Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30930.t1 | AES67570.2 | 94.1 | 913 | 46 | 3 | 1 | 908 | 62 | 971 | 0.00E+00 | 1639.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30930.t1 | F4JI44 | 42.9 | 899 | 434 | 23 | 51 | 902 | 45 | 911 | 3.9e-165 | 583.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30930.t1 | G7IHK7 | 94.1 | 913 | 46 | 3 | 1 | 908 | 62 | 971 | 0.0e+00 | 1639.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049404 | MS.gene30930 | 0.835831 | 1.33E-56 | -1.69E-46 |
MS.gene049435 | MS.gene30930 | 0.829062 | 6.35E-55 | -1.69E-46 |
MS.gene049501 | MS.gene30930 | 0.806482 | 8.05E-50 | -1.69E-46 |
MS.gene050020 | MS.gene30930 | 0.814415 | 1.56E-51 | -1.69E-46 |
MS.gene051198 | MS.gene30930 | 0.802175 | 6.35E-49 | -1.69E-46 |
MS.gene051744 | MS.gene30930 | 0.803331 | 3.67E-49 | -1.69E-46 |
MS.gene052020 | MS.gene30930 | 0.847922 | 8.51E-60 | -1.69E-46 |
MS.gene052190 | MS.gene30930 | 0.803858 | 2.85E-49 | -1.69E-46 |
MS.gene052323 | MS.gene30930 | 0.810479 | 1.13E-50 | -1.69E-46 |
MS.gene052611 | MS.gene30930 | 0.835573 | 1.55E-56 | -1.69E-46 |
MS.gene052612 | MS.gene30930 | 0.84838 | 6.36E-60 | -1.69E-46 |
MS.gene052616 | MS.gene30930 | 0.8033 | 3.72E-49 | -1.69E-46 |
MS.gene052665 | MS.gene30930 | 0.800112 | 1.68E-48 | -1.69E-46 |
MS.gene053201 | MS.gene30930 | 0.802345 | 5.86E-49 | -1.69E-46 |
MS.gene054467 | MS.gene30930 | 0.802929 | 4.44E-49 | -1.69E-46 |
MS.gene05447 | MS.gene30930 | 0.817501 | 3.19E-52 | -1.69E-46 |
MS.gene055356 | MS.gene30930 | 0.806311 | 8.75E-50 | -1.69E-46 |
MS.gene055357 | MS.gene30930 | 0.850169 | 2.02E-60 | -1.69E-46 |
MS.gene056173 | MS.gene30930 | 0.848792 | 4.89E-60 | -1.69E-46 |
MS.gene056366 | MS.gene30930 | 0.803953 | 2.73E-49 | -1.69E-46 |
MS.gene056542 | MS.gene30930 | 0.82145 | 4.01E-53 | -1.69E-46 |
MS.gene056543 | MS.gene30930 | 0.80929 | 2.04E-50 | -1.69E-46 |
MS.gene056545 | MS.gene30930 | 0.816012 | 6.89E-52 | -1.69E-46 |
MS.gene056553 | MS.gene30930 | 0.833005 | 6.84E-56 | -1.69E-46 |
MS.gene056952 | MS.gene30930 | 0.82058 | 6.36E-53 | -1.69E-46 |
MS.gene057060 | MS.gene30930 | 0.808399 | 3.16E-50 | -1.69E-46 |
MS.gene057314 | MS.gene30930 | 0.805278 | 1.44E-49 | -1.69E-46 |
MS.gene057444 | MS.gene30930 | 0.801622 | 8.26E-49 | -1.69E-46 |
MS.gene057869 | MS.gene30930 | 0.838022 | 3.68E-57 | -1.69E-46 |
MS.gene058625 | MS.gene30930 | 0.805513 | 1.29E-49 | -1.69E-46 |
MS.gene058829 | MS.gene30930 | 0.820142 | 8.02E-53 | -1.69E-46 |
MS.gene058979 | MS.gene30930 | 0.800101 | 1.69E-48 | -1.69E-46 |
MS.gene059128 | MS.gene30930 | 0.813098 | 3.04E-51 | -1.69E-46 |
MS.gene059607 | MS.gene30930 | 0.802136 | 6.47E-49 | -1.69E-46 |
MS.gene059937 | MS.gene30930 | 0.800708 | 1.27E-48 | -1.69E-46 |
MS.gene060568 | MS.gene30930 | 0.824593 | 7.42E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30930.t1 | MTR_2g096290 | 94.085 | 913 | 46 | 3 | 1 | 908 | 62 | 971 | 0.0 | 1749 |
MS.gene30930.t1 | MTR_2g096290 | 93.229 | 768 | 44 | 3 | 1 | 763 | 1 | 765 | 0.0 | 1451 |
MS.gene30930.t1 | MTR_4g063030 | 55.739 | 967 | 326 | 10 | 1 | 907 | 1 | 925 | 0.0 | 1019 |
MS.gene30930.t1 | MTR_4g061370 | 63.492 | 126 | 15 | 1 | 89 | 214 | 830 | 924 | 1.17e-35 | 147 |
MS.gene30930.t1 | MTR_4g061370 | 81.034 | 58 | 11 | 0 | 428 | 485 | 917 | 974 | 1.04e-22 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30930.t1 | AT4G03090 | 42.636 | 903 | 406 | 22 | 51 | 902 | 54 | 895 | 0.0 | 618 |
MS.gene30930.t1 | AT4G03090 | 43.189 | 903 | 426 | 24 | 51 | 902 | 45 | 911 | 0.0 | 618 |
MS.gene30930.t1 | AT4G03090 | 42.636 | 903 | 406 | 22 | 51 | 902 | 45 | 886 | 0.0 | 618 |
MS.gene30930.t1 | AT4G03090 | 42.636 | 903 | 406 | 22 | 51 | 902 | 45 | 886 | 0.0 | 618 |
MS.gene30930.t1 | AT4G03090 | 42.706 | 754 | 351 | 16 | 51 | 786 | 45 | 735 | 2.55e-171 | 516 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTGTTCTTTACCGGTTAA+AGG | 0.208971 | 2.2:+5660107 | None:intergenic |
GTCTAAATCTGTTGCATTAG+AGG | 0.217184 | 2.2:-5662616 | MS.gene30930:intron |
TGCAATTTATATCTGTTAAC+AGG | 0.220547 | 2.2:-5665079 | MS.gene30930:CDS |
TCCTCCACATTTAAGAAGTT+TGG | 0.238064 | 2.2:+5661248 | None:intergenic |
GAATTACAGCAGCTATTTCT+AGG | 0.247178 | 2.2:-5662842 | MS.gene30930:CDS |
GGAGCAACTTCTTAGGAATA+AGG | 0.247722 | 2.2:-5663552 | MS.gene30930:intron |
GCCTTTGCAGCATTGCTTGA+TGG | 0.253709 | 2.2:+5666365 | None:intergenic |
ATATTCATGGATGCAGCTTT+TGG | 0.261565 | 2.2:-5663743 | MS.gene30930:CDS |
CTATTTACATCAAATGGATT+TGG | 0.266168 | 2.2:-5660470 | MS.gene30930:CDS |
TGTGAAGGATGCCACAAATT+TGG | 0.284599 | 2.2:-5661740 | MS.gene30930:CDS |
GATTCTCTCTTGTCCCCTAT+TGG | 0.286508 | 2.2:-5666308 | MS.gene30930:CDS |
GTAGAAAATAAAGGCTTATC+TGG | 0.303534 | 2.2:-5659957 | MS.gene30930:CDS |
TGTTTAAGGAGCAACTTCTT+AGG | 0.312159 | 2.2:-5663559 | MS.gene30930:CDS |
GCTGCATTCCGCTGCATATC+AGG | 0.315685 | 2.2:+5659663 | None:intergenic |
TTCATGCTAACTGTTCTTGC+TGG | 0.316791 | 2.2:-5665240 | MS.gene30930:CDS |
GCAGATGCTCAAACAAAGTT+TGG | 0.317363 | 2.2:-5658711 | MS.gene30930:CDS |
AAGATCAGCTTGTTCTTTAC+CGG | 0.320561 | 2.2:+5660100 | None:intergenic |
GTATTACGTTGTTCCAAGTT+TGG | 0.320577 | 2.2:+5660029 | None:intergenic |
CAATCACTATTTACATCAAA+TGG | 0.335640 | 2.2:-5660476 | MS.gene30930:CDS |
TGTGAGCTCAGGGTTGATAA+AGG | 0.340502 | 2.2:-5658777 | MS.gene30930:CDS |
TATTTACATCAAATGGATTT+GGG | 0.345795 | 2.2:-5660469 | MS.gene30930:CDS |
GTAATTCTATTCGATGTATA+TGG | 0.348500 | 2.2:+5662858 | None:intergenic |
GAACATGGCCTCGTCTCTAT+TGG | 0.353213 | 2.2:+5665959 | None:intergenic |
CAACATCAACGAGGGTTATC+AGG | 0.353493 | 2.2:-5660261 | MS.gene30930:intron |
TTGCTAGCAATGGAAACTTT+AGG | 0.358896 | 2.2:+5661398 | None:intergenic |
GACTTGTTGAAGAAAGCTTT+TGG | 0.371189 | 2.2:-5662238 | MS.gene30930:CDS |
CAGACGCAGGATAAGTGGTT+TGG | 0.372628 | 2.2:-5658840 | MS.gene30930:CDS |
TTGGTATCATGAGAATAGTA+TGG | 0.379852 | 2.2:-5658692 | MS.gene30930:CDS |
TAAGCATGCTACTCGGGGTT+AGG | 0.380522 | 2.2:+5661710 | None:intergenic |
TTGTGGATGTTTGTGAGCTC+AGG | 0.389391 | 2.2:-5658788 | MS.gene30930:CDS |
GTTGACATGGAAAAGCTTGC+AGG | 0.390495 | 2.2:-5666020 | MS.gene30930:CDS |
TGAGAAGGGTAATGACCAAT+AGG | 0.390583 | 2.2:+5666293 | None:intergenic |
GATCAGTTCGTGTGGCTGTT+AGG | 0.391856 | 2.2:-5663721 | MS.gene30930:CDS |
ACTTATTTATTTGCTTGAAC+AGG | 0.393906 | 2.2:-5666246 | MS.gene30930:intron |
AAGCTTCTTTACAGCTTCTT+CGG | 0.396342 | 2.2:-5663601 | MS.gene30930:CDS |
AGGCAGAGAGGGCCAACAAT+TGG | 0.399431 | 2.2:-5659064 | MS.gene30930:CDS |
ATGACAGGTTGACATATTCA+TGG | 0.400530 | 2.2:-5663756 | MS.gene30930:intron |
TCTACCTGACTTTGCCGACT+TGG | 0.404498 | 2.2:+5659975 | None:intergenic |
ATGCAGCTTTACTTCAATCA+TGG | 0.416081 | 2.2:-5659647 | MS.gene30930:CDS |
CAAAGTCAGGTAGAAAATAA+AGG | 0.417480 | 2.2:-5659966 | MS.gene30930:CDS |
TTACAGGAACTATGCGGAAA+GGG | 0.417723 | 2.2:-5662927 | MS.gene30930:intron |
CTTTACCGGTTAAAGGTAAC+GGG | 0.418778 | 2.2:+5660114 | None:intergenic |
TTTAATCTCCAGAGCAAGAA+AGG | 0.420874 | 2.2:-5661505 | MS.gene30930:intron |
GGTCAATATGTTGTGCTTGT+TGG | 0.424655 | 2.2:-5658900 | MS.gene30930:CDS |
GTGTGCAAGGAGAGGAGATT+GGG | 0.431924 | 2.2:-5658878 | MS.gene30930:CDS |
AGACGCAGGATAAGTGGTTT+GGG | 0.434307 | 2.2:-5658839 | MS.gene30930:CDS |
CGATGACCTTGCGGACGAAA+AGG | 0.439374 | 2.2:+5661480 | None:intergenic |
TGCTGTCAGATTTGATTCCA+TGG | 0.444581 | 2.2:+5663658 | None:intergenic |
GACTATAATGAATGCAGAAC+AGG | 0.445578 | 2.2:-5659718 | MS.gene30930:CDS |
ATCTAAACTCCTTGCTGTGC+TGG | 0.446454 | 2.2:+5662641 | None:intergenic |
GGACACCCGTTACCTTTAAC+CGG | 0.446995 | 2.2:-5660119 | MS.gene30930:CDS |
GATCTATCTAACTTACTGCC+TGG | 0.449004 | 2.2:-5661443 | MS.gene30930:CDS |
GTGAGCTCAGGGTTGATAAA+GGG | 0.450068 | 2.2:-5658776 | MS.gene30930:CDS |
TCGAAATTCTAAGTTTGAGC+AGG | 0.452875 | 2.2:-5665883 | MS.gene30930:intron |
TTATCTGGTAAAACAGCATC+AGG | 0.456723 | 2.2:-5659942 | MS.gene30930:CDS |
GAGAAGGGTAATGACCAATA+GGG | 0.458063 | 2.2:+5666294 | None:intergenic |
AAGCTTTAAGCATGCTACTC+GGG | 0.459836 | 2.2:+5661704 | None:intergenic |
GGCAGAGAGGGCCAACAATT+GGG | 0.460377 | 2.2:-5659063 | MS.gene30930:CDS |
TGGTCCAAGTCGGCAAAGTC+AGG | 0.463086 | 2.2:-5659979 | MS.gene30930:CDS |
ACAAGCTGATCTTAATAAGA+AGG | 0.472088 | 2.2:-5660090 | MS.gene30930:CDS |
GGTCATCGAGTGCTTGCAAA+TGG | 0.472556 | 2.2:-5661465 | MS.gene30930:CDS |
CTACAAGAGTTGAATACAAA+AGG | 0.472851 | 2.2:+5665104 | None:intergenic |
GAGCCATGGGACCCAATTGT+TGG | 0.478783 | 2.2:+5659052 | None:intergenic |
GAACCTACCTTCACAAACAT+TGG | 0.480607 | 2.2:+5661618 | None:intergenic |
TAGGTTGAATTCCAAATTTG+TGG | 0.486191 | 2.2:+5661729 | None:intergenic |
GTAAAGAAGCTTCACACTGC+TGG | 0.487048 | 2.2:+5663612 | None:intergenic |
TTGGTCATTACCCTTCTCAA+TGG | 0.487973 | 2.2:-5666289 | MS.gene30930:CDS |
ATCTATCTAACTTACTGCCT+GGG | 0.489912 | 2.2:-5661442 | MS.gene30930:CDS |
TTCACCACTTAAATATAACT+TGG | 0.491225 | 2.2:-5666337 | MS.gene30930:CDS |
GGATCCAAGTTATATTTAAG+TGG | 0.497862 | 2.2:+5666333 | None:intergenic |
GAGGTTTGATGAGCACCAAC+AGG | 0.498672 | 2.2:+5661843 | None:intergenic |
AACCTACCTTCACAAACATT+GGG | 0.498815 | 2.2:+5661619 | None:intergenic |
AGAACTGACGCAAGGTGCAT+TGG | 0.499782 | 2.2:+5665990 | None:intergenic |
CAAATGTGAGGAGTCGTCTT+GGG | 0.501574 | 2.2:-5660300 | MS.gene30930:CDS |
TCAGATGCCAGTTCTGCAAA+AGG | 0.502921 | 2.2:-5659870 | MS.gene30930:CDS |
TTGTCGACATCAGCTGCTAC+TGG | 0.503377 | 2.2:+5659100 | None:intergenic |
TAAGTGGTTTGGGAAGAACT+TGG | 0.505851 | 2.2:-5658829 | MS.gene30930:CDS |
GTACAGCAGCTAAGGATGTT+CGG | 0.508640 | 2.2:-5659123 | MS.gene30930:CDS |
GCAAATGTGAGGAGTCGTCT+TGG | 0.513506 | 2.2:-5660301 | MS.gene30930:CDS |
TGTTTCAGACGCAGGATAAG+TGG | 0.516162 | 2.2:-5658845 | MS.gene30930:CDS |
CAGAAGTCACCCAATGGGAT+TGG | 0.516365 | 2.2:-5662188 | MS.gene30930:CDS |
TCTTTACCGGTTAAAGGTAA+CGG | 0.520153 | 2.2:+5660113 | None:intergenic |
AGATCGAAAATTTGAATCAT+CGG | 0.523350 | 2.2:+5662129 | None:intergenic |
TGTGGATGTTTGTGAGCTCA+GGG | 0.526357 | 2.2:-5658787 | MS.gene30930:CDS |
CATGGCTCACGTGTCAGTGC+AGG | 0.529073 | 2.2:-5659037 | MS.gene30930:intron |
GGTGTGCAAGGAGAGGAGAT+TGG | 0.534010 | 2.2:-5658879 | MS.gene30930:CDS |
CTGTCAGCAGTGAGATGCCC+GGG | 0.534488 | 2.2:+5662208 | None:intergenic |
GCTAGCTCGTACAGCAGCTA+AGG | 0.535622 | 2.2:-5659131 | MS.gene30930:CDS |
GTGGTTTGGGAAGAACTTGG+AGG | 0.539187 | 2.2:-5658826 | MS.gene30930:CDS |
AAGTCTCAGACAGGCAGAGA+GGG | 0.540452 | 2.2:-5659075 | MS.gene30930:CDS |
AACGAGCGTCTTAAAAGAGT+TGG | 0.541199 | 2.2:-5659801 | MS.gene30930:CDS |
ACCATCAAGCAATGCTGCAA+AGG | 0.541213 | 2.2:-5666366 | MS.gene30930:CDS |
TCTGTCAGCAGTGAGATGCC+CGG | 0.541481 | 2.2:+5662207 | None:intergenic |
GAAGCTTTAAGCATGCTACT+CGG | 0.542605 | 2.2:+5661703 | None:intergenic |
GAATTCTGCAAATCCAAACT+TGG | 0.544557 | 2.2:-5660042 | MS.gene30930:CDS |
TGGTATCATGAGAATAGTAT+GGG | 0.545629 | 2.2:-5658691 | MS.gene30930:CDS |
TGAACAAAGTATTAGTGTTG+CGG | 0.546428 | 2.2:-5658665 | MS.gene30930:CDS |
GTTGTTGTTCATGTGGATAA+CGG | 0.546629 | 2.2:-5659840 | MS.gene30930:CDS |
ACAGCTGAAGACACAATTCA+AGG | 0.547283 | 2.2:-5660005 | MS.gene30930:CDS |
TGCACTGACACGTGAGCCAT+GGG | 0.548146 | 2.2:+5659039 | None:intergenic |
ATATATCTGCTGCAGTTGGA+TGG | 0.548166 | 2.2:-5661786 | MS.gene30930:CDS |
GATTCCAAACTTCTTAAATG+TGG | 0.548185 | 2.2:-5661252 | MS.gene30930:CDS |
CACACTTCATCCATTGAGAA+GGG | 0.548376 | 2.2:+5666279 | None:intergenic |
CTGCACTGACACGTGAGCCA+TGG | 0.548926 | 2.2:+5659038 | None:intergenic |
TGCAGCTTTACTTCAATCAT+GGG | 0.548989 | 2.2:-5659646 | MS.gene30930:CDS |
TCACACTTCATCCATTGAGA+AGG | 0.550129 | 2.2:+5666278 | None:intergenic |
TCCAAACTTCTTAAATGTGG+AGG | 0.550555 | 2.2:-5661249 | MS.gene30930:CDS |
GTTGTGCTTGTTGGTGTGCA+AGG | 0.551205 | 2.2:-5658891 | MS.gene30930:CDS |
GGTGCTCATGACTAAAAGCT+TGG | 0.551479 | 2.2:+5665125 | None:intergenic |
GGTTGAACAATCGAAAAGCT+AGG | 0.557080 | 2.2:-5659153 | MS.gene30930:CDS |
ACGGAGGTTCTTGCTAGCAA+TGG | 0.559169 | 2.2:+5661388 | None:intergenic |
GGGCCAACAATTGGGTCCCA+TGG | 0.561357 | 2.2:-5659055 | MS.gene30930:CDS |
TGAGCTGTACCAATCCCATT+GGG | 0.561694 | 2.2:+5662179 | None:intergenic |
TTGAATTGTGTCTTCAGCTG+TGG | 0.564285 | 2.2:+5660007 | None:intergenic |
CAAGCTGATCTTAATAAGAA+GGG | 0.568843 | 2.2:-5660089 | MS.gene30930:CDS |
GCCAATGGCTTCTGACGAGT+AGG | 0.568888 | 2.2:+5658743 | None:intergenic |
TGTTCTTGCTGGTTACAGAC+AGG | 0.569943 | 2.2:-5665229 | MS.gene30930:intron |
TTGAATGTGTAACTTCAAGA+TGG | 0.571720 | 2.2:+5662881 | None:intergenic |
TTGAGCTGTACCAATCCCAT+TGG | 0.571816 | 2.2:+5662178 | None:intergenic |
GCTATAATTTCACTCTCCCA+TGG | 0.572536 | 2.2:-5661877 | MS.gene30930:CDS |
GGTGACGCAGATGATTGAAA+TGG | 0.573198 | 2.2:-5665268 | MS.gene30930:CDS |
AGAGGAGATTGGGAAAGGAA+CGG | 0.574433 | 2.2:-5658868 | MS.gene30930:CDS |
GCTGACAGAAGTCACCCAAT+GGG | 0.574768 | 2.2:-5662193 | MS.gene30930:CDS |
TCGACAATCAAGTCTCAGAC+AGG | 0.576747 | 2.2:-5659084 | MS.gene30930:CDS |
CCCTACTCGTCAGAAGCCAT+TGG | 0.577203 | 2.2:-5658744 | MS.gene30930:CDS |
CAGGGTTTATTTCAACACAA+TGG | 0.579467 | 2.2:-5665060 | MS.gene30930:CDS |
TAGGGGACAAGAGAGAATCA+TGG | 0.580666 | 2.2:+5666312 | None:intergenic |
ATCTGCAAATGTTGTGCCAA+TGG | 0.582162 | 2.2:+5658728 | None:intergenic |
AAGCTTCTTACGCACACCAT+AGG | 0.584788 | 2.2:-5661687 | MS.gene30930:CDS |
AAAGAATGTTGTTGTTCATG+TGG | 0.585615 | 2.2:-5659847 | MS.gene30930:CDS |
CGTGGTTGTACAGGTTGACA+TGG | 0.585989 | 2.2:-5666033 | MS.gene30930:intron |
CCAATGGCTTCTGACGAGTA+GGG | 0.586626 | 2.2:+5658744 | None:intergenic |
TGACAAATAATGATGTCCTA+TGG | 0.586755 | 2.2:+5661671 | None:intergenic |
ACCACTCTGCCAGAAAACTC+AGG | 0.587240 | 2.2:-5660327 | MS.gene30930:intron |
TATGATATATCTGCTGCAGT+TGG | 0.588389 | 2.2:-5661790 | MS.gene30930:CDS |
CAAGGAGAGGAGATTGGGAA+AGG | 0.589372 | 2.2:-5658873 | MS.gene30930:CDS |
TATATCTGCTGCAGTTGGAT+GGG | 0.590351 | 2.2:-5661785 | MS.gene30930:CDS |
TACAGGAACTATGCGGAAAG+GGG | 0.591420 | 2.2:-5662926 | MS.gene30930:intron |
TGCTGACAGAAGTCACCCAA+TGG | 0.593221 | 2.2:-5662194 | MS.gene30930:CDS |
ACAGGAACTATGCGGAAAGG+GGG | 0.593620 | 2.2:-5662925 | MS.gene30930:intron |
AGCTTTAAGCATGCTACTCG+GGG | 0.597036 | 2.2:+5661705 | None:intergenic |
AAGAAGGGTGGTCAAGTCGA+AGG | 0.599091 | 2.2:-5660074 | MS.gene30930:CDS |
AGCTGCGAAGACGTAACCTC+AGG | 0.606779 | 2.2:+5659523 | None:intergenic |
TTTGTTCCCAATGTTTGTGA+AGG | 0.607067 | 2.2:-5661625 | MS.gene30930:intron |
CTCTGCCAGAAAACTCAGGA+TGG | 0.608284 | 2.2:-5660323 | MS.gene30930:intron |
CTTACAGGAACTATGCGGAA+AGG | 0.609032 | 2.2:-5662928 | MS.gene30930:intron |
GGAATCAGCAACCTGTGTTG+TGG | 0.611809 | 2.2:-5658805 | MS.gene30930:CDS |
ATGTTCAAATACGTGTTATG+TGG | 0.619472 | 2.2:-5665942 | MS.gene30930:CDS |
GAAGACACAATTCAAGGCAA+TGG | 0.622872 | 2.2:-5659999 | MS.gene30930:CDS |
GCAATTTATATCTGTTAACA+GGG | 0.623045 | 2.2:-5665078 | MS.gene30930:CDS |
GGTGTTGCTTGCTCACCCCA+AGG | 0.624043 | 2.2:-5665023 | MS.gene30930:intron |
TTATAATGAAGATATTTCCA+TGG | 0.627888 | 2.2:-5663675 | MS.gene30930:CDS |
CGTCCTCCTCTGTCTCTGAG+AGG | 0.628499 | 2.2:+5661824 | None:intergenic |
TAATACTTCACTGGATGTGA+AGG | 0.628752 | 2.2:-5661755 | MS.gene30930:CDS |
TTCAAGGCAATGGTCCAAGT+CGG | 0.629987 | 2.2:-5659989 | MS.gene30930:CDS |
AGAAGGGTAATGACCAATAG+GGG | 0.630285 | 2.2:+5666295 | None:intergenic |
ATGAAGTAGCCAGCACAGCA+AGG | 0.630372 | 2.2:-5662650 | MS.gene30930:CDS |
AACTCAGGATGGCAAATGTG+AGG | 0.630909 | 2.2:-5660312 | MS.gene30930:CDS |
ATCAAACCTCTCAGAGACAG+AGG | 0.631888 | 2.2:-5661830 | MS.gene30930:CDS |
GCAAGCACTCGATGACCTTG+CGG | 0.634512 | 2.2:+5661471 | None:intergenic |
AGGAACGGTGTTTCAGACGC+AGG | 0.635887 | 2.2:-5658853 | MS.gene30930:CDS |
TCTAAACTCAACATCAACGA+GGG | 0.637905 | 2.2:-5660269 | MS.gene30930:CDS |
CAAGTCTCAGACAGGCAGAG+AGG | 0.639822 | 2.2:-5659076 | MS.gene30930:CDS |
CTCAAACTTAGAATTTCGAG+AGG | 0.643809 | 2.2:+5665887 | None:intergenic |
ACATAACACGTATTTGAACA+TGG | 0.645190 | 2.2:+5665944 | None:intergenic |
CTCACAAACATCCACAACAC+AGG | 0.646113 | 2.2:+5658794 | None:intergenic |
CAGGAACTATGCGGAAAGGG+GGG | 0.646619 | 2.2:-5662924 | MS.gene30930:CDS |
ACAGGTGACAATGATAGAGA+AGG | 0.648411 | 2.2:-5659700 | MS.gene30930:CDS |
GCTTGTTGGTGTGCAAGGAG+AGG | 0.661650 | 2.2:-5658886 | MS.gene30930:CDS |
GCTGATCTTAATAAGAAGGG+TGG | 0.661742 | 2.2:-5660086 | MS.gene30930:CDS |
CAAAGTATTAGTGTTGCGGA+CGG | 0.672111 | 2.2:-5658661 | MS.gene30930:CDS |
TCGAGAGGATAAATCACACA+AGG | 0.682203 | 2.2:+5665902 | None:intergenic |
ACAATGGAGAGATATTGCAC+AGG | 0.686223 | 2.2:-5665044 | MS.gene30930:CDS |
TAGATGAACCTGATATGCAG+CGG | 0.688783 | 2.2:-5659671 | MS.gene30930:CDS |
TCTGGTAAAACAGCATCAGG+AGG | 0.694098 | 2.2:-5659939 | MS.gene30930:CDS |
TCAGTATCAAAAGAAAACCC+AGG | 0.703438 | 2.2:+5661425 | None:intergenic |
ACGATATCAGAACTGACGCA+AGG | 0.703514 | 2.2:+5665982 | None:intergenic |
TTTCTCTTACAGGAACTATG+CGG | 0.707151 | 2.2:-5662933 | MS.gene30930:intron |
TTCTAAACTCAACATCAACG+AGG | 0.714896 | 2.2:-5660270 | MS.gene30930:CDS |
AAACCTCTCAGAGACAGAGG+AGG | 0.723855 | 2.2:-5661827 | MS.gene30930:CDS |
GATATCGTCCAATAGAGACG+AGG | 0.731954 | 2.2:-5665967 | MS.gene30930:CDS |
AAAAGATTGAGCTCGCACAG+AGG | 0.741409 | 2.2:-5659755 | MS.gene30930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 5658656 | 5666408 | 5658656 | ID=MS.gene30930 |
chr2.2 | mRNA | 5658656 | 5666408 | 5658656 | ID=MS.gene30930.t1;Parent=MS.gene30930 |
chr2.2 | exon | 5666247 | 5666408 | 5666247 | ID=MS.gene30930.t1.exon1;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5666247 | 5666408 | 5666247 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5665884 | 5666042 | 5665884 | ID=MS.gene30930.t1.exon2;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5665884 | 5666042 | 5665884 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5665230 | 5665313 | 5665230 | ID=MS.gene30930.t1.exon3;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5665230 | 5665313 | 5665230 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5665024 | 5665152 | 5665024 | ID=MS.gene30930.t1.exon4;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5665024 | 5665152 | 5665024 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5663553 | 5663771 | 5663553 | ID=MS.gene30930.t1.exon5;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5663553 | 5663771 | 5663553 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5662818 | 5662943 | 5662818 | ID=MS.gene30930.t1.exon6;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5662818 | 5662943 | 5662818 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5662617 | 5662712 | 5662617 | ID=MS.gene30930.t1.exon7;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5662617 | 5662712 | 5662617 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5662111 | 5662266 | 5662111 | ID=MS.gene30930.t1.exon8;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5662111 | 5662266 | 5662111 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5661626 | 5661914 | 5661626 | ID=MS.gene30930.t1.exon9;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5661626 | 5661914 | 5661626 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5661390 | 5661515 | 5661390 | ID=MS.gene30930.t1.exon10;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5661390 | 5661515 | 5661390 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5661233 | 5661302 | 5661233 | ID=MS.gene30930.t1.exon11;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5661233 | 5661302 | 5661233 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5660454 | 5660517 | 5660454 | ID=MS.gene30930.t1.exon12;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5660454 | 5660517 | 5660454 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5660262 | 5660336 | 5660262 | ID=MS.gene30930.t1.exon13;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5660262 | 5660336 | 5660262 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5659626 | 5660159 | 5659626 | ID=MS.gene30930.t1.exon14;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5659626 | 5660159 | 5659626 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5659514 | 5659548 | 5659514 | ID=MS.gene30930.t1.exon15;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5659514 | 5659548 | 5659514 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5659038 | 5659174 | 5659038 | ID=MS.gene30930.t1.exon16;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5659038 | 5659174 | 5659038 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
chr2.2 | exon | 5658656 | 5658921 | 5658656 | ID=MS.gene30930.t1.exon17;Parent=MS.gene30930.t1 |
chr2.2 | CDS | 5658656 | 5658921 | 5658656 | ID=cds.MS.gene30930.t1;Parent=MS.gene30930.t1 |
Gene Sequence |
Protein sequence |