Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28862.t1 | EXB94464.1 | 43.2 | 760 | 134 | 7 | 1 | 475 | 156 | 902 | 2.80E-161 | 578.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28862.t1 | P51567 | 87.9 | 224 | 27 | 0 | 1 | 224 | 159 | 382 | 1.5e-115 | 417.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28862.t1 | W9RJG0 | 43.2 | 760 | 134 | 7 | 1 | 475 | 156 | 902 | 2.0e-161 | 578.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene28862 | 0.834955 | 2.22E-56 | -1.69E-46 |
| MS.gene049378 | MS.gene28862 | 0.871164 | 8.42E-67 | -1.69E-46 |
| MS.gene04991 | MS.gene28862 | -0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene050105 | MS.gene28862 | 0.835932 | 1.26E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene28862 | 0.82101 | 5.07E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene28862 | 0.817561 | 3.09E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene28862 | 0.822949 | 1.80E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene28862 | 0.842899 | 1.95E-58 | -1.69E-46 |
| MS.gene050605 | MS.gene28862 | 0.823598 | 1.27E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene28862 | -0.839008 | 2.05E-57 | -1.69E-46 |
| MS.gene050680 | MS.gene28862 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene28862 | 0.813602 | 2.36E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene28862 | 0.804644 | 1.96E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene28862 | 0.805574 | 1.25E-49 | -1.69E-46 |
| MS.gene050826 | MS.gene28862 | 0.828091 | 1.09E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene28862 | 0.817764 | 2.78E-52 | -1.69E-46 |
| MS.gene051122 | MS.gene28862 | 0.852368 | 4.83E-61 | -1.69E-46 |
| MS.gene051210 | MS.gene28862 | 0.819059 | 1.42E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene28862 | 0.833476 | 5.22E-56 | -1.69E-46 |
| MS.gene051924 | MS.gene28862 | -0.809626 | 1.72E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene28862 | 0.822015 | 2.97E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene28862 | 0.821503 | 3.90E-53 | -1.69E-46 |
| MS.gene05216 | MS.gene28862 | 0.808904 | 2.46E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene28862 | 0.84118 | 5.56E-58 | -1.69E-46 |
| MS.gene052389 | MS.gene28862 | 0.82971 | 4.42E-55 | -1.69E-46 |
| MS.gene052426 | MS.gene28862 | 0.814725 | 1.33E-51 | -1.69E-46 |
| MS.gene052586 | MS.gene28862 | 0.806103 | 9.68E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene28862 | 0.833769 | 4.41E-56 | -1.69E-46 |
| MS.gene052675 | MS.gene28862 | 0.826681 | 2.37E-54 | -1.69E-46 |
| MS.gene052677 | MS.gene28862 | 0.839214 | 1.81E-57 | -1.69E-46 |
| MS.gene053166 | MS.gene28862 | 0.81581 | 7.64E-52 | -1.69E-46 |
| MS.gene053494 | MS.gene28862 | 0.830536 | 2.78E-55 | -1.69E-46 |
| MS.gene054236 | MS.gene28862 | 0.808159 | 3.55E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene28862 | -0.814686 | 1.36E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene28862 | 0.830376 | 3.04E-55 | -1.69E-46 |
| MS.gene054405 | MS.gene28862 | 0.814947 | 1.19E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene28862 | 0.805505 | 1.29E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene28862 | 0.835425 | 1.69E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene28862 | 0.846132 | 2.63E-59 | -1.69E-46 |
| MS.gene054826 | MS.gene28862 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene28862 | 0.820225 | 7.67E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene28862 | 0.827625 | 1.41E-54 | -1.69E-46 |
| MS.gene055225 | MS.gene28862 | 0.803549 | 3.31E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene28862 | 0.917087 | 8.13E-86 | -1.69E-46 |
| MS.gene055926 | MS.gene28862 | 0.818164 | 2.26E-52 | -1.69E-46 |
| MS.gene05595 | MS.gene28862 | 0.835733 | 1.41E-56 | -1.69E-46 |
| MS.gene056480 | MS.gene28862 | 0.82825 | 9.98E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene28862 | 0.81711 | 3.91E-52 | -1.69E-46 |
| MS.gene056873 | MS.gene28862 | 0.813418 | 2.59E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene28862 | 0.821824 | 3.29E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene28862 | 0.810501 | 1.12E-50 | -1.69E-46 |
| MS.gene057156 | MS.gene28862 | -0.819998 | 8.65E-53 | -1.69E-46 |
| MS.gene057194 | MS.gene28862 | 0.819717 | 1.00E-52 | -1.69E-46 |
| MS.gene05761 | MS.gene28862 | 0.851083 | 1.12E-60 | -1.69E-46 |
| MS.gene058081 | MS.gene28862 | 0.832716 | 8.06E-56 | -1.69E-46 |
| MS.gene058146 | MS.gene28862 | 0.840366 | 9.08E-58 | -1.69E-46 |
| MS.gene058223 | MS.gene28862 | -0.819972 | 8.77E-53 | -1.69E-46 |
| MS.gene058435 | MS.gene28862 | 0.801913 | 7.19E-49 | -1.69E-46 |
| MS.gene058503 | MS.gene28862 | 0.834034 | 3.79E-56 | -1.69E-46 |
| MS.gene05872 | MS.gene28862 | 0.810923 | 9.05E-51 | -1.69E-46 |
| MS.gene059161 | MS.gene28862 | 0.827464 | 1.54E-54 | -1.69E-46 |
| MS.gene059162 | MS.gene28862 | 0.801743 | 7.80E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene28862 | 0.803843 | 2.87E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene28862 | 0.859933 | 2.93E-63 | -1.69E-46 |
| MS.gene059952 | MS.gene28862 | 0.846074 | 2.73E-59 | -1.69E-46 |
| MS.gene060010 | MS.gene28862 | 0.805634 | 1.21E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene28862 | 0.842243 | 2.91E-58 | -1.69E-46 |
| MS.gene060322 | MS.gene28862 | 0.808075 | 3.70E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene28862 | 0.815783 | 7.75E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene28862 | 0.839709 | 1.35E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene28862 | 0.838376 | 2.98E-57 | -1.69E-46 |
| MS.gene060802 | MS.gene28862 | 0.874534 | 6.26E-68 | -1.69E-46 |
| MS.gene060803 | MS.gene28862 | 0.839078 | 1.96E-57 | -1.69E-46 |
| MS.gene060850 | MS.gene28862 | 0.83487 | 2.33E-56 | -1.69E-46 |
| MS.gene060851 | MS.gene28862 | 0.849859 | 2.47E-60 | -1.69E-46 |
| MS.gene060852 | MS.gene28862 | 0.848236 | 6.97E-60 | -1.69E-46 |
| MS.gene060940 | MS.gene28862 | 0.80076 | 1.24E-48 | -1.69E-46 |
| MS.gene060942 | MS.gene28862 | 0.810151 | 1.33E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene28862 | 0.834526 | 2.85E-56 | -1.69E-46 |
| MS.gene061002 | MS.gene28862 | 0.812981 | 3.22E-51 | -1.69E-46 |
| MS.gene06121 | MS.gene28862 | 0.804049 | 2.60E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 100 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTCTTCAAATCTTTC+AGG | 0.142225 | 3.1:-62863915 | None:intergenic |
| GCTATAAAAGTTATTGATTT+TGG | 0.156084 | 3.1:+62859283 | MS.gene28862:CDS |
| TGTCCTTTAAAATCAATTTC+TGG | 0.180373 | 3.1:-62863936 | None:intergenic |
| TTATCTGATGTGAGGGTTAA+AGG | 0.183111 | 3.1:+62863801 | MS.gene28862:CDS |
| TTCAGAGGGACCCTGAATTT+TGG | 0.193353 | 3.1:+62863871 | MS.gene28862:CDS |
| TCTGGCTTGTTCCAAAATTC+AGG | 0.215173 | 3.1:-62863882 | None:intergenic |
| TTGTATCAACACGTCATTAT+AGG | 0.269120 | 3.1:+62859341 | MS.gene28862:CDS |
| TGCTTGCTAATCTTCTCTAT+TGG | 0.281732 | 3.1:+62864039 | MS.gene28862:CDS |
| ATTCACAAACACTCTTGTTT+TGG | 0.319277 | 3.1:-62863838 | None:intergenic |
| GTGTTGATACAATGTAATTT+TGG | 0.326386 | 3.1:-62859330 | None:intergenic |
| CAATTTCAGGACATGTTTGC+TGG | 0.329945 | 3.1:+62863558 | MS.gene28862:intron |
| CAACAGGTGTTTGAGAAACT+TGG | 0.334035 | 3.1:+62858634 | MS.gene28862:intron |
| CCTGGAATTTCATTTGGACT+TGG | 0.334625 | 3.1:+62864002 | MS.gene28862:CDS |
| GGATGTCCTGGAATTTCATT+TGG | 0.335119 | 3.1:+62863996 | MS.gene28862:CDS |
| CGAGATTGGAAGACAACTAT+TGG | 0.340182 | 3.1:+62858720 | MS.gene28862:CDS |
| GGCCAGAGGGTGCAAATTCC+AGG | 0.350876 | 3.1:+62859910 | MS.gene28862:CDS |
| CTTGCAGTTGTGTGCAAATA+CGG | 0.358647 | 3.1:+62858494 | None:intergenic |
| ATTGATCTTGTTCGCGAGAT+TGG | 0.361635 | 3.1:+62858706 | MS.gene28862:CDS |
| GAACCTACACTACACTCATT+TGG | 0.367436 | 3.1:+62864161 | MS.gene28862:CDS |
| TATCTGATGTGAGGGTTAAA+GGG | 0.386496 | 3.1:+62863802 | MS.gene28862:CDS |
| TTTCAGGCTTCAGATCAGTA+TGG | 0.389467 | 3.1:-62858915 | None:intergenic |
| TGTATCAACACGTCATTATA+GGG | 0.391748 | 3.1:+62859342 | MS.gene28862:CDS |
| CAATACATTCCATTTGGTGC+TGG | 0.396750 | 3.1:+62863966 | MS.gene28862:CDS |
| GGAATCAATATTCACATGAT+AGG | 0.397867 | 3.1:-62864200 | None:intergenic |
| TGCATATGTGCACCAATCTT+AGG | 0.398364 | 3.1:-62864077 | None:intergenic |
| AAATTCCAGGGAGAGTATTA+AGG | 0.404205 | 3.1:+62859923 | MS.gene28862:CDS |
| GGAGCTATCCATGTGATGTT+TGG | 0.409101 | 3.1:+62859538 | MS.gene28862:CDS |
| GATTTGCAATACATTCCATT+TGG | 0.411444 | 3.1:+62863960 | MS.gene28862:CDS |
| ATCTTCTCTATTGGTTTGAC+TGG | 0.411542 | 3.1:+62864048 | MS.gene28862:CDS |
| TTCAATATCTGCTGCGGTAA+CGG | 0.419875 | 3.1:-62859750 | None:intergenic |
| TCCCTGGAATTTGCACCCTC+TGG | 0.421349 | 3.1:-62859912 | None:intergenic |
| CTTTCAGGAATGTACTCATC+TGG | 0.426495 | 3.1:-62863900 | None:intergenic |
| CCAATCAGATAAGGACTTTG+TGG | 0.426679 | 3.1:+62862981 | MS.gene28862:CDS |
| GACTGGAAGCTGCCTAAGAT+TGG | 0.427640 | 3.1:+62864065 | MS.gene28862:CDS |
| TTTAGAGCATCTTGCCATGA+TGG | 0.438127 | 3.1:+62859713 | MS.gene28862:CDS |
| GTAAAAGGAGCAAGGTGCTC+TGG | 0.446255 | 3.1:-62859239 | None:intergenic |
| CCTCTTCTCCCAGCACCAAA+TGG | 0.448093 | 3.1:-62863975 | None:intergenic |
| CAGGACATGTTTGCTGGAGG+AGG | 0.449764 | 3.1:+62863564 | MS.gene28862:intron |
| AACAAAAGTACCTTGTAGTC+GGG | 0.450784 | 3.1:-62858973 | None:intergenic |
| CCACAAAGTCCTTATCTGAT+TGG | 0.457087 | 3.1:-62862981 | None:intergenic |
| ATCTCGCGAACAAGATCAAT+GGG | 0.463178 | 3.1:-62858703 | None:intergenic |
| CGAAGAAAATCGTATAAGCT+TGG | 0.464676 | 3.1:-62858658 | None:intergenic |
| CCATGTGATGTTTGGAGTGT+GGG | 0.465909 | 3.1:+62859546 | MS.gene28862:CDS |
| AAGAAATAAGAAAAGTTGTT+GGG | 0.468506 | 3.1:+62863664 | MS.gene28862:CDS |
| CCAAGTCCAAATGAAATTCC+AGG | 0.468686 | 3.1:-62864002 | None:intergenic |
| GAAGAAATAAGAAAAGTTGT+TGG | 0.479829 | 3.1:+62863663 | MS.gene28862:CDS |
| AATACATTCCATTTGGTGCT+GGG | 0.481481 | 3.1:+62863967 | MS.gene28862:CDS |
| TAACATCAAAGCAATCCTAA+TGG | 0.484328 | 3.1:+62863059 | MS.gene28862:CDS |
| CTGGCTTGTTCCAAAATTCA+GGG | 0.488788 | 3.1:-62863881 | None:intergenic |
| GCCATGATGGAGAGGGTGCT+TGG | 0.489778 | 3.1:+62859726 | MS.gene28862:CDS |
| AATCTCGCGAACAAGATCAA+TGG | 0.492792 | 3.1:-62858704 | None:intergenic |
| AATATTCACATGATAGGTAA+TGG | 0.501708 | 3.1:-62864194 | None:intergenic |
| CTAGGTATCAAAAGAGGAGC+AGG | 0.506899 | 3.1:-62863771 | None:intergenic |
| AATGAAGCTTCCTCGACTGC+AGG | 0.507820 | 3.1:+62859950 | MS.gene28862:CDS |
| AGGGCACCTGAAGTTATCCT+TGG | 0.519240 | 3.1:+62859361 | MS.gene28862:CDS |
| ATAGACATGAGTGAGATTCA+TGG | 0.519688 | 3.1:+62864104 | MS.gene28862:CDS |
| CCATTTGGTGCTGGGAGAAG+AGG | 0.523010 | 3.1:+62863975 | MS.gene28862:CDS |
| TACAGCCTTAATACTCTCCC+TGG | 0.524396 | 3.1:-62859928 | None:intergenic |
| GTTGTGTGCAAATACGGAAC+TGG | 0.532397 | 3.1:+62858500 | None:intergenic |
| TGTTGGGTATAAATCAAAAG+TGG | 0.533027 | 3.1:+62863680 | MS.gene28862:CDS |
| TACATACCAAGGATAACTTC+AGG | 0.537818 | 3.1:-62859367 | None:intergenic |
| TCTTAAAATCCCCGACTACA+AGG | 0.538794 | 3.1:+62858963 | MS.gene28862:CDS |
| TAGACATGAGTGAGATTCAT+GGG | 0.540967 | 3.1:+62864105 | MS.gene28862:CDS |
| GGGGAGACTGGACTGGCCAG+AGG | 0.544892 | 3.1:+62859896 | MS.gene28862:CDS |
| GGGAGACTGGACTGGCCAGA+GGG | 0.546729 | 3.1:+62859897 | MS.gene28862:CDS |
| GCTGGGAGAAGAGGATGTCC+TGG | 0.548707 | 3.1:+62863984 | MS.gene28862:CDS |
| TCCATGTGATGTTTGGAGTG+TGG | 0.550376 | 3.1:+62859545 | MS.gene28862:CDS |
| CAAGAGTGTTTGTGAATGCA+TGG | 0.555139 | 3.1:+62863844 | MS.gene28862:CDS |
| TGAAGGTGGCCAATCAGATA+AGG | 0.557711 | 3.1:+62862972 | MS.gene28862:CDS |
| ATTCTACTTCAAGTTCAAGA+TGG | 0.558795 | 3.1:+62863006 | MS.gene28862:CDS |
| CAACAAAAGTACCTTGTAGT+CGG | 0.565973 | 3.1:-62858974 | None:intergenic |
| ACCAAGCACCCTCTCCATCA+TGG | 0.566879 | 3.1:-62859727 | None:intergenic |
| CCCACACTCCAAACATCACA+TGG | 0.572703 | 3.1:-62859546 | None:intergenic |
| GAGAAACTTTATCTGATGTG+AGG | 0.576275 | 3.1:+62863793 | MS.gene28862:CDS |
| CTTCTTCAACACTTCTCGAG+TGG | 0.577953 | 3.1:+62863592 | MS.gene28862:CDS |
| GTTTCTCTAGGTATCAAAAG+AGG | 0.578497 | 3.1:-62863777 | None:intergenic |
| ACATCAGATAAAGTTTCTCT+AGG | 0.582784 | 3.1:-62863789 | None:intergenic |
| TGCTGAGAAGTATGTCCGAA+GGG | 0.586380 | 3.1:+62859875 | MS.gene28862:CDS |
| AGCATCTTGCCATGATGGAG+AGG | 0.588758 | 3.1:+62859718 | MS.gene28862:CDS |
| GATCCAAATGAGTGTAGTGT+AGG | 0.594701 | 3.1:-62864164 | None:intergenic |
| AGGATGAAGAAGAGTGAAGG+TGG | 0.602040 | 3.1:+62862958 | MS.gene28862:CDS |
| ATGCTGAGAAGTATGTCCGA+AGG | 0.603891 | 3.1:+62859874 | MS.gene28862:CDS |
| GCATCTTGCCATGATGGAGA+GGG | 0.605002 | 3.1:+62859719 | MS.gene28862:CDS |
| AGAAACTTTATCTGATGTGA+GGG | 0.606388 | 3.1:+62863794 | MS.gene28862:CDS |
| GCCAGAGGGTGCAAATTCCA+GGG | 0.606405 | 3.1:+62859911 | MS.gene28862:CDS |
| TGAATGCATGGACAATTCAG+AGG | 0.606917 | 3.1:+62863856 | MS.gene28862:CDS |
| TGAAAACAAACCTGCAGTCG+AGG | 0.611159 | 3.1:-62859960 | None:intergenic |
| AGTGTAGGTTCAAGATGAAG+TGG | 0.613728 | 3.1:-62864149 | None:intergenic |
| TTTCAGGACATGTTTGCTGG+AGG | 0.614507 | 3.1:+62863561 | MS.gene28862:intron |
| AAGAGGATGAAGAAGAGTGA+AGG | 0.614640 | 3.1:+62862955 | MS.gene28862:CDS |
| AGGTGATTGCAGATCACAAG+AGG | 0.623811 | 3.1:+62862938 | MS.gene28862:intron |
| GGACATTTGCTGAACTCATG+AGG | 0.623927 | 3.1:+62863613 | MS.gene28862:CDS |
| TTGATGTTATCATTTGTGAG+TGG | 0.638647 | 3.1:-62863045 | None:intergenic |
| GGTATCAAAAGAGGAGCAGG+TGG | 0.645016 | 3.1:-62863768 | None:intergenic |
| CTGAGAAGTATGTCCGAAGG+GGG | 0.654634 | 3.1:+62859877 | MS.gene28862:CDS |
| ACTCTCTTCAATATCTGCTG+CGG | 0.655396 | 3.1:-62859756 | None:intergenic |
| GGACATACTTCTCAGCATGT+CGG | 0.655396 | 3.1:-62859869 | None:intergenic |
| GAATGCATGGACAATTCAGA+GGG | 0.664025 | 3.1:+62863857 | MS.gene28862:CDS |
| ACAAAAGTACCTTGTAGTCG+GGG | 0.673356 | 3.1:-62858972 | None:intergenic |
| GCTGAGAAGTATGTCCGAAG+GGG | 0.682906 | 3.1:+62859876 | MS.gene28862:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATTTTATAATAAATA+AGG | - | chr3.1:62860401-62860420 | None:intergenic | 0.0% |
| !! | ATTGTTGAAAAATAATTAAT+AGG | - | chr3.1:62861388-62861407 | None:intergenic | 10.0% |
| !! | TTTATTTATACCATATATAA+AGG | + | chr3.1:62861722-62861741 | MS.gene28862:intron | 10.0% |
| !!! | AATATAAGAAAATTTGTTTA+AGG | - | chr3.1:62861792-62861811 | None:intergenic | 10.0% |
| !!! | ATATAAGAAAATTTGTTTAA+GGG | - | chr3.1:62861791-62861810 | None:intergenic | 10.0% |
| !!! | ATTTTATAATAAATAAGGAT+TGG | - | chr3.1:62860396-62860415 | None:intergenic | 10.0% |
| !!! | TTTTATAATAAATAAGGATT+GGG | - | chr3.1:62860395-62860414 | None:intergenic | 10.0% |
| !! | AAATAAAAATTGTTGAACAA+GGG | + | chr3.1:62861049-62861068 | MS.gene28862:intron | 15.0% |
| !! | CTTATATTAATATTTATTGC+TGG | + | chr3.1:62861804-62861823 | MS.gene28862:intron | 15.0% |
| !! | GTATAATTAAGATAATCAAA+AGG | - | chr3.1:62861769-62861788 | None:intergenic | 15.0% |
| !! | TTATGTGATAATAAACAAAA+GGG | + | chr3.1:62860985-62861004 | MS.gene28862:intron | 15.0% |
| !!! | AAATAACATCTTATATTTTC+AGG | - | chr3.1:62861159-62861178 | None:intergenic | 15.0% |
| !!! | GATACATATTTTTTCAAATT+TGG | - | chr3.1:62862042-62862061 | None:intergenic | 15.0% |
| !!! | TAAATAGTTGATTTTTGTAA+TGG | + | chr3.1:62859498-62859517 | MS.gene28862:intron | 15.0% |
| !!! | TTTTATTTACTCATAGATTT+TGG | + | chr3.1:62859009-62859028 | MS.gene28862:intron | 15.0% |
| !! | AAGAAATAAGAAAAGTTGTT+GGG | + | chr3.1:62863664-62863683 | MS.gene28862:CDS | 20.0% |
| !! | AATAGCGAAAAAAATAATAG+AGG | - | chr3.1:62863095-62863114 | None:intergenic | 20.0% |
| !! | AATCTATGAGTAAATAAAAC+AGG | - | chr3.1:62859008-62859027 | None:intergenic | 20.0% |
| !! | ATGTATTACATAACTTTGTA+TGG | - | chr3.1:62860705-62860724 | None:intergenic | 20.0% |
| !! | ATTGAGATTATCAAGATTAA+CGG | - | chr3.1:62861656-62861675 | None:intergenic | 20.0% |
| !! | CAAATAAAAATTGTTGAACA+AGG | + | chr3.1:62861048-62861067 | MS.gene28862:intron | 20.0% |
| !! | GATATAAATTTGTAATCCAA+TGG | + | chr3.1:62862016-62862035 | MS.gene28862:intron | 20.0% |
| !! | GTTATGTGATAATAAACAAA+AGG | + | chr3.1:62860984-62861003 | MS.gene28862:intron | 20.0% |
| !! | TAAACAAAATGTTACATTGT+CGG | + | chr3.1:62861270-62861289 | MS.gene28862:intron | 20.0% |
| !! | TCAAATAAACTAAATCAAAC+AGG | - | chr3.1:62863267-62863286 | None:intergenic | 20.0% |
| !! | TGTTGAGATAATAAACAAAA+AGG | + | chr3.1:62861075-62861094 | MS.gene28862:intron | 20.0% |
| !!! | AGTTAAGAAAGACAAATTTT+TGG | + | chr3.1:62860597-62860616 | MS.gene28862:intron | 20.0% |
| !!! | ATAAACTATTTTCATGACAA+GGG | - | chr3.1:62863445-62863464 | None:intergenic | 20.0% |
| !!! | ATGGTTTTTGAATATTTCTT+TGG | - | chr3.1:62862422-62862441 | None:intergenic | 20.0% |
| !!! | ATTATTTTCATAAACTATCC+TGG | - | chr3.1:62863393-62863412 | None:intergenic | 20.0% |
| !!! | ATTTTAGACATAATCATACT+AGG | + | chr3.1:62859033-62859052 | MS.gene28862:intron | 20.0% |
| !!! | GATTTTTGTAATGGTTTTTT+AGG | + | chr3.1:62859507-62859526 | MS.gene28862:intron | 20.0% |
| !!! | GCTATAAAAGTTATTGATTT+TGG | + | chr3.1:62859283-62859302 | MS.gene28862:CDS | 20.0% |
| !!! | TTGTTTTTTTTGTCAAAGAA+GGG | + | chr3.1:62858831-62858850 | MS.gene28862:intron | 20.0% |
| ! | AAGCCAATTTAAACACAATA+CGG | - | chr3.1:62859647-62859666 | None:intergenic | 25.0% |
| ! | ACAAAAATCAACTATTTAGC+TGG | - | chr3.1:62859496-62859515 | None:intergenic | 25.0% |
| ! | AGACTATCATCTAATTGATT+TGG | - | chr3.1:62860624-62860643 | None:intergenic | 25.0% |
| ! | AGAGATTGTTGATACTTTAA+AGG | + | chr3.1:62862624-62862643 | MS.gene28862:intron | 25.0% |
| ! | ATAACATGAAAAAGAAACAC+TGG | - | chr3.1:62859843-62859862 | None:intergenic | 25.0% |
| ! | ATATCATACTAGCGTAAAAA+TGG | - | chr3.1:62862001-62862020 | None:intergenic | 25.0% |
| ! | ATCAAAATGAATTATCAAGC+AGG | + | chr3.1:62860746-62860765 | MS.gene28862:intron | 25.0% |
| ! | ATTAGATTCTTTCTTTGATC+AGG | + | chr3.1:62862918-62862937 | MS.gene28862:intron | 25.0% |
| ! | CACATAAAATAAGCTATTAG+CGG | + | chr3.1:62860570-62860589 | MS.gene28862:intron | 25.0% |
| ! | CTAAATCAAACAGGAAAAAT+TGG | - | chr3.1:62863258-62863277 | None:intergenic | 25.0% |
| ! | GAAGAAATAAGAAAAGTTGT+TGG | + | chr3.1:62863663-62863682 | MS.gene28862:CDS | 25.0% |
| ! | GATTGTTCATCTTATATGAT+TGG | - | chr3.1:62861507-62861526 | None:intergenic | 25.0% |
| ! | GATTTAGATTGAGCATAATT+CGG | + | chr3.1:62863143-62863162 | MS.gene28862:intron | 25.0% |
| ! | TAGTGATATAGTCTAAATAG+TGG | - | chr3.1:62863234-62863253 | None:intergenic | 25.0% |
| ! | TCATAATTTACAAACGTTAC+CGG | + | chr3.1:62861949-62861968 | MS.gene28862:intron | 25.0% |
| ! | TGCTGTATCTTTATAAATCA+TGG | + | chr3.1:62859457-62859476 | MS.gene28862:intron | 25.0% |
| ! | TTATAAATGTATGTGTAACG+AGG | + | chr3.1:62861459-62861478 | MS.gene28862:intron | 25.0% |
| !! | AGATCTTATACATCTTTTAC+AGG | + | chr3.1:62860120-62860139 | MS.gene28862:intron | 25.0% |
| !! | ATCTTATACATCTTTTACAG+GGG | + | chr3.1:62860122-62860141 | MS.gene28862:intron | 25.0% |
| !! | ATTTCCATTTTCACAATTTC+AGG | + | chr3.1:62863545-62863564 | MS.gene28862:intron | 25.0% |
| !! | CATAAACTATTTTCATGACA+AGG | - | chr3.1:62863446-62863465 | None:intergenic | 25.0% |
| !! | GATCTTATACATCTTTTACA+GGG | + | chr3.1:62860121-62860140 | MS.gene28862:intron | 25.0% |
| !! | TGAATACTTCTGAAAAATGT+CGG | + | chr3.1:62859607-62859626 | MS.gene28862:intron | 25.0% |
| !!! | ACTTTCTTTTAAGTGTATGA+AGG | - | chr3.1:62861311-62861330 | None:intergenic | 25.0% |
| !!! | ATTTTTTCAAATTTGGCCAT+TGG | - | chr3.1:62862035-62862054 | None:intergenic | 25.0% |
| !!! | CAACCAGAAATTGATTTTAA+AGG | + | chr3.1:62863933-62863952 | MS.gene28862:CDS | 25.0% |
| !!! | CAACTTTTCTTATTTCTTCT+TGG | - | chr3.1:62863662-62863681 | None:intergenic | 25.0% |
| !!! | GACAATGTAACATTTTGTTT+AGG | - | chr3.1:62861271-62861290 | None:intergenic | 25.0% |
| !!! | GTGTTGATACAATGTAATTT+TGG | - | chr3.1:62859333-62859352 | None:intergenic | 25.0% |
| !!! | GTTGTTTTTTTTGTCAAAGA+AGG | + | chr3.1:62858830-62858849 | MS.gene28862:intron | 25.0% |
| !!! | TAATAGCTTATTTTATGTGC+TGG | - | chr3.1:62860569-62860588 | None:intergenic | 25.0% |
| !!! | TGTCCTTTAAAATCAATTTC+TGG | - | chr3.1:62863939-62863958 | None:intergenic | 25.0% |
| !!! | TTATGCTCTTGTTTTAAGTT+GGG | - | chr3.1:62863522-62863541 | None:intergenic | 25.0% |
| !!! | TTTATGCTCTTGTTTTAAGT+TGG | - | chr3.1:62863523-62863542 | None:intergenic | 25.0% |
| AAAGTTCAAGAAACACATAC+CGG | - | chr3.1:62860538-62860557 | None:intergenic | 30.0% | |
| AACCAATGTTCTATGAGTAA+TGG | - | chr3.1:62861240-62861259 | None:intergenic | 30.0% | |
| AACCATTACTCATAGAACAT+TGG | + | chr3.1:62861235-62861254 | MS.gene28862:intron | 30.0% | |
| AATAGGAACTCATTAGTCAA+TGG | - | chr3.1:62861371-62861390 | None:intergenic | 30.0% | |
| ACATCAGATAAAGTTTCTCT+AGG | - | chr3.1:62863792-62863811 | None:intergenic | 30.0% | |
| ACCTAATTGACTATATCCAA+AGG | + | chr3.1:62860654-62860673 | MS.gene28862:intron | 30.0% | |
| AGAAACTTTATCTGATGTGA+GGG | + | chr3.1:62863794-62863813 | MS.gene28862:CDS | 30.0% | |
| ATCATAACCAACAATTCACT+TGG | - | chr3.1:62859183-62859202 | None:intergenic | 30.0% | |
| ATGTCCTGAAATTGTGAAAA+TGG | - | chr3.1:62863552-62863571 | None:intergenic | 30.0% | |
| ATTCTTTAACCATTGTCCTA+AGG | - | chr3.1:62861025-62861044 | None:intergenic | 30.0% | |
| CAACAATGTCGATATATACA+TGG | + | chr3.1:62861401-62861420 | MS.gene28862:intron | 30.0% | |
| CCACGTATTTCCTTTATATA+TGG | - | chr3.1:62861735-62861754 | None:intergenic | 30.0% | |
| CCATATATAAAGGAAATACG+TGG | + | chr3.1:62861732-62861751 | MS.gene28862:intron | 30.0% | |
| CCTCAAATAACATAGTTTCA+AGG | + | chr3.1:62862722-62862741 | MS.gene28862:intron | 30.0% | |
| GATTTGCAATACATTCCATT+TGG | + | chr3.1:62863960-62863979 | MS.gene28862:CDS | 30.0% | |
| GTATGAACAAGATTAACTAC+AGG | - | chr3.1:62859431-62859450 | None:intergenic | 30.0% | |
| TAACATCAAAGCAATCCTAA+TGG | + | chr3.1:62863059-62863078 | MS.gene28862:CDS | 30.0% | |
| TACATGCAGCTGAATAATTA+TGG | - | chr3.1:62860495-62860514 | None:intergenic | 30.0% | |
| TACCTTCATGACAATAGTTA+AGG | + | chr3.1:62861111-62861130 | MS.gene28862:intron | 30.0% | |
| TAGCTGTAACTCTTTCAAAT+GGG | - | chr3.1:62860162-62860181 | None:intergenic | 30.0% | |
| TATAGTTCGTATACATACCA+AGG | - | chr3.1:62859381-62859400 | None:intergenic | 30.0% | |
| TCAAATGACTCAAGAAAGAA+TGG | + | chr3.1:62862108-62862127 | MS.gene28862:intron | 30.0% | |
| TCCTTTGGATATAGTCAATT+AGG | - | chr3.1:62860658-62860677 | None:intergenic | 30.0% | |
| TGAATTCAAATGATTGCAAC+AGG | + | chr3.1:62858618-62858637 | MS.gene28862:intron | 30.0% | |
| TGGAATGTATAGAACAAATG+TGG | + | chr3.1:62860450-62860469 | MS.gene28862:intron | 30.0% | |
| TGGCCAAATATCTGAATTTA+AGG | + | chr3.1:62862882-62862901 | MS.gene28862:intron | 30.0% | |
| TGTATCAACACGTCATTATA+GGG | + | chr3.1:62859342-62859361 | MS.gene28862:CDS | 30.0% | |
| TGTCCGTATTGTGTTTAAAT+TGG | + | chr3.1:62859641-62859660 | MS.gene28862:intron | 30.0% | |
| TGTTGGGTATAAATCAAAAG+TGG | + | chr3.1:62863680-62863699 | MS.gene28862:CDS | 30.0% | |
| TTCCTTAACTATTGTCATGA+AGG | - | chr3.1:62861116-62861135 | None:intergenic | 30.0% | |
| TTCTACTGATGAAACAACAA+TGG | - | chr3.1:62862395-62862414 | None:intergenic | 30.0% | |
| TTGAGTAAGTAATTTACCGT+GGG | + | chr3.1:62859778-62859797 | MS.gene28862:intron | 30.0% | |
| TTGATGTTATCATTTGTGAG+TGG | - | chr3.1:62863048-62863067 | None:intergenic | 30.0% | |
| TTGTATCAACACGTCATTAT+AGG | + | chr3.1:62859341-62859360 | MS.gene28862:CDS | 30.0% | |
| TTTGTTCTATACATTCCACT+CGG | - | chr3.1:62860448-62860467 | None:intergenic | 30.0% | |
| ! | AACTTTTATAGCACTTGACT+TGG | - | chr3.1:62859275-62859294 | None:intergenic | 30.0% |
| ! | ACTTTTATAGCACTTGACTT+GGG | - | chr3.1:62859274-62859293 | None:intergenic | 30.0% |
| ! | ATAAAGGAAATACGTGGTTT+TGG | + | chr3.1:62861738-62861757 | MS.gene28862:intron | 30.0% |
| ! | ATTCTACTTCAAGTTCAAGA+TGG | + | chr3.1:62863006-62863025 | MS.gene28862:CDS | 30.0% |
| ! | CAAGCTTATACGATTTTCTT+CGG | + | chr3.1:62858659-62858678 | MS.gene28862:CDS | 30.0% |
| ! | CATGCACTCTCTAAAAAATA+TGG | + | chr3.1:62862334-62862353 | MS.gene28862:intron | 30.0% |
| ! | CCTTGAAACTATGTTATTTG+AGG | - | chr3.1:62862725-62862744 | None:intergenic | 30.0% |
| ! | GAAACAAGAAGAATGTTTTC+AGG | - | chr3.1:62858934-62858953 | None:intergenic | 30.0% |
| ! | TAAAGGAAATACGTGGTTTT+GGG | + | chr3.1:62861739-62861758 | MS.gene28862:intron | 30.0% |
| ! | TGGCCTTAAATTCAGATATT+TGG | - | chr3.1:62862888-62862907 | None:intergenic | 30.0% |
| ! | TTTTACAAAAAACAACCGAG+TGG | + | chr3.1:62860430-62860449 | MS.gene28862:intron | 30.0% |
| !! | ATTCACAAACACTCTTGTTT+TGG | - | chr3.1:62863841-62863860 | None:intergenic | 30.0% |
| !! | CTTATTTTCATAAACTCTCC+AGG | + | chr3.1:62863372-62863391 | MS.gene28862:intron | 30.0% |
| !!! | AGATGATTAGCCATTTTTAG+AGG | + | chr3.1:62860226-62860245 | MS.gene28862:intron | 30.0% |
| !!! | ATTTTGGTTTTCTCGTTCAT+AGG | - | chr3.1:62859317-62859336 | None:intergenic | 30.0% |
| !!! | CATATTTTTTAGAGAGTGCA+TGG | - | chr3.1:62862336-62862355 | None:intergenic | 30.0% |
| !!! | GTAATGGTTTTTTAGGACTT+GGG | + | chr3.1:62859514-62859533 | MS.gene28862:intron | 30.0% |
| !!! | TGTAATGGTTTTTTAGGACT+TGG | + | chr3.1:62859513-62859532 | MS.gene28862:intron | 30.0% |
| !!! | TTTTTTTTGTCAAAGAAGGG+TGG | + | chr3.1:62858834-62858853 | MS.gene28862:intron | 30.0% |
| AAAGTGCAAATGTGAGTGTA+AGG | + | chr3.1:62860274-62860293 | MS.gene28862:intron | 35.0% | |
| AAATGGCTAATCATCTCCTA+AGG | - | chr3.1:62860222-62860241 | None:intergenic | 35.0% | |
| AACGTGAAGAGCAAAGATAA+CGG | + | chr3.1:62860871-62860890 | MS.gene28862:intron | 35.0% | |
| ACAATACGGACAACAAAAAC+TGG | - | chr3.1:62859633-62859652 | None:intergenic | 35.0% | |
| ACAATCATAGAAAGTTCCCA+CGG | - | chr3.1:62859797-62859816 | None:intergenic | 35.0% | |
| AGAATCTAATGCACAGAAAG+TGG | - | chr3.1:62862908-62862927 | None:intergenic | 35.0% | |
| AGACATAATCATACTAGGTG+AGG | + | chr3.1:62859038-62859057 | MS.gene28862:intron | 35.0% | |
| AGGTGATCTCTCATAAAGAA+TGG | - | chr3.1:62860202-62860221 | None:intergenic | 35.0% | |
| ATAAAGAGTGAGTAGATACG+TGG | - | chr3.1:62861443-62861462 | None:intergenic | 35.0% | |
| ATAGACATGAGTGAGATTCA+TGG | + | chr3.1:62864104-62864123 | MS.gene28862:CDS | 35.0% | |
| ATAGTTTCAAGGTGTGTTCT+TGG | + | chr3.1:62862733-62862752 | MS.gene28862:intron | 35.0% | |
| CGAAGAAAATCGTATAAGCT+TGG | - | chr3.1:62858661-62858680 | None:intergenic | 35.0% | |
| CTAATTCCACTTCACAGAAT+CGG | + | chr3.1:62863168-62863187 | MS.gene28862:intron | 35.0% | |
| CTAGCGTAAAAATGGACAAT+TGG | - | chr3.1:62861993-62862012 | None:intergenic | 35.0% | |
| CTAGCTATTGTATTGTCCTT+TGG | - | chr3.1:62860673-62860692 | None:intergenic | 35.0% | |
| CTAGCTGTAACTCTTTCAAA+TGG | - | chr3.1:62860163-62860182 | None:intergenic | 35.0% | |
| CTAGTTTCATCATCATGAGA+GGG | - | chr3.1:62862360-62862379 | None:intergenic | 35.0% | |
| GAGAAACTTTATCTGATGTG+AGG | + | chr3.1:62863793-62863812 | MS.gene28862:CDS | 35.0% | |
| GCTAGTGAAGCAAAAGATAA+TGG | - | chr3.1:62862197-62862216 | None:intergenic | 35.0% | |
| GCTGCAAATATCATTCTCTA+TGG | + | chr3.1:62862475-62862494 | MS.gene28862:intron | 35.0% | |
| GGTTGTTCTTCAAATCTTTC+AGG | - | chr3.1:62863918-62863937 | None:intergenic | 35.0% | |
| GTTGAGTAAGTAATTTACCG+TGG | + | chr3.1:62859777-62859796 | MS.gene28862:intron | 35.0% | |
| GTTTCTCTAGGTATCAAAAG+AGG | - | chr3.1:62863780-62863799 | None:intergenic | 35.0% | |
| TAAGTTGCCAAGTGAATTGT+TGG | + | chr3.1:62859173-62859192 | MS.gene28862:intron | 35.0% | |
| TACATACCAAGGATAACTTC+AGG | - | chr3.1:62859370-62859389 | None:intergenic | 35.0% | |
| TAGACATGAGTGAGATTCAT+GGG | + | chr3.1:62864105-62864124 | MS.gene28862:CDS | 35.0% | |
| TATCTGATGTGAGGGTTAAA+GGG | + | chr3.1:62863802-62863821 | MS.gene28862:CDS | 35.0% | |
| TCAGTTCTTTACAACAGCAA+TGG | + | chr3.1:62860008-62860027 | MS.gene28862:intron | 35.0% | |
| TCAGTTTAAGCACAAACACA+AGG | - | chr3.1:62862219-62862238 | None:intergenic | 35.0% | |
| TCTTTATGAGAGATCACCTT+AGG | + | chr3.1:62860203-62860222 | MS.gene28862:intron | 35.0% | |
| TGAAGTAGTGTTTGACCATA+TGG | + | chr3.1:62860837-62860856 | MS.gene28862:intron | 35.0% | |
| TGGTGAAGATTGCCAATTAT+TGG | - | chr3.1:62862286-62862305 | None:intergenic | 35.0% | |
| TGTTGGAGAAAACAACATCA+TGG | - | chr3.1:62862441-62862460 | None:intergenic | 35.0% | |
| TTAACCATTGTCCTAAGGAT+TGG | - | chr3.1:62861020-62861039 | None:intergenic | 35.0% | |
| TTAGCGATAGCATCTATGAT+GGG | + | chr3.1:62859133-62859152 | MS.gene28862:intron | 35.0% | |
| TTATCTGATGTGAGGGTTAA+AGG | + | chr3.1:62863801-62863820 | MS.gene28862:CDS | 35.0% | |
| TTCCCCAATATACGTGATTT+GGG | + | chr3.1:62858581-62858600 | MS.gene28862:intron | 35.0% | |
| TTCTATGATTGTCACTGTAC+AGG | + | chr3.1:62859805-62859824 | MS.gene28862:intron | 35.0% | |
| TTTCCCCAATATACGTGATT+TGG | + | chr3.1:62858580-62858599 | MS.gene28862:intron | 35.0% | |
| ! | ACTCTTTTGTAAAAGGAGCA+AGG | - | chr3.1:62859250-62859269 | None:intergenic | 35.0% |
| ! | AGTCGTTAGTTTGAAAGAGT+AGG | + | chr3.1:62861328-62861347 | MS.gene28862:intron | 35.0% |
| ! | ATCTTTTTCCTTCATTGGGT+TGG | + | chr3.1:62862845-62862864 | MS.gene28862:intron | 35.0% |
| ! | CAAAAGTATGATACACCAGA+TGG | + | chr3.1:62862757-62862776 | MS.gene28862:intron | 35.0% |
| ! | CACTTTTGACAGATTCAACT+TGG | - | chr3.1:62860260-62860279 | None:intergenic | 35.0% |
| ! | GGAGATCTTTTTCCTTCATT+GGG | + | chr3.1:62862841-62862860 | MS.gene28862:intron | 35.0% |
| ! | TGCTACTTCTTCTTCTCTTA+TGG | - | chr3.1:62862605-62862624 | None:intergenic | 35.0% |
| ! | TGCTTGCTAATCTTCTCTAT+TGG | + | chr3.1:62864039-62864058 | MS.gene28862:CDS | 35.0% |
| ! | TGGAGATCTTTTTCCTTCAT+TGG | + | chr3.1:62862840-62862859 | MS.gene28862:intron | 35.0% |
| ! | TTGCCAATTATTGGTAGCTT+TGG | - | chr3.1:62862277-62862296 | None:intergenic | 35.0% |
| !! | AAATTCCAGGGAGAGTATTA+AGG | + | chr3.1:62859923-62859942 | MS.gene28862:CDS | 35.0% |
| !! | AACAAAAGTACCTTGTAGTC+GGG | - | chr3.1:62858976-62858995 | None:intergenic | 35.0% |
| !! | AACATTTGCTTTAGAGCTAG+TGG | - | chr3.1:62862145-62862164 | None:intergenic | 35.0% |
| !! | AATACATTCCATTTGGTGCT+GGG | + | chr3.1:62863967-62863986 | MS.gene28862:CDS | 35.0% |
| !! | ATCTTCTCTATTGGTTTGAC+TGG | + | chr3.1:62864048-62864067 | MS.gene28862:CDS | 35.0% |
| !! | CAACAAAAGTACCTTGTAGT+CGG | - | chr3.1:62858977-62858996 | None:intergenic | 35.0% |
| !! | GCTTGCACAAAAGTTGTTTT+CGG | + | chr3.1:62863349-62863368 | MS.gene28862:intron | 35.0% |
| !! | TGTTGTTTCATCAGTAGAAG+TGG | + | chr3.1:62862396-62862415 | MS.gene28862:intron | 35.0% |
| !!! | ACAAACACTCTTGTTTTGGA+TGG | - | chr3.1:62863837-62863856 | None:intergenic | 35.0% |
| !!! | GCATTCTGCTCTTTTTTTTC+CGG | - | chr3.1:62861971-62861990 | None:intergenic | 35.0% |
| !!! | TTTTTTAGAGAGTGCATGGA+AGG | - | chr3.1:62862332-62862351 | None:intergenic | 35.0% |
| AAATAAGGATTGGGTCAGAC+AGG | - | chr3.1:62860386-62860405 | None:intergenic | 40.0% | |
| AACCCCCAAATCACGTATAT+TGG | - | chr3.1:62858588-62858607 | None:intergenic | 40.0% | |
| AAGAGGATGAAGAAGAGTGA+AGG | + | chr3.1:62862955-62862974 | MS.gene28862:CDS | 40.0% | |
| AATCTCGCGAACAAGATCAA+TGG | - | chr3.1:62858707-62858726 | None:intergenic | 40.0% | |
| AATGCAGCATGTCGATCATT+CGG | + | chr3.1:62860093-62860112 | MS.gene28862:intron | 40.0% | |
| ACAGATTCAACTTGGACACT+AGG | - | chr3.1:62860252-62860271 | None:intergenic | 40.0% | |
| ACCCCCAAATCACGTATATT+GGG | - | chr3.1:62858587-62858606 | None:intergenic | 40.0% | |
| ACTCTCTTCAATATCTGCTG+CGG | - | chr3.1:62859759-62859778 | None:intergenic | 40.0% | |
| ACTGATGAAACAACAATGGC+TGG | - | chr3.1:62862391-62862410 | None:intergenic | 40.0% | |
| AGTGTAGGTTCAAGATGAAG+TGG | - | chr3.1:62864152-62864171 | None:intergenic | 40.0% | |
| ATCTCGCGAACAAGATCAAT+GGG | - | chr3.1:62858706-62858725 | None:intergenic | 40.0% | |
| ATGATATTTGCAGCCGTGTT+CGG | - | chr3.1:62862469-62862488 | None:intergenic | 40.0% | |
| ATGTCAATCCAACCCAATGA+AGG | - | chr3.1:62862856-62862875 | None:intergenic | 40.0% | |
| ATTGATCTTGTTCGCGAGAT+TGG | + | chr3.1:62858706-62858725 | MS.gene28862:CDS | 40.0% | |
| ATTGGCAATCTTCACCAACT+TGG | + | chr3.1:62862289-62862308 | MS.gene28862:intron | 40.0% | |
| CAAATGTGAGTGTAAGGAGA+AGG | + | chr3.1:62860280-62860299 | MS.gene28862:intron | 40.0% | |
| CAACAGGTGTTTGAGAAACT+TGG | + | chr3.1:62858634-62858653 | MS.gene28862:intron | 40.0% | |
| CAATTAGCAGCTTTCAGTGT+TGG | + | chr3.1:62862820-62862839 | MS.gene28862:intron | 40.0% | |
| CAATTTCAGGACATGTTTGC+TGG | + | chr3.1:62863558-62863577 | MS.gene28862:intron | 40.0% | |
| CCAAGTCCAAATGAAATTCC+AGG | - | chr3.1:62864005-62864024 | None:intergenic | 40.0% | |
| CCAATCAGATAAGGACTTTG+TGG | + | chr3.1:62862981-62863000 | MS.gene28862:CDS | 40.0% | |
| CCACAAAGTCCTTATCTGAT+TGG | - | chr3.1:62862984-62863003 | None:intergenic | 40.0% | |
| CCACCAAAGCTACCAATAAT+TGG | + | chr3.1:62862271-62862290 | MS.gene28862:intron | 40.0% | |
| CCTAGTTTCATCATCATGAG+AGG | - | chr3.1:62862361-62862380 | None:intergenic | 40.0% | |
| CCTGGAATTTCATTTGGACT+TGG | + | chr3.1:62864002-62864021 | MS.gene28862:CDS | 40.0% | |
| CGAGATTGGAAGACAACTAT+TGG | + | chr3.1:62858720-62858739 | MS.gene28862:CDS | 40.0% | |
| CGATTCTGTGAAGTGGAATT+AGG | - | chr3.1:62863170-62863189 | None:intergenic | 40.0% | |
| CTAACCAATCCTTAGGACAA+TGG | + | chr3.1:62861013-62861032 | MS.gene28862:intron | 40.0% | |
| CTTAGCGATAGCATCTATGA+TGG | + | chr3.1:62859132-62859151 | MS.gene28862:intron | 40.0% | |
| CTTTCAGGAATGTACTCATC+TGG | - | chr3.1:62863903-62863922 | None:intergenic | 40.0% | |
| GAACCTACACTACACTCATT+TGG | + | chr3.1:62864161-62864180 | MS.gene28862:CDS | 40.0% | |
| GAATGCATGGACAATTCAGA+GGG | + | chr3.1:62863857-62863876 | MS.gene28862:CDS | 40.0% | |
| GACCATTACCTATCATGTGA+AGG | + | chr3.1:62864192-62864211 | MS.gene28862:CDS | 40.0% | |
| GATCCAAATGAGTGTAGTGT+AGG | - | chr3.1:62864167-62864186 | None:intergenic | 40.0% | |
| GATCGACATGCTGCATTATA+AGG | - | chr3.1:62860090-62860109 | None:intergenic | 40.0% | |
| GCTTGTATGCTTCTACTTCA+GGG | + | chr3.1:62859663-62859682 | MS.gene28862:intron | 40.0% | |
| GCTTGTCTGATAAGTGAAGA+TGG | + | chr3.1:62860333-62860352 | MS.gene28862:intron | 40.0% | |
| GGATGTCCTGGAATTTCATT+TGG | + | chr3.1:62863996-62864015 | MS.gene28862:CDS | 40.0% | |
| GGTTGGATTGACATTCTTAC+TGG | + | chr3.1:62862862-62862881 | MS.gene28862:intron | 40.0% | |
| GTCAAACACTACTTCAGCAA+GGG | - | chr3.1:62860833-62860852 | None:intergenic | 40.0% | |
| GTGGTTGTCAAAGAAATGAC+TGG | - | chr3.1:62861577-62861596 | None:intergenic | 40.0% | |
| TATGATACACCAGATGGTAG+TGG | + | chr3.1:62862763-62862782 | MS.gene28862:intron | 40.0% | |
| TCCCCAATATACGTGATTTG+GGG | + | chr3.1:62858582-62858601 | MS.gene28862:intron | 40.0% | |
| TCCTCATGGAAAGTTTGAAC+CGG | + | chr3.1:62860516-62860535 | MS.gene28862:intron | 40.0% | |
| TCCTTAATCAACGCTAGACA+TGG | - | chr3.1:62861612-62861631 | None:intergenic | 40.0% | |
| TCTTAAAATCCCCGACTACA+AGG | + | chr3.1:62858963-62858982 | MS.gene28862:CDS | 40.0% | |
| TGAATGCATGGACAATTCAG+AGG | + | chr3.1:62863856-62863875 | MS.gene28862:CDS | 40.0% | |
| TGATATCTGACATCCAGTGT+TGG | + | chr3.1:62859199-62859218 | MS.gene28862:intron | 40.0% | |
| TGCATATGTGCACCAATCTT+AGG | - | chr3.1:62864080-62864099 | None:intergenic | 40.0% | |
| TTAATCAACGCTAGACATGG+AGG | - | chr3.1:62861609-62861628 | None:intergenic | 40.0% | |
| TTCAATATCTGCTGCGGTAA+CGG | - | chr3.1:62859753-62859772 | None:intergenic | 40.0% | |
| TTTCAGGCTTCAGATCAGTA+TGG | - | chr3.1:62858918-62858937 | None:intergenic | 40.0% | |
| ! | ACTCTGTTGATTACCAACAC+TGG | - | chr3.1:62859215-62859234 | None:intergenic | 40.0% |
| ! | AGAGGAAGAAGCATACCATT+AGG | - | chr3.1:62863077-62863096 | None:intergenic | 40.0% |
| ! | CCTCTCATGATGATGAAACT+AGG | + | chr3.1:62862358-62862377 | MS.gene28862:intron | 40.0% |
| ! | CTTGGGCACTCTTTTGTAAA+AGG | - | chr3.1:62859257-62859276 | None:intergenic | 40.0% |
| ! | TACAAACCGATTCTGTGAAG+TGG | - | chr3.1:62863177-62863196 | None:intergenic | 40.0% |
| ! | TTTAGAGCATCTTGCCATGA+TGG | + | chr3.1:62859713-62859732 | MS.gene28862:CDS | 40.0% |
| !! | ACAAAAGTACCTTGTAGTCG+GGG | - | chr3.1:62858975-62858994 | None:intergenic | 40.0% |
| !! | CAAGAGTGTTTGTGAATGCA+TGG | + | chr3.1:62863844-62863863 | MS.gene28862:CDS | 40.0% |
| !! | CAATACATTCCATTTGGTGC+TGG | + | chr3.1:62863966-62863985 | MS.gene28862:CDS | 40.0% |
| !! | CCAATTATTGGTAGCTTTGG+TGG | - | chr3.1:62862274-62862293 | None:intergenic | 40.0% |
| !! | CTGGCTTGTTCCAAAATTCA+GGG | - | chr3.1:62863884-62863903 | None:intergenic | 40.0% |
| !! | TCCATGTCTAGCGTTGATTA+AGG | + | chr3.1:62861608-62861627 | MS.gene28862:intron | 40.0% |
| !! | TCTGGCTTGTTCCAAAATTC+AGG | - | chr3.1:62863885-62863904 | None:intergenic | 40.0% |
| !!! | ATGGTTTTTTAGGACTTGGG+TGG | + | chr3.1:62859517-62859536 | MS.gene28862:intron | 40.0% |
| !!! | TGCAGGTTTGTTTTCAAGTC+TGG | + | chr3.1:62859967-62859986 | MS.gene28862:intron | 40.0% |
| AGGATGAAGAAGAGTGAAGG+TGG | + | chr3.1:62862958-62862977 | MS.gene28862:CDS | 45.0% | |
| AGGTGATTGCAGATCACAAG+AGG | + | chr3.1:62862938-62862957 | MS.gene28862:intron | 45.0% | |
| CCCCCAAATCACGTATATTG+GGG | - | chr3.1:62858586-62858605 | None:intergenic | 45.0% | |
| CGTTGCAATCGTTGTCCATA+TGG | - | chr3.1:62860855-62860874 | None:intergenic | 45.0% | |
| CTAGACATGGAGGTCGTTAA+AGG | - | chr3.1:62861599-62861618 | None:intergenic | 45.0% | |
| CTAGGTATCAAAAGAGGAGC+AGG | - | chr3.1:62863774-62863793 | None:intergenic | 45.0% | |
| CTTCTTCAACACTTCTCGAG+TGG | + | chr3.1:62863592-62863611 | MS.gene28862:CDS | 45.0% | |
| GGACATACTTCTCAGCATGT+CGG | - | chr3.1:62859872-62859891 | None:intergenic | 45.0% | |
| GGAGCTATCCATGTGATGTT+TGG | + | chr3.1:62859538-62859557 | MS.gene28862:CDS | 45.0% | |
| GGCTTGTATGCTTCTACTTC+AGG | + | chr3.1:62859662-62859681 | MS.gene28862:intron | 45.0% | |
| GGTCAAACACTACTTCAGCA+AGG | - | chr3.1:62860834-62860853 | None:intergenic | 45.0% | |
| GGTCTTGCTAACCAATCCTT+AGG | + | chr3.1:62861006-62861025 | MS.gene28862:intron | 45.0% | |
| TACAGCCTTAATACTCTCCC+TGG | - | chr3.1:62859931-62859950 | None:intergenic | 45.0% | |
| TCAGCTGCATGTATTCCTCA+TGG | + | chr3.1:62860502-62860521 | MS.gene28862:intron | 45.0% | |
| TGAAAACAAACCTGCAGTCG+AGG | - | chr3.1:62859963-62859982 | None:intergenic | 45.0% | |
| TGAAGGTGGCCAATCAGATA+AGG | + | chr3.1:62862972-62862991 | MS.gene28862:CDS | 45.0% | |
| TGTCTCCACTCTTCTCCATA+GGG | - | chr3.1:62862523-62862542 | None:intergenic | 45.0% | |
| ! | ACCGGTTCAAACTTTCCATG+AGG | - | chr3.1:62860520-62860539 | None:intergenic | 45.0% |
| ! | ATGCTGAGAAGTATGTCCGA+AGG | + | chr3.1:62859874-62859893 | MS.gene28862:CDS | 45.0% |
| ! | CCATGTGATGTTTGGAGTGT+GGG | + | chr3.1:62859546-62859565 | MS.gene28862:CDS | 45.0% |
| ! | CCCCAATATACGTGATTTGG+GGG | + | chr3.1:62858583-62858602 | MS.gene28862:intron | 45.0% |
| ! | GGACACTAGGCCTCTAAAAA+TGG | - | chr3.1:62860239-62860258 | None:intergenic | 45.0% |
| ! | GGACATTTGCTGAACTCATG+AGG | + | chr3.1:62863613-62863632 | MS.gene28862:CDS | 45.0% |
| ! | TAGAGAGTGCATGGAAGGAT+TGG | - | chr3.1:62862327-62862346 | None:intergenic | 45.0% |
| ! | TCCATGTGATGTTTGGAGTG+TGG | + | chr3.1:62859545-62859564 | MS.gene28862:CDS | 45.0% |
| ! | TGATTTGGGGGTTAAGACGT+GGG | + | chr3.1:62858595-62858614 | MS.gene28862:intron | 45.0% |
| ! | TGCTGAGAAGTATGTCCGAA+GGG | + | chr3.1:62859875-62859894 | MS.gene28862:CDS | 45.0% |
| ! | TTCAGAGGGACCCTGAATTT+TGG | + | chr3.1:62863871-62863890 | MS.gene28862:CDS | 45.0% |
| ! | TTTCAGGACATGTTTGCTGG+AGG | + | chr3.1:62863561-62863580 | MS.gene28862:intron | 45.0% |
| !! | ATTGGTAGCTTTGGTGGTGA+AGG | - | chr3.1:62862268-62862287 | None:intergenic | 45.0% |
| !!! | AATAACATATAAAATAATTT+TGG | + | chr3.1:62861673-62861692 | MS.gene28862:intron | 5.0% |
| AATGAAGCTTCCTCGACTGC+AGG | + | chr3.1:62859950-62859969 | MS.gene28862:CDS | 50.0% | |
| ATATTTGCAGCCGTGTTCGG+AGG | - | chr3.1:62862466-62862485 | None:intergenic | 50.0% | |
| CCAAAGCTACCACTACCATC+TGG | - | chr3.1:62862775-62862794 | None:intergenic | 50.0% | |
| CCCACACTCCAAACATCACA+TGG | - | chr3.1:62859549-62859568 | None:intergenic | 50.0% | |
| CTGTCTCCACTCTTCTCCAT+AGG | - | chr3.1:62862524-62862543 | None:intergenic | 50.0% | |
| GACATGGAGGTCGTTAAAGG+TGG | - | chr3.1:62861596-62861615 | None:intergenic | 50.0% | |
| GACTGGAAGCTGCCTAAGAT+TGG | + | chr3.1:62864065-62864084 | MS.gene28862:CDS | 50.0% | |
| GAGAAGAGTGGAGACAGAGA+AGG | + | chr3.1:62862527-62862546 | MS.gene28862:intron | 50.0% | |
| GGTATCAAAAGAGGAGCAGG+TGG | - | chr3.1:62863771-62863790 | None:intergenic | 50.0% | |
| GTGCGCGACTATGTCTAGTT+TGG | - | chr3.1:62863498-62863517 | None:intergenic | 50.0% | |
| TAGCACCCTATGGAGAAGAG+TGG | + | chr3.1:62862515-62862534 | MS.gene28862:intron | 50.0% | |
| ! | AGCATCTTGCCATGATGGAG+AGG | + | chr3.1:62859718-62859737 | MS.gene28862:CDS | 50.0% |
| ! | AGGGCACCTGAAGTTATCCT+TGG | + | chr3.1:62859361-62859380 | MS.gene28862:CDS | 50.0% |
| ! | AGTGCATGGAAGGATTGGTG+TGG | - | chr3.1:62862322-62862341 | None:intergenic | 50.0% |
| ! | CTGAGAAGTATGTCCGAAGG+GGG | + | chr3.1:62859877-62859896 | MS.gene28862:CDS | 50.0% |
| ! | GCATCTTGCCATGATGGAGA+GGG | + | chr3.1:62859719-62859738 | MS.gene28862:CDS | 50.0% |
| ! | GCTGAGAAGTATGTCCGAAG+GGG | + | chr3.1:62859876-62859895 | MS.gene28862:CDS | 50.0% |
| ! | GTAAAAGGAGCAAGGTGCTC+TGG | - | chr3.1:62859242-62859261 | None:intergenic | 50.0% |
| ! | GTGATTTGGGGGTTAAGACG+TGG | + | chr3.1:62858594-62858613 | MS.gene28862:intron | 50.0% |
| !! | CCAGATGGTAGTGGTAGCTT+TGG | + | chr3.1:62862772-62862791 | MS.gene28862:intron | 50.0% |
| ACCAAGCACCCTCTCCATCA+TGG | - | chr3.1:62859730-62859749 | None:intergenic | 55.0% | |
| AGGATTGGGTCAGACAGGCT+TGG | - | chr3.1:62860381-62860400 | None:intergenic | 55.0% | |
| ATTGGGTCAGACAGGCTTGG+AGG | - | chr3.1:62860378-62860397 | None:intergenic | 55.0% | |
| CAGCATGTCGATCATTCGGC+TGG | + | chr3.1:62860097-62860116 | MS.gene28862:intron | 55.0% | |
| CCTCTTCTCCCAGCACCAAA+TGG | - | chr3.1:62863978-62863997 | None:intergenic | 55.0% | |
| CTCCAACAAGCCTCCGAACA+CGG | + | chr3.1:62862453-62862472 | MS.gene28862:intron | 55.0% | |
| TCCCTGGAATTTGCACCCTC+TGG | - | chr3.1:62859915-62859934 | None:intergenic | 55.0% | |
| TTGGGTCAGACAGGCTTGGA+GGG | - | chr3.1:62860377-62860396 | None:intergenic | 55.0% | |
| ! | CAGGACATGTTTGCTGGAGG+AGG | + | chr3.1:62863564-62863583 | MS.gene28862:intron | 55.0% |
| ! | GACGTCGCTTTAGCACCCTA+TGG | + | chr3.1:62862505-62862524 | MS.gene28862:intron | 55.0% |
| ! | GCCAGAGGGTGCAAATTCCA+GGG | + | chr3.1:62859911-62859930 | MS.gene28862:CDS | 55.0% |
| ! | GGTGTGGTAGTGTGCCAAGT+TGG | - | chr3.1:62862306-62862325 | None:intergenic | 55.0% |
| !! | CCATTTGGTGCTGGGAGAAG+AGG | + | chr3.1:62863975-62863994 | MS.gene28862:CDS | 55.0% |
| !! | GGTAGCTTTGGTGGTGAAGG+AGG | - | chr3.1:62862265-62862284 | None:intergenic | 55.0% |
| AGCCGTGTTCGGAGGCTTGT+TGG | - | chr3.1:62862458-62862477 | None:intergenic | 60.0% | |
| GCTGGGAGAAGAGGATGTCC+TGG | + | chr3.1:62863984-62864003 | MS.gene28862:CDS | 60.0% | |
| GTATGTCCGAAGGGGGAGAC+TGG | + | chr3.1:62859884-62859903 | MS.gene28862:CDS | 60.0% | |
| TCAGACAGGCTTGGAGGGGA+AGG | - | chr3.1:62860372-62860391 | None:intergenic | 60.0% | |
| TGGGTCAGACAGGCTTGGAG+GGG | - | chr3.1:62860376-62860395 | None:intergenic | 60.0% | |
| ! | GGCCAGAGGGTGCAAATTCC+AGG | + | chr3.1:62859910-62859929 | MS.gene28862:CDS | 60.0% |
| !! | GCCATGATGGAGAGGGTGCT+TGG | + | chr3.1:62859726-62859745 | MS.gene28862:CDS | 60.0% |
| GCCAGTCCAGTCTCCCCCTT+CGG | - | chr3.1:62859893-62859912 | None:intergenic | 65.0% | |
| TCCGAAGGGGGAGACTGGAC+TGG | + | chr3.1:62859889-62859908 | MS.gene28862:CDS | 65.0% | |
| !! | GGGAGACTGGACTGGCCAGA+GGG | + | chr3.1:62859897-62859916 | MS.gene28862:CDS | 65.0% |
| !! | GGGGAGACTGGACTGGCCAG+AGG | + | chr3.1:62859896-62859915 | MS.gene28862:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62858501 | 62864211 | 62858501 | ID=MS.gene28862 |
| chr3.1 | mRNA | 62858501 | 62864211 | 62858501 | ID=MS.gene28862.t1;Parent=MS.gene28862 |
| chr3.1 | exon | 62858501 | 62858549 | 62858501 | ID=MS.gene28862.t1.exon1;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62858501 | 62858549 | 62858501 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| chr3.1 | exon | 62858640 | 62858754 | 62858640 | ID=MS.gene28862.t1.exon2;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62858640 | 62858754 | 62858640 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| chr3.1 | exon | 62858893 | 62858984 | 62858893 | ID=MS.gene28862.t1.exon3;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62858893 | 62858984 | 62858893 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| chr3.1 | exon | 62859232 | 62859382 | 62859232 | ID=MS.gene28862.t1.exon4;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62859232 | 62859382 | 62859232 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| chr3.1 | exon | 62859529 | 62859593 | 62859529 | ID=MS.gene28862.t1.exon5;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62859529 | 62859593 | 62859529 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| chr3.1 | exon | 62859684 | 62859781 | 62859684 | ID=MS.gene28862.t1.exon6;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62859684 | 62859781 | 62859684 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| chr3.1 | exon | 62859869 | 62859971 | 62859869 | ID=MS.gene28862.t1.exon7;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62859869 | 62859971 | 62859869 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| chr3.1 | exon | 62862940 | 62863080 | 62862940 | ID=MS.gene28862.t1.exon8;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62862940 | 62863080 | 62862940 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| chr3.1 | exon | 62863567 | 62864211 | 62863567 | ID=MS.gene28862.t1.exon9;Parent=MS.gene28862.t1 |
| chr3.1 | CDS | 62863567 | 62864211 | 62863567 | ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1 |
| Gene Sequence |
| Protein sequence |
