AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071540.t1 MTR_2g063460 94.108 594 13 2 1 582 1 584 0.0 1071
MS.gene071540.t1 MTR_2g063460 93.771 594 13 3 1 582 1 582 0.0 1062
MS.gene071540.t1 MTR_4g123630 43.333 510 230 14 70 535 11 505 1.98e-105 331
MS.gene071540.t1 MTR_2g032660 42.553 517 217 19 70 532 46 536 4.18e-103 327
MS.gene071540.t1 MTR_4g005110 64.783 230 75 2 306 533 337 562 1.31e-95 305
MS.gene071540.t1 MTR_8g088390 50.502 299 116 8 264 536 234 526 5.17e-85 276
MS.gene071540.t1 MTR_8g088390 50.502 299 116 8 264 536 299 591 9.40e-85 278
MS.gene071540.t1 MTR_2g005840 62.842 183 68 0 348 530 237 419 7.47e-83 267
MS.gene071540.t1 MTR_2g005840 62.842 183 68 0 348 530 268 450 2.99e-82 267
MS.gene071540.t1 MTR_7g085500 57.820 211 79 2 345 555 415 615 7.21e-80 265
MS.gene071540.t1 MTR_6g032970 52.033 246 88 5 310 535 336 571 3.06e-77 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071540.t1 AT1G79270 45.588 476 209 11 91 556 63 498 1.94e-123 374
MS.gene071540.t1 AT1G79270 45.588 476 209 11 91 556 63 498 1.94e-123 374
MS.gene071540.t1 AT1G79270 45.588 476 209 11 91 556 63 498 1.94e-123 374
MS.gene071540.t1 AT1G79270 45.588 476 209 11 91 556 78 513 1.96e-123 374
MS.gene071540.t1 AT1G48110 38.966 503 246 12 71 534 13 493 6.23e-98 311
MS.gene071540.t1 AT1G48110 38.966 503 246 12 71 534 13 493 6.23e-98 311
MS.gene071540.t1 AT3G13060 57.031 256 88 4 294 533 316 565 1.60e-92 297
MS.gene071540.t1 AT3G13060 57.031 256 88 4 294 533 306 555 1.74e-92 297
MS.gene071540.t1 AT3G13060 54.007 287 107 7 294 561 294 574 1.77e-92 296
MS.gene071540.t1 AT3G13060 54.007 287 107 7 294 561 294 574 1.77e-92 296
MS.gene071540.t1 AT3G17330 41.686 439 207 13 116 535 35 443 3.82e-90 290
MS.gene071540.t1 AT3G17330 41.686 439 207 13 116 535 35 443 3.82e-90 290
MS.gene071540.t1 AT3G17330 57.965 226 92 1 313 535 116 341 8.13e-90 286
MS.gene071540.t1 AT3G13460 51.203 291 115 6 275 545 335 618 1.02e-89 291
MS.gene071540.t1 AT3G13460 51.203 291 115 6 275 545 338 621 1.03e-89 291
MS.gene071540.t1 AT3G13460 51.203 291 115 6 275 545 337 620 1.26e-89 290
MS.gene071540.t1 AT1G09810 57.391 230 97 1 305 534 175 403 1.29e-85 274
MS.gene071540.t1 AT1G09810 51.799 278 126 4 261 534 88 361 1.55e-85 273
MS.gene071540.t1 AT1G09810 57.391 230 97 1 305 534 156 384 1.87e-85 273
MS.gene071540.t1 AT1G55500 53.307 257 97 4 291 528 324 576 4.26e-85 277
MS.gene071540.t1 AT1G55500 53.307 257 97 4 291 528 324 576 4.40e-85 276
MS.gene071540.t1 AT1G55500 53.307 257 97 4 291 528 281 533 5.39e-85 275
MS.gene071540.t1 AT1G55500 53.307 257 97 4 291 528 268 520 5.43e-85 275
MS.gene071540.t1 AT1G55500 53.307 257 97 4 291 528 311 563 6.69e-85 276
MS.gene071540.t1 AT1G55500 53.307 257 97 4 291 528 324 576 8.60e-85 276
MS.gene071540.t1 AT5G61020 55.274 237 86 4 310 533 197 426 2.36e-84 272
MS.gene071540.t1 AT5G61020 55.274 237 86 4 310 533 199 428 2.63e-84 271
MS.gene071540.t1 AT3G03950 55.357 224 96 1 310 533 189 408 2.81e-81 261
MS.gene071540.t1 AT3G03950 55.357 224 96 1 310 533 190 409 2.95e-81 261
MS.gene071540.t1 AT3G03950 55.357 224 96 1 310 533 193 412 3.02e-81 261
MS.gene071540.t1 AT1G27960 56.250 224 83 3 310 533 215 423 4.93e-79 257
MS.gene071540.t1 AT1G27960 56.250 224 83 3 310 533 289 497 4.44e-78 256
MS.gene071540.t1 AT5G58190 38.428 458 218 17 113 555 106 514 5.00e-77 253
MS.gene071540.t1 AT5G58190 38.428 458 218 17 113 555 105 513 5.36e-77 253
MS.gene071540.t1 AT3G13060 56.075 214 72 4 294 491 316 523 1.74e-71 239
MS.gene071540.t1 AT3G13460 45.783 166 63 6 275 420 338 496 6.00e-29 121
MS.gene071540.t1 AT3G13060 43.357 143 59 4 294 420 316 452 4.76e-25 108
MS.gene071540.t1 AT1G27960 48.214 112 43 3 310 421 289 385 1.10e-19 92.4
MS.gene071540.t1 AT4G11970 30.357 168 82 5 343 491 44 195 1.99e-13 72.4
MS.gene071540.t1 AT4G11970 30.357 168 82 5 343 491 44 195 2.20e-13 72.4
MS.gene071540.t1 AT4G11970 30.357 168 82 5 343 491 44 195 2.24e-13 72.4
MS.gene071540.t1 AT4G11970 30.460 174 84 6 343 497 44 199 4.73e-13 72.0
MS.gene071540.t1 AT4G11970 30.460 174 84 6 343 497 44 199 4.73e-13 72.0

Find 0 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGACTTCTAAATAAATTAT+TGG - 14997:10563-10582 MS.gene071540:intergenic 15.0%
!! ATAGTAGAAAAATAAAGAAT+TGG - 14997:10518-10537 MS.gene071540:intergenic 15.0%
!! ATATAAATGAAAAGTAAAGA+AGG - 14997:10620-10639 MS.gene071540:intergenic 15.0%
!! CATTTATTAAATATTGTGAA+AGG - 14997:10376-10395 MS.gene071540:intergenic 15.0%
!! GAAAATAACATGTTAATAAA+AGG + 14997:8174-8193 MS.gene071540:intron 15.0%
!! TAATTGTAACACAATTAAAA+AGG - 14997:10593-10612 MS.gene071540:intergenic 15.0%
!! TAGTAGAAAAATAAAGAATT+GGG - 14997:10517-10536 MS.gene071540:intergenic 15.0%
!! TATAAATGAAAAGTAAAGAA+GGG - 14997:10619-10638 MS.gene071540:intergenic 15.0%
!!! AATTCTTTATTTTTCTACTA+TGG + 14997:10517-10536 MS.gene071540:intron 15.0%
!!! AATTTTTGTTGGTTTTATTT+AGG + 14997:8393-8412 MS.gene071540:intron 15.0%
!!! ATGTTTTCTTATTGTATTTT+TGG + 14997:7268-7287 MS.gene071540:intron 15.0%
!!! GTAAATATCTAAATTTTTGT+TGG + 14997:8382-8401 MS.gene071540:intron 15.0%
!!! TCTTTGCTTATATATAATTT+TGG + 14997:10815-10834 MS.gene071540:intron 15.0%
!!! TTGAATTCTGAAATAAATTT+GGG + 14997:8133-8152 MS.gene071540:intron 15.0%
!!! TTTCTCTTTCTAAAATTATA+AGG - 14997:8962-8981 MS.gene071540:intergenic 15.0%
!!! TTTGAATTCTGAAATAAATT+TGG + 14997:8132-8151 MS.gene071540:intron 15.0%
!! AAACAATAGTTAAAACAGAA+CGG - 14997:8869-8888 MS.gene071540:intergenic 20.0%
!! AATGTCAAAAAAGAATTCAT+TGG - 14997:10294-10313 MS.gene071540:intergenic 20.0%
!! AGATTATTCTAAATAGTTTG+TGG + 14997:9055-9074 MS.gene071540:intron 20.0%
!! ATGAGTAGATTATGAAAATT+TGG - 14997:10650-10669 MS.gene071540:intergenic 20.0%
!! CAAAAACTAAAGAAATGAAA+GGG - 14997:10787-10806 MS.gene071540:intergenic 20.0%
!! CAAAGTAATTAATAACTCTT+TGG + 14997:10459-10478 MS.gene071540:intron 20.0%
!! TGAGTAGATTATGAAAATTT+GGG - 14997:10649-10668 MS.gene071540:intergenic 20.0%
!!! ATTTGTTGTATGTTATGTTA+AGG + 14997:7291-7310 MS.gene071540:intron 20.0%
!!! ATTTTAGAAAGAGAAATAAG+TGG + 14997:8966-8985 MS.gene071540:intron 20.0%
!!! TCATGATAATTGTGTTATTA+TGG + 14997:7855-7874 MS.gene071540:intron 20.0%
!!! TGTTCTTCTTGTTTATTTTT+TGG + 14997:6953-6972 MS.gene071540:intron 20.0%
!!! TTCTTTTTTGACATTATTGA+TGG + 14997:10299-10318 MS.gene071540:intron 20.0%
!!! TTTATGTTTTTCCTTTCTTA+CGG + 14997:7708-7727 MS.gene071540:intron 20.0%
! AACTATATATTGAACTGTTG+GGG + 14997:8989-9008 MS.gene071540:intron 25.0%
! AACTCCAAATTATTCCAAAA+AGG - 14997:10430-10449 MS.gene071540:intergenic 25.0%
! AAGATACAGAAGAAATAACT+AGG - 14997:9994-10013 MS.gene071540:intergenic 25.0%
! ACTCCAAATTATTCCAAAAA+GGG - 14997:10429-10448 MS.gene071540:intergenic 25.0%
! ATGAGCAAATAAAACACAAA+CGG - 14997:9653-9672 MS.gene071540:intergenic 25.0%
! GAAAATCAAGGATATTATGT+CGG + 14997:7771-7790 MS.gene071540:CDS 25.0%
! GAACTATATATTGAACTGTT+GGG + 14997:8988-9007 MS.gene071540:intron 25.0%
! GCAAAAACTAAAGAAATGAA+AGG - 14997:10788-10807 MS.gene071540:intergenic 25.0%
! GTTGAAGAAACATCTAATAT+TGG - 14997:8794-8813 MS.gene071540:intergenic 25.0%
! TAACATTCAAGGAAAAAATG+TGG + 14997:8276-8295 MS.gene071540:intron 25.0%
! TAAGCATATATCTTCAGAAA+GGG + 14997:8058-8077 MS.gene071540:intron 25.0%
! TATGTTAAGGTTTCTTCAAA+GGG + 14997:7304-7323 MS.gene071540:intron 25.0%
! TATTATGGATATTACTATCC+AGG + 14997:7460-7479 MS.gene071540:CDS 25.0%
! TATTGCATTACACATGAAAA+TGG + 14997:8206-8225 MS.gene071540:intron 25.0%
! TCAGATTCAAGTATTTATAC+AGG - 14997:7943-7962 MS.gene071540:intergenic 25.0%
! TGAACATAATAATTCCAACA+TGG + 14997:7118-7137 MS.gene071540:CDS 25.0%
! TGTAACACAATTAAAAAGGT+GGG - 14997:10589-10608 MS.gene071540:intergenic 25.0%
! TTAAGCATATATCTTCAGAA+AGG + 14997:8057-8076 MS.gene071540:intron 25.0%
! TTAGTAAGAAGTAAGAACTT+TGG - 14997:10241-10260 MS.gene071540:intergenic 25.0%
! TTATGTTAAGGTTTCTTCAA+AGG + 14997:7303-7322 MS.gene071540:intron 25.0%
! TTGTAACACAATTAAAAAGG+TGG - 14997:10590-10609 MS.gene071540:intergenic 25.0%
!! AAGTTTTCTACATACAATCA+AGG + 14997:9151-9170 MS.gene071540:CDS 25.0%
!! TTTAGAATAGTTTGTCAACT+AGG - 14997:10399-10418 MS.gene071540:intergenic 25.0%
!!! AAGAAATGAAAGGGTTTTTT+CGG - 14997:10778-10797 MS.gene071540:intergenic 25.0%
!!! ACTTATTTTTACTCGAAACT+CGG + 14997:10705-10724 MS.gene071540:intron 25.0%
!!! ATACCCTTTTTGGAATAATT+TGG + 14997:10423-10442 MS.gene071540:intron 25.0%
!!! ATTAGGAAAGTTGTTTTGAT+AGG - 14997:9191-9210 MS.gene071540:intergenic 25.0%
!!! ATTTTTTCCTTGAATGTTAC+AGG - 14997:8275-8294 MS.gene071540:intergenic 25.0%
!!! TTAGGAAAGTTGTTTTGATA+GGG - 14997:9190-9209 MS.gene071540:intergenic 25.0%
!!! TTCTGAAATAAATTTGGGAT+TGG + 14997:8138-8157 MS.gene071540:intron 25.0%
!!! TTTTGATAATTGTTGAGTTC+AGG + 14997:9708-9727 MS.gene071540:intron 25.0%
!!! TTTTGGAATAATTTGGAGTT+GGG + 14997:10430-10449 MS.gene071540:intron 25.0%
!!! TTTTTGGAATAATTTGGAGT+TGG + 14997:10429-10448 MS.gene071540:intron 25.0%
AGATCATGTGTATCATCAAT+AGG + 14997:7352-7371 MS.gene071540:CDS 30.0%
AGGGAATCGTTATAATGAAT+TGG + 14997:8648-8667 MS.gene071540:CDS 30.0%
CAACCACAATTATGCAAAAA+TGG - 14997:10346-10365 MS.gene071540:intergenic 30.0%
GAAGAAACATCTAATATTGG+TGG - 14997:8791-8810 MS.gene071540:intergenic 30.0%
GGAACTATATATTGAACTGT+TGG + 14997:8987-9006 MS.gene071540:intron 30.0%
GTAAAATCAAACCTGTACAT+TGG - 14997:10198-10217 MS.gene071540:intergenic 30.0%
TAATCATTCTACCGTAAGAA+AGG - 14997:7722-7741 MS.gene071540:intergenic 30.0%
TACCGAAAAGAAAAGGAATA+CGG - 14997:9590-9609 MS.gene071540:intergenic 30.0%
TATTCTGCTGGTAGTTATTA+TGG + 14997:7445-7464 MS.gene071540:CDS 30.0%
TCATATTTGGTTGGAAAATC+AGG - 14997:9409-9428 MS.gene071540:intergenic 30.0%
TGAGCAAATAAAACACAAAC+GGG - 14997:9652-9671 MS.gene071540:intergenic 30.0%
! AGTGGATTTCAACAAAAGTA+TGG + 14997:9777-9796 MS.gene071540:CDS 30.0%
! ATTGATAACACTGACGAATA+GGG - 14997:7506-7525 MS.gene071540:intergenic 30.0%
! CATTTTTGCATAATTGTGGT+TGG + 14997:10344-10363 MS.gene071540:intron 30.0%
! CTGATAATTTGCATTGCATT+AGG + 14997:7959-7978 MS.gene071540:intron 30.0%
! GAAAAGTGCATGATCATATT+TGG - 14997:9422-9441 MS.gene071540:intergenic 30.0%
! TCAACAAAAGTATGGATTTC+TGG + 14997:9785-9804 MS.gene071540:CDS 30.0%
! TCTAAACTTGATACCCTTTT+TGG + 14997:10413-10432 MS.gene071540:intron 30.0%
!! AATAGTTTGTGGTGTTTTTC+AGG + 14997:9066-9085 MS.gene071540:intron 30.0%
!! AGAACTTTGGAATAAGAACA+AGG - 14997:10228-10247 MS.gene071540:intergenic 30.0%
!! GTACTTGTTGCTTTCATATT+AGG - 14997:9208-9227 MS.gene071540:intergenic 30.0%
!! TTATAATGTGCCATTTGACA+GGG - 14997:9837-9856 MS.gene071540:intergenic 30.0%
!! TTTATAATGTGCCATTTGAC+AGG - 14997:9838-9857 MS.gene071540:intergenic 30.0%
!!! AATTTGGGATTGGCTAATTT+TGG + 14997:8148-8167 MS.gene071540:intron 30.0%
!!! TAGGAAAGTTGTTTTGATAG+GGG - 14997:9189-9208 MS.gene071540:intergenic 30.0%
AAATAGTAGAGACACTCAAG+AGG + 14997:9921-9940 MS.gene071540:CDS 35.0%
AATTGACCAGATATGCAACA+AGG - 14997:7902-7921 MS.gene071540:intergenic 35.0%
ACATACAATCAAGGAAAGAG+TGG + 14997:9160-9179 MS.gene071540:CDS 35.0%
ACCGAAAAGAAAAGGAATAC+GGG - 14997:9589-9608 MS.gene071540:intergenic 35.0%
ACTTCCATCAACATACTCAT+GGG + 14997:8594-8613 MS.gene071540:CDS 35.0%
AGAATGATTACAGGTTATGG+TGG + 14997:7732-7751 MS.gene071540:intron 35.0%
AGTGCATGATCATATTTGGT+TGG - 14997:9418-9437 MS.gene071540:intergenic 35.0%
ATAAGCAACATTCTGATCAG+TGG - 14997:7428-7447 MS.gene071540:intergenic 35.0%
ATAAGGTGAAATATAGCCAG+GGG - 14997:8566-8585 MS.gene071540:intergenic 35.0%
ATATTCCAAATCCTCAGCTA+CGG + 14997:9860-9879 MS.gene071540:CDS 35.0%
ATGAAAGCAACAAGTACCAA+GGG + 14997:9211-9230 MS.gene071540:CDS 35.0%
ATGAATAAGAAGAAGCTGCA+TGG + 14997:7080-7099 MS.gene071540:CDS 35.0%
ATGGCTGCTGAATTGAAAAA+AGG + 14997:6917-6936 MS.gene071540:CDS 35.0%
ATTTGGTTGGAAAATCAGGA+AGG - 14997:9405-9424 MS.gene071540:intergenic 35.0%
CAATAGTTAAAACAGAACGG+AGG - 14997:8866-8885 MS.gene071540:intergenic 35.0%
CATAAGGTGAAATATAGCCA+GGG - 14997:8567-8586 MS.gene071540:intergenic 35.0%
CATACAATCAAGGAAAGAGT+GGG + 14997:9161-9180 MS.gene071540:CDS 35.0%
CATATCAGCTGTAAAGAACA+TGG + 14997:10882-10901 MS.gene071540:CDS 35.0%
CCTAGAACAGTTAATGCAAA+AGG + 14997:9304-9323 MS.gene071540:CDS 35.0%
CTCACAACAACATGAAACAA+TGG - 14997:8005-8024 MS.gene071540:intergenic 35.0%
GATAGCATACCGAAAAGAAA+AGG - 14997:9597-9616 MS.gene071540:intergenic 35.0%
GGTAGAATGATTACAGGTTA+TGG + 14997:7729-7748 MS.gene071540:intron 35.0%
GTATGTAGAAAACTTTGCGA+CGG - 14997:9146-9165 MS.gene071540:intergenic 35.0%
TACTTCCATCAACATACTCA+TGG + 14997:8593-8612 MS.gene071540:CDS 35.0%
TATGAAAGCAACAAGTACCA+AGG + 14997:9210-9229 MS.gene071540:CDS 35.0%
TATGGAGAGCAAGAAAATCA+AGG + 14997:7759-7778 MS.gene071540:CDS 35.0%
TATGTAGAAAACTTTGCGAC+GGG - 14997:9145-9164 MS.gene071540:intergenic 35.0%
TCACTTAATGAGCAGAATCA+AGG + 14997:9280-9299 MS.gene071540:CDS 35.0%
TCCAATTGGTTGTTGAAAGA+CGG - 14997:8542-8561 MS.gene071540:intergenic 35.0%
TCTTACGGTAGAATGATTAC+AGG + 14997:7723-7742 MS.gene071540:intron 35.0%
TGTATCGAGAACATCGATAT+TGG + 14997:10100-10119 MS.gene071540:CDS 35.0%
TTAGACAGCGACAAATAAAC+AGG - 14997:8897-8916 MS.gene071540:intergenic 35.0%
TTCACTTTCTCAACCAACTT+AGG - 14997:10943-10962 MS.gene071540:intergenic 35.0%
TTGAGAAAGTGAATGACTGA+TGG + 14997:10950-10969 MS.gene071540:CDS 35.0%
TTGAGCATTTCAATACCTTG+CGG - 14997:10065-10084 MS.gene071540:intergenic 35.0%
! AAGTTTCTTGAGCTGGTTTA+TGG + 14997:7824-7843 MS.gene071540:intron 35.0%
! AGTTTGCTCACATTAGATGA+GGG - 14997:8748-8767 MS.gene071540:intergenic 35.0%
! ATGTTGATCTGTCCTGATTT+TGG - 14997:9380-9399 MS.gene071540:intergenic 35.0%
! CCTTTTGCATTAACTGTTCT+AGG - 14997:9307-9326 MS.gene071540:intergenic 35.0%
! GATTGATAACACTGACGAAT+AGG - 14997:7507-7526 MS.gene071540:intergenic 35.0%
! GTGTCTCTACTATTTGTTAC+AGG - 14997:9916-9935 MS.gene071540:intergenic 35.0%
! TCCCGTATTCCTTTTCTTTT+CGG + 14997:9585-9604 MS.gene071540:CDS 35.0%
! TTAAACTCTGGAGGTAATTC+TGG + 14997:9331-9350 MS.gene071540:CDS 35.0%
! TTTTGCATAATTGTGGTTGG+AGG + 14997:10347-10366 MS.gene071540:intron 35.0%
!! AAAGGTACTTTAAACTCTGG+AGG + 14997:9322-9341 MS.gene071540:CDS 35.0%
!! ATTTCTGGCAGCAAGATAAA+TGG + 14997:9800-9819 MS.gene071540:CDS 35.0%
!! CTATGGTTGATGTGTTCTTT+TGG + 14997:10534-10553 MS.gene071540:intron 35.0%
!! GCAAAAGGTACTTTAAACTC+TGG + 14997:9319-9338 MS.gene071540:CDS 35.0%
!! GGACCATTTTTGCATAATTG+TGG + 14997:10340-10359 MS.gene071540:intron 35.0%
!! GTTACCTTGTTTGCTTGTTT+TGG - 14997:8836-8855 MS.gene071540:intergenic 35.0%
!!! AATGAAAGGGTTTTTTCGGT+TGG - 14997:10774-10793 MS.gene071540:intergenic 35.0%
!!! ACAGGTTATGGTGGATTTTA+TGG + 14997:7741-7760 MS.gene071540:intron 35.0%
!!! GCTTCTGGTAGTTTTAAAGA+AGG + 14997:7379-7398 MS.gene071540:CDS 35.0%
!!! TTTTTTCGGTTGGACTAGTT+TGG - 14997:10764-10783 MS.gene071540:intergenic 35.0%
AAAACAGAACGGAGGAAGTA+AGG - 14997:8858-8877 MS.gene07154:intergenic 40.0%
AACCAGCTCAAGAAACTTAC+AGG - 14997:7822-7841 MS.gene071540:intergenic 40.0%
ACACATGATCTTGCATCAGA+TGG - 14997:7343-7362 MS.gene071540:intergenic 40.0%
ACGGATATTTCCCTGTCAAA+TGG + 14997:9824-9843 MS.gene071540:CDS 40.0%
AGCAAACTCATCAGAAGTGA+AGG + 14997:8760-8779 MS.gene071540:intron 40.0%
ATCAGCTGTAAAGAACATGG+AGG + 14997:10885-10904 MS.gene071540:CDS 40.0%
ATCCTGTAAGTTTCTTGAGC+TGG + 14997:7817-7836 MS.gene071540:intron 40.0%
ATTGCATCTGAATGGAGAAC+AGG - 14997:9106-9125 MS.gene071540:intergenic 40.0%
CAAACCTGTACATTGGTATG+TGG - 14997:10191-10210 MS.gene071540:intergenic 40.0%
CAACATTCTGATCAGTGGAT+TGG - 14997:7423-7442 MS.gene071540:intergenic 40.0%
CAGAATCGAATGGAAGAGAA+AGG + 14997:9553-9572 MS.gene071540:CDS 40.0%
CATTCAGATGCAATGCCAAA+GGG + 14997:9112-9131 MS.gene071540:CDS 40.0%
CCATAAGGTGAAATATAGCC+AGG - 14997:8568-8587 MS.gene071540:intergenic 40.0%
CCTGGCTATATTTCACCTTA+TGG + 14997:8565-8584 MS.gene071540:CDS 40.0%
CTCTGTTCTGTTAAGACCTA+CGG + 14997:9626-9645 MS.gene071540:intron 40.0%
CTGATGTCCTGTAACATTCA+AGG + 14997:8265-8284 MS.gene071540:intron 40.0%
GAAAAGATCGATCTACCACT+CGG - 14997:8682-8701 MS.gene071540:intergenic 40.0%
GAAGACTTAACAAGTGCACT+TGG + 14997:10850-10869 MS.gene071540:CDS 40.0%
GAAGCTGAAACTCAGAAACA+AGG + 14997:9249-9268 MS.gene071540:CDS 40.0%
GAATCCCATGAGTATGTTGA+TGG - 14997:8601-8620 MS.gene071540:intergenic 40.0%
GAGCATCAAGTACGATGTAT+GGG + 14997:9480-9499 MS.gene071540:CDS 40.0%
GATGGAAGTAACTCACCATA+AGG - 14997:8583-8602 MS.gene071540:intergenic 40.0%
GCAAACTCATCAGAAGTGAA+GGG + 14997:8761-8780 MS.gene071540:intron 40.0%
GCTTGTGATCATTATTCTCG+AGG - 14997:9894-9913 MS.gene071540:intergenic 40.0%
GTACACCTAATGGCAATAAG+AGG + 14997:9506-9525 MS.gene071540:CDS 40.0%
GTTAAGGTTTCTTCAAAGGG+TGG + 14997:7307-7326 MS.gene071540:intron 40.0%
TACCTTGCGGAAAATGAATC+TGG - 14997:10052-10071 MS.gene071540:intergenic 40.0%
TAGGTCATGCAAGCAGATAA+TGG + 14997:8412-8431 MS.gene071540:intron 40.0%
TATGCCACATACCAATGTAC+AGG + 14997:10184-10203 MS.gene071540:CDS 40.0%
TCAATGGTGACACCAAAATC+AGG + 14997:9365-9384 MS.gene071540:CDS 40.0%
TCATCAATAGGAGATGCTTC+TGG + 14997:7364-7383 MS.gene071540:CDS 40.0%
TCCGTCTTTCAACAACCAAT+TGG + 14997:8538-8557 MS.gene071540:CDS 40.0%
TCTTATGTCTATCTCATGCC+AGG + 14997:8436-8455 MS.gene071540:CDS 40.0%
TGGCAGCAAGATAAATGGAA+CGG + 14997:9805-9824 MS.gene071540:CDS 40.0%
TGTACATTGGTATGTGGCAT+AGG - 14997:10185-10204 MS.gene071540:intergenic 40.0%
TTTGTTCAGATTCCGCTATG+CGG + 14997:7629-7648 MS.gene071540:intron 40.0%
! AACGCTAGTGGTCAATTTTG+TGG + 14997:9733-9752 MS.gene071540:CDS 40.0%
! AGAGCATCAAGTACGATGTA+TGG + 14997:9479-9498 MS.gene071540:CDS 40.0%
! CAGAATGTTGCTTATTCTGC+TGG + 14997:7433-7452 MS.gene071540:CDS 40.0%
! GAGTTTGCTCACATTAGATG+AGG - 14997:8749-8768 MS.gene071540:intergenic 40.0%
! TAGTTGCCTTGTTGCATATC+TGG + 14997:7893-7912 MS.gene071540:intron 40.0%
! TTCCAGATTCATTTTCCGCA+AGG + 14997:10047-10066 MS.gene071540:intron 40.0%
! TTTTTACGAAACCCGTCAGA+AGG + 14997:10133-10152 MS.gene071540:CDS 40.0%
!! TCTGGAGATAAGAGTGTCAA+TGG + 14997:9349-9368 MS.gene071540:CDS 40.0%
!!! GTTTTTCAGGCATCCATTTC+TGG + 14997:9079-9098 MS.gene071540:intron 40.0%
AAGCAACAAGTACCAAGGGA+TGG + 14997:9215-9234 MS.gene071540:CDS 45.0%
AAGGTTTCTTCAAAGGGTGG+TGG + 14997:7310-7329 MS.gene071540:intron 45.0%
ACATTAACGCTACCGCATAG+CGG - 14997:7644-7663 MS.gene071540:intergenic 45.0%
ACCACACAAGATGTAGCACA+AGG + 14997:8628-8647 MS.gene071540:CDS 45.0%
ACTGACGAATAGGGAACCAT+GGG - 14997:7497-7516 MS.gene071540:intergenic 45.0%
AGCAACAAGTACCAAGGGAT+GGG + 14997:9216-9235 MS.gene071540:CDS 45.0%
AGGACATCAGAGATGATGTC+GGG - 14997:8255-8274 MS.gene071540:intergenic 45.0%
AGGATAATATGCCGTAGCTG+AGG - 14997:9874-9893 MS.gene071540:intergenic 45.0%
ATAAAACACAAACGGGCCGT+AGG - 14997:9645-9664 MS.gene071540:intergenic 45.0%
ATATAGCCAGGGGATCCAAT+TGG - 14997:8556-8575 MS.gene071540:intergenic 45.0%
ATATGCCGTAGCTGAGGATT+TGG - 14997:9868-9887 MS.gene071540:intergenic 45.0%
ATCCACTCGTCCAATCATCT+CGG - 14997:9764-9783 MS.gene071540:intergenic 45.0%
ATGGAGAACAGGACCAGAAA+TGG - 14997:9095-9114 MS.gene071540:intergenic 45.0%
CACATGCAAGCTTACCATGT+TGG - 14997:7135-7154 MS.gene071540:intergenic 45.0%
CAGGACATCAGAGATGATGT+CGG - 14997:8256-8275 MS.gene071540:intergenic 45.0%
CCACACAAGATGTAGCACAA+GGG + 14997:8629-8648 MS.gene071540:CDS 45.0%
CCAGCCAAAACAAGCAAACA+AGG + 14997:8829-8848 MS.gene071540:CDS 45.0%
CCATTCAGATGCAATGCCAA+AGG + 14997:9111-9130 MS.gene071540:CDS 45.0%
CCTTTGGCATTGCATCTGAA+TGG - 14997:9114-9133 MS.gene071540:intergenic 45.0%
GAACATGGAGGATCCTAAGT+TGG + 14997:10897-10916 MS.gene071540:CDS 45.0%
TACTTTCCTGTGAACACACC+TGG + 14997:8481-8500 MS.gene071540:CDS 45.0%
TCAGGATGCACAGAATCGAA+TGG + 14997:9543-9562 MS.gene071540:CDS 45.0%
TCGAGCCTCTTATTGCCATT+AGG - 14997:9514-9533 MS.gene071540:intergenic 45.0%
TCTCTTGCATGACCTTCTGA+CGG - 14997:10148-10167 MS.gene071540:intergenic 45.0%
TGAACTGTTGGGGATTTCGT+AGG + 14997:8999-9018 MS.gene071540:intron 45.0%
TGGATGAGTGCATGTGATTG+TGG + 14997:10319-10338 MS.gene071540:intron 45.0%
! TTTTCTTCGCAGAGTCGTAC+TGG + 14997:8697-8716 MS.gene071540:CDS 45.0%
!!! CCTTGTTTGCTTGTTTTGGC+TGG - 14997:8832-8851 MS.gene071540:intergenic 45.0%
!!! TTTATTTTTTTTATATTTTG+CGG + 14997:7182-7201 MS.gene071540:intron 5.0%
ACGAATAGGGAACCATGGGA+GGG - 14997:7493-7512 MS.gene071540:intergenic 50.0%
CAACAACCAATTGGATCCCC+TGG + 14997:8547-8566 MS.gene071540:CDS 50.0%
CACTGACGAATAGGGAACCA+TGG - 14997:7498-7517 MS.gene071540:intergenic 50.0%
CAGGAGGGTAAACCTGATAC+TGG - 14997:8516-8535 MS.gene071540:intergenic 50.0%
CAGTATCAGGTTTACCCTCC+TGG + 14997:8514-8533 MS.gene071540:CDS 50.0%
CCCTTGTGCTACATCTTGTG+TGG - 14997:8632-8651 MS.gene071540:intergenic 50.0%
CGATCTACCACTCGGTTTAC+TGG - 14997:8674-8693 MS.gene071540:intergenic 50.0%
CTCAGTACTAACCCATCCCT+TGG - 14997:9230-9249 MS.gene071540:intergenic 50.0%
CTCATGCCAGGATATCAGAC+TGG + 14997:8448-8467 MS.gene071540:CDS 50.0%
CTCTTGCATGACCTTCTGAC+GGG - 14997:10147-10166 MS.gene071540:intergenic 50.0%
GAATTGGCCAGTAAACCGAG+TGG + 14997:8664-8683 MS.gene071540:CDS 50.0%
GAGGCTCGACAATGCATTTC+AGG + 14997:9525-9544 MS.gene071540:CDS 50.0%
GAGTAGCCAGTCTGATATCC+TGG - 14997:8457-8476 MS.gene071540:intergenic 50.0%
GCTATGCGGTAGCGTTAATG+TGG + 14997:7643-7662 MS.gene071540:intron 50.0%
GGTTGTTGAAAGACGGAACC+AGG - 14997:8535-8554 MS.gene071540:intergenic 50.0%
GTATGGGCGAGTACACCTAA+TGG + 14997:9496-9515 MS.gene071540:CDS 50.0%
GTTGAAAGACGGAACCAGGA+GGG - 14997:8531-8550 MS.gene071540:intergenic 50.0%
TGAGTTCAGGTCAACGCTAG+TGG + 14997:9721-9740 MS.gene071540:intron 50.0%
TGATACTGGACATCGACACC+AGG - 14997:8502-8521 MS.gene071540:intergenic 50.0%
TGTGGAGTAGCCGAGATGAT+TGG + 14997:9751-9770 MS.gene071540:CDS 50.0%
TGTTGAAAGACGGAACCAGG+AGG - 14997:8532-8551 MS.gene071540:intergenic 50.0%
!! TGGTGTCGATGTCCAGTATC+AGG + 14997:8501-8520 MS.gene071540:CDS 50.0%
!! TTATGTCGGCGCTGATGCTA+TGG + 14997:7785-7804 MS.gene071540:CDS 50.0%
AGCCGAGATGATTGGACGAG+TGG + 14997:9759-9778 MS.gene071540:CDS 55.0%
GACGAATAGGGAACCATGGG+AGG - 14997:7494-7513 MS.gene071540:intergenic 55.0%
GCGACGGGAAAAGAACCCTT+TGG - 14997:9130-9149 MS.gene071540:intergenic 55.0%
TCGACACCAGGTGTGTTCAC+AGG - 14997:8490-8509 MS.gene071540:intergenic 55.0%
CCATGGGAGGGAAGCTAACC+TGG - 14997:7481-7500 MS.gene071540:intergenic 60.0%
! TCGCAGAGTCGTACTGGCAG+TGG + 14997:8703-8722 MS.gene071540:CDS 60.0%
!! CCAGGTTAGCTTCCCTCCCA+TGG + 14997:7478-7497 MS.gene071540:intron 60.0%


Chromosome Type Strat End Strand Name
14997 gene 6917 10969 6917 ID=MS.gene071540
14997 mRNA 6917 10969 6917 ID=MS.gene071540.t1;Parent=MS.gene071540
14997 exon 6917 6938 6917 ID=MS.gene071540.t1.exon1;Parent=MS.gene071540.t1
14997 CDS 6917 6938 6917 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 7069 7139 7069 ID=MS.gene071540.t1.exon2;Parent=MS.gene071540.t1
14997 CDS 7069 7139 7069 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 7313 7481 7313 ID=MS.gene071540.t1.exon3;Parent=MS.gene071540.t1
14997 CDS 7313 7481 7313 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 7745 7821 7745 ID=MS.gene071540.t1.exon4;Parent=MS.gene071540.t1
14997 CDS 7745 7821 7745 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 8415 8724 8415 ID=MS.gene071540.t1.exon5;Parent=MS.gene071540.t1
14997 CDS 8415 8724 8415 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 8762 8850 8762 ID=MS.gene071540.t1.exon6;Parent=MS.gene071540.t1
14997 CDS 8762 8850 8762 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 9088 9606 9088 ID=MS.gene071540.t1.exon7;Parent=MS.gene071540.t1
14997 CDS 9088 9606 9088 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 9730 9942 9730 ID=MS.gene071540.t1.exon8;Parent=MS.gene071540.t1
14997 CDS 9730 9942 9730 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 10053 10205 10053 ID=MS.gene071540.t1.exon9;Parent=MS.gene071540.t1
14997 CDS 10053 10205 10053 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
14997 exon 10844 10969 10844 ID=MS.gene071540.t1.exon10;Parent=MS.gene071540.t1
14997 CDS 10844 10969 10844 ID=cds.MS.gene071540.t1;Parent=MS.gene071540.t1
Gene Sequence

>MS.gene071540

ATGGCTGCTGAATTGAAAAAAGGTATTTGTTTTCTTTGTTCTTCTTGTTTATTTTTTGGTTTAGATTTAAATTTTATTTCAATTTGATTATGATTTGAATATTTTGATTTTTTTTTTAATAAAAATGAGATTTTTACTGTGTTTTTTTACAGCTGCAGATGAAATGAATAAGAAGAAGCTGCATGGTGATTCTTCAACAGCTGAACATAATAATTCCAACATGGTAAGCTTGCATGTGATTTCTAAATTTTTATTTTATTTTTGTTTTATTTTTTTTATATTTTGCGGCTTAATTTTGAATTTTGAAATTAACTGTTTCATTAGTTATATGCATGAAACTTGAAGAATTACATGTTTTCTTATTGTATTTTTGGATTTGTTGTATGTTATGTTAAGGTTTCTTCAAAGGGTGGTGGAAGTTCACCATCTGATGCAAGATCATGTGTATCATCAATAGGAGATGCTTCTGGTAGTTTTAAAGAAGGCGATGTTGATCATGAATTCCAATCCACTGATCAGAATGTTGCTTATTCTGCTGGTAGTTATTATGGATATTACTATCCAGGTTAGCTTCCCTCCCATGGTTCCCTATTCGTCAGTGTTATCAATCGCAGATCGCAGAAACTAGCAGTTTGTTCAAATTATGATATGCTATATCACAGTTGTTGATGCTATTTGACAACAGTTTGTTTAAAATAGAGAACAGTAGCGATTTGTTCAGATTCCGCTATGCGGTAGCGTTAATGTGGCTGCTATTGACAACACTGCTATTCGTTTATGTTGATTGTATATTTATGTTTTTCCTTTCTTACGGTAGAATGATTACAGGTTATGGTGGATTTTATGGAGAGCAAGAAAATCAAGGATATTATGTCGGCGCTGATGCTATGGATTTTCAGTATCCTGTAAGTTTCTTGAGCTGGTTTATGGTTTTTTTGTCATGATAATTGTGTTATTATGGTTCAGTCTTTCTATGTAGTTGCCTTGTTGCATATCTGGTCAATTCAGTCTATGCATTTGATGCCTGTATAAATACTTGAATCTGATAATTTGCATTGCATTAGGCAAGTCTTTAGAATCATATTCCATTGTTTCATGTTGTTGTGAGAAACATGCATGTGTCTCAAAGAATCGTATTCTTTAAGCATATATCTTCAGAAAGGGTTGAATAGAAAATAAAACTGTAATGATGATGTATAATGTTTTTTAGCACATTTTGAATTCTGAAATAAATTTGGGATTGGCTAATTTTGGCTTGAAAATAACATGTTAATAAAAGGCTTCATTCATATTGCATTACACATGAAAATGGTTAATATTTTAAACTACTATTTACCCGACATCATCTCTGATGTCCTGTAACATTCAAGGAAAAAATGTGGCTAGTAAATATGATTTTATGAAATGATAAGATTCATTATGCAGACATATACTTGATCTCTCATATGTTCTACAACATATATATGTAAATATCTAAATTTTTGTTGGTTTTATTTAGGTCATGCAAGCAGATAATGGATCTTATGTCTATCTCATGCCAGGATATCAGACTGGCTACTCTTCATACTTTCCTGTGAACACACCTGGTGTCGATGTCCAGTATCAGGTTTACCCTCCTGGTTCCGTCTTTCAACAACCAATTGGATCCCCTGGCTATATTTCACCTTATGGTGAGTTACTTCCATCAACATACTCATGGGATTCATCTTTAACCACACAAGATGTAGCACAAGGGAATCGTTATAATGAATTGGCCAGTAAACCGAGTGGTAGATCGATCTTTTCTTCGCAGAGTCGTACTGGCAGTGGTATTGTGTCAAAGTCTGTGCCCTCATCTAATGTGAGCAAACTCATCAGAAGTGAAGGGTTTGCCACCAATATTAGATGTTTCTTCAACACATGTTAAGCGCAACCAGCCAAAACAAGCAAACAAGGTAACCTTACTTCCTCCGTTCTGTTTTAACTATTGTTTTTGTTCCTGTTTATTTGTCGCTGTCTAAGTTCAATGCAATATTAACTATTGTTTTTTCGATATATGCTTACCTTATAATTTTAGAAAGAGAAATAAGTGGAACTATATATTGAACTGTTGGGGATTTCGTAGGAAAACAACAAATAATTTCATCAAAAGTTAAATTAGATTATTCTAAATAGTTTGTGGTGTTTTTCAGGCATCCATTTCTGGTCCTGTTCTCCATTCAGATGCAATGCCAAAGGGTTCTTTTCCCGTCGCAAAGTTTTCTACATACAATCAAGGAAAGAGTGGGTTCCCCTATCAAAACAACTTTCCTAATATGAAAGCAACAAGTACCAAGGGATGGGTTAGTACTGAGAAGCTGAAACTCAGAAACAAGGTTAATGATTCACTTAATGAGCAGAATCAAGGTCCTAGAACAGTTAATGCAAAAGGTACTTTAAACTCTGGAGGTAATTCTGGAGATAAGAGTGTCAATGGTGACACCAAAATCAGGACAGATCAACATAACCTTCCTGATTTTCCAACCAAATATGATCATGCACTTTTCTTCGTCATTAAATCGTACAGTGAAGATGATGTTCATAAGAGCATCAAGTACGATGTATGGGCGAGTACACCTAATGGCAATAAGAGGCTCGACAATGCATTTCAGGATGCACAGAATCGAATGGAAGAGAAAGGAAGCATGTGTCCCGTATTCCTTTTCTTTTCGGTATGCTATCAAGTTCAATCTCTGTTCTGTTAAGACCTACGGCCCGTTTGTGTTTTATTTGCTCATTTATTTATCTTAGAAAAATACGACTCACATCAGTGTTTTGATAATTGTTGAGTTCAGGTCAACGCTAGTGGTCAATTTTGTGGAGTAGCCGAGATGATTGGACGAGTGGATTTCAACAAAAGTATGGATTTCTGGCAGCAAGATAAATGGAACGGATATTTCCCTGTCAAATGGCACATTATAAAAGATATTCCAAATCCTCAGCTACGGCATATTATCCTCGAGAATAATGATCACAAGCCTGTAACAAATAGTAGAGACACTCAAGAGGTTTGCATTTTTTTAACATTCTATTAAAGCAACTGTTTACAGAAATGTCCTAGTTATTTCTTCTGTATCTTCACTATTGTGTTAATTGTGTTAATGTTTCGACTTTCCAGATTCATTTTCCGCAAGGTATTGAAATGCTCAACATTTTCAAAAACTATGTATCGAGAACATCGATATTGGATGATTTTGATTTTTACGAAACCCGTCAGAAGGTCATGCAAGAGAAGAAAATAAGACAACCTATGCCACATACCAATGTACAGGTTTGATTTTACACTTGTACCTTGTTCTTATTCCAAAGTTCTTACTTCTTACTAATGATAGCACTAGCACTAGCACATATTGATTCCAATGAATTCTTTTTTGACATTATTGATGGATGAGTGCATGTGATTGTGGACCATTTTTGCATAATTGTGGTTGGAGGAATCCTTTCACAATATTTAATAAATGCCTAGTTGACAAACTATTCTAAACTTGATACCCTTTTTGGAATAATTTGGAGTTGGGAAATCTCAAAGTAATTAATAACTCTTTGGAGCATGTTCTTTTATTTATCTCTTTTGTATTTCCCAATTCTTTATTTTTCTACTATGGTTGATGTGTTCTTTTGGTGTCCAATAATTTATTTAGAAGTCTTAGACCCACCTTTTTAATTGTGTTACAATTATGTCCCTTCTTTACTTTTCATTTATATAAAACTCCCAAATTTTCATAATCTACTCATAATTTTCACACATTTAATCAGCTAAGTTTTTTTACACTTATTTTTACTCGAAACTCGGCAAAACAATTCAAGACTAATAGTTGTGCATAGTCCAAACTAGTCCAACCGAAAAAACCCTTTCATTTCTTTAGTTTTTGCTTTGATCTCTTTGCTTATATATAATTTTGGTTGCAGCATATAGAAGACTTAACAAGTGCACTTGGATCAGTAGACATATCAGCTGTAAAGAACATGGAGGATCCTAAGTTGGTTGTAAAGAACATGGAGGATCCTAAGTTGGTTGAGAAAGTGAATGACTGA

Protein sequence

>MS.gene071540.t1

MAAELKKAADEMNKKKLHGDSSTAEHNNSNMVSSKGGGSSPSDARSCVSSIGDASGSFKEGDVDHEFQSTDQNVAYSAGSYYGYYYPGYGGFYGEQENQGYYVGADAMDFQYPVMQADNGSYVYLMPGYQTGYSSYFPVNTPGVDVQYQVYPPGSVFQQPIGSPGYISPYGELLPSTYSWDSSLTTQDVAQGNRYNELASKPSGRSIFSSQSRTGSANSSEVKGLPPILDVSSTHVKRNQPKQANKASISGPVLHSDAMPKGSFPVAKFSTYNQGKSGFPYQNNFPNMKATSTKGWVSTEKLKLRNKVNDSLNEQNQGPRTVNAKGTLNSGGNSGDKSVNGDTKIRTDQHNLPDFPTKYDHALFFVIKSYSEDDVHKSIKYDVWASTPNGNKRLDNAFQDAQNRMEEKGSMCPVFLFFSVNASGQFCGVAEMIGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDIPNPQLRHIILENNDHKPVTNSRDTQEIHFPQGIEMLNIFKNYVSRTSILDDFDFYETRQKVMQEKKIRQPMPHTNVQHIEDLTSALGSVDISAVKNMEDPKLVVKNMEDPKLVEKVND