Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062713.t1 | XP_013466057.1 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 4.40E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062713.t1 | A0A072VE50 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 3.2e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene062713 | 0.822561 | 2.22E-53 | -1.69E-46 |
| MS.gene049666 | MS.gene062713 | 0.801617 | 8.28E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene062713 | 0.817255 | 3.63E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene062713 | 0.808583 | 2.88E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene062713 | 0.800205 | 1.61E-48 | -1.69E-46 |
| MS.gene050241 | MS.gene062713 | 0.831797 | 1.36E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene062713 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene062713 | 0.816761 | 4.68E-52 | -1.69E-46 |
| MS.gene051594 | MS.gene062713 | 0.81423 | 1.71E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene062713 | 0.843108 | 1.72E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene062713 | 0.839801 | 1.28E-57 | -1.69E-46 |
| MS.gene051744 | MS.gene062713 | 0.830903 | 2.26E-55 | -1.69E-46 |
| MS.gene051957 | MS.gene062713 | 0.812746 | 3.63E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene062713 | 0.815923 | 7.21E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene062713 | 0.83241 | 9.60E-56 | -1.69E-46 |
| MS.gene053597 | MS.gene062713 | 0.816259 | 6.06E-52 | -1.69E-46 |
| MS.gene053599 | MS.gene062713 | 0.849022 | 4.22E-60 | -1.69E-46 |
| MS.gene054584 | MS.gene062713 | 0.822904 | 1.85E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene062713 | 0.804522 | 2.08E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene062713 | 0.807703 | 4.44E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene062713 | 0.817036 | 4.06E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene062713 | -0.820571 | 6.39E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene062713 | 0.809086 | 2.25E-50 | -1.69E-46 |
| MS.gene056005 | MS.gene062713 | 0.809829 | 1.56E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene062713 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene062713 | 0.822518 | 2.27E-53 | -1.69E-46 |
| MS.gene056534 | MS.gene062713 | 0.803038 | 4.22E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene062713 | 0.809329 | 2.00E-50 | -1.69E-46 |
| MS.gene059015 | MS.gene062713 | 0.809046 | 2.30E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene062713 | 0.81535 | 9.67E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene062713 | 0.819823 | 9.48E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062713.t1 | MTR_1g021970 | 99.558 | 226 | 1 | 0 | 1 | 226 | 1 | 226 | 1.09e-167 | 461 |
| MS.gene062713.t1 | MTR_1g021970 | 99.115 | 226 | 1 | 1 | 1 | 226 | 1 | 225 | 3.71e-165 | 454 |
| MS.gene062713.t1 | MTR_3g111670 | 83.190 | 232 | 32 | 4 | 1 | 226 | 1 | 231 | 2.11e-135 | 379 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062713.t1 | AT1G19330 | 76.856 | 229 | 48 | 4 | 1 | 226 | 1 | 227 | 1.03e-110 | 318 |
| MS.gene062713.t1 | AT1G19330 | 71.489 | 235 | 56 | 6 | 1 | 226 | 1 | 233 | 4.62e-109 | 313 |
| MS.gene062713.t1 | AT1G19330 | 75.641 | 234 | 47 | 5 | 1 | 226 | 1 | 232 | 8.61e-109 | 313 |
| MS.gene062713.t1 | AT1G75060 | 69.907 | 216 | 61 | 4 | 11 | 223 | 17 | 231 | 4.84e-100 | 290 |
| MS.gene062713.t1 | AT1G75060 | 69.444 | 216 | 61 | 5 | 11 | 223 | 17 | 230 | 3.52e-98 | 286 |
| MS.gene062713.t1 | AT1G75060 | 69.143 | 175 | 50 | 4 | 11 | 182 | 17 | 190 | 3.71e-73 | 221 |
Find 58 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCAAAGTTGTTGTTAC+TGG | 0.247333 | 1.4:+2469050 | MS.gene062713:CDS |
| GAAGGTTGACTTGAGCAAAT+TGG | 0.273443 | 1.4:+2470392 | MS.gene062713:intron |
| CCTAATGATCTAAGCATTCT+TGG | 0.306623 | 1.4:-2470180 | None:intergenic |
| CATCTGGCATGGATCAGATA+TGG | 0.313436 | 1.4:+2470027 | MS.gene062713:CDS |
| AGCTGCTCTTTCGATGGGTT+TGG | 0.323968 | 1.4:-2470569 | None:intergenic |
| CCAAGAATGCTTAGATCATT+AGG | 0.330483 | 1.4:+2470180 | MS.gene062713:CDS |
| GATGAGTTGCAAGTTATTAG+AGG | 0.336175 | 1.4:+2471106 | MS.gene062713:CDS |
| TTGGTCTTGGTGGTTGGCAT+TGG | 0.389653 | 1.4:+2469129 | MS.gene062713:CDS |
| TCTTGGTGGTTGGCATTGGC+TGG | 0.391104 | 1.4:+2469133 | MS.gene062713:CDS |
| CTCTGTTGATTCACAGTCCA+AGG | 0.394816 | 1.4:+2470233 | MS.gene062713:CDS |
| TGTCTGCATTGTGGAGATAT+TGG | 0.404430 | 1.4:+2470418 | MS.gene062713:CDS |
| TGGAAATAACCGTACTAAAT+CGG | 0.406762 | 1.4:+2469070 | MS.gene062713:CDS |
| TCGGTTCTTGTTGGTCTTCG+TGG | 0.407495 | 1.4:+2469089 | MS.gene062713:CDS |
| TCAAAGCTGCAAAGAGGCTT+AGG | 0.412016 | 1.4:+2471134 | MS.gene062713:CDS |
| GGGGTCAATTTCTATGCCTC+AGG | 0.418506 | 1.4:+2470254 | MS.gene062713:CDS |
| GTTAAGAAAGCTGTTGGTCT+TGG | 0.432909 | 1.4:+2469116 | MS.gene062713:CDS |
| ATTGAAAATGTTGGAAGCAA+TGG | 0.458146 | 1.4:+2468941 | None:intergenic |
| ATTTCCAGTAACAACAACTT+TGG | 0.459498 | 1.4:-2469054 | None:intergenic |
| CGTACTAAATCGGTTCTTGT+TGG | 0.461204 | 1.4:+2469080 | MS.gene062713:CDS |
| AAGAAAGCTGTTGGTCTTGG+TGG | 0.462904 | 1.4:+2469119 | MS.gene062713:CDS |
| CATTCTTGGCCTTGATCTGT+AGG | 0.480531 | 1.4:-2470166 | None:intergenic |
| TTGAATTTGAAAATACCATC+TGG | 0.487944 | 1.4:+2470011 | MS.gene062713:CDS |
| CAGCTTCACTTCAATACCAT+TGG | 0.494520 | 1.4:-2469930 | None:intergenic |
| AGGCATAGAAATTGACCCCT+TGG | 0.495573 | 1.4:-2470250 | None:intergenic |
| CTACGAGCTGCTCTTTCGAT+GGG | 0.498457 | 1.4:-2470574 | None:intergenic |
| GTCATCATCTTCCTCGAGAC+CGG | 0.503122 | 1.4:-2469987 | None:intergenic |
| TCTACGAGCTGCTCTTTCGA+TGG | 0.503645 | 1.4:-2470575 | None:intergenic |
| TCTGTTGATTCACAGTCCAA+GGG | 0.503809 | 1.4:+2470234 | MS.gene062713:CDS |
| CACAAAAGTCCTACAGATCA+AGG | 0.510418 | 1.4:+2470157 | MS.gene062713:CDS |
| ATCTGGCATGGATCAGATAT+GGG | 0.529761 | 1.4:+2470028 | MS.gene062713:CDS |
| TTCTATGCCTCAGGGGTGGA+CGG | 0.534012 | 1.4:+2470263 | MS.gene062713:CDS |
| AGTGTGATTGAACCACCAAC+CGG | 0.537912 | 1.4:+2469968 | MS.gene062713:CDS |
| GATCATTAGGATCATCTCAC+AGG | 0.547105 | 1.4:+2470193 | MS.gene062713:CDS |
| TCAGAGGCATTTCATGTCGC+AGG | 0.548273 | 1.4:+2470604 | MS.gene062713:CDS |
| AAGCTGCAAAGAGGCTTAGG+AGG | 0.549495 | 1.4:+2471137 | MS.gene062713:CDS |
| TTTGAAAATACCATCTGGCA+TGG | 0.557029 | 1.4:+2470016 | MS.gene062713:CDS |
| CAACAAGAACCGATTTAGTA+CGG | 0.559704 | 1.4:-2469079 | None:intergenic |
| TCTTCCTCGAGACCGGTTGG+TGG | 0.561538 | 1.4:-2469980 | None:intergenic |
| ATATTGGCGACACTTCAATC+TGG | 0.569350 | 1.4:+2470434 | MS.gene062713:CDS |
| AAGCTGTTGGTCTTGGTGGT+TGG | 0.570137 | 1.4:+2469123 | MS.gene062713:CDS |
| AATGTGCAGGTTCTTACCAA+TGG | 0.571599 | 1.4:+2469914 | MS.gene062713:intron |
| TCATCTTCCTCGAGACCGGT+TGG | 0.582498 | 1.4:-2469983 | None:intergenic |
| GCAATGGAAAGTTCAGTGAA+TGG | 0.583506 | 1.4:+2468957 | MS.gene062713:CDS |
| GGGTCAATTTCTATGCCTCA+GGG | 0.589986 | 1.4:+2470255 | MS.gene062713:CDS |
| CATATCTGATCCATGCCAGA+TGG | 0.593266 | 1.4:-2470026 | None:intergenic |
| GGTGTTGTTAAGAAAGCTGT+TGG | 0.600631 | 1.4:+2469110 | MS.gene062713:CDS |
| CAATTTCTATGCCTCAGGGG+TGG | 0.610942 | 1.4:+2470259 | MS.gene062713:CDS |
| TGAACCACCAACCGGTCTCG+AGG | 0.615263 | 1.4:+2469976 | MS.gene062713:CDS |
| GTATTGAAGTGAAGCTGCAG+AGG | 0.621922 | 1.4:+2469936 | MS.gene062713:CDS |
| GGACTGTGAATCAACAGAGA+AGG | 0.625537 | 1.4:-2470229 | None:intergenic |
| GATTTGTCAAAGCTGCAAAG+AGG | 0.634961 | 1.4:+2471128 | MS.gene062713:CDS |
| ATGGAAAGTTCAGTGAATGG+TGG | 0.641018 | 1.4:+2468960 | MS.gene062713:CDS |
| AGCTCGTAGATGTTGTTCAG+AGG | 0.657397 | 1.4:+2470588 | MS.gene062713:CDS |
| AATTGGAAATGTCTGCATTG+TGG | 0.659073 | 1.4:+2470409 | MS.gene062713:CDS |
| CTGTTGATTCACAGTCCAAG+GGG | 0.680824 | 1.4:+2470235 | MS.gene062713:CDS |
| ACAACAACTTTGGTATGACG+AGG | 0.693978 | 1.4:-2469044 | None:intergenic |
| ATATATACCGTCCACCCCTG+AGG | 0.713549 | 1.4:-2470270 | None:intergenic |
| GGTCAATTTCTATGCCTCAG+GGG | 0.731555 | 1.4:+2470256 | MS.gene062713:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATACATTTTTAAGTAT+TGG | + | chr1.4:2469380-2469399 | MS.gene062713:intron | 10.0% |
| !!! | AGTTTTTTTCATATTTTATT+TGG | + | chr1.4:2469785-2469804 | MS.gene062713:intron | 10.0% |
| !!! | ATTATACATTTTTAAGTATT+GGG | + | chr1.4:2469381-2469400 | MS.gene062713:intron | 10.0% |
| !!! | CAAAATTAAATATTTTCAAA+TGG | + | chr1.4:2470931-2470950 | MS.gene062713:intron | 10.0% |
| !!! | TGTTTTGAAAAAAAAAAATT+GGG | + | chr1.4:2469408-2469427 | MS.gene062713:intron | 10.0% |
| !!! | TTGTTTTGAAAAAAAAAAAT+TGG | + | chr1.4:2469407-2469426 | MS.gene062713:intron | 10.0% |
| !!! | TTTGAAAATATTTAATTTTG+AGG | - | chr1.4:2470931-2470950 | None:intergenic | 10.0% |
| !! | TACTTAAAAATGTATAATTC+AGG | - | chr1.4:2469379-2469398 | None:intergenic | 15.0% |
| !! | TAGGAAAATTTGAATAAAAT+TGG | - | chr1.4:2469645-2469664 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAATTGGGTTTT+TGG | + | chr1.4:2469415-2469434 | MS.gene062713:intron | 15.0% |
| !!! | ACTATTTTTATCATCAAAAT+TGG | + | chr1.4:2469176-2469195 | MS.gene062713:intron | 15.0% |
| !!! | AGATTTTTACTCTTTAAAAT+AGG | - | chr1.4:2469664-2469683 | None:intergenic | 15.0% |
| !! | AATGGAGCTTAATTTATTTA+TGG | + | chr1.4:2469451-2469470 | MS.gene062713:intron | 20.0% |
| !! | TAAGCTTAAACATCAAAATT+GGG | + | chr1.4:2470527-2470546 | MS.gene062713:intron | 20.0% |
| !! | TTCAATTACTCAATTCATTT+GGG | + | chr1.4:2469348-2469367 | MS.gene062713:intron | 20.0% |
| !!! | ATTCAGTAAATTCTTTTACT+AGG | - | chr1.4:2470907-2470926 | None:intergenic | 20.0% |
| !!! | TTCAGTAAATTCTTTTACTA+GGG | - | chr1.4:2470906-2470925 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTGTAATTTGAA+TGG | + | chr1.4:2469433-2469452 | MS.gene062713:intron | 20.0% |
| ! | CTTCAATTACTCAATTCATT+TGG | + | chr1.4:2469347-2469366 | MS.gene062713:intron | 25.0% |
| ! | GCTTAATTTATTTATGGATC+TGG | + | chr1.4:2469457-2469476 | MS.gene062713:intron | 25.0% |
| ! | GTAAGCTTAAACATCAAAAT+TGG | + | chr1.4:2470526-2470545 | MS.gene062713:intron | 25.0% |
| ! | TATTGAAAATATCGTGTAGA+AGG | + | chr1.4:2470374-2470393 | MS.gene062713:intron | 25.0% |
| ! | TTGAATTTGAAAATACCATC+TGG | + | chr1.4:2470011-2470030 | MS.gene062713:CDS | 25.0% |
| !! | AGATGGTATTTTCAAATTCA+AGG | - | chr1.4:2470012-2470031 | None:intergenic | 25.0% |
| !! | TCAGTAAATTCTTTTACTAG+GGG | - | chr1.4:2470905-2470924 | None:intergenic | 25.0% |
| !!! | GATTTGTTGTGTATTTTGTT+TGG | + | chr1.4:2469503-2469522 | MS.gene062713:intron | 25.0% |
| !!! | GTTATTTGACGTATCTTTTT+TGG | + | chr1.4:2470464-2470483 | MS.gene062713:intron | 25.0% |
| !!! | TGTTTGGTTTTGAATTTTGA+TGG | + | chr1.4:2469519-2469538 | MS.gene062713:intron | 25.0% |
| !!! | TGTTTTGTTTATGAAGCAAA+TGG | + | chr1.4:2471084-2471103 | MS.gene062713:intron | 25.0% |
| !!! | TTTTGAATTTTGATGGTCAA+TGG | + | chr1.4:2469526-2469545 | MS.gene062713:intron | 25.0% |
| ATATGGGTGAGTTTCAATTT+GGG | + | chr1.4:2470044-2470063 | MS.gene062713:intron | 30.0% | |
| ATTTCCAGTAACAACAACTT+TGG | - | chr1.4:2469057-2469076 | None:intergenic | 30.0% | |
| CAACCAAATAACATTGTTAC+AGG | - | chr1.4:2470686-2470705 | None:intergenic | 30.0% | |
| GGTACATTATTGTTTGCATT+AGG | + | chr1.4:2470625-2470644 | MS.gene062713:intron | 30.0% | |
| GTTCCTGTAACAATGTTATT+TGG | + | chr1.4:2470680-2470699 | MS.gene062713:intron | 30.0% | |
| TCATACAATTGTTGCATGTA+TGG | + | chr1.4:2469867-2469886 | MS.gene062713:intron | 30.0% | |
| TGGAAATAACCGTACTAAAT+CGG | + | chr1.4:2469070-2469089 | MS.gene062713:CDS | 30.0% | |
| TTGTTTCATGAAAAATGTGC+AGG | + | chr1.4:2469901-2469920 | MS.gene062713:intron | 30.0% | |
| ! | AGTAAATTCTTTTACTAGGG+GGG | - | chr1.4:2470903-2470922 | None:intergenic | 30.0% |
| ! | CAGTAAATTCTTTTACTAGG+GGG | - | chr1.4:2470904-2470923 | None:intergenic | 30.0% |
| !! | CAACATTTTCAAAGCTTTGT+TGG | + | chr1.4:2468990-2469009 | MS.gene062713:CDS | 30.0% |
| AACATCAAAATTGGGTATGC+AGG | + | chr1.4:2470535-2470554 | MS.gene062713:intron | 35.0% | |
| AATTGGAAATGTCTGCATTG+TGG | + | chr1.4:2470409-2470428 | MS.gene062713:CDS | 35.0% | |
| ATTTGGTTGAACACTGTATG+TGG | + | chr1.4:2470697-2470716 | MS.gene062713:intron | 35.0% | |
| CACAAACAAAATCAGCAATC+GGG | - | chr1.4:2470107-2470126 | None:intergenic | 35.0% | |
| CCAAGAATGCTTAGATCATT+AGG | + | chr1.4:2470180-2470199 | MS.gene062713:CDS | 35.0% | |
| CCTAATGATCTAAGCATTCT+TGG | - | chr1.4:2470183-2470202 | None:intergenic | 35.0% | |
| GATATGGGTGAGTTTCAATT+TGG | + | chr1.4:2470043-2470062 | MS.gene062713:intron | 35.0% | |
| GATGAGTTGCAAGTTATTAG+AGG | + | chr1.4:2471106-2471125 | MS.gene062713:CDS | 35.0% | |
| GCACAAACAAAATCAGCAAT+CGG | - | chr1.4:2470108-2470127 | None:intergenic | 35.0% | |
| TATGTGGTTCCAATCAGATT+TGG | + | chr1.4:2470713-2470732 | MS.gene062713:intron | 35.0% | |
| TTTGAAAATACCATCTGGCA+TGG | + | chr1.4:2470016-2470035 | MS.gene062713:CDS | 35.0% | |
| ! | CAACAAGAACCGATTTAGTA+CGG | - | chr1.4:2469082-2469101 | None:intergenic | 35.0% |
| ! | CATACCAAAGTTGTTGTTAC+TGG | + | chr1.4:2469050-2469069 | MS.gene062713:CDS | 35.0% |
| !! | GATCTTTGCAACTCACTTTT+TGG | + | chr1.4:2469561-2469580 | MS.gene062713:intron | 35.0% |
| !!! | TGCAACTCACTTTTTGGTTT+TGG | + | chr1.4:2469567-2469586 | MS.gene062713:intron | 35.0% |
| AATCAGATTTGGATTCCTCG+TGG | + | chr1.4:2470724-2470743 | MS.gene062713:intron | 40.0% | |
| AATGTGCAGGTTCTTACCAA+TGG | + | chr1.4:2469914-2469933 | MS.gene062713:intron | 40.0% | |
| ACAACAACTTTGGTATGACG+AGG | - | chr1.4:2469047-2469066 | None:intergenic | 40.0% | |
| ACGAGGAATCCAAATCTGAT+TGG | - | chr1.4:2470725-2470744 | None:intergenic | 40.0% | |
| ATATTGGCGACACTTCAATC+TGG | + | chr1.4:2470434-2470453 | MS.gene062713:CDS | 40.0% | |
| ATCAAAATTGGGTATGCAGG+TGG | + | chr1.4:2470538-2470557 | MS.gene062713:intron | 40.0% | |
| ATCTGGCATGGATCAGATAT+GGG | + | chr1.4:2470028-2470047 | MS.gene062713:CDS | 40.0% | |
| ATGGAAAGTTCAGTGAATGG+TGG | + | chr1.4:2468960-2468979 | MS.gene062713:CDS | 40.0% | |
| CACAAAAGTCCTACAGATCA+AGG | + | chr1.4:2470157-2470176 | MS.gene062713:CDS | 40.0% | |
| CAGCAATCGGGAAAATCAAA+AGG | - | chr1.4:2470095-2470114 | None:intergenic | 40.0% | |
| CAGCTTCACTTCAATACCAT+TGG | - | chr1.4:2469933-2469952 | None:intergenic | 40.0% | |
| CATTCACAAAGTCGACACAT+TGG | + | chr1.4:2470761-2470780 | MS.gene062713:intron | 40.0% | |
| GATCATTAGGATCATCTCAC+AGG | + | chr1.4:2470193-2470212 | MS.gene062713:CDS | 40.0% | |
| GATTTGTCAAAGCTGCAAAG+AGG | + | chr1.4:2471128-2471147 | MS.gene062713:CDS | 40.0% | |
| GCAATGGAAAGTTCAGTGAA+TGG | + | chr1.4:2468957-2468976 | MS.gene062713:CDS | 40.0% | |
| TGTCTGCATTGTGGAGATAT+TGG | + | chr1.4:2470418-2470437 | MS.gene062713:CDS | 40.0% | |
| ! | CGTACTAAATCGGTTCTTGT+TGG | + | chr1.4:2469080-2469099 | MS.gene062713:CDS | 40.0% |
| ! | GTTAAGAAAGCTGTTGGTCT+TGG | + | chr1.4:2469116-2469135 | MS.gene062713:CDS | 40.0% |
| !! | GAAGGTTGACTTGAGCAAAT+TGG | + | chr1.4:2470392-2470411 | MS.gene062713:intron | 40.0% |
| !! | GGTGTTGTTAAGAAAGCTGT+TGG | + | chr1.4:2469110-2469129 | MS.gene062713:CDS | 40.0% |
| !! | TCTGTTGATTCACAGTCCAA+GGG | + | chr1.4:2470234-2470253 | MS.gene062713:CDS | 40.0% |
| AGCTCGTAGATGTTGTTCAG+AGG | + | chr1.4:2470588-2470607 | MS.gene062713:CDS | 45.0% | |
| AGGCATAGAAATTGACCCCT+TGG | - | chr1.4:2470253-2470272 | None:intergenic | 45.0% | |
| AGTGTGATTGAACCACCAAC+CGG | + | chr1.4:2469968-2469987 | MS.gene062713:CDS | 45.0% | |
| ATCAGCACATCAGTGATTGC+TGG | - | chr1.4:2470831-2470850 | None:intergenic | 45.0% | |
| CATATCTGATCCATGCCAGA+TGG | - | chr1.4:2470029-2470048 | None:intergenic | 45.0% | |
| CATCTGGCATGGATCAGATA+TGG | + | chr1.4:2470027-2470046 | MS.gene062713:CDS | 45.0% | |
| GCAAAATGCGAGCAAACCAA+AGG | - | chr1.4:2470791-2470810 | None:intergenic | 45.0% | |
| GGACTGTGAATCAACAGAGA+AGG | - | chr1.4:2470232-2470251 | None:intergenic | 45.0% | |
| GGGTCAATTTCTATGCCTCA+GGG | + | chr1.4:2470255-2470274 | MS.gene062713:CDS | 45.0% | |
| GGTCAATTTCTATGCCTCAG+GGG | + | chr1.4:2470256-2470275 | MS.gene062713:CDS | 45.0% | |
| GTATTGAAGTGAAGCTGCAG+AGG | + | chr1.4:2469936-2469955 | MS.gene062713:CDS | 45.0% | |
| TCAAAGCTGCAAAGAGGCTT+AGG | + | chr1.4:2471134-2471153 | MS.gene062713:CDS | 45.0% | |
| TCGACACATTGGTGAACCTT+TGG | + | chr1.4:2470772-2470791 | MS.gene062713:intron | 45.0% | |
| ! | GTGTGTAATTTGTGACCACG+AGG | - | chr1.4:2470742-2470761 | None:intergenic | 45.0% |
| ! | TCTTTTACTAGGGGGGAGAT+TGG | - | chr1.4:2470896-2470915 | None:intergenic | 45.0% |
| !! | AAGAAAGCTGTTGGTCTTGG+TGG | + | chr1.4:2469119-2469138 | MS.gene062713:CDS | 45.0% |
| !! | CATTCTTGGCCTTGATCTGT+AGG | - | chr1.4:2470169-2470188 | None:intergenic | 45.0% |
| !! | CTCTGTTGATTCACAGTCCA+AGG | + | chr1.4:2470233-2470252 | MS.gene062713:CDS | 45.0% |
| !! | CTGTTGATTCACAGTCCAAG+GGG | + | chr1.4:2470235-2470254 | MS.gene062713:CDS | 45.0% |
| !!! | CTTTTTTGGTTGCTGTTGCG+TGG | + | chr1.4:2470500-2470519 | MS.gene062713:intron | 45.0% |
| AAGCTGCAAAGAGGCTTAGG+AGG | + | chr1.4:2471137-2471156 | MS.gene062713:CDS | 50.0% | |
| ATATATACCGTCCACCCCTG+AGG | - | chr1.4:2470273-2470292 | None:intergenic | 50.0% | |
| CAATTTCTATGCCTCAGGGG+TGG | + | chr1.4:2470259-2470278 | MS.gene062713:CDS | 50.0% | |
| CTACGAGCTGCTCTTTCGAT+GGG | - | chr1.4:2470577-2470596 | None:intergenic | 50.0% | |
| CTGCATGAGATTGTGTCTGC+AGG | + | chr1.4:2470855-2470874 | MS.gene062713:intron | 50.0% | |
| GGGGTCAATTTCTATGCCTC+AGG | + | chr1.4:2470254-2470273 | MS.gene062713:CDS | 50.0% | |
| GTCATCATCTTCCTCGAGAC+CGG | - | chr1.4:2469990-2470009 | None:intergenic | 50.0% | |
| TACTAGGGGGGAGATTGGAA+TGG | - | chr1.4:2470891-2470910 | None:intergenic | 50.0% | |
| TCTACGAGCTGCTCTTTCGA+TGG | - | chr1.4:2470578-2470597 | None:intergenic | 50.0% | |
| ! | AGCTGCTCTTTCGATGGGTT+TGG | - | chr1.4:2470572-2470591 | None:intergenic | 50.0% |
| ! | GGGGGAGATTGGAATGGATT+TGG | - | chr1.4:2470885-2470904 | None:intergenic | 50.0% |
| !! | AAGCTGTTGGTCTTGGTGGT+TGG | + | chr1.4:2469123-2469142 | MS.gene062713:CDS | 50.0% |
| !! | TCAGAGGCATTTCATGTCGC+AGG | + | chr1.4:2470604-2470623 | MS.gene062713:CDS | 50.0% |
| !! | TCGGTTCTTGTTGGTCTTCG+TGG | + | chr1.4:2469089-2469108 | MS.gene062713:CDS | 50.0% |
| !! | TTGGTCTTGGTGGTTGGCAT+TGG | + | chr1.4:2469129-2469148 | MS.gene062713:CDS | 50.0% |
| TCATCTTCCTCGAGACCGGT+TGG | - | chr1.4:2469986-2470005 | None:intergenic | 55.0% | |
| TTCTATGCCTCAGGGGTGGA+CGG | + | chr1.4:2470263-2470282 | MS.gene062713:CDS | 55.0% | |
| !! | TCTTGGTGGTTGGCATTGGC+TGG | + | chr1.4:2469133-2469152 | MS.gene062713:CDS | 55.0% |
| TCTTCCTCGAGACCGGTTGG+TGG | - | chr1.4:2469983-2470002 | None:intergenic | 60.0% | |
| TGAACCACCAACCGGTCTCG+AGG | + | chr1.4:2469976-2469995 | MS.gene062713:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2468948 | 2471174 | 2468948 | ID=MS.gene062713 |
| chr1.4 | mRNA | 2468948 | 2471174 | 2468948 | ID=MS.gene062713.t1;Parent=MS.gene062713 |
| chr1.4 | exon | 2468948 | 2469154 | 2468948 | ID=MS.gene062713.t1.exon1;Parent=MS.gene062713.t1 |
| chr1.4 | CDS | 2468948 | 2469154 | 2468948 | ID=cds.MS.gene062713.t1;Parent=MS.gene062713.t1 |
| chr1.4 | exon | 2469923 | 2470049 | 2469923 | ID=MS.gene062713.t1.exon2;Parent=MS.gene062713.t1 |
| chr1.4 | CDS | 2469923 | 2470049 | 2469923 | ID=cds.MS.gene062713.t1;Parent=MS.gene062713.t1 |
| chr1.4 | exon | 2470145 | 2470284 | 2470145 | ID=MS.gene062713.t1.exon3;Parent=MS.gene062713.t1 |
| chr1.4 | CDS | 2470145 | 2470284 | 2470145 | ID=cds.MS.gene062713.t1;Parent=MS.gene062713.t1 |
| chr1.4 | exon | 2470393 | 2470455 | 2470393 | ID=MS.gene062713.t1.exon4;Parent=MS.gene062713.t1 |
| chr1.4 | CDS | 2470393 | 2470455 | 2470393 | ID=cds.MS.gene062713.t1;Parent=MS.gene062713.t1 |
| chr1.4 | exon | 2470557 | 2470625 | 2470557 | ID=MS.gene062713.t1.exon5;Parent=MS.gene062713.t1 |
| chr1.4 | CDS | 2470557 | 2470625 | 2470557 | ID=cds.MS.gene062713.t1;Parent=MS.gene062713.t1 |
| chr1.4 | exon | 2471100 | 2471174 | 2471100 | ID=MS.gene062713.t1.exon6;Parent=MS.gene062713.t1 |
| chr1.4 | CDS | 2471100 | 2471174 | 2471100 | ID=cds.MS.gene062713.t1;Parent=MS.gene062713.t1 |
| Gene Sequence |
| Protein sequence |
