AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26816

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26816.t1 MTR_3g015130 98.883 179 2 0 1 179 1 179 3.03e-128 357
MS.gene26816.t1 MTR_4g123000 97.207 179 5 0 1 179 1 179 1.59e-126 353
MS.gene26816.t1 MTR_6g027990 74.510 51 13 0 77 127 36 86 3.50e-19 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26816.t1 AT1G54140 66.484 182 53 2 4 178 3 183 1.73e-75 224

Find 50 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTCGGTTTCTTCTAT+AGG 0.245049 8.2:+10706514 None:intergenic
GGATTTGAAATCAATCCTTT+TGG 0.339035 8.2:+10706395 None:intergenic
TTCTCTTCTTGAGACGGGTT+GGG 0.349426 8.2:+10706472 None:intergenic
CTTCTCTTCTTGAGACGGGT+TGG 0.375543 8.2:+10706471 None:intergenic
TGCACAATCTTTGCATCCCT+TGG 0.390884 8.2:+10708914 None:intergenic
ACATCATCAACATCAATTGC+AGG 0.392863 8.2:+10708761 None:intergenic
CTGTCTTCTCTTCTTGAGAC+GGG 0.409537 8.2:+10706467 None:intergenic
GCAGTCTTTGTTGAAATCAA+TGG 0.422201 8.2:-10708894 MS.gene26816:CDS
GTTTCAGGTGCTTCTAGAAC+TGG 0.435242 8.2:-10706665 MS.gene26816:intron
CAGCATGCTCTGAATACACT+TGG 0.446853 8.2:+10708789 None:intergenic
TCCCCTGCCTAAACGCCAAA+AGG 0.448533 8.2:-10706410 MS.gene26816:CDS
GACGGGTTGGGATCAGCATT+GGG 0.453169 8.2:+10706484 None:intergenic
GCAATCAATGTGTCCTGATC+GGG 0.454600 8.2:+10706580 None:intergenic
AGACGGGTTGGGATCAGCAT+TGG 0.455142 8.2:+10706483 None:intergenic
TCTGTCTTCTCTTCTTGAGA+CGG 0.455504 8.2:+10706466 None:intergenic
ATTTCCACTTCCACCCGATC+AGG 0.465265 8.2:-10706593 MS.gene26816:CDS
GGAATTGCGAACTGGTAGTT+GGG 0.471146 8.2:+10706556 None:intergenic
ATTGGGAACTTCTTCATCCT+CGG 0.476115 8.2:+10706501 None:intergenic
GGGGAAAGGACACTCTTTGA+TGG 0.487992 8.2:+10706428 None:intergenic
CCGAAGTCTATAGCAGGGCC+TGG 0.490181 8.2:-10706616 MS.gene26816:CDS
CAGTCTTTGTTGAAATCAAT+GGG 0.492657 8.2:-10708893 MS.gene26816:CDS
TGGAATTGCGAACTGGTAGT+TGG 0.494497 8.2:+10706555 None:intergenic
GTGTCCTGATCGGGTGGAAG+TGG 0.509015 8.2:+10706589 None:intergenic
AGTTCGCAATTCCAAACAAA+AGG 0.527607 8.2:-10706546 MS.gene26816:CDS
GCGAGAAGCTGAAGTTGACC+TGG 0.535925 8.2:+10708720 None:intergenic
GAAGTTGACCTGGGATTGAA+TGG 0.538339 8.2:+10708730 None:intergenic
TCGGGTGGAAGTGGAAATCC+AGG 0.543179 8.2:+10706598 None:intergenic
CCATTGCCGAAGTCTATAGC+AGG 0.546952 8.2:-10706622 MS.gene26816:CDS
TAAGCTTGCCATTCAATCCC+AGG 0.550633 8.2:-10708738 MS.gene26816:CDS
TTTGTTGAAATCAATGGGTG+TGG 0.553986 8.2:-10708888 MS.gene26816:CDS
TCGGCAATGGTATCTTGTTG+CGG 0.554313 8.2:+10706635 None:intergenic
GGGAAAGGACACTCTTTGAT+GGG 0.556936 8.2:+10706429 None:intergenic
CCAGGCCCTGCTATAGACTT+CGG 0.558261 8.2:+10706616 None:intergenic
TTGGCGTTTAGGCAGGGGAA+AGG 0.562284 8.2:+10706414 None:intergenic
AGCAATCAATGTGTCCTGAT+CGG 0.568815 8.2:+10706579 None:intergenic
TAAACAAGTTCCTTGAGCTA+TGG 0.582243 8.2:-10708844 MS.gene26816:CDS
ATCAATGTGTCCTGATCGGG+TGG 0.588089 8.2:+10706583 None:intergenic
AACTTCTATGGCTGATAACG+AGG 0.605152 8.2:-10708951 None:intergenic
CGAGAAGCTGAAGTTGACCT+GGG 0.614371 8.2:+10708721 None:intergenic
AGGAAGACTCGAATATGCCA+AGG 0.614680 8.2:-10708931 MS.gene26816:CDS
CCTGCTATAGACTTCGGCAA+TGG 0.618852 8.2:+10706622 None:intergenic
TGAGCTATGGTATCGCTATG+TGG 0.621181 8.2:-10708831 MS.gene26816:CDS
CAAGTGTATTCAGAGCATGC+TGG 0.622216 8.2:-10708788 MS.gene26816:CDS
AGCATGCTCTGAATACACTT+GGG 0.635501 8.2:+10708790 None:intergenic
CATAGCGATACCATAGCTCA+AGG 0.639257 8.2:+10708834 None:intergenic
AGGAACTTGTTTATCACACG+AGG 0.647916 8.2:+10708854 None:intergenic
GGAAAGGACACTCTTTGATG+GGG 0.660611 8.2:+10706430 None:intergenic
CATTGCCGAAGTCTATAGCA+GGG 0.674815 8.2:-10706621 MS.gene26816:CDS
GGAAGACTCGAATATGCCAA+GGG 0.686500 8.2:-10708930 MS.gene26816:CDS
CGAACCTATAGAAGAAACCG+AGG 0.713717 8.2:-10706518 MS.gene26816:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTACAAATAGTTTA+GGG + chr8.2:10708185-10708204 None:intergenic 10.0%
!! ATTTATTAGTAATTGTAATT+AGG - chr8.2:10708276-10708295 MS.gene26816:intron 10.0%
!! TAAAAATTTACAAATAGTTT+AGG + chr8.2:10708186-10708205 None:intergenic 10.0%
!! TTACAATTACTAATAAATTT+AGG + chr8.2:10708274-10708293 None:intergenic 10.0%
!!! ATTACAATTTATTTTAGTTT+AGG + chr8.2:10708217-10708236 None:intergenic 10.0%
!!! CTATTTGTAAATTTTTAAAT+AGG - chr8.2:10708189-10708208 MS.gene26816:intron 10.0%
!!! GAAATTATTTTAAGTTTAAA+AGG - chr8.2:10708439-10708458 MS.gene26816:intron 10.0%
!!! TTACAATTTATTTTAGTTTA+GGG + chr8.2:10708216-10708235 None:intergenic 10.0%
!!! TTTTAATTAAAATGTAATCA+TGG + chr8.2:10707158-10707177 None:intergenic 10.0%
!! AAACATAAAAAAAAAAGAGT+AGG - chr8.2:10707386-10707405 MS.gene26816:intron 15.0%
!! ACAATTGAAGAATAAAATTA+AGG - chr8.2:10707422-10707441 MS.gene26816:intron 15.0%
!! ATTACAAATATGTTTAATGT+AGG - chr8.2:10708555-10708574 MS.gene26816:intron 15.0%
!! CAATTGAAGAATAAAATTAA+GGG - chr8.2:10707423-10707442 MS.gene26816:intron 15.0%
!! TGTTAAAAAAAAAAGGTTTA+AGG + chr8.2:10708330-10708349 None:intergenic 15.0%
!!! ATTAAAAACTTTTCAGTTTA+AGG + chr8.2:10708303-10708322 None:intergenic 15.0%
!!! GAATATTTTTGACAAATATA+GGG - chr8.2:10708527-10708546 MS.gene26816:intron 15.0%
!!! TAAACTGAAAAGTTTTTAAT+TGG - chr8.2:10708303-10708322 MS.gene26816:intron 15.0%
!!! TGAATATTTTTGACAAATAT+AGG - chr8.2:10708526-10708545 MS.gene26816:intron 15.0%
!! AAAGATTATTTAAAAGTCCA+GGG - chr8.2:10708471-10708490 MS.gene26816:intron 20.0%
!! AATTATCATGATTGACTAAA+TGG - chr8.2:10706812-10706831 MS.gene26816:intron 20.0%
!! TAAAGATTATTTAAAAGTCC+AGG - chr8.2:10708470-10708489 MS.gene26816:intron 20.0%
!! TAGATTAAGAAAATAGTTCA+GGG - chr8.2:10708496-10708515 MS.gene26816:intron 20.0%
!! TTATTTGAGGATTCTTAAAT+AGG + chr8.2:10708583-10708602 None:intergenic 20.0%
!! TTCTTATAAATTTCGTATCA+GGG + chr8.2:10707896-10707915 None:intergenic 20.0%
!! TTTCTTATAAATTTCGTATC+AGG + chr8.2:10707897-10707916 None:intergenic 20.0%
!!! AAACCTTTTTTTTTTAACAG+CGG - chr8.2:10708331-10708350 MS.gene26816:intron 20.0%
!!! ACAAACTATTTTAAGGTTTA+AGG + chr8.2:10708358-10708377 None:intergenic 20.0%
!!! ATCATGGCATTTTTTTTTTT+TGG + chr8.2:10707142-10707161 None:intergenic 20.0%
!!! GTAATGCAATTTTTTACTAA+TGG - chr8.2:10706916-10706935 MS.gene26816:intron 20.0%
!!! TAAGAAACATTTGACTTTTT+CGG - chr8.2:10707910-10707929 MS.gene26816:intron 20.0%
!!! TGTTACTAAACTATCTATTT+TGG + chr8.2:10707040-10707059 None:intergenic 20.0%
!!! TTTTTTAAGATTCACATGTT+TGG - chr8.2:10706963-10706982 MS.gene26816:intron 20.0%
! AAGAATCCTCAAATAATTCA+TGG - chr8.2:10708587-10708606 MS.gene26816:intron 25.0%
! AATAGATGCATTTAATCCTT+TGG + chr8.2:10706755-10706774 None:intergenic 25.0%
! AATTGCATTACTATAAGAGT+TGG + chr8.2:10706907-10706926 None:intergenic 25.0%
! ATAAAAAATATTACCTCACG+AGG + chr8.2:10706663-10706682 None:intergenic 25.0%
! CTAGATTAAGAAAATAGTTC+AGG - chr8.2:10708495-10708514 MS.gene26816:intron 25.0%
! CTTGTATAAAAAAAAACCCA+GGG + chr8.2:10708245-10708264 None:intergenic 25.0%
! CTTTGTCTTATAAATAAGAC+CGG - chr8.2:10708009-10708028 MS.gene26816:intron 25.0%
! TAAAAAATATTACCTCACGA+GGG + chr8.2:10706662-10706681 None:intergenic 25.0%
! TATTAATGTCCCTAAATTCA+AGG + chr8.2:10708389-10708408 None:intergenic 25.0%
!! CGAAACAAAATCTAAAATTC+AGG + chr8.2:10706711-10706730 None:intergenic 25.0%
!!! GATATACTTACTTGTTTTCA+TGG + chr8.2:10707262-10707281 None:intergenic 25.0%
!!! TTCAGGTTTAATTATTTTGC+AGG - chr8.2:10708158-10708177 MS.gene26816:intron 25.0%
!!! TTTTTACTAGCTTAAGCTTA+TGG - chr8.2:10707090-10707109 MS.gene26816:intron 25.0%
AAAAAAAAGAGTAGGTGTCT+TGG - chr8.2:10707394-10707413 MS.gene26816:intron 30.0%
AAAAAATATTACCTCACGAG+GGG + chr8.2:10706661-10706680 None:intergenic 30.0%
AATTCTTGAGATGCTAAAGA+GGG + chr8.2:10707353-10707372 None:intergenic 30.0%
AGAAATCTTCCTAGTTTCAA+AGG - chr8.2:10707671-10707690 MS.gene26816:intron 30.0%
ATAAATTGTAATCAGATCCC+TGG - chr8.2:10708225-10708244 MS.gene26816:intron 30.0%
CAGTCTTTGTTGAAATCAAT+GGG - chr8.2:10706456-10706475 MS.gene26816:CDS 30.0%
CATTCAACATATCATCTTTC+AGG + chr8.2:10708657-10708676 None:intergenic 30.0%
GAAGATTTCTTCTAGTAAGA+TGG + chr8.2:10707661-10707680 None:intergenic 30.0%
GCTTGTATAAAAAAAAACCC+AGG + chr8.2:10708246-10708265 None:intergenic 30.0%
GTAGTTCCATGAATTATTTG+AGG + chr8.2:10708596-10708615 None:intergenic 30.0%
TAAATTGTAATCAGATCCCT+GGG - chr8.2:10708226-10708245 MS.gene26816:intron 30.0%
TAGAATAAAGAGTCTTTGAC+CGG + chr8.2:10707204-10707223 None:intergenic 30.0%
TTTGCAAATGGGCAATTTAT+GGG + chr8.2:10707463-10707482 None:intergenic 30.0%
! AGAAAAAGAGCATATGGTAT+TGG + chr8.2:10708139-10708158 None:intergenic 30.0%
! GAAAAAGAGCATATGGTATT+GGG + chr8.2:10708138-10708157 None:intergenic 30.0%
! GCTCACTACAAACTATTTTA+AGG + chr8.2:10708365-10708384 None:intergenic 30.0%
! TATCTTCTTTCCTTTTCTGT+TGG - chr8.2:10706863-10706882 MS.gene26816:intron 30.0%
! TATTTTCTTAATCTAGTCCC+TGG + chr8.2:10708491-10708510 None:intergenic 30.0%
! TTTTGCAAATGGGCAATTTA+TGG + chr8.2:10707464-10707483 None:intergenic 30.0%
!! TACTCTAGCTTTAGAGTTAT+AGG - chr8.2:10707584-10707603 MS.gene26816:intron 30.0%
AAAAATATTACCTCACGAGG+GGG + chr8.2:10706660-10706679 None:intergenic 35.0%
AAGAATAACCTGTGTAGCTA+CGG + chr8.2:10707830-10707849 None:intergenic 35.0%
ACAAATTGTAACAACTACGC+AGG + chr8.2:10706786-10706805 None:intergenic 35.0%
ACATCATCAACATCAATTGC+AGG + chr8.2:10706591-10706610 None:intergenic 35.0%
AGATGCATTTAATCCTTTGG+TGG + chr8.2:10706752-10706771 None:intergenic 35.0%
AGTTCGCAATTCCAAACAAA+AGG - chr8.2:10708803-10708822 MS.gene26816:CDS 35.0%
ATACTAAAATGTACTCCCTC+CGG - chr8.2:10707182-10707201 MS.gene26816:intron 35.0%
ATTTCTTCTAGTAAGATGGC+AGG + chr8.2:10707657-10707676 None:intergenic 35.0%
GAATTCTTGAGATGCTAAAG+AGG + chr8.2:10707354-10707373 None:intergenic 35.0%
GATGCATTTAATCCTTTGGT+GGG + chr8.2:10706751-10706770 None:intergenic 35.0%
GCAGTCTTTGTTGAAATCAA+TGG - chr8.2:10706455-10706474 MS.gene26816:CDS 35.0%
GGACCGCTGTTAAAAAAAAA+AGG + chr8.2:10708337-10708356 None:intergenic 35.0%
GGTCAAAGACTCTTTATTCT+AGG - chr8.2:10707203-10707222 MS.gene26816:intron 35.0%
GGTCTCTTGCAAAGAATATA+GGG - chr8.2:10707733-10707752 MS.gene26816:intron 35.0%
GTCTTATAAATAAGACCGGA+GGG - chr8.2:10708013-10708032 MS.gene26816:intron 35.0%
GTTGAATGTAATTGCGTTTC+AGG - chr8.2:10708669-10708688 MS.gene26816:intron 35.0%
TAAACAAGTTCCTTGAGCTA+TGG - chr8.2:10706505-10706524 MS.gene26816:CDS 35.0%
TAGTGAGCTCCTTGAATTTA+GGG - chr8.2:10708377-10708396 MS.gene26816:intron 35.0%
TGAGCTGGTAACTAACAAAA+TGG + chr8.2:10708068-10708087 None:intergenic 35.0%
TGGTCTCTTGCAAAGAATAT+AGG - chr8.2:10707732-10707751 MS.gene26816:intron 35.0%
TGTCTTATAAATAAGACCGG+AGG - chr8.2:10708012-10708031 MS.gene26816:intron 35.0%
TTTGTTGAAATCAATGGGTG+TGG - chr8.2:10706461-10706480 MS.gene26816:CDS 35.0%
! ACCATATGCTCTTTTTCTTC+AGG - chr8.2:10708141-10708160 MS.gene26816:intron 35.0%
! ACCTGAAGAAAAAGAGCATA+TGG + chr8.2:10708145-10708164 None:intergenic 35.0%
!! GTATATCTAAAGTGCGCTTT+TGG + chr8.2:10707557-10707576 None:intergenic 35.0%
!! TTTTGTTTGGAATTGCGAAC+TGG + chr8.2:10708804-10708823 None:intergenic 35.0%
AAAGCTAGAGCCAACAGAAA+AGG + chr8.2:10706876-10706895 None:intergenic 40.0%
AATAAAGAGTCTTTGACCGG+AGG + chr8.2:10707201-10707220 None:intergenic 40.0%
AATCGAATGCTCAACACAAC+AGG - chr8.2:10707298-10707317 MS.gene26816:intron 40.0%
AGCAATCAATGTGTCCTGAT+CGG + chr8.2:10708773-10708792 None:intergenic 40.0%
ATAAAGAGTCTTTGACCGGA+GGG + chr8.2:10707200-10707219 None:intergenic 40.0%
ATCATCAACAAACCCACCAA+AGG - chr8.2:10706736-10706755 MS.gene26816:intron 40.0%
ATTGGGAACTTCTTCATCCT+CGG + chr8.2:10708851-10708870 None:intergenic 40.0%
ATTGGGTTACATGACACACA+AGG + chr8.2:10708121-10708140 None:intergenic 40.0%
CTCTTGCAAAGAATATAGGG+AGG - chr8.2:10707736-10707755 MS.gene26816:intron 40.0%
GTAGTGAGCTCCTTGAATTT+AGG - chr8.2:10708376-10708395 MS.gene26816:intron 40.0%
TCACATGTTTGGACTGAGAT+TGG - chr8.2:10706974-10706993 MS.gene26816:intron 40.0%
TCATCCTCGGTTTCTTCTAT+AGG + chr8.2:10708838-10708857 None:intergenic 40.0%
TCTGTCTTCTCTTCTTGAGA+CGG + chr8.2:10708886-10708905 None:intergenic 40.0%
TTTCTAATCTCTACTCCCTC+CGG + chr8.2:10708031-10708050 None:intergenic 40.0%
! AGCATGCTCTGAATACACTT+GGG + chr8.2:10706562-10706581 None:intergenic 40.0%
! AGGAACTTGTTTATCACACG+AGG + chr8.2:10706498-10706517 None:intergenic 40.0%
! ATGCCTAGTGCTTTTGCAAA+TGG + chr8.2:10707475-10707494 None:intergenic 40.0%
! TGCCTAGTGCTTTTGCAAAT+GGG + chr8.2:10707474-10707493 None:intergenic 40.0%
! TTTAGAGTTATAGGCTGCGA+CGG - chr8.2:10707593-10707612 MS.gene26816:intron 40.0%
!! ACAAAGGCACCTTTGAAACT+AGG + chr8.2:10707683-10707702 None:intergenic 40.0%
!! TTGGTGGGTTTGTTGATGAT+TGG + chr8.2:10706736-10706755 None:intergenic 40.0%
AGGAAGACTCGAATATGCCA+AGG - chr8.2:10706418-10706437 MS.gene26816:CDS 45.0%
ATGAGCACAGCACCTATGTA+TGG + chr8.2:10707768-10707787 None:intergenic 45.0%
CAAGTGTATTCAGAGCATGC+TGG - chr8.2:10706561-10706580 MS.gene26816:CDS 45.0%
CAGGATGTACCTTATCCCTT+TGG - chr8.2:10707317-10707336 MS.gene26816:intron 45.0%
CATAGCGATACCATAGCTCA+AGG + chr8.2:10706518-10706537 None:intergenic 45.0%
CATTGCCGAAGTCTATAGCA+GGG - chr8.2:10708728-10708747 MS.gene26816:CDS 45.0%
CCAGCTCATGAGTTGTAATC+AGG - chr8.2:10708080-10708099 MS.gene26816:intron 45.0%
CCTGATTACAACTCATGAGC+TGG + chr8.2:10708083-10708102 None:intergenic 45.0%
CGAACCTATAGAAGAAACCG+AGG - chr8.2:10708831-10708850 MS.gene26816:CDS 45.0%
CTGTCTTCTCTTCTTGAGAC+GGG + chr8.2:10708885-10708904 None:intergenic 45.0%
GAAGTTGACCTGGGATTGAA+TGG + chr8.2:10706622-10706641 None:intergenic 45.0%
GCAATCAATGTGTCCTGATC+GGG + chr8.2:10708772-10708791 None:intergenic 45.0%
GGAAAGGACACTCTTTGATG+GGG + chr8.2:10708922-10708941 None:intergenic 45.0%
GGAAGACTCGAATATGCCAA+GGG - chr8.2:10706419-10706438 MS.gene26816:CDS 45.0%
GGAATTGCGAACTGGTAGTT+GGG + chr8.2:10708796-10708815 None:intergenic 45.0%
GGGAAAGGACACTCTTTGAT+GGG + chr8.2:10708923-10708942 None:intergenic 45.0%
TAAGCTTGCCATTCAATCCC+AGG - chr8.2:10706611-10706630 MS.gene26816:CDS 45.0%
TCGGCAATGGTATCTTGTTG+CGG + chr8.2:10708717-10708736 None:intergenic 45.0%
TGAGCACAGCACCTATGTAT+GGG + chr8.2:10707767-10707786 None:intergenic 45.0%
TGAGCTATGGTATCGCTATG+TGG - chr8.2:10706518-10706537 MS.gene26816:CDS 45.0%
TGCACAATCTTTGCATCCCT+TGG + chr8.2:10706438-10706457 None:intergenic 45.0%
TGGAATTGCGAACTGGTAGT+TGG + chr8.2:10708797-10708816 None:intergenic 45.0%
TTGAGATGCTAAAGAGGGAC+TGG + chr8.2:10707348-10707367 None:intergenic 45.0%
! AATCCTTTTGGCGTTTAGGC+AGG + chr8.2:10708945-10708964 None:intergenic 45.0%
! ATCCTTTTGGCGTTTAGGCA+GGG + chr8.2:10708944-10708963 None:intergenic 45.0%
! CAGCATGCTCTGAATACACT+TGG + chr8.2:10706563-10706582 None:intergenic 45.0%
! GGTTCGACAGACCTTTTGTT+TGG + chr8.2:10708817-10708836 None:intergenic 45.0%
! TTCTCTTCTTGAGACGGGTT+GGG + chr8.2:10708880-10708899 None:intergenic 45.0%
!! GCAAAAGCACTAGGCATAGA+AGG - chr8.2:10707478-10707497 MS.gene26816:intron 45.0%
!! GTTTCAGGTGCTTCTAGAAC+TGG - chr8.2:10708684-10708703 MS.gene26816:intron 45.0%
!! TCAAAGGTGCCTTTGTAGCA+AGG - chr8.2:10707687-10707706 MS.gene26816:intron 45.0%
!! TCTGTTGGCTCTAGCTTTCT+TGG - chr8.2:10706878-10706897 MS.gene26816:intron 45.0%
!! TGCCCATTTGCAAAAGCACT+AGG - chr8.2:10707469-10707488 MS.gene26816:intron 45.0%
!!! AAATTATTTTAAGTTTAAAA+GGG - chr8.2:10708440-10708459 MS.gene26816:intron 5.0%
!!! ACAAATTATTTAAAATTTTA+GGG - chr8.2:10708408-10708427 MS.gene26816:intron 5.0%
!!! TACAAATTATTTAAAATTTT+AGG - chr8.2:10708407-10708426 MS.gene26816:intron 5.0%
AATATTACCTCACGAGGGGG+TGG + chr8.2:10706657-10706676 None:intergenic 50.0%
ATCAATGTGTCCTGATCGGG+TGG + chr8.2:10708769-10708788 None:intergenic 50.0%
ATGCCGCAAAAGTTCAGGGA+CGG - chr8.2:10707804-10707823 MS.gene26816:intron 50.0%
ATGCTAAAGAGGGACTGGAC+TGG + chr8.2:10707343-10707362 None:intergenic 50.0%
ATGGCAGGCAAAGTCTAGCA+GGG + chr8.2:10707642-10707661 None:intergenic 50.0%
ATTTCCACTTCCACCCGATC+AGG - chr8.2:10708756-10708775 MS.gene26816:CDS 50.0%
CCATTGCCGAAGTCTATAGC+AGG - chr8.2:10708727-10708746 MS.gene26816:CDS 50.0%
CCTGCTATAGACTTCGGCAA+TGG + chr8.2:10708730-10708749 None:intergenic 50.0%
CGAGAAGCTGAAGTTGACCT+GGG + chr8.2:10706631-10706650 None:intergenic 50.0%
CGTATCAGGGCTTCTGTTTG+TGG + chr8.2:10707883-10707902 None:intergenic 50.0%
CTTCTCTTCTTGAGACGGGT+TGG + chr8.2:10708881-10708900 None:intergenic 50.0%
GACGGTGGAAGTAGAGGTTT+AGG - chr8.2:10707611-10707630 MS.gene26816:intron 50.0%
GATGCTCCTCCTTGCTACAA+AGG + chr8.2:10707699-10707718 None:intergenic 50.0%
GGCAATGCCGCAAAAGTTCA+GGG - chr8.2:10707800-10707819 MS.gene26816:intron 50.0%
GGGGAAAGGACACTCTTTGA+TGG + chr8.2:10708924-10708943 None:intergenic 50.0%
! AACTTTTGCGGCATTGCCCA+CGG + chr8.2:10707798-10707817 None:intergenic 50.0%
! AAGGTGCCTTTGTAGCAAGG+AGG - chr8.2:10707690-10707709 MS.gene26816:intron 50.0%
! TCCTTTTGGCGTTTAGGCAG+GGG + chr8.2:10708943-10708962 None:intergenic 50.0%
!! GGGAGGTATTGCCCATACAT+AGG - chr8.2:10707753-10707772 MS.gene26816:intron 50.0%
AGAGTTATAGGCTGCGACGG+TGG - chr8.2:10707596-10707615 MS.gene26816:intron 55.0%
CCAGGCCCTGCTATAGACTT+CGG + chr8.2:10708736-10708755 None:intergenic 55.0%
GATGGCAGGCAAAGTCTAGC+AGG + chr8.2:10707643-10707662 None:intergenic 55.0%
GCGAGAAGCTGAAGTTGACC+TGG + chr8.2:10706632-10706651 None:intergenic 55.0%
GGGCAATGCCGCAAAAGTTC+AGG - chr8.2:10707799-10707818 MS.gene26816:intron 55.0%
TCCCCTGCCTAAACGCCAAA+AGG - chr8.2:10708939-10708958 MS.gene26816:CDS 55.0%
TCGGGTGGAAGTGGAAATCC+AGG + chr8.2:10708754-10708773 None:intergenic 55.0%
TGGCAGGCAAAGTCTAGCAG+GGG + chr8.2:10707641-10707660 None:intergenic 55.0%
TTGGCGTTTAGGCAGGGGAA+AGG + chr8.2:10708938-10708957 None:intergenic 55.0%
!! AAGGAGGAGCATCGACTGTG+TGG - chr8.2:10707706-10707725 MS.gene26816:intron 55.0%
!! AGACGGGTTGGGATCAGCAT+TGG + chr8.2:10708869-10708888 None:intergenic 55.0%
!! AGGAGGAGCATCGACTGTGT+GGG - chr8.2:10707707-10707726 MS.gene26816:intron 55.0%
!! CTGGACTGGCCAAAGGGATA+AGG + chr8.2:10707329-10707348 None:intergenic 55.0%
!! GACGGGTTGGGATCAGCATT+GGG + chr8.2:10708868-10708887 None:intergenic 55.0%
!! GAGCATCGACTGTGTGGGAA+TGG - chr8.2:10707712-10707731 MS.gene26816:intron 55.0%
CCGAAGTCTATAGCAGGGCC+TGG - chr8.2:10708733-10708752 MS.gene26816:CDS 60.0%
GTGTCCTGATCGGGTGGAAG+TGG + chr8.2:10708763-10708782 None:intergenic 60.0%
TGTGCTCATGCCCATGCCGT+GGG - chr8.2:10707779-10707798 MS.gene26816:intron 60.0%
! CGGCCGTCCCTGAACTTTTG+CGG + chr8.2:10707810-10707829 None:intergenic 60.0%
!! AGAGGGACTGGACTGGCCAA+AGG + chr8.2:10707336-10707355 None:intergenic 60.0%
!! GAGGGACTGGACTGGCCAAA+GGG + chr8.2:10707335-10707354 None:intergenic 60.0%
AGGGACGGCCGTAGCTACAC+AGG - chr8.2:10707819-10707838 MS.gene26816:intron 65.0%
CTGTGCTCATGCCCATGCCG+TGG - chr8.2:10707778-10707797 MS.gene26816:intron 65.0%
GGCTGCGACGGTGGAAGTAG+AGG - chr8.2:10707605-10707624 MS.gene26816:intron 65.0%
TGCGGCATTGCCCACGGCAT+GGG + chr8.2:10707792-10707811 None:intergenic 65.0%
TTGCGGCATTGCCCACGGCA+TGG + chr8.2:10707793-10707812 None:intergenic 65.0%
CTCGCAACCACCCCCTCGTG+AGG - chr8.2:10706647-10706666 MS.gene26816:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 10706405 10708966 10706405 ID=MS.gene26816
chr8.2 mRNA 10706405 10708966 10706405 ID=MS.gene26816.t1;Parent=MS.gene26816
chr8.2 exon 10708703 10708966 10708703 ID=MS.gene26816.t1.exon1;Parent=MS.gene26816.t1
chr8.2 CDS 10708703 10708966 10708703 ID=cds.MS.gene26816.t1;Parent=MS.gene26816.t1
chr8.2 exon 10706405 10706680 10706405 ID=MS.gene26816.t1.exon2;Parent=MS.gene26816.t1
chr8.2 CDS 10706405 10706680 10706405 ID=cds.MS.gene26816.t1;Parent=MS.gene26816.t1
Gene Sequence

>MS.gene26816

ATGGCTGATAACGAGGAAGACTCGAATATGCCAAGGGATGCAAAGATTGTGCAGTCTTTGTTGAAATCAATGGGTGTGGAAGAATATGAACCTCGTGTGATAAACAAGTTCCTTGAGCTATGGTATCGCTATGTGGTTGATGTGTTAACAGATGCCCAAGTGTATTCAGAGCATGCTGGCAAGCCTGCAATTGATGTTGATGATGTTAAGCTTGCCATTCAATCCCAGGTCAACTTCAGCTTCTCGCAACCACCCCCTCGTGAGGTAATATTTTTTATAATTCACTGTTTATTAATTTTTGTGCCTGAATTTTAGATTTTGTTTCGCGCCAATCATCAACAAACCCACCAAAGGATTAAATGCATCTATTTTGTTTGTCCTGCGTAGTTGTTACAATTTGTTTATTAAATTATCATGATTGACTAAATGGTGCATATGAAGTTGTGAATTATTGTTGTTATCTTCTTTCCTTTTCTGTTGGCTCTAGCTTTCTTGGTCTCCAACTCTTATAGTAATGCAATTTTTTACTAATGGCATGTAAAAAATTTCATGCATTAATTTTTTAAGATTCACATGTTTGGACTGAGATTGGCATATGACAGAATTATCTCTTAAAATCAAAACTATCTACTCCAAAATAGATAGTTTAGTAACAAATTTTTTCTAACGCGTTTATAGTTTTTTCTTTTTACTAGCTTAAGCTTATGGCGTTTGCATATAAATGTATTTTTTCTCCAAAAAAAAAAAATGCCATGATTACATTTTAATTAAAAATCTATACTAAAATGTACTCCCTCCGGTCAAAGACTCTTTATTCTAGGTTAGCGTAAGCGAGAAAGAAAGCATTCTTCGCTCCATGAAAACAAGTAAGTATATCTTTAGTGAGCAAGAAGAATCGAATGCTCAACACAACAGGATGTACCTTATCCCTTTGGCCAGTCCAGTCCCTCTTTAGCATCTCAAGAATTCGCGCTGTTCATAAAACATAAAAAAAAAAGAGTAGGTGTCTTGGTTTGCACAATTGAAGAATAAAATTAAGGGCTTGTTCTCAGATGCCCATAAATTGCCCATTTGCAAAAGCACTAGGCATAGAAGGAGCTGTTATGAAGAGTTGTGCAAGTGACATTTTCAACTAAAACGATAAATAAGCCAAAAGCGCACTTTAGATATACTATACTATACTCTAGCTTTAGAGTTATAGGCTGCGACGGTGGAAGTAGAGGTTTAGGCTTGCCCCTGCTAGACTTTGCCTGCCATCTTACTAGAAGAAATCTTCCTAGTTTCAAAGGTGCCTTTGTAGCAAGGAGGAGCATCGACTGTGTGGGAATGGTCTCTTGCAAAGAATATAGGGAGGTATTGCCCATACATAGGTGCTGTGCTCATGCCCATGCCGTGGGCAATGCCGCAAAAGTTCAGGGACGGCCGTAGCTACACAGGTTATTCTTTTTTTTTTTTTTTTTTAAGATTACATGCTTCCACAAACAGAAGCCCTGATACGAAATTTATAAGAAACATTTGACTTTTTCGGTTCATTGCATAAATGATGTATTTAGTCTATATTTTAGACAAGATACATTAATTACACAATGAATCTAATAAGTCAACTTTGTCTTATAAATAAGACCGGAGGGAGTAGAGATTAGAAACATGTTACTGATATCCATTTTGTTAGTTACCAGCTCATGAGTTGTAATCAGGAAACATTTGCTAGCTCCTTGTGTGTCATGTAACCCAATACCATATGCTCTTTTTCTTCAGGTTTAATTATTTTGCAGGTCCCTAAACTATTTGTAAATTTTTAAATAGGTCCCTAAACTAAAATAAATTGTAATCAGATCCCTGGGTTTTTTTTTATACAAGCAATTGCCTAAATTTATTAGTAATTGTAATTAGGTCCTTAAACTGAAAAGTTTTTAATTGGTCCTTAAACCTTTTTTTTTTAACAGCGGTCCTTAAACCTTAAAATAGTTTGTAGTGAGCTCCTTGAATTTAGGGACATTAATACAAATTATTTAAAATTTTAGGGATCTAACTGAAATTATTTTAAGTTTAAAAGGGACTTGATTAAAGATTATTTAAAAGTCCAGGGACTAGATTAAGAAAATAGTTCAGGGATCTAATTGAATATTTTTGACAAATATAGGGACTCAATTACAAATATGTTTAATGTAGGAACCTATTTAAGAATCCTCAAATAATTCATGGAACTACAGCACAATTAAATCTTTCTTTAAGCTATAACATGTTAACCTGAAAGATGATATGTTGAATGTAATTGCGTTTCAGGTGCTTCTAGAACTGGCACAAAACCGCAACAAGATACCATTGCCGAAGTCTATAGCAGGGCCTGGATTTCCACTTCCACCCGATCAGGACACATTGATTGCTCCCAACTACCAGTTCGCAATTCCAAACAAAAGGTCTGTCGAACCTATAGAAGAAACCGAGGATGAAGAAGTTCCCAATGCTGATCCCAACCCGTCTCAAGAAGAGAAGACAGATGCGCAACAAAATCCCCATCAAAGAGTGTCCTTTCCCCTGCCTAAACGCCAAAAGGATTGA
Protein sequence

>MS.gene26816.t1

MADNEEDSNMPRDAKIVQSLLKSMGVEEYEPRVINKFLELWYRYVVDVLTDAQVYSEHAGKPAIDVDDVKLAIQSQVNFSFSQPPPREVLLELAQNRNKIPLPKSIAGPGFPLPPDQDTLIAPNYQFAIPNKRSVEPIEETEDEEVPNADPNPSQEEKTDAQQNPHQRVSFPLPKRQKD