Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40743.t1 | XP_013458571.1 | 100 | 292 | 0 | 0 | 20 | 311 | 179 | 470 | 7.00E-166 | 593.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40743.t1 | Q8WV93 | 41.2 | 306 | 161 | 6 | 25 | 311 | 157 | 462 | 1.4e-53 | 211.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40743.t1 | A0A072USG5 | 100.0 | 292 | 0 | 0 | 20 | 311 | 179 | 470 | 5.1e-166 | 593.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene40743 | 0.821634 | 3.64E-53 | -1.69E-46 |
| MS.gene051122 | MS.gene40743 | 0.850435 | 1.70E-60 | -1.69E-46 |
| MS.gene05216 | MS.gene40743 | 0.816429 | 5.56E-52 | -1.69E-46 |
| MS.gene052674 | MS.gene40743 | 0.85229 | 5.09E-61 | -1.69E-46 |
| MS.gene052675 | MS.gene40743 | 0.850433 | 1.70E-60 | -1.69E-46 |
| MS.gene052677 | MS.gene40743 | 0.855482 | 6.13E-62 | -1.69E-46 |
| MS.gene054479 | MS.gene40743 | 0.809159 | 2.17E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene40743 | 0.824045 | 9.98E-54 | -1.69E-46 |
| MS.gene056779 | MS.gene40743 | 0.815825 | 7.58E-52 | -1.69E-46 |
| MS.gene058081 | MS.gene40743 | 0.809782 | 1.60E-50 | -1.69E-46 |
| MS.gene058223 | MS.gene40743 | -0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene060010 | MS.gene40743 | 0.804144 | 2.49E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene40743 | 0.863879 | 1.82E-64 | -1.69E-46 |
| MS.gene060851 | MS.gene40743 | 0.878286 | 3.18E-69 | -1.69E-46 |
| MS.gene060852 | MS.gene40743 | 0.875792 | 2.33E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40743.t1 | MTR_4g129950 | 99.659 | 293 | 1 | 0 | 19 | 311 | 178 | 470 | 0.0 | 605 |
| MS.gene40743.t1 | MTR_4g129950 | 97.549 | 204 | 5 | 0 | 19 | 222 | 178 | 381 | 1.86e-146 | 417 |
| MS.gene40743.t1 | MTR_1g012370 | 35.047 | 214 | 132 | 3 | 63 | 269 | 181 | 394 | 2.36e-35 | 134 |
| MS.gene40743.t1 | MTR_1g012370 | 35.047 | 214 | 132 | 3 | 63 | 269 | 204 | 417 | 2.41e-35 | 134 |
| MS.gene40743.t1 | MTR_1g012370 | 35.047 | 214 | 132 | 3 | 63 | 269 | 305 | 518 | 4.68e-35 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40743.t1 | AT4G28070 | 76.792 | 293 | 68 | 0 | 19 | 311 | 156 | 448 | 5.46e-171 | 483 |
| MS.gene40743.t1 | AT4G30490 | 76.531 | 294 | 68 | 1 | 19 | 311 | 184 | 477 | 2.74e-170 | 482 |
| MS.gene40743.t1 | AT4G28070 | 73.720 | 293 | 68 | 1 | 19 | 311 | 156 | 439 | 8.87e-161 | 456 |
| MS.gene40743.t1 | AT2G25530 | 31.868 | 273 | 172 | 5 | 8 | 269 | 300 | 569 | 1.38e-36 | 139 |
| MS.gene40743.t1 | AT2G25530 | 30.802 | 237 | 150 | 5 | 8 | 233 | 300 | 533 | 2.25e-28 | 114 |
Find 67 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAGCTGCAGATTATTT+TGG | 0.152535 | 8.3:+1639451 | MS.gene40743:CDS |
| CATTACTACTTCCACTTCTT+GGG | 0.228752 | 8.3:-1639247 | None:intergenic |
| CCATTACTACTTCCACTTCT+TGG | 0.244604 | 8.3:-1639248 | None:intergenic |
| CCACCCTCATATAGATTATC+TGG | 0.285514 | 8.3:-1638850 | None:intergenic |
| AAGCTCTTCAAAAGGAAAAT+AGG | 0.293582 | 8.3:-1639416 | None:intergenic |
| TTTCATACTTTAGCACTTGA+TGG | 0.308394 | 8.3:+1639723 | MS.gene40743:CDS |
| ATTATGCCTTGATGAATTCA+TGG | 0.316826 | 8.3:+1638536 | MS.gene40743:CDS |
| TCTCGATCTCGAAGAGGTCC+TGG | 0.326019 | 8.3:-1640224 | None:intergenic |
| TCATCCCCAGGCCCTCAAAT+TGG | 0.346659 | 8.3:+1638135 | MS.gene40743:intron |
| GGGTGGCCAAGGATTCTATT+TGG | 0.353872 | 8.3:+1639155 | MS.gene40743:intron |
| TATGTAAACTTACTTGTAAT+AGG | 0.356860 | 8.3:-1638205 | None:intergenic |
| TTGGTTGGCAGTGATTCATC+TGG | 0.385310 | 8.3:+1639174 | MS.gene40743:CDS |
| TGCACATAGGTTTGTCACTT+TGG | 0.400483 | 8.3:+1639779 | MS.gene40743:CDS |
| CAGGTCCCGTTGGGAGCTAA+TGG | 0.404694 | 8.3:+1639388 | MS.gene40743:intron |
| ACCCTTCATTGCAACATTGA+AGG | 0.413167 | 8.3:+1638894 | MS.gene40743:CDS |
| CTTTGTGTTGACAATGAACT+AGG | 0.429854 | 8.3:+1640265 | MS.gene40743:CDS |
| ATCAGCTGAACACAATAATC+TGG | 0.439826 | 8.3:-1640140 | None:intergenic |
| TTTCTTCATCAGGTCCCGTT+GGG | 0.444742 | 8.3:+1639379 | MS.gene40743:intron |
| TACCTTCAATGTTGCAATGA+AGG | 0.448596 | 8.3:-1638896 | None:intergenic |
| CAAAAGACCGCACCATTAGT+AGG | 0.449826 | 8.3:+1640293 | MS.gene40743:CDS |
| GGCCAAGGATTCTATTTGGT+TGG | 0.453292 | 8.3:+1639159 | MS.gene40743:CDS |
| GAGCTTTGTGACAAACCTCT+TGG | 0.455322 | 8.3:+1639433 | MS.gene40743:CDS |
| ATATATATCATACCTACTAA+TGG | 0.455546 | 8.3:-1640305 | None:intergenic |
| TGCTCCAGATAATCTATATG+AGG | 0.460863 | 8.3:+1638846 | MS.gene40743:CDS |
| CAAGAAGTGGAAGTAGTAAT+GGG | 0.466955 | 8.3:+1639249 | MS.gene40743:CDS |
| CCAAGAAGTGGAAGTAGTAA+TGG | 0.474250 | 8.3:+1639248 | MS.gene40743:CDS |
| TTTCAGAATTGCGATCCAAT+TGG | 0.474325 | 8.3:-1637664 | None:intergenic |
| TGCCAACCAAATAGAATCCT+TGG | 0.478466 | 8.3:-1639161 | None:intergenic |
| CAAGGGCCTGTCAGATCCAC+TGG | 0.483629 | 8.3:+1638476 | MS.gene40743:CDS |
| CTCGATCTCGAAGAGGTCCT+GGG | 0.489313 | 8.3:-1640223 | None:intergenic |
| TTGTCACAAAGCTCTTCAAA+AGG | 0.489550 | 8.3:-1639424 | None:intergenic |
| GGGTGCCCTTTGTTTAGCCT+CGG | 0.490152 | 8.3:-1640203 | None:intergenic |
| CACATCCATTAGCTCCCAAC+GGG | 0.490986 | 8.3:-1639393 | None:intergenic |
| AGATTATTGTGTTCAGCTGA+TGG | 0.497678 | 8.3:+1640142 | MS.gene40743:CDS |
| AGATGCATAGCTCATGAGAT+TGG | 0.505032 | 8.3:+1639008 | MS.gene40743:CDS |
| GCATGCCGATGAATGCCAAT+TGG | 0.513381 | 8.3:+1637649 | MS.gene40743:CDS |
| ACTTCCACTTCTTGGGGAGT+AGG | 0.514314 | 8.3:-1639240 | None:intergenic |
| TTGGGACTGTAGGGTGGCCA+AGG | 0.517146 | 8.3:+1639144 | MS.gene40743:intron |
| TTTCAGCAGTTGATTGGAGA+AGG | 0.524309 | 8.3:+1639213 | MS.gene40743:CDS |
| ATTACTACTTCCACTTCTTG+GGG | 0.531458 | 8.3:-1639246 | None:intergenic |
| GCGATCCAATTGGCATTCAT+CGG | 0.533556 | 8.3:-1637654 | None:intergenic |
| ACATAGGTTTGTCACTTTGG+TGG | 0.544354 | 8.3:+1639782 | MS.gene40743:CDS |
| GATCCACTGGATGTTGTGGC+AGG | 0.546770 | 8.3:+1638489 | MS.gene40743:CDS |
| AATATCCGAGGCTAAACAAA+GGG | 0.547286 | 8.3:+1640198 | MS.gene40743:CDS |
| AATTTACCATGAATTCATCA+AGG | 0.550011 | 8.3:-1638542 | None:intergenic |
| ATCTGGAGCACGATTTGAAG+TGG | 0.553243 | 8.3:-1638833 | None:intergenic |
| GTCAGATCCACTGGATGTTG+TGG | 0.553770 | 8.3:+1638485 | MS.gene40743:CDS |
| ACCTTCAATGTTGCAATGAA+GGG | 0.553846 | 8.3:-1638895 | None:intergenic |
| TTCAGACATCTATTCAGCAA+AGG | 0.578860 | 8.3:+1638686 | MS.gene40743:CDS |
| TTTGTGTTGACAATGAACTA+GGG | 0.582172 | 8.3:+1640266 | MS.gene40743:CDS |
| CACACCTACTCCCCAAGAAG+TGG | 0.584261 | 8.3:+1639236 | MS.gene40743:CDS |
| ATATGAGGGTGGACTGCAGA+GGG | 0.590233 | 8.3:+1638861 | MS.gene40743:CDS |
| GTAATAAAGCAGCTGCACAT+AGG | 0.592138 | 8.3:+1639766 | MS.gene40743:CDS |
| GCGATTAAGTATCAATGCAT+CGG | 0.592840 | 8.3:-1638660 | None:intergenic |
| TCTCCTGCCACAACATCCAG+TGG | 0.600189 | 8.3:-1638492 | None:intergenic |
| TGTGTCCTTGTAGAAGCACA+AGG | 0.601086 | 8.3:+1638458 | MS.gene40743:intron |
| CAACATCCAGTGGATCTGAC+AGG | 0.604333 | 8.3:-1638482 | None:intergenic |
| TGACTACCGCAAAATGACTT+CGG | 0.612203 | 8.3:+1639040 | MS.gene40743:CDS |
| GCTCCAGATAATCTATATGA+GGG | 0.631147 | 8.3:+1638847 | MS.gene40743:CDS |
| AAATAATCTGCAGCTCCAAG+AGG | 0.636094 | 8.3:-1639448 | None:intergenic |
| CCAGATAATCTATATGAGGG+TGG | 0.640752 | 8.3:+1638850 | MS.gene40743:CDS |
| GCACATCCATTAGCTCCCAA+CGG | 0.641018 | 8.3:-1639394 | None:intergenic |
| CAATATCCGAGGCTAAACAA+AGG | 0.645978 | 8.3:+1640197 | MS.gene40743:CDS |
| TATATGAGGGTGGACTGCAG+AGG | 0.648674 | 8.3:+1638860 | MS.gene40743:CDS |
| TATCATACCTACTAATGGTG+CGG | 0.657100 | 8.3:-1640300 | None:intergenic |
| AGGCTAAACAAAGGGCACCC+AGG | 0.661005 | 8.3:+1640206 | MS.gene40743:CDS |
| GTGTCCTTGTAGAAGCACAA+GGG | 0.667573 | 8.3:+1638459 | MS.gene40743:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTTAATGTTCCAAAA+TGG | - | chr8.3:1639537-1639556 | None:intergenic | 15.0% |
| !!! | ATCTTTAAAATTAGAATTTC+AGG | - | chr8.3:1639986-1640005 | None:intergenic | 15.0% |
| !!! | CTTTGAACATTAATTAATTT+TGG | + | chr8.3:1638350-1638369 | MS.gene40743:intron | 15.0% |
| !!! | GCTTTAAATATTTTTATAGT+TGG | + | chr8.3:1638920-1638939 | MS.gene40743:intron | 15.0% |
| !!! | TATTTGTTTTTATGCTAATT+GGG | + | chr8.3:1639126-1639145 | MS.gene40743:intron | 15.0% |
| !!! | TTATTTGTTTTTATGCTAAT+TGG | + | chr8.3:1639125-1639144 | MS.gene40743:intron | 15.0% |
| !! | AAAAAAAGGATACATCTAAA+AGG | - | chr8.3:1638243-1638262 | None:intergenic | 20.0% |
| !! | ACAAAATTAAGAAATCAAGA+CGG | - | chr8.3:1637967-1637986 | None:intergenic | 20.0% |
| !! | CCAAAAGAATACATAATTAT+TGG | - | chr8.3:1638295-1638314 | None:intergenic | 20.0% |
| !! | GTAAAAGGTTTATATCTTTA+TGG | + | chr8.3:1637868-1637887 | MS.gene40743:intron | 20.0% |
| !! | TATGTAAACTTACTTGTAAT+AGG | - | chr8.3:1638208-1638227 | None:intergenic | 20.0% |
| !! | TTCTTTCATTGTGATAATTT+CGG | + | chr8.3:1639594-1639613 | MS.gene40743:intron | 20.0% |
| !!! | AATATTTTTATAGTTGGAAG+TGG | + | chr8.3:1638926-1638945 | MS.gene40743:intron | 20.0% |
| !!! | ATGGCATAATTTTATATAGA+GGG | - | chr8.3:1640082-1640101 | None:intergenic | 20.0% |
| !!! | CCAATAATTATGTATTCTTT+TGG | + | chr8.3:1638292-1638311 | MS.gene40743:intron | 20.0% |
| !!! | TAAAGATATAAACCTTTTAC+AGG | - | chr8.3:1637868-1637887 | None:intergenic | 20.0% |
| !!! | TATTAAAATATGAAGTGCTT+GGG | - | chr8.3:1639879-1639898 | None:intergenic | 20.0% |
| ! | AAAAATAGTAACAATATCCG+AGG | + | chr8.3:1640186-1640205 | MS.gene40743:CDS | 25.0% |
| ! | AAAGGTTTATATCTTTATGG+AGG | + | chr8.3:1637871-1637890 | MS.gene40743:intron | 25.0% |
| ! | AATTTACCATGAATTCATCA+AGG | - | chr8.3:1638545-1638564 | None:intergenic | 25.0% |
| ! | AGAAGACAAAGTTTAAATGT+GGG | - | chr8.3:1639832-1639851 | None:intergenic | 25.0% |
| ! | AGATAATGATTTCATTGTTG+TGG | + | chr8.3:1639561-1639580 | MS.gene40743:intron | 25.0% |
| ! | ATATAAAATTATGCCATGCT+TGG | + | chr8.3:1640085-1640104 | MS.gene40743:intron | 25.0% |
| ! | ATTTATGGATCTCTCATATA+TGG | - | chr8.3:1639664-1639683 | None:intergenic | 25.0% |
| ! | GGAAATCTGTAAAATTATGA+AGG | - | chr8.3:1639643-1639662 | None:intergenic | 25.0% |
| ! | TGTTCAAATCTTGAACTTTA+TGG | + | chr8.3:1637735-1637754 | MS.gene40743:intron | 25.0% |
| ! | TTATTACTAAGCCCAAAAAT+CGG | - | chr8.3:1639753-1639772 | None:intergenic | 25.0% |
| ! | TTTATGATCAATTGTGAGTT+TGG | + | chr8.3:1637929-1637948 | MS.gene40743:intron | 25.0% |
| !! | CATGGCATAATTTTATATAG+AGG | - | chr8.3:1640083-1640102 | None:intergenic | 25.0% |
| !! | CTATTAAAATATGAAGTGCT+TGG | - | chr8.3:1639880-1639899 | None:intergenic | 25.0% |
| !! | TTTTGTATTACATGCTATTG+AGG | + | chr8.3:1637981-1638000 | MS.gene40743:intron | 25.0% |
| !!! | ATTTTTTGAAAGAGATCAAG+AGG | - | chr8.3:1640172-1640191 | None:intergenic | 25.0% |
| !!! | CATTGTGTAACATTGATTTA+TGG | - | chr8.3:1639679-1639698 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTTTTACAGACA+CGG | + | chr8.3:1637802-1637821 | MS.gene40743:intron | 25.0% |
| !!! | CTTTTTTTTTTTACAGACAC+GGG | + | chr8.3:1637803-1637822 | MS.gene40743:intron | 25.0% |
| !!! | TTTTTTGAAAGAGATCAAGA+GGG | - | chr8.3:1640171-1640190 | None:intergenic | 25.0% |
| AAAAAGTTTCAGCAGTTGAT+TGG | + | chr8.3:1639207-1639226 | MS.gene40743:CDS | 30.0% | |
| AAATATCCTACATACCTTAC+AGG | - | chr8.3:1637692-1637711 | None:intergenic | 30.0% | |
| AAGCTCTTCAAAAGGAAAAT+AGG | - | chr8.3:1639419-1639438 | None:intergenic | 30.0% | |
| AAGCTTATTCCACTTCAATA+AGG | + | chr8.3:1640020-1640039 | MS.gene40743:intron | 30.0% | |
| ACATAATCTCATTCATAGCT+AGG | - | chr8.3:1639923-1639942 | None:intergenic | 30.0% | |
| ATTATGCCTTGATGAATTCA+TGG | + | chr8.3:1638536-1638555 | MS.gene40743:CDS | 30.0% | |
| CAAGTAGGGAATAGAAAAAA+AGG | - | chr8.3:1638257-1638276 | None:intergenic | 30.0% | |
| CATAAAATCCTGTTGTATAG+AGG | - | chr8.3:1638742-1638761 | None:intergenic | 30.0% | |
| CCGTGTCTGTAAAAAAAAAA+AGG | - | chr8.3:1637805-1637824 | None:intergenic | 30.0% | |
| CTTCATTTCTTCAATGTGTT+TGG | + | chr8.3:1638788-1638807 | MS.gene40743:intron | 30.0% | |
| GAGAAGACAAAGTTTAAATG+TGG | - | chr8.3:1639833-1639852 | None:intergenic | 30.0% | |
| TAATTGACAAACAGAGTATG+AGG | + | chr8.3:1638410-1638429 | MS.gene40743:intron | 30.0% | |
| TACATCAGTATACACATACT+AGG | - | chr8.3:1638984-1639003 | None:intergenic | 30.0% | |
| TAGTATGTGTATACTGATGT+AGG | + | chr8.3:1638983-1639002 | MS.gene40743:intron | 30.0% | |
| TATTACTAAGCCCAAAAATC+GGG | - | chr8.3:1639752-1639771 | None:intergenic | 30.0% | |
| TTATATCTTTATGGAGGAGT+AGG | + | chr8.3:1637877-1637896 | MS.gene40743:intron | 30.0% | |
| TTTAACCTCATAAGAACACA+TGG | - | chr8.3:1638075-1638094 | None:intergenic | 30.0% | |
| TTTCATACTTTAGCACTTGA+TGG | + | chr8.3:1639723-1639742 | MS.gene40743:CDS | 30.0% | |
| ! | CTCTATACAACAGGATTTTA+TGG | + | chr8.3:1638740-1638759 | MS.gene40743:intron | 30.0% |
| ! | CTCTTTTTCTTCCAATTTGA+GGG | - | chr8.3:1638149-1638168 | None:intergenic | 30.0% |
| ! | TGGATGTAAGTCCTTTTAAA+TGG | + | chr8.3:1639802-1639821 | MS.gene40743:intron | 30.0% |
| ! | TTTGTGTTGACAATGAACTA+GGG | + | chr8.3:1640266-1640285 | MS.gene40743:CDS | 30.0% |
| !!! | ATTTTCAAGTCTCAGTGTAA+GGG | + | chr8.3:1638017-1638036 | MS.gene40743:intron | 30.0% |
| AATATCCGAGGCTAAACAAA+GGG | + | chr8.3:1640198-1640217 | MS.gene40743:CDS | 35.0% | |
| AATCAAGCATACAATAGAGC+TGG | - | chr8.3:1638111-1638130 | None:intergenic | 35.0% | |
| AATTCTTCCCTAAGTCAAGT+AGG | - | chr8.3:1638272-1638291 | None:intergenic | 35.0% | |
| ACCTTCAATGTTGCAATGAA+GGG | - | chr8.3:1638898-1638917 | None:intergenic | 35.0% | |
| AGAGGGTAACTAAAATGCAT+AGG | - | chr8.3:1640065-1640084 | None:intergenic | 35.0% | |
| AGATTATTGTGTTCAGCTGA+TGG | + | chr8.3:1640142-1640161 | MS.gene40743:CDS | 35.0% | |
| ATCAGCTGAACACAATAATC+TGG | - | chr8.3:1640143-1640162 | None:intergenic | 35.0% | |
| ATGTGGGCAAACCATTTAAA+AGG | - | chr8.3:1639816-1639835 | None:intergenic | 35.0% | |
| ATTACTACTTCCACTTCTTG+GGG | - | chr8.3:1639249-1639268 | None:intergenic | 35.0% | |
| ATTCTTCCCTAAGTCAAGTA+GGG | - | chr8.3:1638271-1638290 | None:intergenic | 35.0% | |
| ATTTGAACAGACATATCAGC+AGG | - | chr8.3:1637724-1637743 | None:intergenic | 35.0% | |
| CAAGAAGTGGAAGTAGTAAT+GGG | + | chr8.3:1639249-1639268 | MS.gene40743:CDS | 35.0% | |
| CATTACTACTTCCACTTCTT+GGG | - | chr8.3:1639250-1639269 | None:intergenic | 35.0% | |
| CCTCAAATTGGAAGAAAAAG+AGG | + | chr8.3:1638147-1638166 | MS.gene40743:CDS | 35.0% | |
| GAAAAACCTGTAAGGTATGT+AGG | + | chr8.3:1637683-1637702 | MS.gene40743:intron | 35.0% | |
| GAGATCGAGAAAAAATGATG+AGG | + | chr8.3:1640237-1640256 | MS.gene40743:CDS | 35.0% | |
| GCGATTAAGTATCAATGCAT+CGG | - | chr8.3:1638663-1638682 | None:intergenic | 35.0% | |
| GCTCCAGATAATCTATATGA+GGG | + | chr8.3:1638847-1638866 | MS.gene40743:CDS | 35.0% | |
| TACCTTCAATGTTGCAATGA+AGG | - | chr8.3:1638899-1638918 | None:intergenic | 35.0% | |
| TCTATTCCCTACTTGACTTA+GGG | + | chr8.3:1638262-1638281 | MS.gene40743:intron | 35.0% | |
| TGCTCCAGATAATCTATATG+AGG | + | chr8.3:1638846-1638865 | MS.gene40743:CDS | 35.0% | |
| TTATGCCATGTGTTCTTATG+AGG | + | chr8.3:1638067-1638086 | MS.gene40743:intron | 35.0% | |
| TTATGCTAATTGGGACTGTA+GGG | + | chr8.3:1639135-1639154 | MS.gene40743:intron | 35.0% | |
| TTCAGACATCTATTCAGCAA+AGG | + | chr8.3:1638686-1638705 | MS.gene40743:CDS | 35.0% | |
| TTCTATTCCCTACTTGACTT+AGG | + | chr8.3:1638261-1638280 | MS.gene40743:intron | 35.0% | |
| TTGTCACAAAGCTCTTCAAA+AGG | - | chr8.3:1639427-1639446 | None:intergenic | 35.0% | |
| TTTATGCTAATTGGGACTGT+AGG | + | chr8.3:1639134-1639153 | MS.gene40743:intron | 35.0% | |
| TTTCAGAATTGCGATCCAAT+TGG | - | chr8.3:1637667-1637686 | None:intergenic | 35.0% | |
| ! | AGTGTAAGGGGAATATTTTG+AGG | + | chr8.3:1638030-1638049 | MS.gene40743:intron | 35.0% |
| ! | CACTTCAATAAGGCATCATT+GGG | + | chr8.3:1640030-1640049 | MS.gene40743:intron | 35.0% |
| ! | CCTCTTTTTCTTCCAATTTG+AGG | - | chr8.3:1638150-1638169 | None:intergenic | 35.0% |
| ! | CTTTGTGTTGACAATGAACT+AGG | + | chr8.3:1640265-1640284 | MS.gene40743:CDS | 35.0% |
| ! | GCAATTCTGAAAAACCTGTA+AGG | + | chr8.3:1637675-1637694 | MS.gene40743:intron | 35.0% |
| ! | TATTGCTCGTTTTCTTCATC+AGG | + | chr8.3:1639369-1639388 | MS.gene40743:intron | 35.0% |
| ! | TCTGTTTTCACATCATGTTG+AGG | + | chr8.3:1637760-1637779 | MS.gene40743:intron | 35.0% |
| ! | TGCTATTGAGGCAAATTTTG+AGG | + | chr8.3:1637993-1638012 | MS.gene40743:intron | 35.0% |
| !!! | ATTTTTTCTCGATCTCGAAG+AGG | - | chr8.3:1640233-1640252 | None:intergenic | 35.0% |
| !!! | CATTTTCAAGTCTCAGTGTA+AGG | + | chr8.3:1638016-1638035 | MS.gene40743:intron | 35.0% |
| !!! | TTTTCAAGTCTCAGTGTAAG+GGG | + | chr8.3:1638018-1638037 | MS.gene40743:intron | 35.0% |
| !!! | TTTTTTTTTACAGACACGGG+TGG | + | chr8.3:1637806-1637825 | MS.gene40743:intron | 35.0% |
| AAATAATCTGCAGCTCCAAG+AGG | - | chr8.3:1639451-1639470 | None:intergenic | 40.0% | |
| ACCCTTCATTGCAACATTGA+AGG | + | chr8.3:1638894-1638913 | MS.gene40743:CDS | 40.0% | |
| AGATGCATAGCTCATGAGAT+TGG | + | chr8.3:1639008-1639027 | MS.gene40743:CDS | 40.0% | |
| CAATATCCGAGGCTAAACAA+AGG | + | chr8.3:1640197-1640216 | MS.gene40743:CDS | 40.0% | |
| CATGCTTGGTTGTTTGTAAC+AGG | + | chr8.3:1640099-1640118 | MS.gene40743:intron | 40.0% | |
| CCAAGAAGTGGAAGTAGTAA+TGG | + | chr8.3:1639248-1639267 | MS.gene40743:CDS | 40.0% | |
| CCACCCTCATATAGATTATC+TGG | - | chr8.3:1638853-1638872 | None:intergenic | 40.0% | |
| CCAGATAATCTATATGAGGG+TGG | + | chr8.3:1638850-1638869 | MS.gene40743:CDS | 40.0% | |
| CCATTACTACTTCCACTTCT+TGG | - | chr8.3:1639251-1639270 | None:intergenic | 40.0% | |
| CTCATGCAAAATGCAAACGA+GGG | + | chr8.3:1639508-1639527 | MS.gene40743:intron | 40.0% | |
| CTGTTACAAACAACCAAGCA+TGG | - | chr8.3:1640101-1640120 | None:intergenic | 40.0% | |
| GTAATAAAGCAGCTGCACAT+AGG | + | chr8.3:1639766-1639785 | MS.gene40743:CDS | 40.0% | |
| TCTCATGCAAAATGCAAACG+AGG | + | chr8.3:1639507-1639526 | MS.gene40743:intron | 40.0% | |
| TGACTACCGCAAAATGACTT+CGG | + | chr8.3:1639040-1639059 | MS.gene40743:CDS | 40.0% | |
| TGCCAACCAAATAGAATCCT+TGG | - | chr8.3:1639164-1639183 | None:intergenic | 40.0% | |
| TGTCACAGCTTGAGATTTGT+TGG | + | chr8.3:1638614-1638633 | MS.gene40743:intron | 40.0% | |
| TTTCAGCAGTTGATTGGAGA+AGG | + | chr8.3:1639213-1639232 | MS.gene40743:CDS | 40.0% | |
| ! | CCAATGATGCCTTATTGAAG+TGG | - | chr8.3:1640032-1640051 | None:intergenic | 40.0% |
| ! | CCACTTCAATAAGGCATCAT+TGG | + | chr8.3:1640029-1640048 | MS.gene40743:intron | 40.0% |
| ! | CTTGGAGCTGCAGATTATTT+TGG | + | chr8.3:1639451-1639470 | MS.gene40743:CDS | 40.0% |
| ! | TCAATAAGGCATCATTGGGA+CGG | + | chr8.3:1640034-1640053 | MS.gene40743:intron | 40.0% |
| ! | TGCACATAGGTTTGTCACTT+TGG | + | chr8.3:1639779-1639798 | MS.gene40743:CDS | 40.0% |
| !! | ACATAGGTTTGTCACTTTGG+TGG | + | chr8.3:1639782-1639801 | MS.gene40743:CDS | 40.0% |
| !! | GAGATTTGTTGGTCTTCTGT+AGG | + | chr8.3:1638625-1638644 | MS.gene40743:intron | 40.0% |
| !! | GTCATACCGAAGTCATTTTG+CGG | - | chr8.3:1639049-1639068 | None:intergenic | 40.0% |
| !! | TTGATGGCATCCCGATTTTT+GGG | + | chr8.3:1639739-1639758 | MS.gene40743:CDS | 40.0% |
| !!! | GCTTGATTTTTTTCATCCCC+AGG | + | chr8.3:1638123-1638142 | MS.gene40743:intron | 40.0% |
| CACTGGCAAAACTATGCTGA+TGG | + | chr8.3:1637900-1637919 | MS.gene40743:intron | 45.0% | |
| CCTTCGCATTCACCTGTAAA+AGG | + | chr8.3:1637853-1637872 | MS.gene40743:intron | 45.0% | |
| GCGATCCAATTGGCATTCAT+CGG | - | chr8.3:1637657-1637676 | None:intergenic | 45.0% | |
| GGCCAAGGATTCTATTTGGT+TGG | + | chr8.3:1639159-1639178 | MS.gene40743:CDS | 45.0% | |
| TGTCTCAGCCTCTATACAAC+AGG | + | chr8.3:1638731-1638750 | MS.gene40743:intron | 45.0% | |
| TTCACATCATGTTGAGGCTC+TGG | + | chr8.3:1637766-1637785 | MS.gene40743:intron | 45.0% | |
| TTCTTCCAATTTGAGGGCCT+GGG | - | chr8.3:1638143-1638162 | None:intergenic | 45.0% | |
| TTGGTTGGCAGTGATTCATC+TGG | + | chr8.3:1639174-1639193 | MS.gene40743:CDS | 45.0% | |
| TTTCTTCATCAGGTCCCGTT+GGG | + | chr8.3:1639379-1639398 | MS.gene40743:intron | 45.0% | |
| TTTCTTCCAATTTGAGGGCC+TGG | - | chr8.3:1638144-1638163 | None:intergenic | 45.0% | |
| ! | ATCTGGAGCACGATTTGAAG+TGG | - | chr8.3:1638836-1638855 | None:intergenic | 45.0% |
| ! | CCTTTTACAGGTGAATGCGA+AGG | - | chr8.3:1637856-1637875 | None:intergenic | 45.0% |
| ! | GAGCTTTGTGACAAACCTCT+TGG | + | chr8.3:1639433-1639452 | MS.gene40743:CDS | 45.0% |
| ! | GCAAACGAGGGTTTCCATTT+TGG | + | chr8.3:1639520-1639539 | MS.gene40743:intron | 45.0% |
| ! | GTGTCCTTGTAGAAGCACAA+GGG | + | chr8.3:1638459-1638478 | MS.gene40743:intron | 45.0% |
| ! | TGTGTCCTTGTAGAAGCACA+AGG | + | chr8.3:1638458-1638477 | MS.gene40743:intron | 45.0% |
| ! | TTTTCTTCATCAGGTCCCGT+TGG | + | chr8.3:1639378-1639397 | MS.gene40743:intron | 45.0% |
| !! | CTTGATGGCATCCCGATTTT+TGG | + | chr8.3:1639738-1639757 | MS.gene40743:CDS | 45.0% |
| ACTTCCACTTCTTGGGGAGT+AGG | - | chr8.3:1639243-1639262 | None:intergenic | 50.0% | |
| CAACATCCAGTGGATCTGAC+AGG | - | chr8.3:1638485-1638504 | None:intergenic | 50.0% | |
| CACATCCATTAGCTCCCAAC+GGG | - | chr8.3:1639396-1639415 | None:intergenic | 50.0% | |
| CTTTATGGAGGAGTAGGCAC+TGG | + | chr8.3:1637883-1637902 | MS.gene40743:intron | 50.0% | |
| GCACATCCATTAGCTCCCAA+CGG | - | chr8.3:1639397-1639416 | None:intergenic | 50.0% | |
| GCATGCCGATGAATGCCAAT+TGG | + | chr8.3:1637649-1637668 | MS.gene40743:CDS | 50.0% | |
| GGGTGGCCAAGGATTCTATT+TGG | + | chr8.3:1639155-1639174 | MS.gene40743:intron | 50.0% | |
| GTCAGATCCACTGGATGTTG+TGG | + | chr8.3:1638485-1638504 | MS.gene40743:CDS | 50.0% | |
| TCTTCCAATTTGAGGGCCTG+GGG | - | chr8.3:1638142-1638161 | None:intergenic | 50.0% | |
| TGCTAATTGGGACTGTAGGG+TGG | + | chr8.3:1639138-1639157 | MS.gene40743:intron | 50.0% | |
| TTTACAGACACGGGTGGCTT+TGG | + | chr8.3:1637812-1637831 | MS.gene40743:intron | 50.0% | |
| !! | ATATGAGGGTGGACTGCAGA+GGG | + | chr8.3:1638861-1638880 | MS.gene40743:CDS | 50.0% |
| !! | TATATGAGGGTGGACTGCAG+AGG | + | chr8.3:1638860-1638879 | MS.gene40743:CDS | 50.0% |
| CACACCTACTCCCCAAGAAG+TGG | + | chr8.3:1639236-1639255 | MS.gene40743:CDS | 55.0% | |
| CAGGCCCTTGTGCTTCTACA+AGG | - | chr8.3:1638466-1638485 | None:intergenic | 55.0% | |
| CTCGATCTCGAAGAGGTCCT+GGG | - | chr8.3:1640226-1640245 | None:intergenic | 55.0% | |
| GATCCACTGGATGTTGTGGC+AGG | + | chr8.3:1638489-1638508 | MS.gene40743:CDS | 55.0% | |
| TCATCCCCAGGCCCTCAAAT+TGG | + | chr8.3:1638135-1638154 | MS.gene40743:intron | 55.0% | |
| TCTCCTGCCACAACATCCAG+TGG | - | chr8.3:1638495-1638514 | None:intergenic | 55.0% | |
| TCTCGATCTCGAAGAGGTCC+TGG | - | chr8.3:1640227-1640246 | None:intergenic | 55.0% | |
| ! | GGGTGCCCTTTGTTTAGCCT+CGG | - | chr8.3:1640206-1640225 | None:intergenic | 55.0% |
| !! | AGGCTAAACAAAGGGCACCC+AGG | + | chr8.3:1640206-1640225 | MS.gene40743:CDS | 55.0% |
| CAAGGGCCTGTCAGATCCAC+TGG | + | chr8.3:1638476-1638495 | MS.gene40743:CDS | 60.0% | |
| CAGGTCCCGTTGGGAGCTAA+TGG | + | chr8.3:1639388-1639407 | MS.gene40743:intron | 60.0% | |
| TTGGGACTGTAGGGTGGCCA+AGG | + | chr8.3:1639144-1639163 | MS.gene40743:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 1637633 | 1640314 | 1637633 | ID=MS.gene40743 |
| chr8.3 | mRNA | 1637633 | 1640314 | 1637633 | ID=MS.gene40743.t1;Parent=MS.gene40743 |
| chr8.3 | exon | 1637633 | 1637691 | 1637633 | ID=MS.gene40743.t1.exon1;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1637633 | 1637691 | 1637633 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1638145 | 1638214 | 1638145 | ID=MS.gene40743.t1.exon2;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1638145 | 1638214 | 1638145 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1638471 | 1638557 | 1638471 | ID=MS.gene40743.t1.exon3;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1638471 | 1638557 | 1638471 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1638647 | 1638712 | 1638647 | ID=MS.gene40743.t1.exon4;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1638647 | 1638712 | 1638647 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1638823 | 1638915 | 1638823 | ID=MS.gene40743.t1.exon5;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1638823 | 1638915 | 1638823 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1639005 | 1639061 | 1639005 | ID=MS.gene40743.t1.exon6;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1639005 | 1639061 | 1639005 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1639156 | 1639284 | 1639156 | ID=MS.gene40743.t1.exon7;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1639156 | 1639284 | 1639156 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1639391 | 1639481 | 1639391 | ID=MS.gene40743.t1.exon8;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1639391 | 1639481 | 1639391 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1639718 | 1639806 | 1639718 | ID=MS.gene40743.t1.exon9;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1639718 | 1639806 | 1639718 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| chr8.3 | exon | 1640121 | 1640314 | 1640121 | ID=MS.gene40743.t1.exon10;Parent=MS.gene40743.t1 |
| chr8.3 | CDS | 1640121 | 1640314 | 1640121 | ID=cds.MS.gene40743.t1;Parent=MS.gene40743.t1 |
| Gene Sequence |
| Protein sequence |
