AlfalfaGEDB | MS.gene90387

M. sativa cultivar XinJiangDaYe / MS.gene90387

KEGG: K20102
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF04146.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90387.t1	XP_003595919.1	98.3	578	10	0	1	578	1	578	0.00E+00	1099.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90387.t1	Q9LJE5	38.8	497	241	15	79	544	144	608	4.3e-72	273.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90387.t1	G7IT77	98.3	578	10	0	1	578	1	578	0.0e+00	1099.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051122	MS.gene90387	0.813175	2.92E-51	-1.69E-46
MS.gene055505	MS.gene90387	0.822364	2.46E-53	-1.69E-46
MS.gene055701	MS.gene90387	0.802665	5.04E-49	-1.69E-46
MS.gene060010	MS.gene90387	0.808118	3.62E-50	-1.69E-46
MS.gene060850	MS.gene90387	0.822689	2.07E-53	-1.69E-46
MS.gene060851	MS.gene90387	0.827425	1.58E-54	-1.69E-46
MS.gene060852	MS.gene90387	0.829426	5.18E-55	-1.69E-46

Showing 1 to 7 of 7 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene030136	MS.gene90387	PPI
MS.gene058307	MS.gene90387	PPI
MS.gene26804	MS.gene90387	PPI
MS.gene55918	MS.gene90387	PPI
MS.gene67868	MS.gene90387	PPI
MS.gene68609	MS.gene90387	PPI
MS.gene90387	MS.gene00083	PPI

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90387.t1	MTR_2g063460	96.633	594	10	1	1	594	1	584	0.0	1182
MS.gene90387.t1	MTR_2g063460	96.296	594	10	2	1	594	1	582	0.0	1173
MS.gene90387.t1	MTR_2g032660	42.115	520	227	18	70	544	46	536	5.23e-104	329
MS.gene90387.t1	MTR_4g123630	42.664	518	234	13	70	547	11	505	2.48e-103	326
MS.gene90387.t1	MTR_4g005110	64.783	230	75	2	318	545	337	562	1.04e-95	306
MS.gene90387.t1	MTR_8g088390	50.502	299	116	8	276	548	234	526	4.95e-85	277
MS.gene90387.t1	MTR_8g088390	50.502	299	116	8	276	548	299	591	1.05e-84	278
MS.gene90387.t1	MTR_2g005840	62.842	183	68	0	360	542	237	419	7.32e-83	268
MS.gene90387.t1	MTR_2g005840	62.842	183	68	0	360	542	268	450	2.61e-82	267
MS.gene90387.t1	MTR_7g085500	57.820	211	79	2	357	567	415	615	8.90e-80	265

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90387.t1	AT1G79270	44.877	488	207	11	91	568	63	498	6.80e-123	372
MS.gene90387.t1	AT1G79270	44.877	488	207	11	91	568	63	498	6.80e-123	372
MS.gene90387.t1	AT1G79270	44.877	488	207	11	91	568	63	498	6.80e-123	372
MS.gene90387.t1	AT1G79270	44.877	488	207	11	91	568	78	513	7.89e-123	373
MS.gene90387.t1	AT1G48110	39.412	510	246	13	71	546	13	493	1.46e-98	313
MS.gene90387.t1	AT1G48110	39.412	510	246	13	71	546	13	493	1.46e-98	313
MS.gene90387.t1	AT3G13060	54.007	287	107	7	306	573	294	574	1.55e-92	297
MS.gene90387.t1	AT3G13060	54.007	287	107	7	306	573	294	574	1.55e-92	297
MS.gene90387.t1	AT3G13060	57.031	256	88	4	306	545	316	565	2.03e-92	297
MS.gene90387.t1	AT3G13060	57.031	256	88	4	306	545	306	555	2.50e-92	297

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

Find 135 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTACTTTAAACTCTGG+AGG	0.617094	2.3:-31067479	MS.gene90387:CDS
AAATAGTAGAGACACTCAAG+AGG	0.657180	2.3:-31066880	MS.gene90387:intron
AAGCAACAAGTACCAAGGGA+TGG	0.592367	2.3:-31067586	MS.gene90387:CDS
AAGGTTTCTTCAAAGGGTGG+TGG	0.558132	2.3:-31069492	MS.gene90387:CDS
ACACATGATCTTGCATCAGA+TGG	0.625382	2.3:+31069462	None:intergenic
ACATACAATCAAGGAAAGAG+TGG	0.582689	2.3:-31067641	MS.gene90387:CDS
ACCACACAAGATGTAGCACA+AGG	0.668664	2.3:-31068172	MS.gene90387:CDS
ACCGAAAAGAAAAGGAATAC+GGG	0.578211	2.3:+31067215	None:intergenic
ACGGATATTTCCCTGTCAAA+TGG	0.501338	2.3:-31066977	MS.gene90387:CDS
ACTTCCATCAACATACTCAT+GGG	0.589217	2.3:-31068206	MS.gene90387:CDS

Showing 1 to 10 of 135 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGATCATGTGTATCATCAAT+AGG	-	chr2.3:31066288-31066307	MS.gene90387:intron	30.0%
AGGGAATCGTTATAATGAAT+TGG	-	chr2.3:31067586-31067605	MS.gene90387:CDS	30.0%
CAACCACAATTATGCAAAAA+TGG	+	chr2.3:31069284-31069303	None:intergenic	30.0%
GAAGAAACATCTAATATTGG+TGG	+	chr2.3:31067728-31067747	None:intergenic	30.0%
GGAACTATATATTGAACTGT+TGG	-	chr2.3:31067924-31067943	MS.gene90387:intron	30.0%
GTAAAATCAAACCTGTACAT+TGG	+	chr2.3:31069135-31069154	None:intergenic	30.0%
TAATCATTCTACCGTAAGAA+AGG	+	chr2.3:31066659-31066678	None:intergenic	30.0%
TACCGAAAAGAAAAGGAATA+CGG	+	chr2.3:31068527-31068546	None:intergenic	30.0%
TATTCTGCTGGTAGTTATTA+TGG	-	chr2.3:31066381-31066400	MS.gene90387:intron	30.0%
TCATATTTGGTTGGAAAATC+AGG	+	chr2.3:31068346-31068365	None:intergenic	30.0%

Showing 1 to 10 of 246 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	31065853	31069907	31065853	ID=MS.gene90387
chr2.3	mRNA	31065853	31069907	31065853	ID=MS.gene90387.t1;Parent=MS.gene90387
chr2.3	exon	31069886	31069907	31069886	ID=MS.gene90387.t1.exon1;Parent=MS.gene90387.t1
chr2.3	CDS	31069886	31069907	31069886	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1
chr2.3	exon	31069685	31069755	31069685	ID=MS.gene90387.t1.exon2;Parent=MS.gene90387.t1
chr2.3	CDS	31069685	31069755	31069685	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1
chr2.3	exon	31069343	31069511	31069343	ID=MS.gene90387.t1.exon3;Parent=MS.gene90387.t1
chr2.3	CDS	31069343	31069511	31069343	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1
chr2.3	exon	31069002	31069078	31069002	ID=MS.gene90387.t1.exon4;Parent=MS.gene90387.t1
chr2.3	CDS	31069002	31069078	31069002	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1
chr2.3	exon	31067973	31068407	31067973	ID=MS.gene90387.t1.exon5;Parent=MS.gene90387.t1
chr2.3	CDS	31067973	31068407	31067973	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1
chr2.3	exon	31067217	31067735	31067217	ID=MS.gene90387.t1.exon6;Parent=MS.gene90387.t1
chr2.3	CDS	31067217	31067735	31067217	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1
chr2.3	exon	31066881	31067093	31066881	ID=MS.gene90387.t1.exon7;Parent=MS.gene90387.t1
chr2.3	CDS	31066881	31067093	31066881	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1
chr2.3	exon	31066618	31066770	31066618	ID=MS.gene90387.t1.exon8;Parent=MS.gene90387.t1
chr2.3	CDS	31066618	31066770	31066618	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1
chr2.3	exon	31065853	31065978	31065853	ID=MS.gene90387.t1.exon9;Parent=MS.gene90387.t1
chr2.3	CDS	31065853	31065978	31065853	ID=cds.MS.gene90387.t1;Parent=MS.gene90387.t1

Gene Sequence

>MS.gene90387

ATGGCTGCTGAATTGAAAAAAGGTATTTGTTTTCTTTGTTCTTCTTGTTTATTTTTTGGTTTAGATTTAAATTTTATTTCAATTTGATTATGATTTGAATATTTTGATTTTTTTTTTAATAAAAATGAGATTTTTACTGTGTTTTTTTACAGCTGCAGATGAAATGAATAAGAAGAAGCTGCATGGTGATTCTTCAACAGCTGAACATAATAATTCCAACATGGTAAGCTTGCATGTGATTTCTAAATTTTTATTTTATTTTTGTTTTATTTTTTTTATATTTTGCGGCTTAATTTTGAATTTTGAAATTAACTGTTTCATTAGTTATATGCATGAAACTTGAAGAATTACATGTTTTCTTATTGTATTTTTGGATTTGTTGTATGTTATGTTAAGGTTTCTTCAAAGGGTGGTGGAAGTTCACCATCTGATGCAAGATCATGTGTATCATCAATAGGAGATGCTTCTGGTAGTTTTAAAGAAGGCGATGTTGATCATGAATTCCAATCCACTGATCAGAATGTTGCTTATTCTGCTGGTAGTTATTATGGATATTACTATCCAGGTTAGCTTCCCTCCCATGGTTCCCTATTCGTCAGTGTTATCAATCGCAGATCGCAGAAACTAGCAGTTTGTTCAAATTATGATATGCTATATCACAGTTGTTGATGCTATTTGACAACAGTTTGTTTAAAATAGAGAACAGTAGCGATTTGTTCAGATTCCGCTATGCGGTAGCGTTAATGTGGCTGCTATTTGACAACACTGCTATTCGTTTATGTTGATTGTATATTTATGTTTTTCCTTTCTTACGGTAGAATGATTACAGGTTATGGTGGATTTTATGGAGAGCAAGAAAATCAAGGATATTATGTCGGCGCTGATGCTATGGATTTTCAGTATCCTGTAAGTTTCTTGAGCTGGTTTATGGTTTTTTTGTCATGATAATTGTGTTATTATGGTTCAGTCTTTCTATGTAGTTGCCTTGTTGCATATCTGGTCAATTCAGTCTATGCATTTGATGCCTGTATAAATACTTGAATCTGATAATTTGCATTGCATTAGGCAAGTCTTTAGAATCATATTCCATTGTTTCATGTTGTTGTGAGAAACATGCATGTGTCTCAAAGAATCGTATTCTTTAAGCATATATCTTCAGAAAGGGTTGAATAGAAAATAAAACTGTAATGATGATGTATAATGTTTTTTAGCACATTTTGAATTCTGAAATAAATTTGGGATTGGCTAATTTTGGCTTGAAAATAACATGTTAATAAAAGGCTTCATTCATATTGCATTACACATGAAAATGGTTAATATTTTAAACTACTATTTACCCGACATCATCTCTGATGTCCTGTAACATTCAAGGAAAAAATGTGGCTAGTAAATATGATTTTATGAAATGATAAGAATTCATTATGCAGACATATACTTGATCTCTCATATGTTCTACAACATATATATGTAAATATCTAAATTTTTGTTGGTTTTATTTAGGTCATGCAAGCAGATAATGGATCTTATGTCTATCTCATGCCAGGATATCAGACTGGCTACTCTTCATACTTTCCTGTGAACACACCTGGTGTCGATGTCCAGTATCAGGTTTACCCTCCTGGTTCCGTCTTTCAACAACCAATTGGATCCCCTGGCTATATTTCACCTTATGGTGAGTTACTTCCATCAACATACTCATGGGATTCATCTTTAACCACACAAGATGTAGCACAAGGGAATCGTTATAATGAATTGGCCAGTAAACCGAGTGGTAGATCGATCTTTTCTTCGCAGAGTCGTACTGGCAGTGGTATTGTGTCAAAGTCTGTGCCCTCATCTAATGTGAGCAACTCATCAGAAGTGAAGGGTTTGCCACCAATATTAGATGTTTCTTCAACACATGTTAAGCGCAACCAGCCAAAACAAGCAAACAAGGTAACCTTACTTCCTCCGTTCTGTTTTAACTATTGTTTTTGTTCCTGTTTATTTGTCGCTGTCTAAGTTCAATGCAATATTAACTATTGTTTTTTCGATATATGCTTACCTTATAATTTTAGAAAGAGAAATAAGTGGAACTATATATTGAACTGTTGGGGATTTCGTAGGAAAACAACAAATAATTTCATCAAAAGTTAAATTAGATTATTCTAAATAGTTTGTGGTGTTTTTCAGGCATCCATTTCTGGTCCTGTTCTCCATTCAGATGCAATGCCAAAGGGTTCTTTTCCCGTCGCAAAGTTTTCTACATACAATCAAGGAAAGAGTGGGTTCCCCTATCAAAACAACTTTCCTAATATGAAAGCAACAAGTACCAAGGGATGGGTTAGTACTGAGAAGCTGAAACTCAGAAACAAGGTTAATGATTCACTTAATGAGCAGAATCAAGGTCCTAGAACAGTTAATGCAAAAGGTACTTTAAACTCTGGAGGTAATTCTGGAGATAAGAGTGTCAATGGTGACACCAAAATCAGGACAGATCAACATAACCTTCCTGATTTTCCAACCAAATATGATCATGCACTTTTCTTCGTCATTAAATCGTACAGTGAAGATGATGTTCATAAGAGCATCAAGTACGATGTATGGGCGAGTACACCTAATGGCAATAAGAGGCTCGACAATGCATTTCAGGATGCACAGAATCGAATGGAAGAGAAAGGAAGCATGTGTCCCGTATTCCTTTTCTTTTCGGTATGCTATCAAGTTCAATCTCTGTTCTGTTAAGACCTACGGCCCGTTTGTGTTTTATTTGCTCATTTATTTATCTTAGAAAAATACGACTCACATCAGTGTTTTGATAATTGTTGAGTTCAGGTCAACGCTAGTGGTCAATTTTGTGGAGTAGCCGAGATGATTGGACGAGTGGATTTCAACAAAAGTATGGATTTCTGGCAGCAAGATAAATGGAACGGATATTTCCCTGTCAAATGGCACATTATAAAAGATATTCCAAATCCTCAGCTACGGCATATTATCCTCGAGAATAATGATCACAAGCCTGTAACAAATAGTAGAGACACTCAAGAGGTTTGCATTTTTTTAACATTCTATTAAAGCAACTGTTTACAGAAATGTCCTAGTTATTTCTTCTGTATCTTCACTATTGTGTTAATTGTGTTAATGTTTCGACTTTCCAGATTCATTTTCCGCAAGGTATTGAAATGCTCAACATTTTCAAAAACTATGTATCGAGAACATCGATATTGGATGATTTTGATTTTTACGAAACCCGTCAGAAGGTCATGCAAGAGAAGAAAATAAGACAACCTATGCCACATACCAATGTACAGGTTTGATTTTACACTTGTACCTTGTTCTTATTCCAAAGTTCTTACTTCTTACTAATGATAGCACTAGCACTAGCACATATTGATTCCAATGAATTCTTTTTTGACATTATTGATGGATGAGTGCATGTGATTGTGGGACCATTTTTGCATAATTGTGGTTGGAGGAATCCTTTCACAATATTTAATAAATGCCTAGTTGACAAACTATTCTAAACTTGATACCCTTTTTGGAATAATTTGGAGTTGGGAAATCTCAAAGTAATTAATAACTCTTTGGAGCATGTTCTTTTATTTATCTCTTTTGTATTTCCCAATTCTTTATTTTTCTACTATGGTTGATGTGTTCTTTTGGTGTCCAATAATTTATTTAGAAGTCTTAGACCCACCTTTTTAATTGTGTTACAATTATGTCCCTTCTTTACTTTTCATTTATATAAAACTCCCAAATTTTCATAATCTACTCATAATTTTCACACATTTAATCAGCTAAGTTTTTTTACACTTATTTTTACTCGAAACTCGGCAAAACAATTCAAGACTAATAGTTGTGCATAGTCCAAACTAGTCCAACCGAAAAAACCCTTTCATTTCTTTAGTTTTTGCTTTGATCTCTTTGCTTATATATAATTTTGGTTGCAGCATATAGAAGACTTAACAAGTGCACTTGGATCAGTAGACATATCAGCTGTAAAGAACATGGAGGATCCTAAGTTGGTTGTAAAGAACATGGAGGATCCTAAGTTGGTTGAGAAAGTGAATGACTGA

Protein sequence

>MS.gene90387.t1

MAAELKKAADEMNKKKLHGDSSTAEHNNSNMVSSKGGGSSPSDARSCVSSIGDASGSFKEGDVDHEFQSTDQNVAYSAGSYYGYYYPGYGGFYGEQENQGYYVGADAMDFQYPVMQADNGSYVYLMPGYQTGYSSYFPVNTPGVDVQYQVYPPGSVFQQPIGSPGYISPYGELLPSTYSWDSSLTTQDVAQGNRYNELASKPSGRSIFSSQSRTGSGIVSKSVPSSNVSNSSEVKGLPPILDVSSTHVKRNQPKQANKASISGPVLHSDAMPKGSFPVAKFSTYNQGKSGFPYQNNFPNMKATSTKGWVSTEKLKLRNKVNDSLNEQNQGPRTVNAKGTLNSGGNSGDKSVNGDTKIRTDQHNLPDFPTKYDHALFFVIKSYSEDDVHKSIKYDVWASTPNGNKRLDNAFQDAQNRMEEKGSMCPVFLFFSVNASGQFCGVAEMIGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDIPNPQLRHIILENNDHKPVTNSRDTQEIHFPQGIEMLNIFKNYVSRTSILDDFDFYETRQKVMQEKKIRQPMPHTNVQHIEDLTSALGSVDISAVKNMEDPKLVVKNMEDPKLVEKVND