AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90428

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90428.t1 MTR_2g063460 96.633 594 10 1 1 594 1 584 0.0 1182
MS.gene90428.t1 MTR_2g063460 96.296 594 10 2 1 594 1 582 0.0 1173
MS.gene90428.t1 MTR_2g032660 42.115 520 227 18 70 544 46 536 5.23e-104 329
MS.gene90428.t1 MTR_4g123630 42.664 518 234 13 70 547 11 505 2.48e-103 326
MS.gene90428.t1 MTR_4g005110 64.783 230 75 2 318 545 337 562 1.04e-95 306
MS.gene90428.t1 MTR_8g088390 50.502 299 116 8 276 548 234 526 4.95e-85 277
MS.gene90428.t1 MTR_8g088390 50.502 299 116 8 276 548 299 591 1.05e-84 278
MS.gene90428.t1 MTR_2g005840 62.842 183 68 0 360 542 237 419 7.32e-83 268
MS.gene90428.t1 MTR_2g005840 62.842 183 68 0 360 542 268 450 2.61e-82 267
MS.gene90428.t1 MTR_7g085500 57.820 211 79 2 357 567 415 615 8.90e-80 265
MS.gene90428.t1 MTR_6g032970 52.033 246 88 5 322 547 336 571 3.32e-77 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90428.t1 AT1G79270 44.877 488 207 11 91 568 63 498 6.80e-123 372
MS.gene90428.t1 AT1G79270 44.877 488 207 11 91 568 63 498 6.80e-123 372
MS.gene90428.t1 AT1G79270 44.877 488 207 11 91 568 63 498 6.80e-123 372
MS.gene90428.t1 AT1G79270 44.877 488 207 11 91 568 78 513 7.89e-123 373
MS.gene90428.t1 AT1G48110 39.412 510 246 13 71 546 13 493 1.46e-98 313
MS.gene90428.t1 AT1G48110 39.412 510 246 13 71 546 13 493 1.46e-98 313
MS.gene90428.t1 AT3G13060 54.007 287 107 7 306 573 294 574 1.55e-92 297
MS.gene90428.t1 AT3G13060 54.007 287 107 7 306 573 294 574 1.55e-92 297
MS.gene90428.t1 AT3G13060 57.031 256 88 4 306 545 316 565 2.03e-92 297
MS.gene90428.t1 AT3G13060 57.031 256 88 4 306 545 306 555 2.50e-92 297
MS.gene90428.t1 AT3G17330 40.807 446 213 13 116 547 35 443 7.18e-90 290
MS.gene90428.t1 AT3G17330 40.807 446 213 13 116 547 35 443 7.18e-90 290
MS.gene90428.t1 AT3G17330 57.965 226 92 1 325 547 116 341 8.88e-90 286
MS.gene90428.t1 AT3G13460 51.203 291 115 6 287 557 338 621 1.21e-89 291
MS.gene90428.t1 AT3G13460 51.203 291 115 6 287 557 337 620 1.27e-89 291
MS.gene90428.t1 AT3G13460 51.203 291 115 6 287 557 335 618 1.28e-89 291
MS.gene90428.t1 AT1G09810 57.391 230 97 1 317 546 175 403 1.70e-85 274
MS.gene90428.t1 AT1G09810 51.799 278 126 4 273 546 111 384 1.71e-85 274
MS.gene90428.t1 AT1G09810 51.799 278 126 4 273 546 88 361 2.20e-85 273
MS.gene90428.t1 AT1G55500 53.307 257 97 4 303 540 268 520 6.08e-85 275
MS.gene90428.t1 AT1G55500 53.307 257 97 4 303 540 311 563 7.66e-85 276
MS.gene90428.t1 AT5G61020 55.274 237 86 4 322 545 197 426 3.02e-84 272
MS.gene90428.t1 AT5G61020 55.274 237 86 4 322 545 199 428 3.36e-84 272
MS.gene90428.t1 AT3G03950 55.357 224 96 1 322 545 190 409 3.26e-81 262
MS.gene90428.t1 AT3G03950 55.357 224 96 1 322 545 189 408 3.45e-81 261
MS.gene90428.t1 AT3G03950 55.357 224 96 1 322 545 193 412 3.48e-81 262
MS.gene90428.t1 AT1G27960 56.250 224 83 3 322 545 215 423 7.30e-79 257
MS.gene90428.t1 AT1G27960 56.250 224 83 3 322 545 289 497 6.44e-78 256
MS.gene90428.t1 AT5G58190 51.429 245 109 5 328 567 275 514 1.34e-76 253
MS.gene90428.t1 AT5G58190 51.429 245 109 5 328 567 274 513 1.38e-76 253
MS.gene90428.t1 AT1G55500 36.542 509 253 15 87 540 40 533 1.35e-75 251
MS.gene90428.t1 AT1G55500 36.542 509 253 15 87 540 83 576 1.48e-75 252
MS.gene90428.t1 AT1G55500 36.542 509 253 15 87 540 83 576 2.43e-75 251
MS.gene90428.t1 AT3G13060 56.075 214 72 4 306 503 316 523 2.28e-71 239
MS.gene90428.t1 AT3G13460 45.783 166 63 6 287 432 338 496 5.62e-29 121
MS.gene90428.t1 AT3G13060 43.357 143 59 4 306 432 316 452 4.29e-25 108
MS.gene90428.t1 AT1G27960 48.214 112 43 3 322 433 289 385 9.30e-20 92.8
MS.gene90428.t1 AT4G11970 30.357 168 82 5 355 503 44 195 2.19e-13 72.4
MS.gene90428.t1 AT4G11970 30.357 168 82 5 355 503 44 195 2.25e-13 72.4
MS.gene90428.t1 AT4G11970 30.357 168 82 5 355 503 44 195 2.28e-13 72.4
MS.gene90428.t1 AT4G11970 30.357 168 82 5 355 503 44 195 4.95e-13 72.0
MS.gene90428.t1 AT4G11970 30.357 168 82 5 355 503 44 195 4.95e-13 72.0

Find 135 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTACTTGTTGCTTTCATATT+AGG 0.139929 2.1:+32934352 None:intergenic
TATTCTGCTGGTAGTTATTA+TGG 0.145347 2.1:-32936113 MS.gene90428:CDS
TCAACAAAAGTATGGATTTC+TGG 0.157531 2.1:-32933772 MS.gene90428:CDS
GAAAAGTGCATGATCATATT+TGG 0.231336 2.1:+32934138 None:intergenic
TTAAACTCTGGAGGTAATTC+TGG 0.231621 2.1:-32934226 MS.gene90428:CDS
GTTACCTTGTTTGCTTGTTT+TGG 0.232110 2.1:+32934724 None:intergenic
GAGGCTCGACAATGCATTTC+AGG 0.241866 2.1:-32934032 MS.gene90428:CDS
CCTGGCTATATTTCACCTTA+TGG 0.275162 2.1:-32934991 MS.gene90428:CDS
GTGTCTCTACTATTTGTTAC+AGG 0.280235 2.1:+32933644 None:intergenic
ATGTTGATCTGTCCTGATTT+TGG 0.281400 2.1:+32934180 None:intergenic
AGTGGATTTCAACAAAAGTA+TGG 0.322061 2.1:-32933780 MS.gene90428:CDS
TCATATTTGGTTGGAAAATC+AGG 0.322709 2.1:+32934151 None:intergenic
CGATCTACCACTCGGTTTAC+TGG 0.323936 2.1:+32934885 None:intergenic
TGTATCGAGAACATCGATAT+TGG 0.347303 2.1:-32933457 MS.gene90428:CDS
ATTTCTGGCAGCAAGATAAA+TGG 0.351407 2.1:-32933757 MS.gene90428:CDS
ATATGCCGTAGCTGAGGATT+TGG 0.367053 2.1:+32933692 None:intergenic
AGGGAATCGTTATAATGAAT+TGG 0.374688 2.1:-32934908 MS.gene90428:CDS
CAGTATCAGGTTTACCCTCC+TGG 0.392158 2.1:-32935042 MS.gene90428:CDS
TTTATAATGTGCCATTTGAC+AGG 0.415396 2.1:+32933722 None:intergenic
TCCGTCTTTCAACAACCAAT+TGG 0.421822 2.1:-32935018 MS.gene90428:CDS
CTCTTGCATGACCTTCTGAC+GGG 0.425352 2.1:+32933413 None:intergenic
ATGTTCTTTACAACCAACTT+AGG 0.426914 2.1:+32932647 None:intergenic
TGGTGTCGATGTCCAGTATC+AGG 0.429764 2.1:-32935055 MS.gene90428:CDS
TAGGTCATGCAAGCAGATAA+TGG 0.430474 2.1:-32935144 MS.gene90428:CDS
TCGAGCCTCTTATTGCCATT+AGG 0.430781 2.1:+32934046 None:intergenic
GCGACGGGAAAAGAACCCTT+TGG 0.439928 2.1:+32934430 None:intergenic
AGATCATGTGTATCATCAAT+AGG 0.445206 2.1:-32936206 MS.gene90428:CDS
TTCACTTTCTCAACCAACTT+AGG 0.446586 2.1:+32932617 None:intergenic
ATGGAGAACAGGACCAGAAA+TGG 0.448479 2.1:+32934465 None:intergenic
AGAGCATCAAGTACGATGTA+TGG 0.449332 2.1:-32934078 MS.gene90428:CDS
CAGGAGGGTAAACCTGATAC+TGG 0.449509 2.1:+32935043 None:intergenic
TGTGGAGTAGCCGAGATGAT+TGG 0.450864 2.1:-32933806 MS.gene90428:CDS
TATTATGGATATTACTATCC+AGG 0.456293 2.1:-32936098 MS.gene90428:intron
GTTGAAGAAACATCTAATAT+TGG 0.457075 2.1:+32934766 None:intergenic
TCATCAATAGGAGATGCTTC+TGG 0.457910 2.1:-32936194 MS.gene90428:CDS
CAGAATGTTGCTTATTCTGC+TGG 0.462148 2.1:-32936125 MS.gene90428:CDS
TATGTTAAGGTTTCTTCAAA+GGG 0.467717 2.1:-32936254 MS.gene90428:intron
TCAATGGTGACACCAAAATC+AGG 0.467791 2.1:-32934192 MS.gene90428:CDS
TTATGTCGGCGCTGATGCTA+TGG 0.468389 2.1:-32935772 MS.gene90428:CDS
TCTCTTGCATGACCTTCTGA+CGG 0.475313 2.1:+32933412 None:intergenic
CAACAACCAATTGGATCCCC+TGG 0.475726 2.1:-32935009 MS.gene90428:CDS
ATTGCATCTGAATGGAGAAC+AGG 0.476903 2.1:+32934454 None:intergenic
CAACATTCTGATCAGTGGAT+TGG 0.479321 2.1:+32936138 None:intergenic
TACCGAAAAGAAAAGGAATA+CGG 0.480275 2.1:+32933970 None:intergenic
CCATAAGGTGAAATATAGCC+AGG 0.480961 2.1:+32934991 None:intergenic
GAGTAGCCAGTCTGATATCC+TGG 0.482425 2.1:+32935102 None:intergenic
CCTAGAACAGTTAATGCAAA+AGG 0.482609 2.1:-32934253 MS.gene90428:CDS
GAATCCCATGAGTATGTTGA+TGG 0.482741 2.1:+32934958 None:intergenic
GGTTGTTGAAAGACGGAACC+AGG 0.487017 2.1:+32935024 None:intergenic
CCTTTGGCATTGCATCTGAA+TGG 0.488787 2.1:+32934446 None:intergenic
TTATGTTAAGGTTTCTTCAA+AGG 0.495686 2.1:-32936255 MS.gene90428:intron
TATGGAGAGCAAGAAAATCA+AGG 0.500681 2.1:-32935798 MS.gene90428:CDS
ACGGATATTTCCCTGTCAAA+TGG 0.501338 2.1:-32933733 MS.gene90428:CDS
TACTTTCCTGTGAACACACC+TGG 0.502118 2.1:-32935075 MS.gene90428:CDS
GATAGCATACCGAAAAGAAA+AGG 0.504322 2.1:+32933963 None:intergenic
TATGTAGAAAACTTTGCGAC+GGG 0.505982 2.1:+32934415 None:intergenic
GCAAAAGGTACTTTAAACTC+TGG 0.507406 2.1:-32934238 MS.gene90428:CDS
TCTGGAGATAAGAGTGTCAA+TGG 0.513122 2.1:-32934208 MS.gene90428:CDS
TACTTCCATCAACATACTCA+TGG 0.517546 2.1:-32934963 MS.gene90428:CDS
CACATGCAAGCTTACCATGT+TGG 0.518787 2.1:+32936426 None:intergenic
TCGCAGAGTCGTACTGGCAG+TGG 0.526655 2.1:-32934853 MS.gene90428:CDS
AGTGCATGATCATATTTGGT+TGG 0.527014 2.1:+32934142 None:intergenic
ATATAGCCAGGGGATCCAAT+TGG 0.527493 2.1:+32935003 None:intergenic
CCCTTGTGCTACATCTTGTG+TGG 0.528879 2.1:+32934927 None:intergenic
GTACACCTAATGGCAATAAG+AGG 0.531549 2.1:-32934051 MS.gene90428:CDS
TCTTATGTCTATCTCATGCC+AGG 0.534138 2.1:-32935120 MS.gene90428:CDS
GATGGAAGTAACTCACCATA+AGG 0.536031 2.1:+32934976 None:intergenic
TCCAATTGGTTGTTGAAAGA+CGG 0.536670 2.1:+32935017 None:intergenic
GTATGGGCGAGTACACCTAA+TGG 0.536841 2.1:-32934061 MS.gene90428:CDS
TCACTTAATGAGCAGAATCA+AGG 0.540048 2.1:-32934277 MS.gene90428:CDS
GAACATGGAGGATCCTAAGT+TGG 0.540134 2.1:-32932630 MS.gene90428:CDS
GAACATGGAGGATCCTAAGT+TGG 0.540134 2.1:-32932660 MS.gene90428:CDS
TCGACACCAGGTGTGTTCAC+AGG 0.547002 2.1:+32935069 None:intergenic
CCAGCCAAAACAAGCAAACA+AGG 0.547719 2.1:-32934728 MS.gene90428:intron
CCATTCAGATGCAATGCCAA+AGG 0.548568 2.1:-32934446 MS.gene90428:CDS
CATTCAGATGCAATGCCAAA+GGG 0.552432 2.1:-32934445 MS.gene90428:CDS
CAGAATCGAATGGAAGAGAA+AGG 0.555397 2.1:-32934004 MS.gene90428:CDS
CAAACCTGTACATTGGTATG+TGG 0.555627 2.1:+32933369 None:intergenic
AAGGTTTCTTCAAAGGGTGG+TGG 0.558132 2.1:-32936248 MS.gene90428:CDS
GAGCATCAAGTACGATGTAT+GGG 0.559060 2.1:-32934077 MS.gene90428:CDS
TATGCCACATACCAATGTAC+AGG 0.568570 2.1:-32933373 MS.gene90428:intron
GAGCAACTCATCAGAAGTGA+AGG 0.569571 2.1:-32934797 MS.gene90428:CDS
CATATCAGCTGTAAAGAACA+TGG 0.571245 2.1:-32932675 MS.gene90428:CDS
CTCAGTACTAACCCATCCCT+TGG 0.572036 2.1:+32934330 None:intergenic
TTATAATGTGCCATTTGACA+GGG 0.573430 2.1:+32933723 None:intergenic
GAAGACTTAACAAGTGCACT+TGG 0.574492 2.1:-32932707 MS.gene90428:CDS
AGCAACAAGTACCAAGGGAT+GGG 0.576647 2.1:-32934341 MS.gene90428:CDS
CTCATGCCAGGATATCAGAC+TGG 0.577228 2.1:-32935108 MS.gene90428:CDS
GAAGAAACATCTAATATTGG+TGG 0.577898 2.1:+32934769 None:intergenic
ACCGAAAAGAAAAGGAATAC+GGG 0.578211 2.1:+32933971 None:intergenic
GTTAAGGTTTCTTCAAAGGG+TGG 0.579681 2.1:-32936251 MS.gene90428:intron
GTATGTAGAAAACTTTGCGA+CGG 0.581650 2.1:+32934414 None:intergenic
ACATACAATCAAGGAAAGAG+TGG 0.582689 2.1:-32934397 MS.gene90428:CDS
GCTTGTGATCATTATTCTCG+AGG 0.582868 2.1:+32933666 None:intergenic
ATGAAAGCAACAAGTACCAA+GGG 0.583635 2.1:-32934346 MS.gene90428:CDS
AGCCGAGATGATTGGACGAG+TGG 0.583728 2.1:-32933798 MS.gene90428:CDS
ACTTCCATCAACATACTCAT+GGG 0.589217 2.1:-32934962 MS.gene90428:CDS
ATCCACTCGTCCAATCATCT+CGG 0.591466 2.1:+32933796 None:intergenic
AAGCAACAAGTACCAAGGGA+TGG 0.592367 2.1:-32934342 MS.gene90428:CDS
TGAGTTCAGGTCAACGCTAG+TGG 0.593166 2.1:-32933836 MS.gene90428:intron
ATAAGCAACATTCTGATCAG+TGG 0.595793 2.1:+32936133 None:intergenic
ATATTCCAAATCCTCAGCTA+CGG 0.598835 2.1:-32933697 MS.gene90428:CDS
GTAAAATCAAACCTGTACAT+TGG 0.599665 2.1:+32933362 None:intergenic
GAAAATCAAGGATATTATGT+CGG 0.602073 2.1:-32935786 MS.gene90428:CDS
TGTACATTGGTATGTGGCAT+AGG 0.603452 2.1:+32933375 None:intergenic
TTGAGCATTTCAATACCTTG+CGG 0.609987 2.1:+32933495 None:intergenic
AGAATGATTACAGGTTATGG+TGG 0.612198 2.1:-32935825 MS.gene90428:intron
AAAGGTACTTTAAACTCTGG+AGG 0.617094 2.1:-32934235 MS.gene90428:CDS
TGAGTTGCTCACATTAGATG+AGG 0.617233 2.1:+32934810 None:intergenic
TGATACTGGACATCGACACC+AGG 0.618053 2.1:+32935057 None:intergenic
ATTTGGTTGGAAAATCAGGA+AGG 0.619406 2.1:+32934155 None:intergenic
CATAAGGTGAAATATAGCCA+GGG 0.620198 2.1:+32934992 None:intergenic
ACACATGATCTTGCATCAGA+TGG 0.625382 2.1:+32936218 None:intergenic
TAAGTTGGTTGTAAAGAACA+TGG 0.629871 2.1:-32932645 MS.gene90428:CDS
TATGAAAGCAACAAGTACCA+AGG 0.634095 2.1:-32934347 MS.gene90428:CDS
CATACAATCAAGGAAAGAGT+GGG 0.635967 2.1:-32934396 MS.gene90428:CDS
TCAGGATGCACAGAATCGAA+TGG 0.637168 2.1:-32934014 MS.gene90428:CDS
AGGATAATATGCCGTAGCTG+AGG 0.638343 2.1:+32933686 None:intergenic
ATGAATAAGAAGAAGCTGCA+TGG 0.646230 2.1:-32936478 MS.gene90428:CDS
GAGTTGCTCACATTAGATGA+GGG 0.650819 2.1:+32934811 None:intergenic
TGGCAGCAAGATAAATGGAA+CGG 0.653548 2.1:-32933752 MS.gene90428:CDS
AGCAACTCATCAGAAGTGAA+GGG 0.655536 2.1:-32934796 MS.gene90428:CDS
AAATAGTAGAGACACTCAAG+AGG 0.657180 2.1:-32933636 MS.gene90428:intron
GAAGCTGAAACTCAGAAACA+AGG 0.666505 2.1:-32934308 MS.gene90428:CDS
ACCACACAAGATGTAGCACA+AGG 0.668664 2.1:-32934928 MS.gene90428:CDS
GTTGAAAGACGGAACCAGGA+GGG 0.679018 2.1:+32935028 None:intergenic
GAAAAGATCGATCTACCACT+CGG 0.689012 2.1:+32934877 None:intergenic
ATAAGGTGAAATATAGCCAG+GGG 0.699657 2.1:+32934993 None:intergenic
GTTGAGAAAGTGAATGACTG+AGG 0.708180 2.1:-32932608 None:intergenic
TGAACATAATAATTCCAACA+TGG 0.712248 2.1:-32936440 MS.gene90428:intron
TGTTGAAAGACGGAACCAGG+AGG 0.716372 2.1:+32935027 None:intergenic
GTTGGTTGTAAAGAACATGG+AGG 0.739574 2.1:-32932642 MS.gene90428:CDS
CCACACAAGATGTAGCACAA+GGG 0.750655 2.1:-32934927 MS.gene90428:CDS
ATCAGCTGTAAAGAACATGG+AGG 0.773499 2.1:-32932672 MS.gene90428:CDS
GAATTGGCCAGTAAACCGAG+TGG 0.774424 2.1:-32934892 MS.gene90428:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGACTTCTAAATAAATTAT+TGG + chr2.1:32936258-32936277 None:intergenic 15.0%
!! ATAGTAGAAAAATAAAGAAT+TGG + chr2.1:32936213-32936232 None:intergenic 15.0%
!! ATATAAATGAAAAGTAAAGA+AGG + chr2.1:32936315-32936334 None:intergenic 15.0%
!! CATTTATTAAATATTGTGAA+AGG + chr2.1:32936071-32936090 None:intergenic 15.0%
!! GAAAATAACATGTTAATAAA+AGG - chr2.1:32933868-32933887 MS.gene90428:intron 15.0%
!! TAATTGTAACACAATTAAAA+AGG + chr2.1:32936288-32936307 None:intergenic 15.0%
!! TAGTAGAAAAATAAAGAATT+GGG + chr2.1:32936212-32936231 None:intergenic 15.0%
!! TATAAATGAAAAGTAAAGAA+GGG + chr2.1:32936314-32936333 None:intergenic 15.0%
!!! AATTCTTTATTTTTCTACTA+TGG - chr2.1:32936212-32936231 MS.gene90428:CDS 15.0%
!!! AATTTTTGTTGGTTTTATTT+AGG - chr2.1:32934088-32934107 MS.gene90428:CDS 15.0%
!!! ATGTTTTCTTATTGTATTTT+TGG - chr2.1:32932961-32932980 MS.gene90428:intron 15.0%
!!! GTAAATATCTAAATTTTTGT+TGG - chr2.1:32934077-32934096 MS.gene90428:CDS 15.0%
!!! TCTTTGCTTATATATAATTT+TGG - chr2.1:32936509-32936528 MS.gene90428:intron 15.0%
!!! TTGAATTCTGAAATAAATTT+GGG - chr2.1:32933827-32933846 MS.gene90428:CDS 15.0%
!!! TTTCTCTTTCTAAAATTATA+AGG + chr2.1:32934656-32934675 None:intergenic 15.0%
!!! TTTGAATTCTGAAATAAATT+TGG - chr2.1:32933826-32933845 MS.gene90428:CDS 15.0%
!! AAACAATAGTTAAAACAGAA+CGG + chr2.1:32934563-32934582 None:intergenic 20.0%
!! AATGTCAAAAAAGAATTCAT+TGG + chr2.1:32935988-32936007 None:intergenic 20.0%
!! AGATTATTCTAAATAGTTTG+TGG - chr2.1:32934749-32934768 MS.gene90428:CDS 20.0%
!! ATGAGTAGATTATGAAAATT+TGG + chr2.1:32936345-32936364 None:intergenic 20.0%
!! CAAAAACTAAAGAAATGAAA+GGG + chr2.1:32936481-32936500 None:intergenic 20.0%
!! CAAAGTAATTAATAACTCTT+TGG - chr2.1:32936154-32936173 MS.gene90428:CDS 20.0%
!! TGAGTAGATTATGAAAATTT+GGG + chr2.1:32936344-32936363 None:intergenic 20.0%
!!! ATTTGTTGTATGTTATGTTA+AGG - chr2.1:32932984-32933003 MS.gene90428:intron 20.0%
!!! ATTTTAGAAAGAGAAATAAG+TGG - chr2.1:32934660-32934679 MS.gene90428:intron 20.0%
!!! TCATGATAATTGTGTTATTA+TGG - chr2.1:32933549-32933568 MS.gene90428:intron 20.0%
!!! TGTTCTTCTTGTTTATTTTT+TGG - chr2.1:32932646-32932665 MS.gene90428:CDS 20.0%
!!! TTCTTTTTTGACATTATTGA+TGG - chr2.1:32935993-32936012 MS.gene90428:intron 20.0%
!!! TTTATGTTTTTCCTTTCTTA+CGG - chr2.1:32933402-32933421 MS.gene90428:CDS 20.0%
! AACTATATATTGAACTGTTG+GGG - chr2.1:32934683-32934702 MS.gene90428:intron 25.0%
! AACTCCAAATTATTCCAAAA+AGG + chr2.1:32936125-32936144 None:intergenic 25.0%
! AAGATACAGAAGAAATAACT+AGG + chr2.1:32935688-32935707 None:intergenic 25.0%
! ACTCCAAATTATTCCAAAAA+GGG + chr2.1:32936124-32936143 None:intergenic 25.0%
! ATGAGCAAATAAAACACAAA+CGG + chr2.1:32935347-32935366 None:intergenic 25.0%
! GAAAATCAAGGATATTATGT+CGG - chr2.1:32933465-32933484 MS.gene90428:CDS 25.0%
! GAACTATATATTGAACTGTT+GGG - chr2.1:32934682-32934701 MS.gene90428:intron 25.0%
! GCAAAAACTAAAGAAATGAA+AGG + chr2.1:32936482-32936501 None:intergenic 25.0%
! GTTGAAGAAACATCTAATAT+TGG + chr2.1:32934488-32934507 None:intergenic 25.0%
! TAACATTCAAGGAAAAAATG+TGG - chr2.1:32933970-32933989 MS.gene90428:intron 25.0%
! TAAGCATATATCTTCAGAAA+GGG - chr2.1:32933752-32933771 MS.gene90428:CDS 25.0%
! TATGTTAAGGTTTCTTCAAA+GGG - chr2.1:32932997-32933016 MS.gene90428:intron 25.0%
! TATTATGGATATTACTATCC+AGG - chr2.1:32933153-32933172 MS.gene90428:intron 25.0%
! TATTGCATTACACATGAAAA+TGG - chr2.1:32933900-32933919 MS.gene90428:intron 25.0%
! TCAGATTCAAGTATTTATAC+AGG + chr2.1:32933637-32933656 None:intergenic 25.0%
! TGAACATAATAATTCCAACA+TGG - chr2.1:32932811-32932830 MS.gene90428:intron 25.0%
! TGTAACACAATTAAAAAGGT+GGG + chr2.1:32936284-32936303 None:intergenic 25.0%
! TTAAGCATATATCTTCAGAA+AGG - chr2.1:32933751-32933770 MS.gene90428:CDS 25.0%
! TTAGTAAGAAGTAAGAACTT+TGG + chr2.1:32935935-32935954 None:intergenic 25.0%
! TTATGTTAAGGTTTCTTCAA+AGG - chr2.1:32932996-32933015 MS.gene90428:intron 25.0%
! TTGTAACACAATTAAAAAGG+TGG + chr2.1:32936285-32936304 None:intergenic 25.0%
!! AAGTTTTCTACATACAATCA+AGG - chr2.1:32934845-32934864 MS.gene90428:CDS 25.0%
!! TTTAGAATAGTTTGTCAACT+AGG + chr2.1:32936094-32936113 None:intergenic 25.0%
!!! AAGAAATGAAAGGGTTTTTT+CGG + chr2.1:32936472-32936491 None:intergenic 25.0%
!!! ACTTATTTTTACTCGAAACT+CGG - chr2.1:32936400-32936419 MS.gene90428:intron 25.0%
!!! ATACCCTTTTTGGAATAATT+TGG - chr2.1:32936118-32936137 MS.gene90428:CDS 25.0%
!!! ATTAGGAAAGTTGTTTTGAT+AGG + chr2.1:32934885-32934904 None:intergenic 25.0%
!!! ATTTTTTCCTTGAATGTTAC+AGG + chr2.1:32933969-32933988 None:intergenic 25.0%
!!! TTAGGAAAGTTGTTTTGATA+GGG + chr2.1:32934884-32934903 None:intergenic 25.0%
!!! TTCTGAAATAAATTTGGGAT+TGG - chr2.1:32933832-32933851 MS.gene90428:intron 25.0%
!!! TTTTGATAATTGTTGAGTTC+AGG - chr2.1:32935402-32935421 MS.gene90428:intron 25.0%
!!! TTTTGGAATAATTTGGAGTT+GGG - chr2.1:32936125-32936144 MS.gene90428:CDS 25.0%
!!! TTTTTGGAATAATTTGGAGT+TGG - chr2.1:32936124-32936143 MS.gene90428:CDS 25.0%
AGATCATGTGTATCATCAAT+AGG - chr2.1:32933045-32933064 MS.gene90428:intron 30.0%
AGGGAATCGTTATAATGAAT+TGG - chr2.1:32934343-32934362 MS.gene90428:CDS 30.0%
CAACCACAATTATGCAAAAA+TGG + chr2.1:32936041-32936060 None:intergenic 30.0%
GAAGAAACATCTAATATTGG+TGG + chr2.1:32934485-32934504 None:intergenic 30.0%
GGAACTATATATTGAACTGT+TGG - chr2.1:32934681-32934700 MS.gene90428:intron 30.0%
GTAAAATCAAACCTGTACAT+TGG + chr2.1:32935892-32935911 None:intergenic 30.0%
TAATCATTCTACCGTAAGAA+AGG + chr2.1:32933416-32933435 None:intergenic 30.0%
TACCGAAAAGAAAAGGAATA+CGG + chr2.1:32935284-32935303 None:intergenic 30.0%
TATTCTGCTGGTAGTTATTA+TGG - chr2.1:32933138-32933157 MS.gene90428:intron 30.0%
TCATATTTGGTTGGAAAATC+AGG + chr2.1:32935103-32935122 None:intergenic 30.0%
TGAGCAAATAAAACACAAAC+GGG + chr2.1:32935346-32935365 None:intergenic 30.0%
! AGTGGATTTCAACAAAAGTA+TGG - chr2.1:32935471-32935490 MS.gene90428:intron 30.0%
! ATTGATAACACTGACGAATA+GGG + chr2.1:32933199-32933218 None:intergenic 30.0%
! CATTTTTGCATAATTGTGGT+TGG - chr2.1:32936039-32936058 MS.gene90428:intron 30.0%
! CTGATAATTTGCATTGCATT+AGG - chr2.1:32933653-32933672 MS.gene90428:CDS 30.0%
! GAAAAGTGCATGATCATATT+TGG + chr2.1:32935116-32935135 None:intergenic 30.0%
! TCAACAAAAGTATGGATTTC+TGG - chr2.1:32935479-32935498 MS.gene90428:intron 30.0%
! TCTAAACTTGATACCCTTTT+TGG - chr2.1:32936108-32936127 MS.gene90428:CDS 30.0%
!! AATAGTTTGTGGTGTTTTTC+AGG - chr2.1:32934760-32934779 MS.gene90428:CDS 30.0%
!! AGAACTTTGGAATAAGAACA+AGG + chr2.1:32935922-32935941 None:intergenic 30.0%
!! GTACTTGTTGCTTTCATATT+AGG + chr2.1:32934902-32934921 None:intergenic 30.0%
!! TTATAATGTGCCATTTGACA+GGG + chr2.1:32935531-32935550 None:intergenic 30.0%
!! TTTATAATGTGCCATTTGAC+AGG + chr2.1:32935532-32935551 None:intergenic 30.0%
!!! AATTTGGGATTGGCTAATTT+TGG - chr2.1:32933842-32933861 MS.gene90428:intron 30.0%
!!! TAGGAAAGTTGTTTTGATAG+GGG + chr2.1:32934883-32934902 None:intergenic 30.0%
AAATAGTAGAGACACTCAAG+AGG - chr2.1:32935615-32935634 MS.gene90428:intron 35.0%
AATTGACCAGATATGCAACA+AGG + chr2.1:32933596-32933615 None:intergenic 35.0%
ACATACAATCAAGGAAAGAG+TGG - chr2.1:32934854-32934873 MS.gene90428:CDS 35.0%
ACCGAAAAGAAAAGGAATAC+GGG + chr2.1:32935283-32935302 None:intergenic 35.0%
ACTTCCATCAACATACTCAT+GGG - chr2.1:32934289-32934308 MS.gene90428:CDS 35.0%
AGAATGATTACAGGTTATGG+TGG - chr2.1:32933426-32933445 MS.gene90428:CDS 35.0%
AGTGCATGATCATATTTGGT+TGG + chr2.1:32935112-32935131 None:intergenic 35.0%
ATAAGCAACATTCTGATCAG+TGG + chr2.1:32933121-32933140 None:intergenic 35.0%
ATAAGGTGAAATATAGCCAG+GGG + chr2.1:32934261-32934280 None:intergenic 35.0%
ATATTCCAAATCCTCAGCTA+CGG - chr2.1:32935554-32935573 MS.gene90428:intron 35.0%
ATGAAAGCAACAAGTACCAA+GGG - chr2.1:32934905-32934924 MS.gene90428:CDS 35.0%
ATGAATAAGAAGAAGCTGCA+TGG - chr2.1:32932773-32932792 MS.gene90428:intron 35.0%
ATGGCTGCTGAATTGAAAAA+AGG - chr2.1:32932610-32932629 MS.gene90428:CDS 35.0%
ATTTGGTTGGAAAATCAGGA+AGG + chr2.1:32935099-32935118 None:intergenic 35.0%
CAATAGTTAAAACAGAACGG+AGG + chr2.1:32934560-32934579 None:intergenic 35.0%
CATAAGGTGAAATATAGCCA+GGG + chr2.1:32934262-32934281 None:intergenic 35.0%
CATACAATCAAGGAAAGAGT+GGG - chr2.1:32934855-32934874 MS.gene90428:CDS 35.0%
CATATCAGCTGTAAAGAACA+TGG - chr2.1:32936576-32936595 MS.gene90428:intron 35.0%
CCTAGAACAGTTAATGCAAA+AGG - chr2.1:32934998-32935017 MS.gene90428:CDS 35.0%
CTCACAACAACATGAAACAA+TGG + chr2.1:32933699-32933718 None:intergenic 35.0%
GATAGCATACCGAAAAGAAA+AGG + chr2.1:32935291-32935310 None:intergenic 35.0%
GGTAGAATGATTACAGGTTA+TGG - chr2.1:32933423-32933442 MS.gene90428:CDS 35.0%
GTATGTAGAAAACTTTGCGA+CGG + chr2.1:32934840-32934859 None:intergenic 35.0%
TACTTCCATCAACATACTCA+TGG - chr2.1:32934288-32934307 MS.gene90428:CDS 35.0%
TATGAAAGCAACAAGTACCA+AGG - chr2.1:32934904-32934923 MS.gene90428:CDS 35.0%
TATGGAGAGCAAGAAAATCA+AGG - chr2.1:32933453-32933472 MS.gene90428:CDS 35.0%
TATGTAGAAAACTTTGCGAC+GGG + chr2.1:32934839-32934858 None:intergenic 35.0%
TCACTTAATGAGCAGAATCA+AGG - chr2.1:32934974-32934993 MS.gene90428:CDS 35.0%
TCCAATTGGTTGTTGAAAGA+CGG + chr2.1:32934237-32934256 None:intergenic 35.0%
TCTTACGGTAGAATGATTAC+AGG - chr2.1:32933417-32933436 MS.gene90428:CDS 35.0%
TGTATCGAGAACATCGATAT+TGG - chr2.1:32935794-32935813 MS.gene90428:CDS 35.0%
TTAGACAGCGACAAATAAAC+AGG + chr2.1:32934591-32934610 None:intergenic 35.0%
TTCACTTTCTCAACCAACTT+AGG + chr2.1:32936637-32936656 None:intergenic 35.0%
TTGAGCATTTCAATACCTTG+CGG + chr2.1:32935759-32935778 None:intergenic 35.0%
! AAGTTTCTTGAGCTGGTTTA+TGG - chr2.1:32933518-32933537 MS.gene90428:intron 35.0%
! ATGTTGATCTGTCCTGATTT+TGG + chr2.1:32935074-32935093 None:intergenic 35.0%
! CCTTTTGCATTAACTGTTCT+AGG + chr2.1:32935001-32935020 None:intergenic 35.0%
! GATTGATAACACTGACGAAT+AGG + chr2.1:32933200-32933219 None:intergenic 35.0%
! GTGTCTCTACTATTTGTTAC+AGG + chr2.1:32935610-32935629 None:intergenic 35.0%
! TCCCGTATTCCTTTTCTTTT+CGG - chr2.1:32935279-32935298 MS.gene90428:intron 35.0%
! TTAAACTCTGGAGGTAATTC+TGG - chr2.1:32935025-32935044 MS.gene90428:CDS 35.0%
! TTTTGCATAATTGTGGTTGG+AGG - chr2.1:32936042-32936061 MS.gene90428:intron 35.0%
!! AAAGGTACTTTAAACTCTGG+AGG - chr2.1:32935016-32935035 MS.gene90428:CDS 35.0%
!! ATTTCTGGCAGCAAGATAAA+TGG - chr2.1:32935494-32935513 MS.gene90428:intron 35.0%
!! CTATGGTTGATGTGTTCTTT+TGG - chr2.1:32936229-32936248 MS.gene90428:CDS 35.0%
!! GCAAAAGGTACTTTAAACTC+TGG - chr2.1:32935013-32935032 MS.gene90428:CDS 35.0%
!! GGACCATTTTTGCATAATTG+TGG - chr2.1:32936035-32936054 MS.gene90428:intron 35.0%
!! GTTACCTTGTTTGCTTGTTT+TGG + chr2.1:32934530-32934549 None:intergenic 35.0%
!!! ACAGGTTATGGTGGATTTTA+TGG - chr2.1:32933435-32933454 MS.gene90428:CDS 35.0%
!!! GCTTCTGGTAGTTTTAAAGA+AGG - chr2.1:32933072-32933091 MS.gene90428:intron 35.0%
!!! GTTTTTTCGGTTGACTAGTT+TGG + chr2.1:32936459-32936478 None:intergenic 35.0%
AAAACAGAACGGAGGAAGTA+AGG + chr2.1:32934552-32934571 None:intergenic 40.0%
AACCAGCTCAAGAAACTTAC+AGG + chr2.1:32933516-32933535 None:intergenic 40.0%
ACACATGATCTTGCATCAGA+TGG + chr2.1:32933036-32933055 None:intergenic 40.0%
ACGGATATTTCCCTGTCAAA+TGG - chr2.1:32935518-32935537 MS.gene90428:intron 40.0%
AGCAACTCATCAGAAGTGAA+GGG - chr2.1:32934455-32934474 MS.gene90428:CDS 40.0%
ATCAGCTGTAAAGAACATGG+AGG - chr2.1:32936579-32936598 MS.gene90428:intron 40.0%
ATCCTGTAAGTTTCTTGAGC+TGG - chr2.1:32933511-32933530 MS.gene90428:intron 40.0%
ATTGCATCTGAATGGAGAAC+AGG + chr2.1:32934800-32934819 None:intergenic 40.0%
CAAACCTGTACATTGGTATG+TGG + chr2.1:32935885-32935904 None:intergenic 40.0%
CAACATTCTGATCAGTGGAT+TGG + chr2.1:32933116-32933135 None:intergenic 40.0%
CAGAATCGAATGGAAGAGAA+AGG - chr2.1:32935247-32935266 MS.gene90428:intron 40.0%
CATTCAGATGCAATGCCAAA+GGG - chr2.1:32934806-32934825 MS.gene90428:CDS 40.0%
CCATAAGGTGAAATATAGCC+AGG + chr2.1:32934263-32934282 None:intergenic 40.0%
CCTGGCTATATTTCACCTTA+TGG - chr2.1:32934260-32934279 MS.gene90428:CDS 40.0%
CTCTGTTCTGTTAAGACCTA+CGG - chr2.1:32935320-32935339 MS.gene90428:intron 40.0%
CTGATGTCCTGTAACATTCA+AGG - chr2.1:32933959-32933978 MS.gene90428:intron 40.0%
GAAAAGATCGATCTACCACT+CGG + chr2.1:32934377-32934396 None:intergenic 40.0%
GAAGACTTAACAAGTGCACT+TGG - chr2.1:32936544-32936563 MS.gene90428:intron 40.0%
GAAGCTGAAACTCAGAAACA+AGG - chr2.1:32934943-32934962 MS.gene90428:CDS 40.0%
GAATCCCATGAGTATGTTGA+TGG + chr2.1:32934296-32934315 None:intergenic 40.0%
GAGCATCAAGTACGATGTAT+GGG - chr2.1:32935174-32935193 MS.gene90428:intron 40.0%
GAGTTGCTCACATTAGATGA+GGG + chr2.1:32934443-32934462 None:intergenic 40.0%
GATGGAAGTAACTCACCATA+AGG + chr2.1:32934278-32934297 None:intergenic 40.0%
GCTTGTGATCATTATTCTCG+AGG + chr2.1:32935588-32935607 None:intergenic 40.0%
GTACACCTAATGGCAATAAG+AGG - chr2.1:32935200-32935219 MS.gene90428:intron 40.0%
GTTAAGGTTTCTTCAAAGGG+TGG - chr2.1:32933000-32933019 MS.gene90428:intron 40.0%
TACCTTGCGGAAAATGAATC+TGG + chr2.1:32935746-32935765 None:intergenic 40.0%
TAGGTCATGCAAGCAGATAA+TGG - chr2.1:32934107-32934126 MS.gene90428:CDS 40.0%
TATGCCACATACCAATGTAC+AGG - chr2.1:32935878-32935897 MS.gene90428:intron 40.0%
TCAATGGTGACACCAAAATC+AGG - chr2.1:32935059-32935078 MS.gene90428:CDS 40.0%
TCATCAATAGGAGATGCTTC+TGG - chr2.1:32933057-32933076 MS.gene90428:intron 40.0%
TCCGTCTTTCAACAACCAAT+TGG - chr2.1:32934233-32934252 MS.gene90428:CDS 40.0%
TCTTATGTCTATCTCATGCC+AGG - chr2.1:32934131-32934150 MS.gene90428:CDS 40.0%
TGAGTTGCTCACATTAGATG+AGG + chr2.1:32934444-32934463 None:intergenic 40.0%
TGGCAGCAAGATAAATGGAA+CGG - chr2.1:32935499-32935518 MS.gene90428:intron 40.0%
TGTACATTGGTATGTGGCAT+AGG + chr2.1:32935879-32935898 None:intergenic 40.0%
TTTGTTCAGATTCCGCTATG+CGG - chr2.1:32933322-32933341 MS.gene90428:intron 40.0%
! AACGCTAGTGGTCAATTTTG+TGG - chr2.1:32935427-32935446 MS.gene90428:intron 40.0%
! AGAGCATCAAGTACGATGTA+TGG - chr2.1:32935173-32935192 MS.gene90428:intron 40.0%
! CAGAATGTTGCTTATTCTGC+TGG - chr2.1:32933126-32933145 MS.gene90428:intron 40.0%
! TAGTTGCCTTGTTGCATATC+TGG - chr2.1:32933587-32933606 MS.gene90428:intron 40.0%
! TTCCAGATTCATTTTCCGCA+AGG - chr2.1:32935741-32935760 MS.gene90428:intron 40.0%
! TTTTTACGAAACCCGTCAGA+AGG - chr2.1:32935827-32935846 MS.gene90428:intron 40.0%
!! TCTGGAGATAAGAGTGTCAA+TGG - chr2.1:32935043-32935062 MS.gene90428:CDS 40.0%
!!! GTTTTTCAGGCATCCATTTC+TGG - chr2.1:32934773-32934792 MS.gene90428:CDS 40.0%
AAGCAACAAGTACCAAGGGA+TGG - chr2.1:32934909-32934928 MS.gene90428:CDS 45.0%
AAGGTTTCTTCAAAGGGTGG+TGG - chr2.1:32933003-32933022 MS.gene90428:intron 45.0%
ACATTAACGCTACCGCATAG+CGG + chr2.1:32933337-32933356 None:intergenic 45.0%
ACCACACAAGATGTAGCACA+AGG - chr2.1:32934323-32934342 MS.gene90428:CDS 45.0%
ACTGACGAATAGGGAACCAT+GGG + chr2.1:32933190-32933209 None:intergenic 45.0%
AGCAACAAGTACCAAGGGAT+GGG - chr2.1:32934910-32934929 MS.gene90428:CDS 45.0%
AGGACATCAGAGATGATGTC+GGG + chr2.1:32933949-32933968 None:intergenic 45.0%
AGGATAATATGCCGTAGCTG+AGG + chr2.1:32935568-32935587 None:intergenic 45.0%
ATAAAACACAAACGGGCCGT+AGG + chr2.1:32935339-32935358 None:intergenic 45.0%
ATATAGCCAGGGGATCCAAT+TGG + chr2.1:32934251-32934270 None:intergenic 45.0%
ATATGCCGTAGCTGAGGATT+TGG + chr2.1:32935562-32935581 None:intergenic 45.0%
ATCCACTCGTCCAATCATCT+CGG + chr2.1:32935458-32935477 None:intergenic 45.0%
ATGGAGAACAGGACCAGAAA+TGG + chr2.1:32934789-32934808 None:intergenic 45.0%
CACATGCAAGCTTACCATGT+TGG + chr2.1:32932828-32932847 None:intergenic 45.0%
CAGGACATCAGAGATGATGT+CGG + chr2.1:32933950-32933969 None:intergenic 45.0%
CCACACAAGATGTAGCACAA+GGG - chr2.1:32934324-32934343 MS.gene90428:CDS 45.0%
CCAGCCAAAACAAGCAAACA+AGG - chr2.1:32934523-32934542 MS.gene90428:intron 45.0%
CCATTCAGATGCAATGCCAA+AGG - chr2.1:32934805-32934824 MS.gene90428:CDS 45.0%
CCTTTGGCATTGCATCTGAA+TGG + chr2.1:32934808-32934827 None:intergenic 45.0%
GAACATGGAGGATCCTAAGT+TGG - chr2.1:32936591-32936610 MS.gene90428:intron 45.0%
GAGCAACTCATCAGAAGTGA+AGG - chr2.1:32934454-32934473 MS.gene90428:CDS 45.0%
GGATGAGTGCATGTGATTGT+GGG - chr2.1:32936014-32936033 MS.gene90428:intron 45.0%
TACTTTCCTGTGAACACACC+TGG - chr2.1:32934176-32934195 MS.gene90428:CDS 45.0%
TCAGGATGCACAGAATCGAA+TGG - chr2.1:32935237-32935256 MS.gene90428:intron 45.0%
TCGAGCCTCTTATTGCCATT+AGG + chr2.1:32935208-32935227 None:intergenic 45.0%
TCTCTTGCATGACCTTCTGA+CGG + chr2.1:32935842-32935861 None:intergenic 45.0%
TGAACTGTTGGGGATTTCGT+AGG - chr2.1:32934693-32934712 MS.gene90428:intron 45.0%
TGGATGAGTGCATGTGATTG+TGG - chr2.1:32936013-32936032 MS.gene90428:intron 45.0%
! TTTTCTTCGCAGAGTCGTAC+TGG - chr2.1:32934392-32934411 MS.gene90428:CDS 45.0%
!!! CCTTGTTTGCTTGTTTTGGC+TGG + chr2.1:32934526-32934545 None:intergenic 45.0%
!!! TTTATTTTTTTTATATTTTG+CGG - chr2.1:32932875-32932894 MS.gene90428:intron 5.0%
ACGAATAGGGAACCATGGGA+GGG + chr2.1:32933186-32933205 None:intergenic 50.0%
CAACAACCAATTGGATCCCC+TGG - chr2.1:32934242-32934261 MS.gene90428:CDS 50.0%
CACTGACGAATAGGGAACCA+TGG + chr2.1:32933191-32933210 None:intergenic 50.0%
CAGGAGGGTAAACCTGATAC+TGG + chr2.1:32934211-32934230 None:intergenic 50.0%
CAGTATCAGGTTTACCCTCC+TGG - chr2.1:32934209-32934228 MS.gene90428:CDS 50.0%
CCCTTGTGCTACATCTTGTG+TGG + chr2.1:32934327-32934346 None:intergenic 50.0%
CGATCTACCACTCGGTTTAC+TGG + chr2.1:32934369-32934388 None:intergenic 50.0%
CTCAGTACTAACCCATCCCT+TGG + chr2.1:32934924-32934943 None:intergenic 50.0%
CTCATGCCAGGATATCAGAC+TGG - chr2.1:32934143-32934162 MS.gene90428:CDS 50.0%
CTCTTGCATGACCTTCTGAC+GGG + chr2.1:32935841-32935860 None:intergenic 50.0%
GAATTGGCCAGTAAACCGAG+TGG - chr2.1:32934359-32934378 MS.gene90428:CDS 50.0%
GAGGCTCGACAATGCATTTC+AGG - chr2.1:32935219-32935238 MS.gene90428:intron 50.0%
GAGTAGCCAGTCTGATATCC+TGG + chr2.1:32934152-32934171 None:intergenic 50.0%
GCTATGCGGTAGCGTTAATG+TGG - chr2.1:32933336-32933355 MS.gene90428:intron 50.0%
GGTTGTTGAAAGACGGAACC+AGG + chr2.1:32934230-32934249 None:intergenic 50.0%
GTATGGGCGAGTACACCTAA+TGG - chr2.1:32935190-32935209 MS.gene90428:intron 50.0%
GTTGAAAGACGGAACCAGGA+GGG + chr2.1:32934226-32934245 None:intergenic 50.0%
TGAGTTCAGGTCAACGCTAG+TGG - chr2.1:32935415-32935434 MS.gene90428:intron 50.0%
TGATACTGGACATCGACACC+AGG + chr2.1:32934197-32934216 None:intergenic 50.0%
TGTGGAGTAGCCGAGATGAT+TGG - chr2.1:32935445-32935464 MS.gene90428:intron 50.0%
TGTTGAAAGACGGAACCAGG+AGG + chr2.1:32934227-32934246 None:intergenic 50.0%
!! TGGTGTCGATGTCCAGTATC+AGG - chr2.1:32934196-32934215 MS.gene90428:CDS 50.0%
!! TTATGTCGGCGCTGATGCTA+TGG - chr2.1:32933479-32933498 MS.gene90428:CDS 50.0%
AGCCGAGATGATTGGACGAG+TGG - chr2.1:32935453-32935472 MS.gene90428:intron 55.0%
GACGAATAGGGAACCATGGG+AGG + chr2.1:32933187-32933206 None:intergenic 55.0%
GCGACGGGAAAAGAACCCTT+TGG + chr2.1:32934824-32934843 None:intergenic 55.0%
TCGACACCAGGTGTGTTCAC+AGG + chr2.1:32934185-32934204 None:intergenic 55.0%
CCATGGGAGGGAAGCTAACC+TGG + chr2.1:32933174-32933193 None:intergenic 60.0%
! TCGCAGAGTCGTACTGGCAG+TGG - chr2.1:32934398-32934417 MS.gene90428:CDS 60.0%
!! CCAGGTTAGCTTCCCTCCCA+TGG - chr2.1:32933171-32933190 MS.gene90428:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 32932610 32936663 32932610 ID=MS.gene90428
chr2.1 mRNA 32932610 32936663 32932610 ID=MS.gene90428.t1;Parent=MS.gene90428
chr2.1 exon 32936642 32936663 32936642 ID=MS.gene90428.t1.exon1;Parent=MS.gene90428.t1
chr2.1 CDS 32936642 32936663 32936642 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
chr2.1 exon 32936441 32936511 32936441 ID=MS.gene90428.t1.exon2;Parent=MS.gene90428.t1
chr2.1 CDS 32936441 32936511 32936441 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
chr2.1 exon 32936099 32936267 32936099 ID=MS.gene90428.t1.exon3;Parent=MS.gene90428.t1
chr2.1 CDS 32936099 32936267 32936099 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
chr2.1 exon 32935758 32935834 32935758 ID=MS.gene90428.t1.exon4;Parent=MS.gene90428.t1
chr2.1 CDS 32935758 32935834 32935758 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
chr2.1 exon 32934729 32935163 32934729 ID=MS.gene90428.t1.exon5;Parent=MS.gene90428.t1
chr2.1 CDS 32934729 32935163 32934729 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
chr2.1 exon 32933973 32934491 32933973 ID=MS.gene90428.t1.exon6;Parent=MS.gene90428.t1
chr2.1 CDS 32933973 32934491 32933973 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
chr2.1 exon 32933637 32933849 32933637 ID=MS.gene90428.t1.exon7;Parent=MS.gene90428.t1
chr2.1 CDS 32933637 32933849 32933637 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
chr2.1 exon 32933374 32933526 32933374 ID=MS.gene90428.t1.exon8;Parent=MS.gene90428.t1
chr2.1 CDS 32933374 32933526 32933374 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
chr2.1 exon 32932610 32932735 32932610 ID=MS.gene90428.t1.exon9;Parent=MS.gene90428.t1
chr2.1 CDS 32932610 32932735 32932610 ID=cds.MS.gene90428.t1;Parent=MS.gene90428.t1
Gene Sequence

>MS.gene90428

ATGGCTGCTGAATTGAAAAAAGGTATTTGTTTTCTTTGTTCTTCTTGTTTATTTTTTGGTTTAGATTTAAATTTTATTTCAATTTGATTATGATTTGAATATTTTGATTTTTTTTTTAATAAAAATGAGATTTTTACTGTGTTTTTTTACAGCTGCAGATGAAATGAATAAGAAGAAGCTGCATGGTGATTCTTCAACAGCTGAACATAATAATTCCAACATGGTAAGCTTGCATGTGATTTCTAAATTTTTATTTTATTTTTGTTTTATTTTTTTTATATTTTGCGGCTTAATTTTGAATTTTGAAATTAACTGTTTCATTAGTTATATGCATGAAACTTGAAGAATTACATGTTTTCTTATTGTATTTTTGGATTTGTTGTATGTTATGTTAAGGTTTCTTCAAAGGGTGGTGGAAGTTCACCATCTGATGCAAGATCATGTGTATCATCAATAGGAGATGCTTCTGGTAGTTTTAAAGAAGGCGATGTTGATCATGAATTCCAATCCACTGATCAGAATGTTGCTTATTCTGCTGGTAGTTATTATGGATATTACTATCCAGGTTAGCTTCCCTCCCATGGTTCCCTATTCGTCAGTGTTATCAATCGCAGATCGCAGAAACTAGCAGTTTGTTCAAATTATGATATGCTATATCACAGTTGTTGATGCTATTTGACAACAGTTTGTTTAAAATAGAGAACAGTAGCGATTTGTTCAGATTCCGCTATGCGGTAGCGTTAATGTGGCTGCTATTTGACAACACTGCTATTCGTTTATGTTGATTGTATATTTATGTTTTTCCTTTCTTACGGTAGAATGATTACAGGTTATGGTGGATTTTATGGAGAGCAAGAAAATCAAGGATATTATGTCGGCGCTGATGCTATGGATTTTCAGTATCCTGTAAGTTTCTTGAGCTGGTTTATGGTTTTTTTGTCATGATAATTGTGTTATTATGGTTCAGTCTTTCTATGTAGTTGCCTTGTTGCATATCTGGTCAATTCAGTCTATGCATTTGATGCCTGTATAAATACTTGAATCTGATAATTTGCATTGCATTAGGCAAGTCTTTAGAATCATATTCCATTGTTTCATGTTGTTGTGAGAAACATGCATGTGTCTCAAAGAATCGTATTCTTTAAGCATATATCTTCAGAAAGGGTTGAATAGAAAATAAAACTGTAATGATGATGTATAATGTTTTTTAGCACATTTTGAATTCTGAAATAAATTTGGGATTGGCTAATTTTGGCTTGAAAATAACATGTTAATAAAAGGCTTCATTCATATTGCATTACACATGAAAATGGTTAATATTTTAAACTACTATTTACCCGACATCATCTCTGATGTCCTGTAACATTCAAGGAAAAAATGTGGCTAGTAAATATGATTTTATGAAATGATAAGAATTCATTATGCAGACATATACTTGATCTCTCATATGTTCTACAACATATATATGTAAATATCTAAATTTTTGTTGGTTTTATTTAGGTCATGCAAGCAGATAATGGATCTTATGTCTATCTCATGCCAGGATATCAGACTGGCTACTCTTCATACTTTCCTGTGAACACACCTGGTGTCGATGTCCAGTATCAGGTTTACCCTCCTGGTTCCGTCTTTCAACAACCAATTGGATCCCCTGGCTATATTTCACCTTATGGTGAGTTACTTCCATCAACATACTCATGGGATTCATCTTTAACCACACAAGATGTAGCACAAGGGAATCGTTATAATGAATTGGCCAGTAAACCGAGTGGTAGATCGATCTTTTCTTCGCAGAGTCGTACTGGCAGTGGTATTGTGTCAAAGTCTGTGCCCTCATCTAATGTGAGCAACTCATCAGAAGTGAAGGGTTTGCCACCAATATTAGATGTTTCTTCAACACATGTTAAGCGCAACCAGCCAAAACAAGCAAACAAGGTAACCTTACTTCCTCCGTTCTGTTTTAACTATTGTTTTTGTTCCTGTTTATTTGTCGCTGTCTAAGTTCAATGCAATATTAACTATTGTTTTTTCGATATATGCTTACCTTATAATTTTAGAAAGAGAAATAAGTGGAACTATATATTGAACTGTTGGGGATTTCGTAGGAAAACAACAAATAATTTCATCAAAAGTTAAATTAGATTATTCTAAATAGTTTGTGGTGTTTTTCAGGCATCCATTTCTGGTCCTGTTCTCCATTCAGATGCAATGCCAAAGGGTTCTTTTCCCGTCGCAAAGTTTTCTACATACAATCAAGGAAAGAGTGGGTTCCCCTATCAAAACAACTTTCCTAATATGAAAGCAACAAGTACCAAGGGATGGGTTAGTACTGAGAAGCTGAAACTCAGAAACAAGGTTAATGATTCACTTAATGAGCAGAATCAAGGTCCTAGAACAGTTAATGCAAAAGGTACTTTAAACTCTGGAGGTAATTCTGGAGATAAGAGTGTCAATGGTGACACCAAAATCAGGACAGATCAACATAACCTTCCTGATTTTCCAACCAAATATGATCATGCACTTTTCTTCGTCATTAAATCGTACAGTGAAGATGATGTTCATAAGAGCATCAAGTACGATGTATGGGCGAGTACACCTAATGGCAATAAGAGGCTCGACAATGCATTTCAGGATGCACAGAATCGAATGGAAGAGAAAGGAAGCATGTGTCCCGTATTCCTTTTCTTTTCGGTATGCTATCAAGTTCAATCTCTGTTCTGTTAAGACCTACGGCCCGTTTGTGTTTTATTTGCTCATTTATTTATCTTAGAAAAATACGACTCACATCAGTGTTTTGATAATTGTTGAGTTCAGGTCAACGCTAGTGGTCAATTTTGTGGAGTAGCCGAGATGATTGGACGAGTGGATTTCAACAAAAGTATGGATTTCTGGCAGCAAGATAAATGGAACGGATATTTCCCTGTCAAATGGCACATTATAAAAGATATTCCAAATCCTCAGCTACGGCATATTATCCTCGAGAATAATGATCACAAGCCTGTAACAAATAGTAGAGACACTCAAGAGGTTTGCATTTTTTTAACATTCTATTAAAGCAACTGTTTACAGAAATGTCCTAGTTATTTCTTCTGTATCTTCACTATTGTGTTAATTGTGTTAATGTTTCGACTTTCCAGATTCATTTTCCGCAAGGTATTGAAATGCTCAACATTTTCAAAAACTATGTATCGAGAACATCGATATTGGATGATTTTGATTTTTACGAAACCCGTCAGAAGGTCATGCAAGAGAAGAAAATAAGACAACCTATGCCACATACCAATGTACAGGTTTGATTTTACACTTGTACCTTGTTCTTATTCCAAAGTTCTTACTTCTTACTAATGATAGCACTAGCACTAGCACATATTGATTCCAATGAATTCTTTTTTGACATTATTGATGGATGAGTGCATGTGATTGTGGGACCATTTTTGCATAATTGTGGTTGGAGGAATCCTTTCACAATATTTAATAAATGCCTAGTTGACAAACTATTCTAAACTTGATACCCTTTTTGGAATAATTTGGAGTTGGGAAATCTCAAAGTAATTAATAACTCTTTGGAGCATGTTCTTTTATTTATCTCTTTTGTATTTCCCAATTCTTTATTTTTCTACTATGGTTGATGTGTTCTTTTGGTGTCCAATAATTTATTTAGAAGTCTTAGACCCACCTTTTTAATTGTGTTACAATTATGTCCCTTCTTTACTTTTCATTTATATAAAACTCCCAAATTTTCATAATCTACTCATAATTTTCACACATTTAATCAGCTAAGTTTTTTTACACTTATTTTTACTCGAAACTCGGCAAAACAATTCAAGACTAATAGTTGTGCATAGTCCAAACTAGTCAACCGAAAAAACCCTTTCATTTCTTTAGTTTTTGCTTTGATCTCTTTGCTTATATATAATTTTGGTTGCAGCATATAGAAGACTTAACAAGTGCACTTGGATCAGTAGACATATCAGCTGTAAAGAACATGGAGGATCCTAAGTTGGTTGTAAAGAACATGGAGGATCCTAAGTTGGTTGAGAAAGTGAATGACTGA
Protein sequence

>MS.gene90428.t1

MAAELKKAADEMNKKKLHGDSSTAEHNNSNMVSSKGGGSSPSDARSCVSSIGDASGSFKEGDVDHEFQSTDQNVAYSAGSYYGYYYPGYGGFYGEQENQGYYVGADAMDFQYPVMQADNGSYVYLMPGYQTGYSSYFPVNTPGVDVQYQVYPPGSVFQQPIGSPGYISPYGELLPSTYSWDSSLTTQDVAQGNRYNELASKPSGRSIFSSQSRTGSGIVSKSVPSSNVSNSSEVKGLPPILDVSSTHVKRNQPKQANKASISGPVLHSDAMPKGSFPVAKFSTYNQGKSGFPYQNNFPNMKATSTKGWVSTEKLKLRNKVNDSLNEQNQGPRTVNAKGTLNSGGNSGDKSVNGDTKIRTDQHNLPDFPTKYDHALFFVIKSYSEDDVHKSIKYDVWASTPNGNKRLDNAFQDAQNRMEEKGSMCPVFLFFSVNASGQFCGVAEMIGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDIPNPQLRHIILENNDHKPVTNSRDTQEIHFPQGIEMLNIFKNYVSRTSILDDFDFYETRQKVMQEKKIRQPMPHTNVQHIEDLTSALGSVDISAVKNMEDPKLVVKNMEDPKLVEKVND