AlfalfaGEDB | MS.gene28862

M. sativa cultivar XinJiangDaYe / MS.gene28862

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005506 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016491 GO:0016705 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0020037 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28862.t1	EXB94464.1	43.2	760	134	7	1	475	156	902	2.80E-161	578.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28862.t1	P51567	87.9	224	27	0	1	224	159	382	1.5e-115	417.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28862.t1	W9RJG0	43.2	760	134	7	1	475	156	902	2.0e-161	578.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene28862	0.834955	2.22E-56	-1.69E-46
MS.gene049378	MS.gene28862	0.871164	8.42E-67	-1.69E-46
MS.gene04991	MS.gene28862	-0.801672	8.06E-49	-1.69E-46
MS.gene050105	MS.gene28862	0.835932	1.26E-56	-1.69E-46
MS.gene050226	MS.gene28862	0.82101	5.07E-53	-1.69E-46
MS.gene050227	MS.gene28862	0.817561	3.09E-52	-1.69E-46
MS.gene050228	MS.gene28862	0.822949	1.80E-53	-1.69E-46
MS.gene050442	MS.gene28862	0.842899	1.95E-58	-1.69E-46
MS.gene050605	MS.gene28862	0.823598	1.27E-53	-1.69E-46
MS.gene050623	MS.gene28862	-0.839008	2.05E-57	-1.69E-46

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 100 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCCAGGGAGAGTATTA+AGG	0.404205	3.1:+62859923	MS.gene28862:CDS
AACAAAAGTACCTTGTAGTC+GGG	0.450784	3.1:-62858973	None:intergenic
AAGAAATAAGAAAAGTTGTT+GGG	0.468506	3.1:+62863664	MS.gene28862:CDS
AAGAGGATGAAGAAGAGTGA+AGG	0.614640	3.1:+62862955	MS.gene28862:CDS
AATACATTCCATTTGGTGCT+GGG	0.481481	3.1:+62863967	MS.gene28862:CDS
AATATTCACATGATAGGTAA+TGG	0.501708	3.1:-62864194	None:intergenic
AATCTCGCGAACAAGATCAA+TGG	0.492792	3.1:-62858704	None:intergenic
AATGAAGCTTCCTCGACTGC+AGG	0.507820	3.1:+62859950	MS.gene28862:CDS
ACAAAAGTACCTTGTAGTCG+GGG	0.673356	3.1:-62858972	None:intergenic
ACATCAGATAAAGTTTCTCT+AGG	0.582784	3.1:-62863789	None:intergenic

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTCAAGAAACACATAC+CGG	-	chr3.1:62860538-62860557	None:intergenic	30.0%
AACCAATGTTCTATGAGTAA+TGG	-	chr3.1:62861240-62861259	None:intergenic	30.0%
AACCATTACTCATAGAACAT+TGG	+	chr3.1:62861235-62861254	MS.gene28862:intron	30.0%
AATAGGAACTCATTAGTCAA+TGG	-	chr3.1:62861371-62861390	None:intergenic	30.0%
ACATCAGATAAAGTTTCTCT+AGG	-	chr3.1:62863792-62863811	None:intergenic	30.0%
ACCTAATTGACTATATCCAA+AGG	+	chr3.1:62860654-62860673	MS.gene28862:intron	30.0%
AGAAACTTTATCTGATGTGA+GGG	+	chr3.1:62863794-62863813	MS.gene28862:CDS	30.0%
ATCATAACCAACAATTCACT+TGG	-	chr3.1:62859183-62859202	None:intergenic	30.0%
ATGTCCTGAAATTGTGAAAA+TGG	-	chr3.1:62863552-62863571	None:intergenic	30.0%
ATTCTTTAACCATTGTCCTA+AGG	-	chr3.1:62861025-62861044	None:intergenic	30.0%

Showing 1 to 10 of 325 entries

Previous1 2 3 4 5…33Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	62858501	62864211	62858501	ID=MS.gene28862
chr3.1	mRNA	62858501	62864211	62858501	ID=MS.gene28862.t1;Parent=MS.gene28862
chr3.1	exon	62858501	62858549	62858501	ID=MS.gene28862.t1.exon1;Parent=MS.gene28862.t1
chr3.1	CDS	62858501	62858549	62858501	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1
chr3.1	exon	62858640	62858754	62858640	ID=MS.gene28862.t1.exon2;Parent=MS.gene28862.t1
chr3.1	CDS	62858640	62858754	62858640	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1
chr3.1	exon	62858893	62858984	62858893	ID=MS.gene28862.t1.exon3;Parent=MS.gene28862.t1
chr3.1	CDS	62858893	62858984	62858893	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1
chr3.1	exon	62859232	62859382	62859232	ID=MS.gene28862.t1.exon4;Parent=MS.gene28862.t1
chr3.1	CDS	62859232	62859382	62859232	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1
chr3.1	exon	62859529	62859593	62859529	ID=MS.gene28862.t1.exon5;Parent=MS.gene28862.t1
chr3.1	CDS	62859529	62859593	62859529	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1
chr3.1	exon	62859684	62859781	62859684	ID=MS.gene28862.t1.exon6;Parent=MS.gene28862.t1
chr3.1	CDS	62859684	62859781	62859684	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1
chr3.1	exon	62859869	62859971	62859869	ID=MS.gene28862.t1.exon7;Parent=MS.gene28862.t1
chr3.1	CDS	62859869	62859971	62859869	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1
chr3.1	exon	62862940	62863080	62862940	ID=MS.gene28862.t1.exon8;Parent=MS.gene28862.t1
chr3.1	CDS	62862940	62863080	62862940	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1
chr3.1	exon	62863567	62864211	62863567	ID=MS.gene28862.t1.exon9;Parent=MS.gene28862.t1
chr3.1	CDS	62863567	62864211	62863567	ID=cds.MS.gene28862.t1;Parent=MS.gene28862.t1

Gene Sequence

>MS.gene28862

TTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTAAGTATTTGATTGATTTGTGTCGATTGATTTCCCCAATATACGTGATTTGGGGGTTAAGACGTGGGTGAATTCAAATGATTGCAACAGGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGTTCATTTCCCATTGATCTTGTTCGCGAGATTGGAAGACAACTATTGGAATGTGTTGCATGTGTGTAGTTTATTCTTGATCAACTTTTTTGAACAATTATCATAGCACTTCATCATATGTGTAACATCTCTATCTGTTGTTTTTTTTGTCAAAGAAGGGTGGTTTTCTAATTGTGTTTTAATTTTCAAAAAATTGCAGTCATGCATGACTTACACATGATCCATACTGATCTGAAGCCTGAAAACATTCTTCTTGTTTCATCAGAGTATCTTAAAATCCCCGACTACAAGGTACTTTTGTTGTCTATGAACCTGTTTTATTTACTCATAGATTTTGGTATTTTAGACATAATCATACTAGGTGAGGCATGTTCAATGCTGATGTTTAGAGAAAACTTTTTTTTTTTTTGATGCATTAGACTTGTCTTTCAAAAGTTTCTTAGCGATAGCATCTATGATGGGATGCTAGCTTAAATAACTAAGTTGCCAAGTGAATTGTTGGTTATGATATCTGACATCCAGTGTTGGTAATCAACAGAGTTCATCCAGAGCACCTTGCTCCTTTTACAAAAGAGTGCCCAAGTCAAGTGCTATAAAAGTTATTGATTTTGGCAGCACTACCTATGAACGAGAAAACCAAAATTACATTGTATCAACACGTCATTATAGGGCACCTGAAGTTATCCTTGGTATGTATACGAACTATATAATTGCTATGTTGCAAAATGTTGTTTCCTGTAGTTAATCTTGTTCATACGCTTAATGCTGTATCTTTATAAATCATGGCGCTATTGATATGCCAGCTAAATAGTTGATTTTTGTAATGGTTTTTTAGGACTTGGGTGGAGCTATCCATGTGATGTTTGGAGTGTGGGTTGTATATTAGTCGAATTATGCACTGTAAGTTTGACTCTGAATACTTCTGAAAAATGTCGGCCAGTTTTTGTTGTCCGTATTGTGTTTAAATTGGCTTGTATGCTTCTACTTCAGGGTGAAGCTCTGTTTCAGACTCACGAAAATTTAGAGCATCTTGCCATGATGGAGAGGGTGCTTGGTCCGTTACCGCAGCAGATATTGAAGAGAGTTGAGTAAGTAATTTACCGTGGGAACTTTCTATGATTGTCACTGTACAGGTCTTTGAAATAACCAGTGTTTCTTTTTCATGTTATGATTAGCCGACATGCTGAGAAGTATGTCCGAAGGGGGAGACTGGACTGGCCAGAGGGTGCAAATTCCAGGGAGAGTATTAAGGCTGTAATGAAGCTTCCTCGACTGCAGGTTTGTTTTCAAGTCTGGTCATGTAAACGTTAATATTCAGTTCTTTACAACAGCAATGGTAAATAGTTAATGCTGTGCTTCTCTAACTCTTAATTTTTCTATTATAATTGCAGAACCTTATAATGCAGCATGTCGATCATTCGGCTGGAGATCTTATACATCTTTTACAGGGGCTACTTAGATATGACCCATTTGAAAGAGTTACAGCTAGAGATGCTCTGAGACATCCATTCTTTATGAGAGATCACCTTAGGAGATGATTAGCCATTTTTAGAGGCCTAGTGTCCAAGTTGAATCTGTCAAAAGTGCAAATGTGAGTGTAAGGAGAAGGAAAGCTTGTAAATAAATATTTATATTATCAGCTTGTCTGATAAGTGAAGATGGTTATACAACAGCACCTTCCCCTCCAAGCCTGTCTGACCCAATCCTTATTTATTATAAAATTTAATGAACATGTATTTTACAAAAAACAACCGAGTGGAATGTATAGAACAAATGTGGAATGTTTTGAATACATTATCCATAATTATTCAGCTGCATGTATTCCTCATGGAAAGTTTGAACCGGTATGTGTTTCTTGAACTTTCAATTTGACCAGCACATAAAATAAGCTATTAGCGGTTAAAGTTAAGAAAGACAAATTTTTGGACCAAATCAATTAGATGATAGTCTTTAAGTTTTTACCTAATTGACTATATCCAAAGGACAATACAATAGCTAGTATAAATTACCATACAAAGTTATGTAATACATGACTAATTTAATAGAGTCGTTATCAAAATGAATTATCAAGCAGGAATTGAAATTTGTTAATTTTATACGACGTTATACGAAATTAACTATTTACTTGCACGTATACCCTTGCTGAAGTAGTGTTTGACCATATGGACAACGATTGCAACGTGAAGAGCAAAGATAACGGCACATTACGCGCTGTTTTGTTTTTTAATCTTATTGATGAAATAACTTTAGACGACTTGAGACGTTCTTTCACTTGTTGAACAAGCGAATCGTTATGTGATAATAAACAAAAGGGTCTTGCTAACCAATCCTTAGGACAATGGTTAAAGAATCTACAAATAAAAATTGTTGAACAAGGGAATTGTTGAGATAATAAACAAAAAGGTCTTGCTAACTAATACCTTCATGACAATAGTTAAGGAATCTATAAATAAAAATTTTGTCCTGAAAATATAAGATGTTATTTTGATAAAGTAATGATTACACAACTTTTTCATGAAAACTTACTTATTTTAGACGCTTAACCATTACTCATAGAACATTGGTTAATATTCTCCTAAACAAAATGTTACATTGTCGGAAAAAGATAGTTTCACCTTCATACACTTAAAAGAAAGTCGTTAGTTTGAAAGAGTAGGTGTTTTGCAATATTGCTCCATTGACTAATGAGTTCCTATTAATTATTTTTCAACAATGTCGATATATACATGGACATGATAAAATGACACCACGTATCTACTCACTCTTTATAAATGTATGTGTAACGAGGTTTCATCTTAGTTCAATCAAATCCAATCATATAAGATGAACAATCAGATGTTAAATATGAGTATCTTTGAATAGTGAAATCAAATATTGAGACCAGTCATTTCTTTGACAACCACCTTTAACGACCTCCATGTCTAGCGTTGATTAAGGATTTATGCGTTTCAATTGAACACCGTTAATCTTGATAATCTCAATAACATATAAAATAATTTTGGATTTGCGTAAAATTTTACATGAATGATTTATTTATACCATATATAAAGGAAATACGTGGTTTTGGGTTGACCTTTTGATTATCTTAATTATACCCTTAAACAAATTTTCTTATATTAATATTTATTGCTGGTGTCATTAAAAAAATAAAAATTTATATTATAGTTGCTATACTGTTTGTGTCATTGAAATAATATAACATGATTTGTTTGATTTGTTATAATTTGAAAGTTACAAACATCTAAAAAAAAACGTTCATAATTTACAAACGTTACCGGAAAAAAAAGAGCAGAATGCCAATTGTCCATTTTTACGCTAGTATGATATAAATTTGTAATCCAATGGCCAAATTTGAAAAAATATGTATCTAGTATTTTGATATAAACACATTGCACACACATTTTCTATGAAAAATCAAATGACTCAAGAAAGAATGGCTTTTCTGCAGCCACTAGCTCTAAAGCAAATGTTGTATGAGAAAATTTCAACACAATACTTAACCATTATCTTTTGCTTCACTAGCCTTGTGTTTGTGCTTAAACTGATAAGAAGAAATAAACTGAATTTGCCTCCTTCACCACCAAAGCTACCAATAATTGGCAATCTTCACCAACTTGGCACACTACCACACCAATCCTTCCATGCACTCTCTAAAAAATATGGCCCTCTCATGATGATGAAACTAGGTCAAACTCCAGCCATTGTTGTTTCATCAGTAGAAGTGGCCAAAGAAATATTCAAAAACCATGATGTTGTTTTCTCCAACAAGCCTCCGAACACGGCTGCAAATATCATTCTCTATGGATGCACAGACGTCGCTTTAGCACCCTATGGAGAAGAGTGGAGACAGAGAAGGAAGATTTGTGTTGTTGAACTTCTGAGCATGAAAAGAGTGCAATCTTTTCAGTCCATAAGAGAAGAAGAAGTAGCAGAGATTGTTGATACTTTAAAGGAAGCATGTGCAAGTGCAAGTGCAAGTGCAAGTAAAGAGTCTTCTATAGTGAATCTGAGTGAGATGCTGATTTCAGCCTCAAATAACATAGTTTCAAGGTGTGTTCTTGGACAAAAGTATGATACACCAGATGGTAGTGGTAGCTTTGGAGAGTTAGGAAGGAAGATGATGAAACAATTAGCAGCTTTCAGTGTTGGAGATCTTTTTCCTTCATTGGGTTGGATTGACATTCTTACTGGCCAAATATCTGAATTTAAGGCCACTTTCTGTGCATTAGATTCTTTCTTTGATCAGGTGATTGCAGATCACAAGAGGATGAAGAAGAGTGAAGGTGGCCAATCAGATAAGGACTTTGTGGAGATTCTACTTCAAGTTCAAGATGGTGCAAAGTATGATTTTCCACTCACAAATGATAACATCAAAGCAATCCTAATGGTATGCTTCTTCCTCTATTATTTTTTTCGCTATTTCTTAGCAGATATCACATCACTCGTAAAGATTTAGATTGAGCATAATTCGGACCTAATTCCACTTCACAGAATCGGTTTGTAAGTTGATACTAAACTTCATAACTTTCACTTATTACCACTATTTAGACTATATCACTATCCAATTTTTCCTGTTTGATTTAGTTTATTTGAGCTTGTCTACTAACATAAACACTTGCGTGACTGCTTGAATGAGCTTATGAAAACAACTTATTGCTTGCACAAAAGTTGTTTTCGGCTTATTTTCATAAACTCTCCAGGATAGTTTATGAAAATAATTCATATGAAAACAATTTAACTTTATTTTACCCTTGTCATGAAAATAGTTTATGTATAAATATGATAAGCGTTTAGTGTTTATCCAAACTAGACATAGTCGCGCACACCCAACTTAAAACAAGAGCATAAAGAATTTCCATTTTCACAATTTCAGGACATGTTTGCTGGAGGAGGTGATACTTCTTCAACACTTCTCGAGTGGACATTTGCTGAACTCATGAGGCATAAAAACATCATGAAGAAAGTCCAAGAAGAAATAAGAAAAGTTGTTGGGTATAAATCAAAAGTGGATGAAAATGATGTGAATGAAATGAATTACTTGAAGTGTGTAGTCAAAGAAACTATGAGATTACATCCACCTGCTCCTCTTTTGATACCTAGAGAAACTTTATCTGATGTGAGGGTTAAAGGGTTTGATATTCCATCCAAAACAAGAGTGTTTGTGAATGCATGGACAATTCAGAGGGACCCTGAATTTTGGAACAAGCCAGATGAGTACATTCCTGAAAGATTTGAAGAACAACCAGAAATTGATTTTAAAGGACAAGATTTGCAATACATTCCATTTGGTGCTGGGAGAAGAGGATGTCCTGGAATTTCATTTGGACTTGGTTCTACTGAGCTTTTGCTTGCTAATCTTCTCTATTGGTTTGACTGGAAGCTGCCTAAGATTGGTGCACATATGCAAGATATAGACATGAGTGAGATTCATGGGCTCACTGTTAGCAAGAAAGTACCACTTCATCTTGAACCTACACTACACTCATTTGGATCTCAACGACCATTACCTATCATGTGA

Protein sequence

>MS.gene28862.t1

LCANTELVULSUSYLYCVUETWTKLIRFSSEKQLSFISHUSCSRDWKTTIGMCCIHAULTHDPYUSEAUKHSSCFIRVSUNPRLQEFIQSTLLLLQKSAQVKCYKSYUFWQHYLUTRKPKLHCINTSLUGTUSYPWTWVELSMUCLECGLYISRIMHWUSSVSDSRKFRASCHDGEGAWSVTAADIEESUPTCUEVCPKGETGLARGCKFQGEYUGCNEASSTAGDCRSQEDEEEURWPIRUGLCGDSTSSSRWCKVUFSTHKUUHQSNPNGHVCWRRUYFFNTSRVDICUTHEAUKHHEESPRRNKKSCWVUIKSGUKUCEUNELLEVCSQRNYEITSTCSSFDTURNFIUCEGURVUYSIQNKSVCECMDNSEGPUILEQARUVHSUKIURTTRNUFURTRFAIHSIWCWEKRMSWNFIWTWFYUAFACUSSLLVULEAAUDWCTYARYRHEUDSWAHCUQESTTSSUTYTTLIWISTTITYHV