Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066830.t1 | XP_003601798.1 | 97.8 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 1.20E-93 | 352.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066830.t1 | P51413 | 88.0 | 175 | 21 | 0 | 1 | 175 | 1 | 175 | 2.9e-83 | 309.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066830.t1 | G7JC06 | 97.8 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 8.8e-94 | 352.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene066830 | 0.864684 | 1.02E-64 | -1.69E-46 |
| MS.gene049376 | MS.gene066830 | 0.843418 | 1.42E-58 | -1.69E-46 |
| MS.gene051568 | MS.gene066830 | -0.815973 | 7.03E-52 | -1.69E-46 |
| MS.gene051924 | MS.gene066830 | 0.824334 | 8.54E-54 | -1.69E-46 |
| MS.gene051925 | MS.gene066830 | 0.821647 | 3.61E-53 | -1.69E-46 |
| MS.gene051926 | MS.gene066830 | 0.828861 | 7.10E-55 | -1.69E-46 |
| MS.gene051927 | MS.gene066830 | 0.830569 | 2.73E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene066830 | -0.808059 | 3.73E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene066830 | -0.814291 | 1.66E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene066830 | -0.81237 | 4.39E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene066830 | -0.824055 | 9.93E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene066830 | -0.817715 | 2.86E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene066830 | -0.822129 | 2.79E-53 | -1.69E-46 |
| MS.gene054548 | MS.gene066830 | -0.801364 | 9.32E-49 | -1.69E-46 |
| MS.gene05491 | MS.gene066830 | 0.804336 | 2.27E-49 | -1.69E-46 |
| MS.gene055453 | MS.gene066830 | 0.824681 | 7.08E-54 | -1.69E-46 |
| MS.gene055454 | MS.gene066830 | 0.81508 | 1.11E-51 | -1.69E-46 |
| MS.gene055455 | MS.gene066830 | 0.855854 | 4.77E-62 | -1.69E-46 |
| MS.gene055701 | MS.gene066830 | -0.808981 | 2.37E-50 | -1.69E-46 |
| MS.gene05595 | MS.gene066830 | -0.84182 | 3.77E-58 | -1.69E-46 |
| MS.gene057156 | MS.gene066830 | 0.838943 | 2.13E-57 | -1.69E-46 |
| MS.gene05872 | MS.gene066830 | -0.811896 | 5.57E-51 | -1.69E-46 |
| MS.gene060010 | MS.gene066830 | -0.810426 | 1.16E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066830.t1 | MTR_3g085490 | 97.802 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 8.56e-135 | 374 |
| MS.gene066830.t1 | MTR_8g080460 | 97.688 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 1.12e-127 | 356 |
| MS.gene066830.t1 | MTR_3g085490 | 98.137 | 161 | 3 | 0 | 1 | 161 | 1 | 161 | 1.33e-119 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066830.t1 | AT1G67430 | 88.000 | 175 | 21 | 0 | 1 | 175 | 1 | 175 | 1.00e-115 | 326 |
| MS.gene066830.t1 | AT1G27400 | 88.953 | 172 | 19 | 0 | 1 | 172 | 1 | 172 | 3.05e-115 | 325 |
| MS.gene066830.t1 | AT1G67430 | 65.143 | 175 | 17 | 1 | 1 | 175 | 1 | 131 | 1.04e-72 | 215 |
Find 55 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGTTTGTTGCCAAC+TGG | 0.236433 | 3.4:-79867360 | None:intergenic |
| AACATCTTCTAAGTATCTTT+TGG | 0.263817 | 3.4:-79866691 | None:intergenic |
| AACAACGCAATACCTCTTTC+TGG | 0.294555 | 3.4:-79867256 | None:intergenic |
| AAGATACTTAGAAGATGTTT+TGG | 0.295183 | 3.4:+79866695 | MS.gene066830:CDS |
| GGTGGGATTGTCGGGCTCTT+TGG | 0.298164 | 3.4:-79865543 | None:intergenic |
| CTTCTTGTTTGTTGCCAACT+GGG | 0.310845 | 3.4:-79867359 | None:intergenic |
| GTTTGTTGCCAACTGGGTCT+CGG | 0.315567 | 3.4:-79867353 | None:intergenic |
| AACCCTAAGGTCAGCACCTC+TGG | 0.343663 | 3.4:-79865685 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 3.4:+79866742 | MS.gene066830:CDS |
| AGGCCAGAGGTGCTGACCTT+AGG | 0.368932 | 3.4:+79865682 | MS.gene066830:CDS |
| TAGAGTGTCTGTTCTTAGCT+TGG | 0.376754 | 3.4:-79866773 | None:intergenic |
| TGACCTTAGGGTTCATTTCA+AGG | 0.383447 | 3.4:+79865695 | MS.gene066830:CDS |
| AAGGTCAGCACCTCTGGCCT+TGG | 0.384955 | 3.4:-79865679 | None:intergenic |
| TTACATTTGGTGGGATTGTC+GGG | 0.385846 | 3.4:-79865551 | None:intergenic |
| GGCCAGAGGTGCTGACCTTA+GGG | 0.395315 | 3.4:+79865683 | MS.gene066830:CDS |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.397264 | 3.4:+79866741 | MS.gene066830:CDS |
| AGAGTGTCTGTTCTTAGCTT+GGG | 0.404467 | 3.4:-79866772 | None:intergenic |
| GCTAAGAACAGACACTCTAA+TGG | 0.408761 | 3.4:+79866777 | MS.gene066830:CDS |
| TTTGTTGCCAACTGGGTCTC+GGG | 0.429555 | 3.4:-79867352 | None:intergenic |
| GGGAAACAGCGTTTGCCATC+AGG | 0.433818 | 3.4:+79866649 | MS.gene066830:CDS |
| ATTACATTTGGTGGGATTGT+CGG | 0.454131 | 3.4:-79865552 | None:intergenic |
| TCACTTCTAGGTGAAAGGTT+TGG | 0.454273 | 3.4:+79866988 | MS.gene066830:intron |
| CTAAGAACAGACACTCTAAT+GGG | 0.469410 | 3.4:+79866778 | MS.gene066830:CDS |
| GATGGCAAACGCTGTTTCCC+TGG | 0.472125 | 3.4:-79866646 | None:intergenic |
| ATGAATTTAGCTGACTTGAC+AGG | 0.481469 | 3.4:-79866813 | None:intergenic |
| TGAAAGGAATGGCCTGTTTG+TGG | 0.487121 | 3.4:-79866719 | None:intergenic |
| AACAAAGAAGACGTACCTAC+AGG | 0.490498 | 3.4:+79867059 | MS.gene066830:CDS |
| GAAAGGAATGGCCTGTTTGT+GGG | 0.496437 | 3.4:-79866718 | None:intergenic |
| CCTTTCAGACGTTTCTGTCG+TGG | 0.497413 | 3.4:+79866735 | MS.gene066830:CDS |
| ATTGTTCACTTCTAGGTGAA+AGG | 0.499870 | 3.4:+79866983 | MS.gene066830:intron |
| AGACGTACCTACAGGGCTCA+TGG | 0.520971 | 3.4:+79867067 | MS.gene066830:CDS |
| ACTCTAATGGGCAAGGACGC+TGG | 0.524787 | 3.4:+79866790 | MS.gene066830:CDS |
| AGAGAGGAATTACATTTGGT+GGG | 0.528638 | 3.4:-79865560 | None:intergenic |
| TCTCTACGTGTCTCATATCC+AGG | 0.529280 | 3.4:+79867021 | MS.gene066830:CDS |
| GAGAGAGGAATTACATTTGG+TGG | 0.535354 | 3.4:-79865561 | None:intergenic |
| ATCTGTAATTGCAGCAACCA+AGG | 0.554826 | 3.4:+79865662 | MS.gene066830:intron |
| GGTCAGGGGCAACTTCCTGA+TGG | 0.558655 | 3.4:-79866664 | None:intergenic |
| GGAAGAGGCTGTCCAGAAAG+AGG | 0.559016 | 3.4:+79867244 | MS.gene066830:CDS |
| GATTCTTCCATGAGCCCTGT+AGG | 0.559080 | 3.4:-79867074 | None:intergenic |
| TTACCTTGAAATGAACCCTA+AGG | 0.566981 | 3.4:-79865698 | None:intergenic |
| GATACTATCTGAGAAGGAAG+AGG | 0.578357 | 3.4:+79867229 | MS.gene066830:CDS |
| CCACGACAGAAACGTCTGAA+AGG | 0.578584 | 3.4:-79866735 | None:intergenic |
| CTAGGTGAAAGGTTTGGATG+TGG | 0.599987 | 3.4:+79866994 | MS.gene066830:intron |
| TCTGTAGCCCGAGACCCAGT+TGG | 0.601405 | 3.4:+79867345 | MS.gene066830:intron |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.606753 | 3.4:+79866745 | MS.gene066830:CDS |
| CTCTTTGGAGTACTTCACCA+TGG | 0.611437 | 3.4:-79865528 | None:intergenic |
| ACAAAGAAGACGTACCTACA+GGG | 0.613276 | 3.4:+79867060 | MS.gene066830:CDS |
| CGAACTGATACTATCTGAGA+AGG | 0.615825 | 3.4:+79867223 | MS.gene066830:CDS |
| AACAGACACTCTAATGGGCA+AGG | 0.616551 | 3.4:+79866783 | MS.gene066830:CDS |
| ACAGAAACGTCTGAAAGGAA+TGG | 0.620803 | 3.4:-79866730 | None:intergenic |
| AAGTCTCAAGCTGTTCGAAG+TGG | 0.631486 | 3.4:+79867382 | MS.gene066830:CDS |
| AGTATCAGTTCGATGTGGCA+AGG | 0.635093 | 3.4:-79867212 | None:intergenic |
| ATTGCAGCAACCAAGGCCAG+AGG | 0.682613 | 3.4:+79865669 | MS.gene066830:intron |
| GTGGCAAGGAGATGACATGT+AGG | 0.691037 | 3.4:-79867198 | None:intergenic |
| CAGATAGTATCAGTTCGATG+TGG | 0.705561 | 3.4:-79867217 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAATACATATGAA+GGG | - | chr3.4:79866387-79866406 | None:intergenic | 10.0% |
| !! | CTAAAAATAAATACATATGA+AGG | - | chr3.4:79866388-79866407 | None:intergenic | 15.0% |
| !!! | AATTAACTTTTTTATCCAAA+AGG | - | chr3.4:79866116-79866135 | None:intergenic | 15.0% |
| !! | ACAAAATGCAATTTATCTAT+AGG | - | chr3.4:79866061-79866080 | None:intergenic | 20.0% |
| !! | GATTAATTTAACCTAATTTG+TGG | + | chr3.4:79865634-79865653 | MS.gene066830:intron | 20.0% |
| !! | TATTATTCATAATCTTGTCA+AGG | + | chr3.4:79865900-79865919 | MS.gene066830:intron | 20.0% |
| !!! | CGGTGTTTTTTTTTTTTTTT+TGG | + | chr3.4:79867172-79867191 | MS.gene066830:intron | 20.0% |
| ! | ATTAGTTGAAAATGGTCATT+TGG | + | chr3.4:79866347-79866366 | MS.gene066830:intron | 25.0% |
| ! | CAATTTATCTATAGGACATA+GGG | - | chr3.4:79866053-79866072 | None:intergenic | 25.0% |
| ! | GCATTCTTATACTTATATAC+TGG | + | chr3.4:79867149-79867168 | MS.gene066830:intron | 25.0% |
| ! | TTCTTATACTTATATACTGG+CGG | + | chr3.4:79867152-79867171 | MS.gene066830:intron | 25.0% |
| !! | AACATCTTCTAAGTATCTTT+TGG | - | chr3.4:79866694-79866713 | None:intergenic | 25.0% |
| !! | AAGATACTTAGAAGATGTTT+TGG | + | chr3.4:79866695-79866714 | MS.gene066830:CDS | 25.0% |
| !! | ATCAGTAGATTAGTTGAAAA+TGG | + | chr3.4:79866339-79866358 | MS.gene066830:intron | 25.0% |
| !! | TATTCTTATTTGTGTTTGGA+TGG | + | chr3.4:79867112-79867131 | MS.gene066830:intron | 25.0% |
| !!! | ACTTTTTTATCCAAAAGGTA+AGG | - | chr3.4:79866111-79866130 | None:intergenic | 25.0% |
| AAGTCATAAGTTCTCACTAA+CGG | - | chr3.4:79865962-79865981 | None:intergenic | 30.0% | |
| ACAGATCAAAACCACAAATT+AGG | - | chr3.4:79865648-79865667 | None:intergenic | 30.0% | |
| AGTGGAGATGAAAATTCAAA+AGG | - | chr3.4:79867288-79867307 | None:intergenic | 30.0% | |
| CTAAGAACAAAAACAACAAC+AGG | - | chr3.4:79866579-79866598 | None:intergenic | 30.0% | |
| GCAATTTATCTATAGGACAT+AGG | - | chr3.4:79866054-79866073 | None:intergenic | 30.0% | |
| GTAGAGATAGATCATGATAT+AGG | + | chr3.4:79865750-79865769 | MS.gene066830:intron | 30.0% | |
| TAGCTGATCTAGTGAATTTA+CGG | + | chr3.4:79865824-79865843 | MS.gene066830:intron | 30.0% | |
| TTGTTTGATTGTTCACTTCT+AGG | + | chr3.4:79866976-79866995 | MS.gene066830:intron | 30.0% | |
| ! | ATTTTCATCTCCACTCTAAA+AGG | + | chr3.4:79867293-79867312 | MS.gene066830:intron | 30.0% |
| ! | GCACTATTCTTATTTGTGTT+TGG | + | chr3.4:79867108-79867127 | MS.gene066830:intron | 30.0% |
| !! | TTTTCATCTCCACTCTAAAA+GGG | + | chr3.4:79867294-79867313 | MS.gene066830:intron | 30.0% |
| !!! | TTCTAAGTATCTTTTGGCTT+TGG | - | chr3.4:79866688-79866707 | None:intergenic | 30.0% |
| AGAGAGGAATTACATTTGGT+GGG | - | chr3.4:79865563-79865582 | None:intergenic | 35.0% | |
| AGCTGATCTAGTGAATTTAC+GGG | + | chr3.4:79865825-79865844 | MS.gene066830:intron | 35.0% | |
| ATACATATGAAGGGCAAGTT+TGG | - | chr3.4:79866378-79866397 | None:intergenic | 35.0% | |
| ATCGAGAGAGGAATTACATT+TGG | - | chr3.4:79865567-79865586 | None:intergenic | 35.0% | |
| ATGAAAGAAGAAATCGAGAG+AGG | - | chr3.4:79865579-79865598 | None:intergenic | 35.0% | |
| ATTGTTCACTTCTAGGTGAA+AGG | + | chr3.4:79866983-79867002 | MS.gene066830:intron | 35.0% | |
| CAAACATAAGCCAATCCAAA+AGG | - | chr3.4:79865852-79865871 | None:intergenic | 35.0% | |
| CTAAGAACAGACACTCTAAT+GGG | + | chr3.4:79866778-79866797 | MS.gene066830:CDS | 35.0% | |
| TAAGCACTAATGAGAATCGT+TGG | - | chr3.4:79866318-79866337 | None:intergenic | 35.0% | |
| TATAGGACATAGGGTTCATT+TGG | - | chr3.4:79866044-79866063 | None:intergenic | 35.0% | |
| TGCAGTTTGATACGTTTAAC+TGG | + | chr3.4:79866933-79866952 | MS.gene066830:intron | 35.0% | |
| TTACCTTGAAATGAACCCTA+AGG | - | chr3.4:79865701-79865720 | None:intergenic | 35.0% | |
| TTATTTCCCTATGCTCTCAA+AGG | - | chr3.4:79866250-79866269 | None:intergenic | 35.0% | |
| ! | AACTATCCTTTGAGAGCATA+GGG | + | chr3.4:79866241-79866260 | MS.gene066830:intron | 35.0% |
| ! | ATTACATTTGGTGGGATTGT+CGG | - | chr3.4:79865555-79865574 | None:intergenic | 35.0% |
| ! | TTATAACCTGCCTTACCTTT+TGG | + | chr3.4:79866098-79866117 | MS.gene066830:intron | 35.0% |
| ! | TTTTATCCAAAAGGTAAGGC+AGG | - | chr3.4:79866107-79866126 | None:intergenic | 35.0% |
| !! | ATGAATTTAGCTGACTTGAC+AGG | - | chr3.4:79866816-79866835 | None:intergenic | 35.0% |
| !! | GATACAATACCCTTTTAGAG+TGG | - | chr3.4:79867306-79867325 | None:intergenic | 35.0% |
| !!! | TCAATTTTGGTGGACTAGTT+TGG | + | chr3.4:79866533-79866552 | MS.gene066830:intron | 35.0% |
| AACAAAGAAGACGTACCTAC+AGG | + | chr3.4:79867059-79867078 | MS.gene066830:CDS | 40.0% | |
| AACAACGCAATACCTCTTTC+TGG | - | chr3.4:79867259-79867278 | None:intergenic | 40.0% | |
| ACAAAGAAGACGTACCTACA+GGG | + | chr3.4:79867060-79867079 | MS.gene066830:CDS | 40.0% | |
| ACAGAAACGTCTGAAAGGAA+TGG | - | chr3.4:79866733-79866752 | None:intergenic | 40.0% | |
| ACCATCATGGCAAATCAAGT+GGG | - | chr3.4:79866453-79866472 | None:intergenic | 40.0% | |
| ATCTGTAATTGCAGCAACCA+AGG | + | chr3.4:79865662-79865681 | MS.gene066830:intron | 40.0% | |
| CAGATAGTATCAGTTCGATG+TGG | - | chr3.4:79867220-79867239 | None:intergenic | 40.0% | |
| CGAACTGATACTATCTGAGA+AGG | + | chr3.4:79867223-79867242 | MS.gene066830:CDS | 40.0% | |
| GACATAGGGTTCATTTGGAT+TGG | - | chr3.4:79866039-79866058 | None:intergenic | 40.0% | |
| GAGAATCGTTGGAAGACATA+TGG | - | chr3.4:79866307-79866326 | None:intergenic | 40.0% | |
| GAGAGAGGAATTACATTTGG+TGG | - | chr3.4:79865564-79865583 | None:intergenic | 40.0% | |
| GATACTATCTGAGAAGGAAG+AGG | + | chr3.4:79867229-79867248 | MS.gene066830:CDS | 40.0% | |
| GCTAAGAACAGACACTCTAA+TGG | + | chr3.4:79866777-79866796 | MS.gene066830:CDS | 40.0% | |
| TCACTTCTAGGTGAAAGGTT+TGG | + | chr3.4:79866988-79867007 | MS.gene066830:intron | 40.0% | |
| TCCACCAAAATTGACACCAA+GGG | - | chr3.4:79866527-79866546 | None:intergenic | 40.0% | |
| TGACCTTAGGGTTCATTTCA+AGG | + | chr3.4:79865695-79865714 | MS.gene066830:CDS | 40.0% | |
| ! | AGAGTGTCTGTTCTTAGCTT+GGG | - | chr3.4:79866775-79866794 | None:intergenic | 40.0% |
| ! | AGTGAATTTACGGGTCCTTT+TGG | + | chr3.4:79865834-79865853 | MS.gene066830:intron | 40.0% |
| ! | ATTTACGGGTCCTTTTGGAT+TGG | + | chr3.4:79865839-79865858 | MS.gene066830:intron | 40.0% |
| ! | ATTTTACTGTGCAGAACACC+AGG | + | chr3.4:79866628-79866647 | MS.gene066830:intron | 40.0% |
| ! | CTTCTTGTTTGTTGCCAACT+GGG | - | chr3.4:79867362-79867381 | None:intergenic | 40.0% |
| ! | GAACTATCCTTTGAGAGCAT+AGG | + | chr3.4:79866240-79866259 | MS.gene066830:intron | 40.0% |
| ! | GGCAAATCAAGTGGGTTTAA+AGG | - | chr3.4:79866445-79866464 | None:intergenic | 40.0% |
| ! | TAGAGTGTCTGTTCTTAGCT+TGG | - | chr3.4:79866776-79866795 | None:intergenic | 40.0% |
| ! | TCTTCTTGTTTGTTGCCAAC+TGG | - | chr3.4:79867363-79867382 | None:intergenic | 40.0% |
| ! | TTACATTTGGTGGGATTGTC+GGG | - | chr3.4:79865554-79865573 | None:intergenic | 40.0% |
| ! | TTTTACTGTGCAGAACACCA+GGG | + | chr3.4:79866629-79866648 | MS.gene066830:intron | 40.0% |
| !! | GTTTTTGAGCTTGATTGACC+TGG | - | chr3.4:79867042-79867061 | None:intergenic | 40.0% |
| !!! | AGTATCTTTTGGCTTTGGTC+AGG | - | chr3.4:79866683-79866702 | None:intergenic | 40.0% |
| !!! | GTATCTTTTGGCTTTGGTCA+GGG | - | chr3.4:79866682-79866701 | None:intergenic | 40.0% |
| !!! | TATCTTTTGGCTTTGGTCAG+GGG | - | chr3.4:79866681-79866700 | None:intergenic | 40.0% |
| !!! | TTTCCCCTTGGTGTCAATTT+TGG | + | chr3.4:79866520-79866539 | MS.gene066830:intron | 40.0% |
| AACAAACCTGAGACCTTTGG+AGG | - | chr3.4:79866502-79866521 | None:intergenic | 45.0% | |
| AAGTCTCAAGCTGTTCGAAG+TGG | + | chr3.4:79867382-79867401 | MS.gene066830:CDS | 45.0% | |
| AGTATCAGTTCGATGTGGCA+AGG | - | chr3.4:79867215-79867234 | None:intergenic | 45.0% | |
| CACCATCATGGCAAATCAAG+TGG | - | chr3.4:79866454-79866473 | None:intergenic | 45.0% | |
| CCACCAAAATTGACACCAAG+GGG | - | chr3.4:79866526-79866545 | None:intergenic | 45.0% | |
| CTAGGTGAAAGGTTTGGATG+TGG | + | chr3.4:79866994-79867013 | MS.gene066830:intron | 45.0% | |
| GAAAGGAATGGCCTGTTTGT+GGG | - | chr3.4:79866721-79866740 | None:intergenic | 45.0% | |
| GATCAGCTATTCTGACAGCT+CGG | - | chr3.4:79865813-79865832 | None:intergenic | 45.0% | |
| GGAAACAAACCTGAGACCTT+TGG | - | chr3.4:79866505-79866524 | None:intergenic | 45.0% | |
| GTCCACCAAAATTGACACCA+AGG | - | chr3.4:79866528-79866547 | None:intergenic | 45.0% | |
| TCTCTACGTGTCTCATATCC+AGG | + | chr3.4:79867021-79867040 | MS.gene066830:CDS | 45.0% | |
| TGAAAGGAATGGCCTGTTTG+TGG | - | chr3.4:79866722-79866741 | None:intergenic | 45.0% | |
| ! | AACAGACACTCTAATGGGCA+AGG | + | chr3.4:79866783-79866802 | MS.gene066830:CDS | 45.0% |
| !! | ACCCACTTGATTTGCCATGA+TGG | + | chr3.4:79866449-79866468 | MS.gene066830:intron | 45.0% |
| !! | TGCCATGATGGTGTTGACTT+GGG | + | chr3.4:79866461-79866480 | MS.gene066830:intron | 45.0% |
| !! | TTGCCATGATGGTGTTGACT+TGG | + | chr3.4:79866460-79866479 | MS.gene066830:intron | 45.0% |
| !!! | AGATGTTTTGGCCCACAAAC+AGG | + | chr3.4:79866707-79866726 | MS.gene066830:CDS | 45.0% |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr3.4:79866741-79866760 | MS.gene066830:CDS | 50.0% | |
| CCACGACAGAAACGTCTGAA+AGG | - | chr3.4:79866738-79866757 | None:intergenic | 50.0% | |
| CCTTTCAGACGTTTCTGTCG+TGG | + | chr3.4:79866735-79866754 | MS.gene066830:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr3.4:79866742-79866761 | MS.gene066830:CDS | 50.0% | |
| GATTCTTCCATGAGCCCTGT+AGG | - | chr3.4:79867077-79867096 | None:intergenic | 50.0% | |
| GTGGCAAGGAGATGACATGT+AGG | - | chr3.4:79867201-79867220 | None:intergenic | 50.0% | |
| TTTGTTGCCAACTGGGTCTC+GGG | - | chr3.4:79867355-79867374 | None:intergenic | 50.0% | |
| ! | GTCTCAGGTTTGTTTCCCCT+TGG | + | chr3.4:79866508-79866527 | MS.gene066830:intron | 50.0% |
| ! | GTTTGTTGCCAACTGGGTCT+CGG | - | chr3.4:79867356-79867375 | None:intergenic | 50.0% |
| !! | GCCATGATGGTGTTGACTTG+GGG | + | chr3.4:79866462-79866481 | MS.gene066830:intron | 50.0% |
| !!! | CCCCTTGGTGTCAATTTTGG+TGG | + | chr3.4:79866523-79866542 | MS.gene066830:intron | 50.0% |
| AACCCTAAGGTCAGCACCTC+TGG | - | chr3.4:79865688-79865707 | None:intergenic | 55.0% | |
| AGACGTACCTACAGGGCTCA+TGG | + | chr3.4:79867067-79867086 | MS.gene066830:CDS | 55.0% | |
| AGTGCTCCTCCAAAGGTCTC+AGG | + | chr3.4:79866493-79866512 | MS.gene066830:intron | 55.0% | |
| ATTGCAGCAACCAAGGCCAG+AGG | + | chr3.4:79865669-79865688 | MS.gene066830:intron | 55.0% | |
| GCCCCAAGTCAACACCATCA+TGG | - | chr3.4:79866466-79866485 | None:intergenic | 55.0% | |
| GGAAGAGGCTGTCCAGAAAG+AGG | + | chr3.4:79867244-79867263 | MS.gene066830:CDS | 55.0% | |
| GGGAAACAGCGTTTGCCATC+AGG | + | chr3.4:79866649-79866668 | MS.gene066830:CDS | 55.0% | |
| ! | ACTCTAATGGGCAAGGACGC+TGG | + | chr3.4:79866790-79866809 | MS.gene066830:CDS | 55.0% |
| ! | GATGGCAAACGCTGTTTCCC+TGG | - | chr3.4:79866649-79866668 | None:intergenic | 55.0% |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr3.4:79866745-79866764 | MS.gene066830:CDS | 55.0% |
| !! | ATGGTGTTGACTTGGGGCCT+TGG | + | chr3.4:79866468-79866487 | MS.gene066830:intron | 55.0% |
| !! | CTTGGAGAGTGCTCCTCCAA+AGG | + | chr3.4:79866486-79866505 | MS.gene066830:intron | 55.0% |
| !! | CTTTGGAGGAGCACTCTCCA+AGG | - | chr3.4:79866488-79866507 | None:intergenic | 55.0% |
| AAGGTCAGCACCTCTGGCCT+TGG | - | chr3.4:79865682-79865701 | None:intergenic | 60.0% | |
| GGTCAGGGGCAACTTCCTGA+TGG | - | chr3.4:79866667-79866686 | None:intergenic | 60.0% | |
| GGTGGGATTGTCGGGCTCTT+TGG | - | chr3.4:79865546-79865565 | None:intergenic | 60.0% | |
| TCTGTAGCCCGAGACCCAGT+TGG | + | chr3.4:79867345-79867364 | MS.gene066830:intron | 60.0% | |
| !! | AGGCCAGAGGTGCTGACCTT+AGG | + | chr3.4:79865682-79865701 | MS.gene066830:CDS | 60.0% |
| !! | GGCCAGAGGTGCTGACCTTA+GGG | + | chr3.4:79865683-79865702 | MS.gene066830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 79865530 | 79867417 | 79865530 | ID=MS.gene066830 |
| chr3.4 | mRNA | 79865530 | 79867417 | 79865530 | ID=MS.gene066830.t1;Parent=MS.gene066830 |
| chr3.4 | exon | 79865530 | 79865569 | 79865530 | ID=MS.gene066830.t1.exon1;Parent=MS.gene066830.t1 |
| chr3.4 | CDS | 79865530 | 79865569 | 79865530 | ID=cds.MS.gene066830.t1;Parent=MS.gene066830.t1 |
| chr3.4 | exon | 79865676 | 79865716 | 79865676 | ID=MS.gene066830.t1.exon2;Parent=MS.gene066830.t1 |
| chr3.4 | CDS | 79865676 | 79865716 | 79865676 | ID=cds.MS.gene066830.t1;Parent=MS.gene066830.t1 |
| chr3.4 | exon | 79866642 | 79866872 | 79866642 | ID=MS.gene066830.t1.exon3;Parent=MS.gene066830.t1 |
| chr3.4 | CDS | 79866642 | 79866872 | 79866642 | ID=cds.MS.gene066830.t1;Parent=MS.gene066830.t1 |
| chr3.4 | exon | 79866998 | 79867100 | 79866998 | ID=MS.gene066830.t1.exon4;Parent=MS.gene066830.t1 |
| chr3.4 | CDS | 79866998 | 79867100 | 79866998 | ID=cds.MS.gene066830.t1;Parent=MS.gene066830.t1 |
| chr3.4 | exon | 79867198 | 79867265 | 79867198 | ID=MS.gene066830.t1.exon5;Parent=MS.gene066830.t1 |
| chr3.4 | CDS | 79867198 | 79867265 | 79867198 | ID=cds.MS.gene066830.t1;Parent=MS.gene066830.t1 |
| chr3.4 | exon | 79867352 | 79867417 | 79867352 | ID=MS.gene066830.t1.exon6;Parent=MS.gene066830.t1 |
| chr3.4 | CDS | 79867352 | 79867417 | 79867352 | ID=cds.MS.gene066830.t1;Parent=MS.gene066830.t1 |
| Gene Sequence |
| Protein sequence |
