Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061229.t1 | AFK39086.1 | 97.8 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 4.60E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061229.t1 | Q9SYH2 | 64.4 | 180 | 58 | 2 | 5 | 178 | 4 | 183 | 3.0e-53 | 209.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061229.t1 | I3SFP4 | 97.8 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 3.3e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061229 | MS.gene26816 | 0.836734 | 7.87E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65289 | MS.gene061229 | PPI |
| MS.gene68059 | MS.gene061229 | PPI |
| MS.gene56011 | MS.gene061229 | PPI |
| MS.gene010619 | MS.gene061229 | PPI |
| MS.gene74085 | MS.gene061229 | PPI |
| MS.gene063067 | MS.gene061229 | PPI |
| MS.gene058216 | MS.gene061229 | PPI |
| MS.gene044943 | MS.gene061229 | PPI |
| MS.gene062428 | MS.gene061229 | PPI |
| MS.gene59465 | MS.gene061229 | PPI |
| MS.gene68716 | MS.gene061229 | PPI |
| MS.gene014181 | MS.gene061229 | PPI |
| MS.gene68113 | MS.gene061229 | PPI |
| MS.gene64762 | MS.gene061229 | PPI |
| MS.gene00182 | MS.gene061229 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061229.t1 | MTR_3g015130 | 98.324 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 7.79e-128 | 356 |
| MS.gene061229.t1 | MTR_4g123000 | 96.648 | 179 | 6 | 0 | 1 | 179 | 1 | 179 | 4.82e-126 | 352 |
| MS.gene061229.t1 | MTR_6g027990 | 74.510 | 51 | 13 | 0 | 77 | 127 | 36 | 86 | 3.62e-19 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061229.t1 | AT1G54140 | 65.934 | 182 | 54 | 2 | 4 | 178 | 3 | 183 | 5.78e-75 | 223 |
Find 50 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTCGGTTTCTTCTAT+AGG | 0.245049 | 8.3:+5863855 | None:intergenic |
| GGATTTGAAATCAATCCTTT+TGG | 0.339035 | 8.3:+5863736 | None:intergenic |
| TTCTCTTCTTGAGACGGGTT+GGG | 0.349426 | 8.3:+5863813 | None:intergenic |
| CTTCTCTTCTTGAGACGGGT+TGG | 0.375543 | 8.3:+5863812 | None:intergenic |
| TGCACAATCTTTGCATCCCT+TGG | 0.390884 | 8.3:+5866252 | None:intergenic |
| ACATCATCAACATCAATTGC+AGG | 0.392863 | 8.3:+5866099 | None:intergenic |
| CTGTCTTCTCTTCTTGAGAC+GGG | 0.409537 | 8.3:+5863808 | None:intergenic |
| GCAGTCTTTGTTGAAATCAA+TGG | 0.422201 | 8.3:-5866232 | MS.gene061229:CDS |
| GTTTCAGGTGCTTCTAGAAC+TGG | 0.435242 | 8.3:-5864006 | MS.gene061229:intron |
| TCCCCTGCCTAAACGCCAAA+AGG | 0.448533 | 8.3:-5863751 | MS.gene061229:CDS |
| GACGGGTTGGGATCAGCATT+GGG | 0.453169 | 8.3:+5863825 | None:intergenic |
| GCAATCAATGTGTCCTGATC+GGG | 0.454600 | 8.3:+5863921 | None:intergenic |
| AGACGGGTTGGGATCAGCAT+TGG | 0.455142 | 8.3:+5863824 | None:intergenic |
| TCTGTCTTCTCTTCTTGAGA+CGG | 0.455504 | 8.3:+5863807 | None:intergenic |
| ATTTCCACTTCCACCCGATC+AGG | 0.465265 | 8.3:-5863934 | MS.gene061229:CDS |
| GGAATTGCGAACTGGTAGTT+GGG | 0.471146 | 8.3:+5863897 | None:intergenic |
| CAGCATGCTCTGAATACACT+TGG | 0.475719 | 8.3:+5866127 | None:intergenic |
| ATTGGGAACTTCTTCATCCT+CGG | 0.476115 | 8.3:+5863842 | None:intergenic |
| GGGGAAAGGACACTCTTTGA+TGG | 0.487992 | 8.3:+5863769 | None:intergenic |
| CCGAAGTCTATAGCAGGGCC+TGG | 0.490181 | 8.3:-5863957 | MS.gene061229:CDS |
| CAGTCTTTGTTGAAATCAAT+GGG | 0.492657 | 8.3:-5866231 | MS.gene061229:CDS |
| TGGAATTGCGAACTGGTAGT+TGG | 0.494497 | 8.3:+5863896 | None:intergenic |
| GTGTCCTGATCGGGTGGAAG+TGG | 0.509015 | 8.3:+5863930 | None:intergenic |
| AGTTCGCAATTCCAAACAAA+AGG | 0.527607 | 8.3:-5863887 | MS.gene061229:CDS |
| GCGAGAAGCTGAAGTTGACC+TGG | 0.535925 | 8.3:+5866058 | None:intergenic |
| GAAGTTGACCTGGGATTGAA+TGG | 0.538339 | 8.3:+5866068 | None:intergenic |
| TCGGGTGGAAGTGGAAATCC+AGG | 0.543179 | 8.3:+5863939 | None:intergenic |
| CCATTGCCGAAGTCTATAGC+AGG | 0.546952 | 8.3:-5863963 | MS.gene061229:CDS |
| TAAGCTTGCCATTCAATCCC+AGG | 0.550633 | 8.3:-5866076 | MS.gene061229:CDS |
| TTTGTTGAAATCAATGGGTG+TGG | 0.553986 | 8.3:-5866226 | MS.gene061229:CDS |
| TCGGCAATGGTATCTTGTTG+CGG | 0.554313 | 8.3:+5863976 | None:intergenic |
| GGGAAAGGACACTCTTTGAT+GGG | 0.556936 | 8.3:+5863770 | None:intergenic |
| CCAGGCCCTGCTATAGACTT+CGG | 0.558261 | 8.3:+5863957 | None:intergenic |
| TTGGCGTTTAGGCAGGGGAA+AGG | 0.562284 | 8.3:+5863755 | None:intergenic |
| AGCAATCAATGTGTCCTGAT+CGG | 0.568815 | 8.3:+5863920 | None:intergenic |
| TAAACAAGTTCCTTGAGCTA+TGG | 0.582243 | 8.3:-5866182 | MS.gene061229:CDS |
| ATCAATGTGTCCTGATCGGG+TGG | 0.588089 | 8.3:+5863924 | None:intergenic |
| AACTTCTATGGCTGATAACG+AGG | 0.605152 | 8.3:-5866289 | None:intergenic |
| CGAGAAGCTGAAGTTGACCT+GGG | 0.614371 | 8.3:+5866059 | None:intergenic |
| AGGAAGACTCGAATATGCCA+AGG | 0.614680 | 8.3:-5866269 | MS.gene061229:CDS |
| CCTGCTATAGACTTCGGCAA+TGG | 0.618852 | 8.3:+5863963 | None:intergenic |
| TGAGCTATGGTATCGCTATG+TGG | 0.621181 | 8.3:-5866169 | MS.gene061229:CDS |
| AGCATGCTCTGAATACACTT+GGG | 0.631765 | 8.3:+5866128 | None:intergenic |
| CAAGTGTATTCAGAGCATGC+TGG | 0.638922 | 8.3:-5866126 | MS.gene061229:CDS |
| CATAGCGATACCATAGCTCA+AGG | 0.639257 | 8.3:+5866172 | None:intergenic |
| AGGAACTTGTTTATCACACG+AGG | 0.647916 | 8.3:+5866192 | None:intergenic |
| GGAAAGGACACTCTTTGATG+GGG | 0.660611 | 8.3:+5863771 | None:intergenic |
| CATTGCCGAAGTCTATAGCA+GGG | 0.674815 | 8.3:-5863962 | MS.gene061229:CDS |
| GGAAGACTCGAATATGCCAA+GGG | 0.686500 | 8.3:-5866268 | MS.gene061229:CDS |
| CGAACCTATAGAAGAAACCG+AGG | 0.713717 | 8.3:-5863859 | MS.gene061229:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTACAAATAGTTTA+GGG | + | chr8.3:5865523-5865542 | None:intergenic | 10.0% |
| !! | AAACATAAAAAAAAAAGATT+AGG | - | chr8.3:5864728-5864747 | MS.gene061229:intron | 10.0% |
| !! | ATTTATTAGTAATTGTAATT+AGG | - | chr8.3:5865614-5865633 | MS.gene061229:intron | 10.0% |
| !! | TAAAAATTTACAAATAGTTT+AGG | + | chr8.3:5865524-5865543 | None:intergenic | 10.0% |
| !! | TTACAATTACTAATAAATTT+AGG | + | chr8.3:5865612-5865631 | None:intergenic | 10.0% |
| !!! | ATTACAATTTATTTTAGTTT+AGG | + | chr8.3:5865555-5865574 | None:intergenic | 10.0% |
| !!! | CTATTTGTAAATTTTTAAAT+AGG | - | chr8.3:5865527-5865546 | MS.gene061229:intron | 10.0% |
| !!! | GAAATTATTTTAAGTTTAAA+AGG | - | chr8.3:5865777-5865796 | MS.gene061229:intron | 10.0% |
| !!! | TTTTAATTAAAATGTAATCA+TGG | + | chr8.3:5864500-5864519 | None:intergenic | 10.0% |
| !! | ACAATTGAAGAATAAAATTA+AGG | - | chr8.3:5864764-5864783 | MS.gene061229:intron | 15.0% |
| !! | ATTACAAATATGTTTAATGT+AGG | - | chr8.3:5865893-5865912 | MS.gene061229:intron | 15.0% |
| !! | CAATTGAAGAATAAAATTAA+GGG | - | chr8.3:5864765-5864784 | MS.gene061229:intron | 15.0% |
| !! | TGTTAAAAAAAAAAGGTTTA+AGG | + | chr8.3:5865668-5865687 | None:intergenic | 15.0% |
| !!! | ATTAAAAACTTTTCAGTTTA+AGG | + | chr8.3:5865641-5865660 | None:intergenic | 15.0% |
| !!! | GAATATTTTTGACAAATATA+GGG | - | chr8.3:5865865-5865884 | MS.gene061229:intron | 15.0% |
| !!! | TAAACTGAAAAGTTTTTAAT+TGG | - | chr8.3:5865641-5865660 | MS.gene061229:intron | 15.0% |
| !!! | TGAATATTTTTGACAAATAT+AGG | - | chr8.3:5865864-5865883 | MS.gene061229:intron | 15.0% |
| !! | AAAGATTATTTAAAAGTCCA+GGG | - | chr8.3:5865809-5865828 | MS.gene061229:intron | 20.0% |
| !! | AATTATCATGATTGACTAAA+TGG | - | chr8.3:5864153-5864172 | MS.gene061229:intron | 20.0% |
| !! | TAAAGATTATTTAAAAGTCC+AGG | - | chr8.3:5865808-5865827 | MS.gene061229:intron | 20.0% |
| !! | TAGATTAAGAAAATAGTTCA+GGG | - | chr8.3:5865834-5865853 | MS.gene061229:intron | 20.0% |
| !! | TTATTTGAGGATTCTTAAAT+AGG | + | chr8.3:5865921-5865940 | None:intergenic | 20.0% |
| !! | TTCTTATAAATTTCGTATCA+GGG | + | chr8.3:5865234-5865253 | None:intergenic | 20.0% |
| !! | TTTCTTATAAATTTCGTATC+AGG | + | chr8.3:5865235-5865254 | None:intergenic | 20.0% |
| !!! | AAACCTTTTTTTTTTAACAG+CGG | - | chr8.3:5865669-5865688 | MS.gene061229:intron | 20.0% |
| !!! | ACAAACTATTTTAAGGTTTA+AGG | + | chr8.3:5865696-5865715 | None:intergenic | 20.0% |
| !!! | GTAATGCAATTTTTTACTAA+TGG | - | chr8.3:5864257-5864276 | MS.gene061229:intron | 20.0% |
| !!! | TAAGAAACATTTGACTTTTT+CGG | - | chr8.3:5865248-5865267 | MS.gene061229:intron | 20.0% |
| !!! | TGTTACTAAACTATCTATTT+TGG | + | chr8.3:5864381-5864400 | None:intergenic | 20.0% |
| !!! | TTTTTTAAGATTCACATGTT+TGG | - | chr8.3:5864304-5864323 | MS.gene061229:intron | 20.0% |
| ! | AAAAAAAAGATTAGGTGTCT+TGG | - | chr8.3:5864736-5864755 | MS.gene061229:intron | 25.0% |
| ! | AAGAATCCTCAAATAATTCA+TGG | - | chr8.3:5865925-5865944 | MS.gene061229:intron | 25.0% |
| ! | AATAGATGCATTTAATCCTT+TGG | + | chr8.3:5864096-5864115 | None:intergenic | 25.0% |
| ! | AATTGCATTACTATAAGAGT+TGG | + | chr8.3:5864248-5864267 | None:intergenic | 25.0% |
| ! | ATAAAAAATATTACCTCACG+AGG | + | chr8.3:5864004-5864023 | None:intergenic | 25.0% |
| ! | CTAGATTAAGAAAATAGTTC+AGG | - | chr8.3:5865833-5865852 | MS.gene061229:intron | 25.0% |
| ! | CTTGTATAAAAAAAAACCCA+GGG | + | chr8.3:5865583-5865602 | None:intergenic | 25.0% |
| ! | CTTTGTCTTATAAATAAGAC+CGG | - | chr8.3:5865347-5865366 | MS.gene061229:intron | 25.0% |
| ! | TAAAAAATATTACCTCACGA+GGG | + | chr8.3:5864003-5864022 | None:intergenic | 25.0% |
| ! | TATTAATGTCCCTAAATTCA+AGG | + | chr8.3:5865727-5865746 | None:intergenic | 25.0% |
| !! | CGAAACAAAATCTAAAATTC+AGG | + | chr8.3:5864052-5864071 | None:intergenic | 25.0% |
| !!! | GATATACTTACTTGTTTTCA+TGG | + | chr8.3:5864604-5864623 | None:intergenic | 25.0% |
| !!! | TTCAGGTTTAATTATTTTGC+AGG | - | chr8.3:5865496-5865515 | MS.gene061229:intron | 25.0% |
| !!! | TTTTTACTAGCTTAAGCTTA+TGG | - | chr8.3:5864431-5864450 | MS.gene061229:intron | 25.0% |
| AAAAAATATTACCTCACGAG+GGG | + | chr8.3:5864002-5864021 | None:intergenic | 30.0% | |
| AATTCTTGAGATGCTAAAGA+GGG | + | chr8.3:5864695-5864714 | None:intergenic | 30.0% | |
| AGAAATCTTCCTAGTTTCAA+AGG | - | chr8.3:5865013-5865032 | MS.gene061229:intron | 30.0% | |
| ATAAATTGTAATCAGATCCC+TGG | - | chr8.3:5865563-5865582 | MS.gene061229:intron | 30.0% | |
| CAGTCTTTGTTGAAATCAAT+GGG | - | chr8.3:5863797-5863816 | MS.gene061229:CDS | 30.0% | |
| CATTCAACATATCATCTTTC+AGG | + | chr8.3:5865995-5866014 | None:intergenic | 30.0% | |
| GAAGATTTCTTCTAGTAAGA+TGG | + | chr8.3:5865003-5865022 | None:intergenic | 30.0% | |
| GCTTGTATAAAAAAAAACCC+AGG | + | chr8.3:5865584-5865603 | None:intergenic | 30.0% | |
| GTAGTTCCATGAATTATTTG+AGG | + | chr8.3:5865934-5865953 | None:intergenic | 30.0% | |
| TAAATTGTAATCAGATCCCT+GGG | - | chr8.3:5865564-5865583 | MS.gene061229:intron | 30.0% | |
| TAGAATAAAGAGTCTTTGAC+CGG | + | chr8.3:5864546-5864565 | None:intergenic | 30.0% | |
| TTTGCAAATGGGCAATTTAT+GGG | + | chr8.3:5864805-5864824 | None:intergenic | 30.0% | |
| ! | AGAAAAAGAGCATATGGTAT+TGG | + | chr8.3:5865477-5865496 | None:intergenic | 30.0% |
| ! | GAAAAAGAGCATATGGTATT+GGG | + | chr8.3:5865476-5865495 | None:intergenic | 30.0% |
| ! | GCTCACTACAAACTATTTTA+AGG | + | chr8.3:5865703-5865722 | None:intergenic | 30.0% |
| ! | TATCTTCTTTCCTTTTCTGT+TGG | - | chr8.3:5864204-5864223 | MS.gene061229:intron | 30.0% |
| ! | TATTTTCTTAATCTAGTCCC+TGG | + | chr8.3:5865829-5865848 | None:intergenic | 30.0% |
| ! | TTTTGCAAATGGGCAATTTA+TGG | + | chr8.3:5864806-5864825 | None:intergenic | 30.0% |
| !! | TACTCTAGCTTTAGAGTTAT+AGG | - | chr8.3:5864926-5864945 | MS.gene061229:intron | 30.0% |
| AAAAATATTACCTCACGAGG+GGG | + | chr8.3:5864001-5864020 | None:intergenic | 35.0% | |
| AAGAATAACCTGTGTAGCTA+CGG | + | chr8.3:5865172-5865191 | None:intergenic | 35.0% | |
| ACAAATTGTAACAACTACGC+AGG | + | chr8.3:5864127-5864146 | None:intergenic | 35.0% | |
| ACATCATCAACATCAATTGC+AGG | + | chr8.3:5863932-5863951 | None:intergenic | 35.0% | |
| AGATGCATTTAATCCTTTGG+TGG | + | chr8.3:5864093-5864112 | None:intergenic | 35.0% | |
| AGTTCGCAATTCCAAACAAA+AGG | - | chr8.3:5866141-5866160 | MS.gene061229:CDS | 35.0% | |
| ATACTAAAATGTACTCCCTC+CGG | - | chr8.3:5864524-5864543 | MS.gene061229:intron | 35.0% | |
| ATTTCTTCTAGTAAGATGGC+GGG | + | chr8.3:5864999-5865018 | None:intergenic | 35.0% | |
| GAATTCTTGAGATGCTAAAG+AGG | + | chr8.3:5864696-5864715 | None:intergenic | 35.0% | |
| GATGCATTTAATCCTTTGGT+GGG | + | chr8.3:5864092-5864111 | None:intergenic | 35.0% | |
| GATTTCTTCTAGTAAGATGG+CGG | + | chr8.3:5865000-5865019 | None:intergenic | 35.0% | |
| GCAGTCTTTGTTGAAATCAA+TGG | - | chr8.3:5863796-5863815 | MS.gene061229:CDS | 35.0% | |
| GGACCGCTGTTAAAAAAAAA+AGG | + | chr8.3:5865675-5865694 | None:intergenic | 35.0% | |
| GGTCAAAGACTCTTTATTCT+AGG | - | chr8.3:5864545-5864564 | MS.gene061229:intron | 35.0% | |
| GGTCTCTTGCAAAGAATATA+GGG | - | chr8.3:5865075-5865094 | MS.gene061229:intron | 35.0% | |
| GTCTTATAAATAAGACCGGA+GGG | - | chr8.3:5865351-5865370 | MS.gene061229:intron | 35.0% | |
| GTTGAATGTAATTGCGTTTC+AGG | - | chr8.3:5866007-5866026 | MS.gene061229:intron | 35.0% | |
| TAAACAAGTTCCTTGAGCTA+TGG | - | chr8.3:5863846-5863865 | MS.gene061229:CDS | 35.0% | |
| TAGTGAGCTCCTTGAATTTA+GGG | - | chr8.3:5865715-5865734 | MS.gene061229:intron | 35.0% | |
| TGGTCTCTTGCAAAGAATAT+AGG | - | chr8.3:5865074-5865093 | MS.gene061229:intron | 35.0% | |
| TGTCTTATAAATAAGACCGG+AGG | - | chr8.3:5865350-5865369 | MS.gene061229:intron | 35.0% | |
| TTTCTAATTTCTACTCCCTC+CGG | + | chr8.3:5865369-5865388 | None:intergenic | 35.0% | |
| TTTGTTGAAATCAATGGGTG+TGG | - | chr8.3:5863802-5863821 | MS.gene061229:CDS | 35.0% | |
| ! | ACCATATGCTCTTTTTCTTC+AGG | - | chr8.3:5865479-5865498 | MS.gene061229:intron | 35.0% |
| ! | ACCTGAAGAAAAAGAGCATA+TGG | + | chr8.3:5865483-5865502 | None:intergenic | 35.0% |
| !! | GTATATCTAAAGTGCGCTTT+TGG | + | chr8.3:5864899-5864918 | None:intergenic | 35.0% |
| !! | TTTTGTTTGGAATTGCGAAC+TGG | + | chr8.3:5866142-5866161 | None:intergenic | 35.0% |
| AAAGCTAGAGCCAACAGAAA+AGG | + | chr8.3:5864217-5864236 | None:intergenic | 40.0% | |
| AATAAAGAGTCTTTGACCGG+AGG | + | chr8.3:5864543-5864562 | None:intergenic | 40.0% | |
| AATCGAATGCTCAACACAAC+AGG | - | chr8.3:5864640-5864659 | MS.gene061229:intron | 40.0% | |
| AGCAATCAATGTGTCCTGAT+CGG | + | chr8.3:5866111-5866130 | None:intergenic | 40.0% | |
| ATAAAGAGTCTTTGACCGGA+GGG | + | chr8.3:5864542-5864561 | None:intergenic | 40.0% | |
| ATCATCAACAAACCCACCAA+AGG | - | chr8.3:5864077-5864096 | MS.gene061229:intron | 40.0% | |
| ATTGGGAACTTCTTCATCCT+CGG | + | chr8.3:5866189-5866208 | None:intergenic | 40.0% | |
| ATTGGGTTACATGACACACA+AGG | + | chr8.3:5865459-5865478 | None:intergenic | 40.0% | |
| CTCTTGCAAAGAATATAGGG+AGG | - | chr8.3:5865078-5865097 | MS.gene061229:intron | 40.0% | |
| GTAGTGAGCTCCTTGAATTT+AGG | - | chr8.3:5865714-5865733 | MS.gene061229:intron | 40.0% | |
| TCACATGTTTGGACTGAGAT+TGG | - | chr8.3:5864315-5864334 | MS.gene061229:intron | 40.0% | |
| TCATCCTCGGTTTCTTCTAT+AGG | + | chr8.3:5866176-5866195 | None:intergenic | 40.0% | |
| TCTGTCTTCTCTTCTTGAGA+CGG | + | chr8.3:5866224-5866243 | None:intergenic | 40.0% | |
| TGAGCTGGTAGCTAACAAAA+TGG | + | chr8.3:5865406-5865425 | None:intergenic | 40.0% | |
| ! | AGCATGCTCTGAATACACTT+GGG | + | chr8.3:5863903-5863922 | None:intergenic | 40.0% |
| ! | AGGAACTTGTTTATCACACG+AGG | + | chr8.3:5863839-5863858 | None:intergenic | 40.0% |
| ! | ATGCCTAGTGCTTTTGCAAA+TGG | + | chr8.3:5864817-5864836 | None:intergenic | 40.0% |
| ! | TGCCTAGTGCTTTTGCAAAT+GGG | + | chr8.3:5864816-5864835 | None:intergenic | 40.0% |
| ! | TTTAGAGTTATAGGCTGCGA+CGG | - | chr8.3:5864935-5864954 | MS.gene061229:intron | 40.0% |
| !! | ACAAAGGCACCTTTGAAACT+AGG | + | chr8.3:5865025-5865044 | None:intergenic | 40.0% |
| !! | TTGGTGGGTTTGTTGATGAT+TGG | + | chr8.3:5864077-5864096 | None:intergenic | 40.0% |
| AGGAAGACTCGAATATGCCA+AGG | - | chr8.3:5863759-5863778 | MS.gene061229:CDS | 45.0% | |
| ATGAGCACAGCACCTATGTA+TGG | + | chr8.3:5865110-5865129 | None:intergenic | 45.0% | |
| CAAGTGTATTCAGAGCATGC+TGG | - | chr8.3:5863902-5863921 | MS.gene061229:CDS | 45.0% | |
| CAGGATGTACCTTATCCCTT+TGG | - | chr8.3:5864659-5864678 | MS.gene061229:intron | 45.0% | |
| CATAGCGATACCATAGCTCA+AGG | + | chr8.3:5863859-5863878 | None:intergenic | 45.0% | |
| CATTGCCGAAGTCTATAGCA+GGG | - | chr8.3:5866066-5866085 | MS.gene061229:CDS | 45.0% | |
| CCAGCTCATGAGTTGTAATC+AGG | - | chr8.3:5865418-5865437 | MS.gene061229:intron | 45.0% | |
| CCTGATTACAACTCATGAGC+TGG | + | chr8.3:5865421-5865440 | None:intergenic | 45.0% | |
| CGAACCTATAGAAGAAACCG+AGG | - | chr8.3:5866169-5866188 | MS.gene061229:CDS | 45.0% | |
| CTGTCTTCTCTTCTTGAGAC+GGG | + | chr8.3:5866223-5866242 | None:intergenic | 45.0% | |
| GAAGTTGACCTGGGATTGAA+TGG | + | chr8.3:5863963-5863982 | None:intergenic | 45.0% | |
| GCAATCAATGTGTCCTGATC+GGG | + | chr8.3:5866110-5866129 | None:intergenic | 45.0% | |
| GGAAAGGACACTCTTTGATG+GGG | + | chr8.3:5866260-5866279 | None:intergenic | 45.0% | |
| GGAAGACTCGAATATGCCAA+GGG | - | chr8.3:5863760-5863779 | MS.gene061229:CDS | 45.0% | |
| GGAATTGCGAACTGGTAGTT+GGG | + | chr8.3:5866134-5866153 | None:intergenic | 45.0% | |
| GGGAAAGGACACTCTTTGAT+GGG | + | chr8.3:5866261-5866280 | None:intergenic | 45.0% | |
| TAAGCTTGCCATTCAATCCC+AGG | - | chr8.3:5863952-5863971 | MS.gene061229:CDS | 45.0% | |
| TCGGCAATGGTATCTTGTTG+CGG | + | chr8.3:5866055-5866074 | None:intergenic | 45.0% | |
| TGAGCACAGCACCTATGTAT+GGG | + | chr8.3:5865109-5865128 | None:intergenic | 45.0% | |
| TGAGCTATGGTATCGCTATG+TGG | - | chr8.3:5863859-5863878 | MS.gene061229:CDS | 45.0% | |
| TGCACAATCTTTGCATCCCT+TGG | + | chr8.3:5863779-5863798 | None:intergenic | 45.0% | |
| TGGAATTGCGAACTGGTAGT+TGG | + | chr8.3:5866135-5866154 | None:intergenic | 45.0% | |
| TTGAGATGCTAAAGAGGGAC+TGG | + | chr8.3:5864690-5864709 | None:intergenic | 45.0% | |
| ! | AATCCTTTTGGCGTTTAGGC+AGG | + | chr8.3:5866283-5866302 | None:intergenic | 45.0% |
| ! | ATCCTTTTGGCGTTTAGGCA+GGG | + | chr8.3:5866282-5866301 | None:intergenic | 45.0% |
| ! | CAGCATGCTCTGAATACACT+TGG | + | chr8.3:5863904-5863923 | None:intergenic | 45.0% |
| ! | GGTTCGACAGACCTTTTGTT+TGG | + | chr8.3:5866155-5866174 | None:intergenic | 45.0% |
| ! | TTCTCTTCTTGAGACGGGTT+GGG | + | chr8.3:5866218-5866237 | None:intergenic | 45.0% |
| !! | GTTTCAGGTGCTTCTAGAAC+TGG | - | chr8.3:5866022-5866041 | MS.gene061229:intron | 45.0% |
| !! | TCAAAGGTGCCTTTGTAGCA+AGG | - | chr8.3:5865029-5865048 | MS.gene061229:intron | 45.0% |
| !! | TCTGTTGGCTCTAGCTTTCT+TGG | - | chr8.3:5864219-5864238 | MS.gene061229:intron | 45.0% |
| !! | TGCCCATTTGCAAAAGCACT+AGG | - | chr8.3:5864811-5864830 | MS.gene061229:intron | 45.0% |
| !!! | AAATTATTTTAAGTTTAAAA+GGG | - | chr8.3:5865778-5865797 | MS.gene061229:intron | 5.0% |
| !!! | ACAAATTATTTAAAATTTTA+GGG | - | chr8.3:5865746-5865765 | MS.gene061229:intron | 5.0% |
| !!! | TACAAATTATTTAAAATTTT+AGG | - | chr8.3:5865745-5865764 | MS.gene061229:intron | 5.0% |
| AATATTACCTCACGAGGGGG+TGG | + | chr8.3:5863998-5864017 | None:intergenic | 50.0% | |
| ATCAATGTGTCCTGATCGGG+TGG | + | chr8.3:5866107-5866126 | None:intergenic | 50.0% | |
| ATGCCGCAAAAGTTCAGGGA+CGG | - | chr8.3:5865146-5865165 | MS.gene061229:intron | 50.0% | |
| ATGCTAAAGAGGGACTGGAC+TGG | + | chr8.3:5864685-5864704 | None:intergenic | 50.0% | |
| ATTTCCACTTCCACCCGATC+AGG | - | chr8.3:5866094-5866113 | MS.gene061229:CDS | 50.0% | |
| CCATTGCCGAAGTCTATAGC+AGG | - | chr8.3:5866065-5866084 | MS.gene061229:CDS | 50.0% | |
| CCTGCTATAGACTTCGGCAA+TGG | + | chr8.3:5866068-5866087 | None:intergenic | 50.0% | |
| CGAGAAGCTGAAGTTGACCT+GGG | + | chr8.3:5863972-5863991 | None:intergenic | 50.0% | |
| CGTATCAGGGCTTCTGTTTG+TGG | + | chr8.3:5865221-5865240 | None:intergenic | 50.0% | |
| CTTCTCTTCTTGAGACGGGT+TGG | + | chr8.3:5866219-5866238 | None:intergenic | 50.0% | |
| GACGGTGGAAGTAGAGGTTT+AGG | - | chr8.3:5864953-5864972 | MS.gene061229:intron | 50.0% | |
| GATGCTCCTCCTTGCTACAA+AGG | + | chr8.3:5865041-5865060 | None:intergenic | 50.0% | |
| GGCAATGCCGCAAAAGTTCA+GGG | - | chr8.3:5865142-5865161 | MS.gene061229:intron | 50.0% | |
| GGGGAAAGGACACTCTTTGA+TGG | + | chr8.3:5866262-5866281 | None:intergenic | 50.0% | |
| ! | AACTTTTGCGGCATTGCCCA+TGG | + | chr8.3:5865140-5865159 | None:intergenic | 50.0% |
| ! | AAGGTGCCTTTGTAGCAAGG+AGG | - | chr8.3:5865032-5865051 | MS.gene061229:intron | 50.0% |
| ! | TCCTTTTGGCGTTTAGGCAG+GGG | + | chr8.3:5866281-5866300 | None:intergenic | 50.0% |
| !! | GGGAGGTATTGCCCATACAT+AGG | - | chr8.3:5865095-5865114 | MS.gene061229:intron | 50.0% |
| AGAGTTATAGGCTGCGACGG+TGG | - | chr8.3:5864938-5864957 | MS.gene061229:intron | 55.0% | |
| CCAGGCCCTGCTATAGACTT+CGG | + | chr8.3:5866074-5866093 | None:intergenic | 55.0% | |
| GCGAGAAGCTGAAGTTGACC+TGG | + | chr8.3:5863973-5863992 | None:intergenic | 55.0% | |
| GGGCAATGCCGCAAAAGTTC+AGG | - | chr8.3:5865141-5865160 | MS.gene061229:intron | 55.0% | |
| TCCCCTGCCTAAACGCCAAA+AGG | - | chr8.3:5866277-5866296 | MS.gene061229:CDS | 55.0% | |
| TCGGGTGGAAGTGGAAATCC+AGG | + | chr8.3:5866092-5866111 | None:intergenic | 55.0% | |
| TGTGCTCATGCCCATGCCAT+GGG | - | chr8.3:5865121-5865140 | MS.gene061229:intron | 55.0% | |
| TTGGCGTTTAGGCAGGGGAA+AGG | + | chr8.3:5866276-5866295 | None:intergenic | 55.0% | |
| !! | AAGGAGGAGCATCGACTGTG+TGG | - | chr8.3:5865048-5865067 | MS.gene061229:intron | 55.0% |
| !! | AGACGGGTTGGGATCAGCAT+TGG | + | chr8.3:5866207-5866226 | None:intergenic | 55.0% |
| !! | AGGAGGAGCATCGACTGTGT+GGG | - | chr8.3:5865049-5865068 | MS.gene061229:intron | 55.0% |
| !! | ATGGCGGGCAAAGTCTAGCA+GGG | + | chr8.3:5864984-5865003 | None:intergenic | 55.0% |
| !! | CTGGACTGGCCAAAGGGATA+AGG | + | chr8.3:5864671-5864690 | None:intergenic | 55.0% |
| !! | GACGGGTTGGGATCAGCATT+GGG | + | chr8.3:5866206-5866225 | None:intergenic | 55.0% |
| !! | GAGCATCGACTGTGTGGGAA+TGG | - | chr8.3:5865054-5865073 | MS.gene061229:intron | 55.0% |
| CCGAAGTCTATAGCAGGGCC+TGG | - | chr8.3:5866071-5866090 | MS.gene061229:CDS | 60.0% | |
| CTGTGCTCATGCCCATGCCA+TGG | - | chr8.3:5865120-5865139 | MS.gene061229:intron | 60.0% | |
| GTGTCCTGATCGGGTGGAAG+TGG | + | chr8.3:5866101-5866120 | None:intergenic | 60.0% | |
| TGCGGCATTGCCCATGGCAT+GGG | + | chr8.3:5865134-5865153 | None:intergenic | 60.0% | |
| TTGCGGCATTGCCCATGGCA+TGG | + | chr8.3:5865135-5865154 | None:intergenic | 60.0% | |
| ! | CGGCCGTCCCTGAACTTTTG+CGG | + | chr8.3:5865152-5865171 | None:intergenic | 60.0% |
| ! | TGGCGGGCAAAGTCTAGCAG+GGG | + | chr8.3:5864983-5865002 | None:intergenic | 60.0% |
| !! | AGAGGGACTGGACTGGCCAA+AGG | + | chr8.3:5864678-5864697 | None:intergenic | 60.0% |
| !! | GAGGGACTGGACTGGCCAAA+GGG | + | chr8.3:5864677-5864696 | None:intergenic | 60.0% |
| !! | GATGGCGGGCAAAGTCTAGC+AGG | + | chr8.3:5864985-5865004 | None:intergenic | 60.0% |
| AGGGACGGCCGTAGCTACAC+AGG | - | chr8.3:5865161-5865180 | MS.gene061229:intron | 65.0% | |
| GGCTGCGACGGTGGAAGTAG+AGG | - | chr8.3:5864947-5864966 | MS.gene061229:intron | 65.0% | |
| CTCGCAACCACCCCCTCGTG+AGG | - | chr8.3:5863988-5864007 | MS.gene061229:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 5863746 | 5866304 | 5863746 | ID=MS.gene061229 |
| chr8.3 | mRNA | 5863746 | 5866304 | 5863746 | ID=MS.gene061229.t1;Parent=MS.gene061229 |
| chr8.3 | exon | 5866041 | 5866304 | 5866041 | ID=MS.gene061229.t1.exon1;Parent=MS.gene061229.t1 |
| chr8.3 | CDS | 5866041 | 5866304 | 5866041 | ID=cds.MS.gene061229.t1;Parent=MS.gene061229.t1 |
| chr8.3 | exon | 5863746 | 5864021 | 5863746 | ID=MS.gene061229.t1.exon2;Parent=MS.gene061229.t1 |
| chr8.3 | CDS | 5863746 | 5864021 | 5863746 | ID=cds.MS.gene061229.t1;Parent=MS.gene061229.t1 |
| Gene Sequence |
| Protein sequence |
