Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75598.t1 | XP_003601798.1 | 97.8 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 1.20E-93 | 352.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75598.t1 | P51413 | 88.0 | 175 | 21 | 0 | 1 | 175 | 1 | 175 | 2.9e-83 | 309.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75598.t1 | G7JC06 | 97.8 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 8.8e-94 | 352.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene75598 | 0.874086 | 8.89E-68 | -1.69E-46 |
| MS.gene049376 | MS.gene75598 | 0.845695 | 3.46E-59 | -1.69E-46 |
| MS.gene051568 | MS.gene75598 | -0.819789 | 9.66E-53 | -1.69E-46 |
| MS.gene051924 | MS.gene75598 | 0.82855 | 8.45E-55 | -1.69E-46 |
| MS.gene051925 | MS.gene75598 | 0.833544 | 5.02E-56 | -1.69E-46 |
| MS.gene051926 | MS.gene75598 | 0.829216 | 5.83E-55 | -1.69E-46 |
| MS.gene051927 | MS.gene75598 | 0.843021 | 1.81E-58 | -1.69E-46 |
| MS.gene052333 | MS.gene75598 | -0.80798 | 3.88E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene75598 | -0.814706 | 1.34E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene75598 | -0.814058 | 1.87E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene75598 | -0.82516 | 5.45E-54 | -1.69E-46 |
| MS.gene053176 | MS.gene75598 | -0.814991 | 1.16E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene75598 | -0.814041 | 1.89E-51 | -1.69E-46 |
| MS.gene054548 | MS.gene75598 | -0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene05491 | MS.gene75598 | 0.817617 | 3.01E-52 | -1.69E-46 |
| MS.gene055453 | MS.gene75598 | 0.830724 | 2.50E-55 | -1.69E-46 |
| MS.gene055454 | MS.gene75598 | 0.82273 | 2.03E-53 | -1.69E-46 |
| MS.gene055455 | MS.gene75598 | 0.866872 | 2.08E-65 | -1.69E-46 |
| MS.gene055701 | MS.gene75598 | -0.802129 | 6.49E-49 | -1.69E-46 |
| MS.gene05595 | MS.gene75598 | -0.832402 | 9.65E-56 | -1.69E-46 |
| MS.gene057156 | MS.gene75598 | 0.838029 | 3.67E-57 | -1.69E-46 |
| MS.gene05872 | MS.gene75598 | -0.814854 | 1.25E-51 | -1.69E-46 |
| MS.gene059162 | MS.gene75598 | -0.800419 | 1.45E-48 | -1.69E-46 |
| MS.gene060010 | MS.gene75598 | -0.80219 | 6.31E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75598.t1 | MTR_3g085490 | 97.802 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 8.56e-135 | 374 |
| MS.gene75598.t1 | MTR_8g080460 | 97.688 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 1.12e-127 | 356 |
| MS.gene75598.t1 | MTR_3g085490 | 98.137 | 161 | 3 | 0 | 1 | 161 | 1 | 161 | 1.33e-119 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75598.t1 | AT1G67430 | 88.000 | 175 | 21 | 0 | 1 | 175 | 1 | 175 | 1.00e-115 | 326 |
| MS.gene75598.t1 | AT1G27400 | 88.953 | 172 | 19 | 0 | 1 | 172 | 1 | 172 | 3.05e-115 | 325 |
| MS.gene75598.t1 | AT1G67430 | 65.143 | 175 | 17 | 1 | 1 | 175 | 1 | 131 | 1.04e-72 | 215 |
Find 55 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGTTTGTTGCCAAC+TGG | 0.236433 | 3.3:-71356331 | None:intergenic |
| AACATCTTCTAAGTATCTTT+TGG | 0.263817 | 3.3:-71355662 | None:intergenic |
| AACAACGCAATACCTCTTTC+TGG | 0.294555 | 3.3:-71356227 | None:intergenic |
| AAGATACTTAGAAGATGTTT+TGG | 0.295183 | 3.3:+71355666 | MS.gene75598:CDS |
| GGTGGGATTGTCGGGCTCTT+TGG | 0.298164 | 3.3:-71354514 | None:intergenic |
| CTTCTTGTTTGTTGCCAACT+GGG | 0.310845 | 3.3:-71356330 | None:intergenic |
| GTTTGTTGCCAACTGGGTCT+CGG | 0.315567 | 3.3:-71356324 | None:intergenic |
| AACCCTAAGGTCAGCACCTC+TGG | 0.343663 | 3.3:-71354656 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 3.3:+71355713 | MS.gene75598:CDS |
| AGGCCAGAGGTGCTGACCTT+AGG | 0.368932 | 3.3:+71354653 | MS.gene75598:CDS |
| TAGAGTGTCTGTTCTTAGCT+TGG | 0.376754 | 3.3:-71355744 | None:intergenic |
| TGACCTTAGGGTTCATTTCA+AGG | 0.383447 | 3.3:+71354666 | MS.gene75598:CDS |
| AAGGTCAGCACCTCTGGCCT+TGG | 0.384955 | 3.3:-71354650 | None:intergenic |
| TTACATTTGGTGGGATTGTC+GGG | 0.385846 | 3.3:-71354522 | None:intergenic |
| GGCCAGAGGTGCTGACCTTA+GGG | 0.395315 | 3.3:+71354654 | MS.gene75598:CDS |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.397264 | 3.3:+71355712 | MS.gene75598:CDS |
| AGAGTGTCTGTTCTTAGCTT+GGG | 0.404467 | 3.3:-71355743 | None:intergenic |
| GCTAAGAACAGACACTCTAA+TGG | 0.408761 | 3.3:+71355748 | MS.gene75598:CDS |
| TTTGTTGCCAACTGGGTCTC+GGG | 0.429555 | 3.3:-71356323 | None:intergenic |
| GGGAAACAGCGTTTGCCATC+AGG | 0.433818 | 3.3:+71355620 | MS.gene75598:CDS |
| ATTACATTTGGTGGGATTGT+CGG | 0.454131 | 3.3:-71354523 | None:intergenic |
| TCACTTCTAGGTGAAAGGTT+TGG | 0.454273 | 3.3:+71355959 | MS.gene75598:intron |
| CTAAGAACAGACACTCTAAT+GGG | 0.469410 | 3.3:+71355749 | MS.gene75598:CDS |
| GATGGCAAACGCTGTTTCCC+TGG | 0.472125 | 3.3:-71355617 | None:intergenic |
| ATGAATTTAGCTGACTTGAC+AGG | 0.481469 | 3.3:-71355784 | None:intergenic |
| TGAAAGGAATGGCCTGTTTG+TGG | 0.487121 | 3.3:-71355690 | None:intergenic |
| AACAAAGAAGACGTACCTAC+AGG | 0.490498 | 3.3:+71356030 | MS.gene75598:CDS |
| GAAAGGAATGGCCTGTTTGT+GGG | 0.496437 | 3.3:-71355689 | None:intergenic |
| CCTTTCAGACGTTTCTGTCG+TGG | 0.497413 | 3.3:+71355706 | MS.gene75598:CDS |
| ATTGTTCACTTCTAGGTGAA+AGG | 0.499870 | 3.3:+71355954 | MS.gene75598:intron |
| AGACGTACCTACAGGGCTCA+TGG | 0.520971 | 3.3:+71356038 | MS.gene75598:CDS |
| ACTCTAATGGGCAAGGACGC+TGG | 0.524787 | 3.3:+71355761 | MS.gene75598:CDS |
| AGAGAGGAATTACATTTGGT+GGG | 0.528638 | 3.3:-71354531 | None:intergenic |
| TCTCTACGTGTCTCATATCC+AGG | 0.529280 | 3.3:+71355992 | MS.gene75598:CDS |
| GAGAGAGGAATTACATTTGG+TGG | 0.535354 | 3.3:-71354532 | None:intergenic |
| ATCTGTAATTGCAGCAACCA+AGG | 0.554826 | 3.3:+71354633 | MS.gene75598:intron |
| GGTCAGGGGCAACTTCCTGA+TGG | 0.558655 | 3.3:-71355635 | None:intergenic |
| GGAAGAGGCTGTCCAGAAAG+AGG | 0.559016 | 3.3:+71356215 | MS.gene75598:CDS |
| GATTCTTCCATGAGCCCTGT+AGG | 0.559080 | 3.3:-71356045 | None:intergenic |
| TTACCTTGAAATGAACCCTA+AGG | 0.566981 | 3.3:-71354669 | None:intergenic |
| GATACTATCTGAGAAGGAAG+AGG | 0.578357 | 3.3:+71356200 | MS.gene75598:CDS |
| CCACGACAGAAACGTCTGAA+AGG | 0.578584 | 3.3:-71355706 | None:intergenic |
| CTAGGTGAAAGGTTTGGATG+TGG | 0.599987 | 3.3:+71355965 | MS.gene75598:intron |
| TCTGTAGCCCGAGACCCAGT+TGG | 0.601405 | 3.3:+71356316 | MS.gene75598:intron |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.606753 | 3.3:+71355716 | MS.gene75598:CDS |
| CTCTTTGGAGTACTTCACCA+TGG | 0.611437 | 3.3:-71354499 | None:intergenic |
| ACAAAGAAGACGTACCTACA+GGG | 0.613276 | 3.3:+71356031 | MS.gene75598:CDS |
| CGAACTGATACTATCTGAGA+AGG | 0.615825 | 3.3:+71356194 | MS.gene75598:CDS |
| AACAGACACTCTAATGGGCA+AGG | 0.616551 | 3.3:+71355754 | MS.gene75598:CDS |
| ACAGAAACGTCTGAAAGGAA+TGG | 0.620803 | 3.3:-71355701 | None:intergenic |
| AAGTCTCAAGCTGTTCGAAG+TGG | 0.631486 | 3.3:+71356353 | MS.gene75598:CDS |
| AGTATCAGTTCGATGTGGCA+AGG | 0.635093 | 3.3:-71356183 | None:intergenic |
| ATTGCAGCAACCAAGGCCAG+AGG | 0.682613 | 3.3:+71354640 | MS.gene75598:intron |
| GTGGCAAGGAGATGACATGT+AGG | 0.691037 | 3.3:-71356169 | None:intergenic |
| CAGATAGTATCAGTTCGATG+TGG | 0.705561 | 3.3:-71356188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAATACATATGAA+GGG | - | chr3.3:71355358-71355377 | None:intergenic | 10.0% |
| !! | TTAAAAATAAATACATATGA+AGG | - | chr3.3:71355359-71355378 | None:intergenic | 10.0% |
| !!! | AATTAACTTTTTTATCCAAA+AGG | - | chr3.3:71355087-71355106 | None:intergenic | 15.0% |
| !! | ACAAAATGCAATTTATCTAT+AGG | - | chr3.3:71355032-71355051 | None:intergenic | 20.0% |
| !! | GATTAATTTAACCTAATTTG+TGG | + | chr3.3:71354605-71354624 | MS.gene75598:intron | 20.0% |
| !! | TATTATTCATAATCTTGTCA+AGG | + | chr3.3:71354871-71354890 | MS.gene75598:intron | 20.0% |
| !!! | CGGTGTTTTTTTTTTTTTTT+TGG | + | chr3.3:71356143-71356162 | MS.gene75598:intron | 20.0% |
| ! | ATTAGTTGAAAATGGTCATT+TGG | + | chr3.3:71355318-71355337 | MS.gene75598:intron | 25.0% |
| ! | CAATTTATCTATAGGACATA+GGG | - | chr3.3:71355024-71355043 | None:intergenic | 25.0% |
| ! | GCATTCTTATACTTATATAC+TGG | + | chr3.3:71356120-71356139 | MS.gene75598:intron | 25.0% |
| ! | TTCTTATACTTATATACTGG+CGG | + | chr3.3:71356123-71356142 | MS.gene75598:intron | 25.0% |
| !! | AACATCTTCTAAGTATCTTT+TGG | - | chr3.3:71355665-71355684 | None:intergenic | 25.0% |
| !! | AAGATACTTAGAAGATGTTT+TGG | + | chr3.3:71355666-71355685 | MS.gene75598:CDS | 25.0% |
| !! | ATCAGTAGATTAGTTGAAAA+TGG | + | chr3.3:71355310-71355329 | MS.gene75598:intron | 25.0% |
| !! | TATTCTTATTTGTGTTTGGA+TGG | + | chr3.3:71356083-71356102 | MS.gene75598:intron | 25.0% |
| !!! | ACTTTTTTATCCAAAAGGTA+AGG | - | chr3.3:71355082-71355101 | None:intergenic | 25.0% |
| AAACATAAGCCAATCCAAAA+GGG | - | chr3.3:71354822-71354841 | None:intergenic | 30.0% | |
| AAGTCATAAGTTCTCACTAA+CGG | - | chr3.3:71354933-71354952 | None:intergenic | 30.0% | |
| ACAGATCAAAACCACAAATT+AGG | - | chr3.3:71354619-71354638 | None:intergenic | 30.0% | |
| AGTGGAGATGAAAATTCAAA+AGG | - | chr3.3:71356259-71356278 | None:intergenic | 30.0% | |
| CTAAGAACAAAAACAACAAC+AGG | - | chr3.3:71355550-71355569 | None:intergenic | 30.0% | |
| GCAATTTATCTATAGGACAT+AGG | - | chr3.3:71355025-71355044 | None:intergenic | 30.0% | |
| GTAGAGATAGATCATGATAT+AGG | + | chr3.3:71354721-71354740 | MS.gene75598:intron | 30.0% | |
| TAGCTGATCTAGTGAATTTA+CGG | + | chr3.3:71354795-71354814 | MS.gene75598:intron | 30.0% | |
| TTGTTTGATTGTTCACTTCT+AGG | + | chr3.3:71355947-71355966 | MS.gene75598:intron | 30.0% | |
| ! | ATTTTCATCTCCACTCTAAA+AGG | + | chr3.3:71356264-71356283 | MS.gene75598:intron | 30.0% |
| ! | GCACTATTCTTATTTGTGTT+TGG | + | chr3.3:71356079-71356098 | MS.gene75598:intron | 30.0% |
| !! | TTTTCATCTCCACTCTAAAA+GGG | + | chr3.3:71356265-71356284 | MS.gene75598:intron | 30.0% |
| !!! | TTCTAAGTATCTTTTGGCTT+TGG | - | chr3.3:71355659-71355678 | None:intergenic | 30.0% |
| AGAGAGGAATTACATTTGGT+GGG | - | chr3.3:71354534-71354553 | None:intergenic | 35.0% | |
| AGCTGATCTAGTGAATTTAC+GGG | + | chr3.3:71354796-71354815 | MS.gene75598:intron | 35.0% | |
| ATACATATGAAGGGCAAGTT+TGG | - | chr3.3:71355349-71355368 | None:intergenic | 35.0% | |
| ATCGAGAGAGGAATTACATT+TGG | - | chr3.3:71354538-71354557 | None:intergenic | 35.0% | |
| ATGAAAGAAGAAATCGAGAG+AGG | - | chr3.3:71354550-71354569 | None:intergenic | 35.0% | |
| ATTGTTCACTTCTAGGTGAA+AGG | + | chr3.3:71355954-71355973 | MS.gene75598:intron | 35.0% | |
| CAAACATAAGCCAATCCAAA+AGG | - | chr3.3:71354823-71354842 | None:intergenic | 35.0% | |
| CTAAGAACAGACACTCTAAT+GGG | + | chr3.3:71355749-71355768 | MS.gene75598:CDS | 35.0% | |
| TAAGCACTAATGAGAATCGT+TGG | - | chr3.3:71355289-71355308 | None:intergenic | 35.0% | |
| TATAGGACATAGGGTTCATT+TGG | - | chr3.3:71355015-71355034 | None:intergenic | 35.0% | |
| TGCAGTTTGATACGTTTAAC+TGG | + | chr3.3:71355904-71355923 | MS.gene75598:intron | 35.0% | |
| TTACCTTGAAATGAACCCTA+AGG | - | chr3.3:71354672-71354691 | None:intergenic | 35.0% | |
| TTATTTCCCTATGCTCTCAA+AGG | - | chr3.3:71355221-71355240 | None:intergenic | 35.0% | |
| ! | AACTATCCTTTGAGAGCATA+GGG | + | chr3.3:71355212-71355231 | MS.gene75598:intron | 35.0% |
| ! | ATTACATTTGGTGGGATTGT+CGG | - | chr3.3:71354526-71354545 | None:intergenic | 35.0% |
| ! | TTATAACCTGCCTTACCTTT+TGG | + | chr3.3:71355069-71355088 | MS.gene75598:intron | 35.0% |
| ! | TTTTATCCAAAAGGTAAGGC+AGG | - | chr3.3:71355078-71355097 | None:intergenic | 35.0% |
| !! | ATGAATTTAGCTGACTTGAC+AGG | - | chr3.3:71355787-71355806 | None:intergenic | 35.0% |
| !! | GATACAATACCCTTTTAGAG+TGG | - | chr3.3:71356277-71356296 | None:intergenic | 35.0% |
| !!! | TCAATTTTGGTGGACTAGTT+TGG | + | chr3.3:71355504-71355523 | MS.gene75598:intron | 35.0% |
| AACAAAGAAGACGTACCTAC+AGG | + | chr3.3:71356030-71356049 | MS.gene75598:CDS | 40.0% | |
| AACAACGCAATACCTCTTTC+TGG | - | chr3.3:71356230-71356249 | None:intergenic | 40.0% | |
| ACAAAGAAGACGTACCTACA+GGG | + | chr3.3:71356031-71356050 | MS.gene75598:CDS | 40.0% | |
| ACAGAAACGTCTGAAAGGAA+TGG | - | chr3.3:71355704-71355723 | None:intergenic | 40.0% | |
| ACCATCATGGCAAATCAAGT+GGG | - | chr3.3:71355424-71355443 | None:intergenic | 40.0% | |
| ATCTGTAATTGCAGCAACCA+AGG | + | chr3.3:71354633-71354652 | MS.gene75598:intron | 40.0% | |
| CAGATAGTATCAGTTCGATG+TGG | - | chr3.3:71356191-71356210 | None:intergenic | 40.0% | |
| CGAACTGATACTATCTGAGA+AGG | + | chr3.3:71356194-71356213 | MS.gene75598:CDS | 40.0% | |
| GACATAGGGTTCATTTGGAT+TGG | - | chr3.3:71355010-71355029 | None:intergenic | 40.0% | |
| GAGAATCGTTGGAAGACATA+TGG | - | chr3.3:71355278-71355297 | None:intergenic | 40.0% | |
| GAGAGAGGAATTACATTTGG+TGG | - | chr3.3:71354535-71354554 | None:intergenic | 40.0% | |
| GATACTATCTGAGAAGGAAG+AGG | + | chr3.3:71356200-71356219 | MS.gene75598:CDS | 40.0% | |
| GCTAAGAACAGACACTCTAA+TGG | + | chr3.3:71355748-71355767 | MS.gene75598:CDS | 40.0% | |
| TCACTTCTAGGTGAAAGGTT+TGG | + | chr3.3:71355959-71355978 | MS.gene75598:intron | 40.0% | |
| TCCACCAAAATTGACACCAA+GGG | - | chr3.3:71355498-71355517 | None:intergenic | 40.0% | |
| TGACCTTAGGGTTCATTTCA+AGG | + | chr3.3:71354666-71354685 | MS.gene75598:CDS | 40.0% | |
| ! | AGAGTGTCTGTTCTTAGCTT+GGG | - | chr3.3:71355746-71355765 | None:intergenic | 40.0% |
| ! | ATTTTACTGTGCAGAACACC+AGG | + | chr3.3:71355599-71355618 | MS.gene75598:intron | 40.0% |
| ! | CTTCTTGTTTGTTGCCAACT+GGG | - | chr3.3:71356333-71356352 | None:intergenic | 40.0% |
| ! | GAACTATCCTTTGAGAGCAT+AGG | + | chr3.3:71355211-71355230 | MS.gene75598:intron | 40.0% |
| ! | GGCAAATCAAGTGGGTTTAA+AGG | - | chr3.3:71355416-71355435 | None:intergenic | 40.0% |
| ! | TAGAGTGTCTGTTCTTAGCT+TGG | - | chr3.3:71355747-71355766 | None:intergenic | 40.0% |
| ! | TCTTCTTGTTTGTTGCCAAC+TGG | - | chr3.3:71356334-71356353 | None:intergenic | 40.0% |
| ! | TTACATTTGGTGGGATTGTC+GGG | - | chr3.3:71354525-71354544 | None:intergenic | 40.0% |
| ! | TTTTACTGTGCAGAACACCA+GGG | + | chr3.3:71355600-71355619 | MS.gene75598:intron | 40.0% |
| !! | GTTTTTGAGCTTGATTGACC+TGG | - | chr3.3:71356013-71356032 | None:intergenic | 40.0% |
| !!! | AGTATCTTTTGGCTTTGGTC+AGG | - | chr3.3:71355654-71355673 | None:intergenic | 40.0% |
| !!! | GTATCTTTTGGCTTTGGTCA+GGG | - | chr3.3:71355653-71355672 | None:intergenic | 40.0% |
| !!! | TATCTTTTGGCTTTGGTCAG+GGG | - | chr3.3:71355652-71355671 | None:intergenic | 40.0% |
| !!! | TTTCCCCTTGGTGTCAATTT+TGG | + | chr3.3:71355491-71355510 | MS.gene75598:intron | 40.0% |
| AACAAACCTGAGACCTTTGG+AGG | - | chr3.3:71355473-71355492 | None:intergenic | 45.0% | |
| AAGTCTCAAGCTGTTCGAAG+TGG | + | chr3.3:71356353-71356372 | MS.gene75598:CDS | 45.0% | |
| AGTATCAGTTCGATGTGGCA+AGG | - | chr3.3:71356186-71356205 | None:intergenic | 45.0% | |
| CACCATCATGGCAAATCAAG+TGG | - | chr3.3:71355425-71355444 | None:intergenic | 45.0% | |
| CCACCAAAATTGACACCAAG+GGG | - | chr3.3:71355497-71355516 | None:intergenic | 45.0% | |
| CTAGGTGAAAGGTTTGGATG+TGG | + | chr3.3:71355965-71355984 | MS.gene75598:intron | 45.0% | |
| GAAAGGAATGGCCTGTTTGT+GGG | - | chr3.3:71355692-71355711 | None:intergenic | 45.0% | |
| GATCAGCTATTCTGACAGCT+CGG | - | chr3.3:71354784-71354803 | None:intergenic | 45.0% | |
| GGAAACAAACCTGAGACCTT+TGG | - | chr3.3:71355476-71355495 | None:intergenic | 45.0% | |
| GTCCACCAAAATTGACACCA+AGG | - | chr3.3:71355499-71355518 | None:intergenic | 45.0% | |
| TCTCTACGTGTCTCATATCC+AGG | + | chr3.3:71355992-71356011 | MS.gene75598:CDS | 45.0% | |
| TGAAAGGAATGGCCTGTTTG+TGG | - | chr3.3:71355693-71355712 | None:intergenic | 45.0% | |
| ! | AACAGACACTCTAATGGGCA+AGG | + | chr3.3:71355754-71355773 | MS.gene75598:CDS | 45.0% |
| ! | AGTGAATTTACGGGCCCTTT+TGG | + | chr3.3:71354805-71354824 | MS.gene75598:intron | 45.0% |
| ! | ATTTACGGGCCCTTTTGGAT+TGG | + | chr3.3:71354810-71354829 | MS.gene75598:intron | 45.0% |
| !! | ACCCACTTGATTTGCCATGA+TGG | + | chr3.3:71355420-71355439 | MS.gene75598:intron | 45.0% |
| !! | TGCCATGATGGTGTTGACTT+GGG | + | chr3.3:71355432-71355451 | MS.gene75598:intron | 45.0% |
| !! | TTGCCATGATGGTGTTGACT+TGG | + | chr3.3:71355431-71355450 | MS.gene75598:intron | 45.0% |
| !!! | AGATGTTTTGGCCCACAAAC+AGG | + | chr3.3:71355678-71355697 | MS.gene75598:CDS | 45.0% |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr3.3:71355712-71355731 | MS.gene75598:CDS | 50.0% | |
| CCACGACAGAAACGTCTGAA+AGG | - | chr3.3:71355709-71355728 | None:intergenic | 50.0% | |
| CCTTTCAGACGTTTCTGTCG+TGG | + | chr3.3:71355706-71355725 | MS.gene75598:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr3.3:71355713-71355732 | MS.gene75598:CDS | 50.0% | |
| GATTCTTCCATGAGCCCTGT+AGG | - | chr3.3:71356048-71356067 | None:intergenic | 50.0% | |
| GTGGCAAGGAGATGACATGT+AGG | - | chr3.3:71356172-71356191 | None:intergenic | 50.0% | |
| TTTGTTGCCAACTGGGTCTC+GGG | - | chr3.3:71356326-71356345 | None:intergenic | 50.0% | |
| ! | GTCTCAGGTTTGTTTCCCCT+TGG | + | chr3.3:71355479-71355498 | MS.gene75598:intron | 50.0% |
| ! | GTTTGTTGCCAACTGGGTCT+CGG | - | chr3.3:71356327-71356346 | None:intergenic | 50.0% |
| !! | GCCATGATGGTGTTGACTTG+GGG | + | chr3.3:71355433-71355452 | MS.gene75598:intron | 50.0% |
| !!! | CCCCTTGGTGTCAATTTTGG+TGG | + | chr3.3:71355494-71355513 | MS.gene75598:intron | 50.0% |
| AACCCTAAGGTCAGCACCTC+TGG | - | chr3.3:71354659-71354678 | None:intergenic | 55.0% | |
| AGACGTACCTACAGGGCTCA+TGG | + | chr3.3:71356038-71356057 | MS.gene75598:CDS | 55.0% | |
| AGTGCTCCTCCAAAGGTCTC+AGG | + | chr3.3:71355464-71355483 | MS.gene75598:intron | 55.0% | |
| ATTGCAGCAACCAAGGCCAG+AGG | + | chr3.3:71354640-71354659 | MS.gene75598:intron | 55.0% | |
| GCCCCAAGTCAACACCATCA+TGG | - | chr3.3:71355437-71355456 | None:intergenic | 55.0% | |
| GGAAGAGGCTGTCCAGAAAG+AGG | + | chr3.3:71356215-71356234 | MS.gene75598:CDS | 55.0% | |
| GGGAAACAGCGTTTGCCATC+AGG | + | chr3.3:71355620-71355639 | MS.gene75598:CDS | 55.0% | |
| ! | ACTCTAATGGGCAAGGACGC+TGG | + | chr3.3:71355761-71355780 | MS.gene75598:CDS | 55.0% |
| ! | GATGGCAAACGCTGTTTCCC+TGG | - | chr3.3:71355620-71355639 | None:intergenic | 55.0% |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr3.3:71355716-71355735 | MS.gene75598:CDS | 55.0% |
| !! | ATGGTGTTGACTTGGGGCCT+TGG | + | chr3.3:71355439-71355458 | MS.gene75598:intron | 55.0% |
| !! | CTTGGAGAGTGCTCCTCCAA+AGG | + | chr3.3:71355457-71355476 | MS.gene75598:intron | 55.0% |
| !! | CTTTGGAGGAGCACTCTCCA+AGG | - | chr3.3:71355459-71355478 | None:intergenic | 55.0% |
| AAGGTCAGCACCTCTGGCCT+TGG | - | chr3.3:71354653-71354672 | None:intergenic | 60.0% | |
| GGTCAGGGGCAACTTCCTGA+TGG | - | chr3.3:71355638-71355657 | None:intergenic | 60.0% | |
| GGTGGGATTGTCGGGCTCTT+TGG | - | chr3.3:71354517-71354536 | None:intergenic | 60.0% | |
| TCTGTAGCCCGAGACCCAGT+TGG | + | chr3.3:71356316-71356335 | MS.gene75598:intron | 60.0% | |
| !! | AGGCCAGAGGTGCTGACCTT+AGG | + | chr3.3:71354653-71354672 | MS.gene75598:CDS | 60.0% |
| !! | GGCCAGAGGTGCTGACCTTA+GGG | + | chr3.3:71354654-71354673 | MS.gene75598:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 71354501 | 71356388 | 71354501 | ID=MS.gene75598 |
| chr3.3 | mRNA | 71354501 | 71356388 | 71354501 | ID=MS.gene75598.t1;Parent=MS.gene75598 |
| chr3.3 | exon | 71354501 | 71354540 | 71354501 | ID=MS.gene75598.t1.exon1;Parent=MS.gene75598.t1 |
| chr3.3 | CDS | 71354501 | 71354540 | 71354501 | ID=cds.MS.gene75598.t1;Parent=MS.gene75598.t1 |
| chr3.3 | exon | 71354647 | 71354687 | 71354647 | ID=MS.gene75598.t1.exon2;Parent=MS.gene75598.t1 |
| chr3.3 | CDS | 71354647 | 71354687 | 71354647 | ID=cds.MS.gene75598.t1;Parent=MS.gene75598.t1 |
| chr3.3 | exon | 71355613 | 71355843 | 71355613 | ID=MS.gene75598.t1.exon3;Parent=MS.gene75598.t1 |
| chr3.3 | CDS | 71355613 | 71355843 | 71355613 | ID=cds.MS.gene75598.t1;Parent=MS.gene75598.t1 |
| chr3.3 | exon | 71355969 | 71356071 | 71355969 | ID=MS.gene75598.t1.exon4;Parent=MS.gene75598.t1 |
| chr3.3 | CDS | 71355969 | 71356071 | 71355969 | ID=cds.MS.gene75598.t1;Parent=MS.gene75598.t1 |
| chr3.3 | exon | 71356169 | 71356236 | 71356169 | ID=MS.gene75598.t1.exon5;Parent=MS.gene75598.t1 |
| chr3.3 | CDS | 71356169 | 71356236 | 71356169 | ID=cds.MS.gene75598.t1;Parent=MS.gene75598.t1 |
| chr3.3 | exon | 71356323 | 71356388 | 71356323 | ID=MS.gene75598.t1.exon6;Parent=MS.gene75598.t1 |
| chr3.3 | CDS | 71356323 | 71356388 | 71356323 | ID=cds.MS.gene75598.t1;Parent=MS.gene75598.t1 |
| Gene Sequence |
| Protein sequence |
