intergenic |
| CGAGAAGAAATTTAGCGGCA+AGG | 0.600668 | 6.3:-15023502 | MS.gene80889:intron |
| TGTCCCATATAGATTGAGGA+AGG | 0.607696 | 6.3:-15023562 | MS.gene80889:CDS |
| CGATGTTTCTGGCAACCGCA+AGG | 0.612148 | 6.3:-15023598 | MS.gene80889:CDS |
| GAGCTCGAGAAGAAATTTAG+CGG | 0.626349 | 6.3:-15023507 | MS.gene80889:CDS |
| GGTTGCCAGAAACATCGACT+TGG | 0.639023 | 6.3:+15023604 | None:intergenic |
| TGATGGATCAAAGATCATGA+AGG | 0.639271 | 6.3:-15022755 | MS.gene80889:intron |
| TGTCCACGAGGCAATGCTCG+AGG | 0.642990 | 6.3:-15022827 | MS.gene80889:CDS |
| GTCCCATATAGATTGAGGAA+GGG | 0.647191 | 6.3:-15023561 | MS.gene80889:CDS |
| ATCAAGGAAGAAAATCAGCA+AGG | 0.649740 | 6.3:-15023940 | MS.gene80889:CDS |
| CAGTAAGTGTACGGCTACGG+GGG | 0.652122 | 6.3:+15022851 | None:intergenic |
| CATCCTCGAGCATTGCCTCG+TGG | 0.673479 | 6.3:+15022824 | None:intergenic |
| TTATCCTGATTGCCACCAGG+AGG | 0.673801 | 6.3:-15022912 | MS.gene80889:CDS |
| TACACTTACTGCTGTCCACG+AGG | 0.675978 | 6.3:-15022839 | MS.gene80889:CDS |
| GTTTGAGTATCCCGTTACCG+AGG | 0.676627 | 6.3:-15022519 | MS.gene80889:CDS |
| GCAGTAAGTGTACGGCTACG+GGG | 0.682631 | 6.3:+15022850 | None:intergenic |
| TGATCTTTGATCCATCAACT+CGG | 0.685009 | 6.3:+15022761 | None:intergenic |
| CATGGATAACCACAGCCTTG+CGG | 0.691240 | 6.3:+15023583 | None:intergenic |
| TGGCCTAACAATCCTCCTGG+TGG | 0.708065 | 6.3:+15022900 | None:intergenic |
| AGATAGTTTCCTGTAAACAG+CGG | 0.719077 | 6.3:+15022556 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATTCGTTATTTAAGTTT+TGG | + | chr6.3:15023790-15023809 | None:intergenic | 20.0% |
| !!! | GATTTGAAATCAAAACATAT+TGG | + | chr6.3:15023360-15023379 | None:intergenic | 20.0% |
| !!! | TCATTTTAATTGAATTCTTG+TGG | - | chr6.3:15023813-15023832 | MS.gene80889:intron | 20.0% |
| ! | AATTAAGGATCAAAAGACAA+TGG | + | chr6.3:15023077-15023096 | None:intergenic | 25.0% |
| ! | AGTAACTTTCAGAAGTTATT+TGG | + | chr6.3:15023749-15023768 | None:intergenic | 25.0% |
| ! | ATGAAACATCATGCATATAA+TGG | + | chr6.3:15023493-15023512 | None:intergenic | 25.0% |
| ! | GTTAAACAAGGTTTCAATTA+AGG | + | chr6.3:15023092-15023111 | None:intergenic | 25.0% |
| !!! | AACTGGAATTTTGTTATGAT+TGG | - | chr6.3:15023161-15023180 | MS.gene80889:intron | 25.0% |
| !!! | CAGTTTTAAATCAAACTGTA+GGG | - | chr6.3:15023446-15023465 | MS.gene80889:intron | 25.0% |
| !!! | TAATTTGTTTATGCTCTTGT+TGG | - | chr6.3:15023218-15023237 | MS.gene80889:intron | 25.0% |
| !!! | TTAATTTTTGTTGTTGTTGC+AGG | - | chr6.3:15022670-15022689 | MS.gene80889:intron | 25.0% |
| AAACAATACCGAATACAAGT+TGG | - | chr6.3:15023874-15023893 | MS.gene80889:intron | 30.0% | |
| AAGAAAATCAGCAAGGATAA+AGG | - | chr6.3:15022529-15022548 | MS.gene80889:CDS | 30.0% | |
| AATGACTCTATACAGAACAA+AGG | + | chr6.3:15023004-15023023 | None:intergenic | 30.0% | |
| AATGTGATTGAGGGAAATTA+CGG | + | chr6.3:15023126-15023145 | None:intergenic | 30.0% | |
| ACATCATGCATATAATGGTA+TGG | + | chr6.3:15023488-15023507 | None:intergenic | 30.0% | |
| ATTGGAATTTCATTACGAAC+TGG | - | chr6.3:15023179-15023198 | MS.gene80889:intron | 30.0% | |
| GTGCTATAGTAAGTTAAACA+AGG | + | chr6.3:15023104-15023123 | None:intergenic | 30.0% | |
| TTGTTCTGTATAGAGTCATT+AGG | - | chr6.3:15023004-15023023 | MS.gene80889:intron | 30.0% | |
| TTTGGTTGATTGAACACAAA+AGG | + | chr6.3:15023772-15023791 | None:intergenic | 30.0% | |
| ! | TTAATTGATGCAGGTGTTTT+TGG | - | chr6.3:15023838-15023857 | MS.gene80889:intron | 30.0% |
| !!! | GCAGTTTTAAATCAAACTGT+AGG | - | chr6.3:15023445-15023464 | MS.gene80889:intron | 30.0% |
| AATCCCTTCCTCAATCTATA+TGG | + | chr6.3:15022907-15022926 | None:intergenic | 35.0% | |
| ACAGATTCCTCAAATTCAGT+TGG | + | chr6.3:15022562-15022581 | None:intergenic | 35.0% | |
| ACTGAATTTGAGGAATCTGT+TGG | - | chr6.3:15022562-15022581 | MS.gene80889:CDS | 35.0% | |
| AGATAGTTTCCTGTAAACAG+CGG | + | chr6.3:15023909-15023928 | None:intergenic | 35.0% | |
| ATCAAGGAAGAAAATCAGCA+AGG | - | chr6.3:15022522-15022541 | MS.gene80889:CDS | 35.0% | |
| ATCCCTTCCTCAATCTATAT+GGG | + | chr6.3:15022906-15022925 | None:intergenic | 35.0% | |
| ATTCCAGTTACAGTTACCAT+CGG | + | chr6.3:15023150-15023169 | None:intergenic | 35.0% | |
| GAATGTCTCCAACTTGTATT+CGG | + | chr6.3:15023885-15023904 | None:intergenic | 35.0% | |
| GATAACATCCTGCAAGTTAA+AGG | + | chr6.3:15023535-15023554 | None:intergenic | 35.0% | |
| TGATCTTTGATCCATCAACT+CGG | + | chr6.3:15023704-15023723 | None:intergenic | 35.0% | |
| TGATTTCAAATCTCAACCGT+TGG | - | chr6.3:15023368-15023387 | MS.gene80889:intron | 35.0% | |
| ! | TGATGGATCAAAGATCATGA+AGG | - | chr6.3:15023707-15023726 | MS.gene80889:intron | 35.0% |
| ! | TTGATTTTCTCCTCAGTATG+AGG | - | chr6.3:15023413-15023432 | MS.gene80889:intron | 35.0% |
| ! | TTTTGTCACACTACAGTTTC+TGG | - | chr6.3:15023028-15023047 | MS.gene80889:intron | 35.0% |
| !! | CTAATGAACCTTTAACTTGC+AGG | - | chr6.3:15023524-15023543 | MS.gene80889:CDS | 35.0% |
| !!! | CTTGTGGTTTTAATTGATGC+AGG | - | chr6.3:15023829-15023848 | MS.gene80889:intron | 35.0% |
| ATTGTTAGGCCACCAAAGAA+AGG | - | chr6.3:15023573-15023592 | MS.gene80889:CDS | 40.0% | |
| ATTTGAGGAATCTGTTGGAC+AGG | - | chr6.3:15022567-15022586 | MS.gene80889:CDS | 40.0% | |
| CTTCGAATAACCTCATACTG+AGG | + | chr6.3:15023426-15023445 | None:intergenic | 40.0% | |
| GAGCTCGAGAAGAAATTTAG+CGG | - | chr6.3:15022955-15022974 | MS.gene80889:intron | 40.0% | |
| GCTGTTTACAGGAAACTATC+TGG | - | chr6.3:15023908-15023927 | MS.gene80889:CDS | 40.0% | |
| GTCCCATATAGATTGAGGAA+GGG | - | chr6.3:15022901-15022920 | MS.gene80889:CDS | 40.0% | |
| TCAGCGAGAATTACTACCAA+CGG | + | chr6.3:15023387-15023406 | None:intergenic | 40.0% | |
| TCCATGTCCCATATAGATTG+AGG | - | chr6.3:15022896-15022915 | MS.gene80889:CDS | 40.0% | |
| TCCTCAATCTATATGGGACA+TGG | + | chr6.3:15022900-15022919 | None:intergenic | 40.0% | |
| TGTCCAACACAGTGCTTAAA+CGG | - | chr6.3:15023299-15023318 | MS.gene80889:intron | 40.0% | |
| TGTCCCATATAGATTGAGGA+AGG | - | chr6.3:15022900-15022919 | MS.gene80889:CDS | 40.0% | |
| TTCCAGTTACAGTTACCATC+GGG | + | chr6.3:15023149-15023168 | None:intergenic | 40.0% | |
| ! | AAATCCATGTCAGGCTTGTT+AGG | - | chr6.3:15022932-15022951 | MS.gene80889:intron | 40.0% |
| ! | CGGTATTGTTTCTCTCCTTT+GGG | + | chr6.3:15023865-15023884 | None:intergenic | 40.0% |
| ! | TAACCGTTTAAGCACTGTGT+TGG | + | chr6.3:15023305-15023324 | None:intergenic | 40.0% |
| ! | TCGGTATTGTTTCTCTCCTT+TGG | + | chr6.3:15023866-15023885 | None:intergenic | 40.0% |
| !! | AATCCATGTCAGGCTTGTTA+GGG | - | chr6.3:15022933-15022952 | MS.gene80889:intron | 40.0% |
| !! | ATCGACTTGGCTGTAGATTA+TGG | + | chr6.3:15022848-15022867 | None:intergenic | 40.0% |
| ACCATCGGGAATGTGATTGA+GGG | + | chr6.3:15023135-15023154 | None:intergenic | 45.0% | |
| AGACATTCTCCGCTGTTTAC+AGG | - | chr6.3:15023897-15023916 | MS.gene80889:CDS | 45.0% | |
| ATGTTATCCTGATTGCCACC+AGG | - | chr6.3:15023547-15023566 | MS.gene80889:CDS | 45.0% | |
| CGAGAAGAAATTTAGCGGCA+AGG | - | chr6.3:15022960-15022979 | MS.gene80889:intron | 45.0% | |
| GATTCCGCAAAATCCATGTC+AGG | - | chr6.3:15022923-15022942 | MS.gene80889:intron | 45.0% | |
| TACAGCCAAGTCGATGTTTC+TGG | - | chr6.3:15022853-15022872 | MS.gene80889:CDS | 45.0% | |
| TACCATCGGGAATGTGATTG+AGG | + | chr6.3:15023136-15023155 | None:intergenic | 45.0% | |
| TGCTGAGCCAACTGAATTTG+AGG | - | chr6.3:15022552-15022571 | MS.gene80889:CDS | 45.0% | |
| TTCCCGATGGTAACTGTAAC+TGG | - | chr6.3:15023144-15023163 | MS.gene80889:intron | 45.0% | |
| ! | CAAGCCTGACATGGATTTTG+CGG | + | chr6.3:15022930-15022949 | None:intergenic | 45.0% |
| !! | TGAGCTCACTTTTCAGCTCA+TGG | + | chr6.3:15022721-15022740 | None:intergenic | 45.0% |
| AGATTGTTGGCAAGCGCACT+AGG | - | chr6.3:15023676-15023695 | MS.gene80889:intron | 50.0% | |
| AGCAGTAAGTGTACGGCTAC+GGG | + | chr6.3:15023616-15023635 | None:intergenic | 50.0% | |
| AGTGCGCTTGCCAACAATCT+CGG | + | chr6.3:15023676-15023695 | None:intergenic | 50.0% | |
| CAGCAGTAAGTGTACGGCTA+CGG | + | chr6.3:15023617-15023636 | None:intergenic | 50.0% | |
| CATGGATAACCACAGCCTTG+CGG | + | chr6.3:15022882-15022901 | None:intergenic | 50.0% | |
| CGTGGACAGCAGTAAGTGTA+CGG | + | chr6.3:15023623-15023642 | None:intergenic | 50.0% | |
| GCACTGTGTTGGACATCAGA+AGG | + | chr6.3:15023294-15023313 | None:intergenic | 50.0% | |
| GTGTTACCTGCCGAGATTGT+TGG | - | chr6.3:15023663-15023682 | MS.gene80889:intron | 50.0% | |
| GTTTGAGTATCCCGTTACCG+AGG | - | chr6.3:15023943-15023962 | MS.gene80889:CDS | 50.0% | |
| TACACTTACTGCTGTCCACG+AGG | - | chr6.3:15023623-15023642 | MS.gene80889:intron | 50.0% | |
| TCCCTCAATCACATTCCCGA+TGG | - | chr6.3:15023131-15023150 | MS.gene80889:intron | 50.0% | |
| TGAGCAGCGGAACCTTTCTT+TGG | + | chr6.3:15023588-15023607 | None:intergenic | 50.0% | |
| TTATCCTGATTGCCACCAGG+AGG | - | chr6.3:15023550-15023569 | MS.gene80889:CDS | 50.0% | |
| TTGCCACCAGGAGGATTGTT+AGG | - | chr6.3:15023559-15023578 | MS.gene80889:CDS | 50.0% | |
| ! | GGTTGCCAGAAACATCGACT+TGG | + | chr6.3:15022861-15022880 | None:intergenic | 50.0% |
| !!! | GCAGGTGTTTTTGGACCCAA+AGG | - | chr6.3:15023847-15023866 | MS.gene80889:intron | 50.0% |
| CAATCCTCCTGGTGGCAATC+AGG | + | chr6.3:15023557-15023576 | None:intergenic | 55.0% | |
| CAGTAAGTGTACGGCTACGG+GGG | + | chr6.3:15023614-15023633 | None:intergenic | 55.0% | |
| GCAGCGGAACCTTTCTTTGG+TGG | + | chr6.3:15023585-15023604 | None:intergenic | 55.0% | |
| GCAGTAAGTGTACGGCTACG+GGG | + | chr6.3:15023615-15023634 | None:intergenic | 55.0% | |
| GCTCCCTAACAAGCCTGACA+TGG | + | chr6.3:15022939-15022958 | None:intergenic | 55.0% | |
| TGGCCTAACAATCCTCCTGG+TGG | + | chr6.3:15023565-15023584 | None:intergenic | 55.0% | |
| TGGTGGCCTAACAATCCTCC+TGG | + | chr6.3:15023568-15023587 | None:intergenic | 55.0% | |
| !! | CGATGTTTCTGGCAACCGCA+AGG | - | chr6.3:15022864-15022883 | MS.gene80889:CDS | 55.0% |
| !! | CGCACTAGGTACCGAGTTGA+TGG | - | chr6.3:15023690-15023709 | MS.gene80889:intron | 55.0% |
| CGCTTGCCAACAATCTCGGC+AGG | + | chr6.3:15023672-15023691 | None:intergenic | 60.0% | |
| TGTCCACGAGGCAATGCTCG+AGG | - | chr6.3:15023635-15023654 | MS.gene80889:intron | 60.0% | |
| TTCTGGCAACCGCAAGGCTG+TGG | - | chr6.3:15022870-15022889 | MS.gene80889:CDS | 60.0% | |
| ! | CATCCTCGAGCATTGCCTCG+TGG | + | chr6.3:15023641-15023660 | None:intergenic | 60.0% |
| !! | GCTACGGGGGCGCTGAGCAG+CGG | + | chr6.3:15023601-15023620 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 15022514 | 15023970 | 15022514 | ID=MS.gene80889 |
| chr6.3 | mRNA | 15022514 | 15023970 | 15022514 | ID=MS.gene80889.t1;Parent=MS.gene80889 |
| chr6.3 | exon | 15023896 | 15023970 | 15023896 | ID=MS.gene80889.t1.exon1;Parent=MS.gene80889.t1 |
| chr6.3 | CDS | 15023896 | 15023970 | 15023896 | ID=cds.MS.gene80889.t1;Parent=MS.gene80889.t1 |
| chr6.3 | exon | 15023719 | 15023792 | 15023719 | ID=MS.gene80889.t1.exon2;Parent=MS.gene80889.t1 |
| chr6.3 | CDS | 15023719 | 15023792 | 15023719 | ID=cds.MS.gene80889.t1;Parent=MS.gene80889.t1 |
| chr6.3 | exon | 15023503 | 15023626 | 15023503 | ID=MS.gene80889.t1.exon3;Parent=MS.gene80889.t1 |
| chr6.3 | CDS | 15023503 | 15023626 | 15023503 | ID=cds.MS.gene80889.t1;Parent=MS.gene80889.t1 |
| chr6.3 | exon | 15022756 | 15022938 | 15022756 | ID=MS.gene80889.t1.exon4;Parent=MS.gene80889.t1 |
| chr6.3 | CDS | 15022756 | 15022938 | 15022756 | ID=cds.MS.gene80889.t1;Parent=MS.gene80889.t1 |
| chr6.3 | exon | 15022514 | 15022633 | 15022514 | ID=MS.gene80889.t1.exon5;Parent=MS.gene80889.t1 |
| chr6.3 | CDS | 15022514 | 15022633 | 15022514 | ID=cds.MS.gene80889.t1;Parent=MS.gene80889.t1 |
| Gene Sequence |
| Protein sequence |
