AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063158


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063158.t1 MTR_3g116830 96.471 170 6 0 1 170 1 170 1.12e-109 310
MS.gene063158.t1 MTR_1g054750 27.647 170 88 6 32 167 12 180 7.93e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063158.t1 AT2G21620 76.471 170 39 1 1 170 1 169 1.90e-88 257
MS.gene063158.t1 AT2G21620 73.864 176 39 2 1 170 1 175 8.09e-86 250
MS.gene063158.t1 AT3G62550 28.387 155 87 3 36 167 2 155 9.85e-11 57.8

Find 44 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTGTTCATGCTGCTTC+TGG 0.175140 3.4:-99399049 MS.gene063158:intron
TAAACCTGCAGCTGTGGTTT+TGG 0.252116 3.4:-99396611 MS.gene063158:CDS
CCAGAGCTTGAGAGGGAAAC+AGG 0.303413 3.4:-99399181 MS.gene063158:CDS
GCACCTGTTGTGATCGTTCC+TGG 0.338638 3.4:-99396379 MS.gene063158:CDS
TCAAAAGCATGTTTACTGTT+TGG 0.339328 3.4:+99399112 None:intergenic
AGCTCTGGCTCAGGCACTAT+TGG 0.369995 3.4:+99399196 None:intergenic
ACTGTTTGGACCATGATCTA+TGG 0.408420 3.4:+99399126 None:intergenic
TTGAAACAAGCTTCTGCCTC+TGG 0.408871 3.4:+99396585 None:intergenic
GAAACAGGGGAGAGGAGAAG+AGG 0.410536 3.4:-99399166 MS.gene063158:CDS
CAGGGGAGAGGAGAAGAGGA+AGG 0.414721 3.4:-99399162 MS.gene063158:CDS
CGACTTAACCCAGGGATTGA+TGG 0.429955 3.4:-99398858 MS.gene063158:CDS
CTAATTTCTCCATCAATCCC+TGG 0.431733 3.4:+99398849 None:intergenic
CCTGTTTCCCTCTCAAGCTC+TGG 0.443040 3.4:+99399181 None:intergenic
TCCCTCTCAAGCTCTGGCTC+AGG 0.455326 3.4:+99399187 None:intergenic
TTTCCAGGAACGATCACAAC+AGG 0.474556 3.4:+99396376 None:intergenic
GAGGCAGAAGCTTGTTTCAA+AGG 0.482260 3.4:-99396582 MS.gene063158:intron
CGGATAGTGCAAGGTGATGC+AGG 0.488351 3.4:-99396664 MS.gene063158:CDS
CAGAGCTTGAGAGGGAAACA+GGG 0.500796 3.4:-99399180 MS.gene063158:CDS
GTCCCCAAAACCACAGCTGC+AGG 0.501479 3.4:+99396607 None:intergenic
AGGGGAGAGGAGAAGAGGAA+GGG 0.504800 3.4:-99399161 MS.gene063158:CDS
GTTGTGATCGTTCCTGGAAA+AGG 0.523884 3.4:-99396373 None:intergenic
TCCTTCTTCAGTGTGCTACA+AGG 0.530640 3.4:-99396439 MS.gene063158:intron
TAAATTAATGGAGACAGTGA+TGG 0.533156 3.4:-99399269 None:intergenic
TAATTTCTCCATCAATCCCT+GGG 0.538350 3.4:+99398850 None:intergenic
TGCCTGAGCCAGAGCTTGAG+AGG 0.541192 3.4:-99399189 MS.gene063158:CDS
ATAGTATTAGCCATAGATCA+TGG 0.553466 3.4:-99399136 MS.gene063158:CDS
AACAGGTGAAAACAGTAGCT+CGG 0.557174 3.4:-99396684 MS.gene063158:intron
GGCACTATTGGTATCAGAGA+AGG 0.564937 3.4:+99399208 None:intergenic
GAGGATTAAACCTGCAGCTG+TGG 0.569878 3.4:-99396617 MS.gene063158:CDS
GATGGAGAAATTAGCGGCTG+AGG 0.575246 3.4:-99398840 MS.gene063158:CDS
TTGAGAGGGAAACAGGGGAG+AGG 0.595161 3.4:-99399174 MS.gene063158:CDS
AACCAGAAGCAGCATGAACA+AGG 0.600746 3.4:+99399047 None:intergenic
GGGATTGATGGAGAAATTAG+CGG 0.601178 3.4:-99398846 MS.gene063158:CDS
GCCTGAGCCAGAGCTTGAGA+GGG 0.610344 3.4:-99399188 MS.gene063158:CDS
TGCAGGAAAAGTAATTTGCA+AGG 0.617105 3.4:-99396647 MS.gene063158:CDS
AGCAGCATGAACAAGGTGGA+TGG 0.620241 3.4:+99399054 None:intergenic
ACAGTAGCTCGGATAGTGCA+AGG 0.631985 3.4:-99396673 MS.gene063158:CDS
ATTGTGTACGACTTAACCCA+GGG 0.659770 3.4:-99398866 MS.gene063158:CDS
AATTGTGTACGACTTAACCC+AGG 0.666749 3.4:-99398867 MS.gene063158:CDS
AGAGCTTGAGAGGGAAACAG+GGG 0.669601 3.4:-99399179 MS.gene063158:CDS
CAGAAGCAGCATGAACAAGG+TGG 0.682880 3.4:+99399050 None:intergenic
CAACAGGTGCTGCTTTACAG+TGG 0.687014 3.4:+99396392 None:intergenic
AGTGTGCTACAAGGAAGCGT+CGG 0.687872 3.4:-99396430 MS.gene063158:CDS
TAATTTGCAAGGAAGCAGAG+AGG 0.695628 3.4:-99396636 MS.gene063158:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTGTGAATTTATTTTTT+TGG - chr3.4:99398836-99398855 MS.gene063158:CDS 10.0%
!! AAAAAACATATACAGAATAA+TGG + chr3.4:99399176-99399195 None:intergenic 15.0%
!! TCCAATTTGAAAAATTATAT+AGG - chr3.4:99396872-99396891 MS.gene063158:intron 15.0%
!!! AAAACTTATTCTTTTTCAAT+GGG - chr3.4:99398723-99398742 MS.gene063158:intron 15.0%
!!! AATTGAAGTTTTTGTTTTTA+TGG - chr3.4:99396682-99396701 MS.gene063158:CDS 15.0%
!!! TATTACAAGTTGATTTTATA+CGG + chr3.4:99398672-99398691 None:intergenic 15.0%
!!! TCCTATATAATTTTTCAAAT+TGG + chr3.4:99396876-99396895 None:intergenic 15.0%
!!! TGGATTTTTTTATTACTTTA+TGG - chr3.4:99396702-99396721 MS.gene063158:intron 15.0%
!! AAAACTAAAGTAAAAAGAGA+AGG - chr3.4:99397843-99397862 MS.gene063158:intron 20.0%
!! ACATGTAAAAAAAAACAATG+GGG - chr3.4:99398472-99398491 MS.gene063158:intron 20.0%
!! ATATTGATATGGAAAATCTA+CGG - chr3.4:99397892-99397911 MS.gene063158:intron 20.0%
!! CACATGTAAAAAAAAACAAT+GGG - chr3.4:99398471-99398490 MS.gene063158:intron 20.0%
!! GCATATCTTGAAATATTTAA+TGG - chr3.4:99398519-99398538 MS.gene063158:intron 20.0%
!! TAAAATCAACTTGTAATACA+AGG - chr3.4:99398674-99398693 MS.gene063158:intron 20.0%
!! TAGAAAATTTGGTAGAAAAT+AGG + chr3.4:99397257-99397276 None:intergenic 20.0%
!! TATCTTGAAATATTTAATGG+AGG - chr3.4:99398522-99398541 MS.gene063158:intron 20.0%
!! TCACATGTAAAAAAAAACAA+TGG - chr3.4:99398470-99398489 MS.gene063158:intron 20.0%
!! TTCATAAGTAAATAGGAAAT+CGG + chr3.4:99396851-99396870 None:intergenic 20.0%
!!! CAAAACTTATTCTTTTTCAA+TGG - chr3.4:99398722-99398741 MS.gene063158:intron 20.0%
!!! TTCTCTTTTTACTTTAGTTT+TGG + chr3.4:99397844-99397863 None:intergenic 20.0%
! AATTTCAATCTACAAGAACA+AGG + chr3.4:99398236-99398255 None:intergenic 25.0%
! ACAAATTGTGGTTAATGATT+TGG + chr3.4:99396949-99396968 None:intergenic 25.0%
! AGTTTAATAATCAACCATCA+TGG - chr3.4:99398580-99398599 MS.gene063158:intron 25.0%
! ATTGGACTTCATAAGTAAAT+AGG + chr3.4:99396858-99396877 None:intergenic 25.0%
! ATTTCAATCTACAAGAACAA+GGG + chr3.4:99398235-99398254 None:intergenic 25.0%
! CAATAGCATAATTAAGTCAA+GGG - chr3.4:99398497-99398516 MS.gene063158:intron 25.0%
! CATACTAATCATAAGTAGAA+TGG + chr3.4:99398925-99398944 None:intergenic 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr3.4:99397075-99397094 MS.gene063158:intron 25.0%
! GTTCTTGTAGATTGAAATTA+AGG - chr3.4:99398237-99398256 MS.gene063158:intron 25.0%
! TCAATAGCATAATTAAGTCA+AGG - chr3.4:99398496-99398515 MS.gene063158:intron 25.0%
! TTGTAAACAGATTATAGAGA+GGG + chr3.4:99398705-99398724 None:intergenic 25.0%
! TTTGTAAACAGATTATAGAG+AGG + chr3.4:99398706-99398725 None:intergenic 25.0%
!! TCTACCAAATTTTCTACTAT+GGG - chr3.4:99397261-99397280 MS.gene063158:intron 25.0%
!! TTCTACCAAATTTTCTACTA+TGG - chr3.4:99397260-99397279 MS.gene063158:intron 25.0%
!!! CTACTTAGTTTTCATTGATT+TGG + chr3.4:99398056-99398075 None:intergenic 25.0%
!!! GTTTCTCTAATGGTTTTTTT+AGG - chr3.4:99397132-99397151 MS.gene063158:intron 25.0%
AACCATTCGAAAAGATTTAG+AGG + chr3.4:99397115-99397134 None:intergenic 30.0%
AAGGGATTGAATTGAATGTA+AGG + chr3.4:99399108-99399127 None:intergenic 30.0%
AAGTAAAAAGAGAAGGACTT+AGG - chr3.4:99397850-99397869 MS.gene063158:intron 30.0%
AGTAAAAAGAGAAGGACTTA+GGG - chr3.4:99397851-99397870 MS.gene063158:intron 30.0%
AGTTATCAATAAATGCTGCA+AGG + chr3.4:99398781-99398800 None:intergenic 30.0%
ATAGTATTAGCCATAGATCA+TGG - chr3.4:99396500-99396519 MS.gene063158:intron 30.0%
ATATCTAAACCGTGTAACTT+GGG - chr3.4:99397581-99397600 MS.gene063158:intron 30.0%
GAGAAAAGTTAAGAAAGTGA+AGG + chr3.4:99396623-99396642 None:intergenic 30.0%
GAGGTCAAAGATACTAATTA+CGG - chr3.4:99398541-99398560 MS.gene063158:intron 30.0%
GATTAGTATGATGTGAAAAC+AGG - chr3.4:99398935-99398954 MS.gene063158:intron 30.0%
GGGGTTATTAATACATGTAA+AGG + chr3.4:99398760-99398779 None:intergenic 30.0%
GTTATCAATAAATGCTGCAA+GGG + chr3.4:99398780-99398799 None:intergenic 30.0%
TAATGAGTGACAAACAATAG+AGG + chr3.4:99398866-99398885 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr3.4:99397190-99397209 None:intergenic 30.0%
TTACACGGTTTAGATATCTT+GGG + chr3.4:99397578-99397597 None:intergenic 30.0%
TTATCAATAAATGCTGCAAG+GGG + chr3.4:99398779-99398798 None:intergenic 30.0%
TTCAATCCCTTTCTATATCT+CGG - chr3.4:99399117-99399136 MS.gene063158:CDS 30.0%
TTTCAATCTACAAGAACAAG+GGG + chr3.4:99398234-99398253 None:intergenic 30.0%
! AACTTTTCAACGAGATTATG+AGG + chr3.4:99398297-99398316 None:intergenic 30.0%
! ACAGTAAACATGCTTTTGAT+TGG - chr3.4:99396528-99396547 MS.gene063158:intron 30.0%
! GCAGCATTTATTGATAACTT+TGG - chr3.4:99398782-99398801 MS.gene063158:intron 30.0%
! TCAAAAGCATGTTTACTGTT+TGG + chr3.4:99396527-99396546 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr3.4:99397071-99397090 None:intergenic 30.0%
! TTTTCGAATGGTTTCTCTAA+TGG - chr3.4:99397122-99397141 MS.gene063158:intron 30.0%
!! ATACTAATTACGGTGGATTA+GGG - chr3.4:99398551-99398570 MS.gene063158:intron 30.0%
!! CAGTAAACATGCTTTTGATT+GGG - chr3.4:99396529-99396548 MS.gene063158:intron 30.0%
!! TTCTCCGTCATTTTGTATTA+TGG - chr3.4:99397551-99397570 MS.gene063158:intron 30.0%
!!! AACCAATTTGGTTTTATGCT+TGG + chr3.4:99398100-99398119 None:intergenic 30.0%
!!! ACCAATTTGGTTTTATGCTT+GGG + chr3.4:99398099-99398118 None:intergenic 30.0%
!!! AGTTTTCATTGATTTGGAGA+AGG + chr3.4:99398050-99398069 None:intergenic 30.0%
!!! TTTAGTTTTGGATGTACTGA+CGG + chr3.4:99397832-99397851 None:intergenic 30.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr3.4:99397444-99397463 MS.gene063158:intron 35.0%
AAGAAAAGAGACTCACGTTA+CGG + chr3.4:99398125-99398144 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr3.4:99397187-99397206 None:intergenic 35.0%
ACAACATTGCGCGAATTATA+GGG + chr3.4:99398206-99398225 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr3.4:99397103-99397122 None:intergenic 35.0%
AGCACCCATAGTAGAAAATT+TGG + chr3.4:99397268-99397287 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr3.4:99397440-99397459 None:intergenic 35.0%
ATACCATGAAGTTATGGGAA+AGG + chr3.4:99398165-99398184 None:intergenic 35.0%
ATATCAATATGACTGCACCA+AGG + chr3.4:99397882-99397901 None:intergenic 35.0%
ATATCATACCCCAAGTTACA+CGG + chr3.4:99397593-99397612 None:intergenic 35.0%
CTCATTACTACTCTATTTCC+TGG - chr3.4:99398879-99398898 MS.gene063158:CDS 35.0%
GAGTCATACCATGAAGTTAT+GGG + chr3.4:99398170-99398189 None:intergenic 35.0%
GATATCTAAACCGTGTAACT+TGG - chr3.4:99397580-99397599 MS.gene063158:intron 35.0%
GCTTTCCACAAAATATCTCT+AGG - chr3.4:99398010-99398029 MS.gene063158:intron 35.0%
GGGTCCATAATACAAAATGA+CGG + chr3.4:99397558-99397577 None:intergenic 35.0%
GTCAAAGATACTAATTACGG+TGG - chr3.4:99398544-99398563 MS.gene063158:intron 35.0%
GTTACACGGTTTAGATATCT+TGG + chr3.4:99397579-99397598 None:intergenic 35.0%
TAATTTCTCCATCAATCCCT+GGG + chr3.4:99396789-99396808 None:intergenic 35.0%
TACAACATTGCGCGAATTAT+AGG + chr3.4:99398207-99398226 None:intergenic 35.0%
TACATCATCGTATTCAAGCT+GGG + chr3.4:99397518-99397537 None:intergenic 35.0%
TACCATGAAGTTATGGGAAA+GGG + chr3.4:99398164-99398183 None:intergenic 35.0%
TACTCTATTTCCTGGCAAAT+TGG - chr3.4:99398887-99398906 MS.gene063158:intron 35.0%
TATCAATATGACTGCACCAA+GGG + chr3.4:99397881-99397900 None:intergenic 35.0%
TATCTAAACCGTGTAACTTG+GGG - chr3.4:99397582-99397601 MS.gene063158:intron 35.0%
TCCCAAGCATAAAACCAAAT+TGG - chr3.4:99398095-99398114 MS.gene063158:intron 35.0%
TGAGTCATACCATGAAGTTA+TGG + chr3.4:99398171-99398190 None:intergenic 35.0%
TGATTGACTACCTCCTAAAT+GGG + chr3.4:99396990-99397009 None:intergenic 35.0%
TGGAATGTAACTTCAGCAAA+AGG + chr3.4:99397653-99397672 None:intergenic 35.0%
TTCAATCTACAAGAACAAGG+GGG + chr3.4:99398233-99398252 None:intergenic 35.0%
TTGATCTACTCTTCTTACAG+CGG - chr3.4:99397191-99397210 MS.gene063158:intron 35.0%
TTGATTGACTACCTCCTAAA+TGG + chr3.4:99396991-99397010 None:intergenic 35.0%
TTGGTGCAGTCATATTGATA+TGG - chr3.4:99397881-99397900 MS.gene063158:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr3.4:99397453-99397472 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr3.4:99397091-99397110 None:intergenic 35.0%
! GACCTCTAAATCTTTTCGAA+TGG - chr3.4:99397110-99397129 MS.gene063158:intron 35.0%
! GAGTACCTAGAGATATTTTG+TGG + chr3.4:99398018-99398037 None:intergenic 35.0%
! GATACTAATTACGGTGGATT+AGG - chr3.4:99398550-99398569 MS.gene063158:intron 35.0%
! TCTGCAAAAAGCATACATCT+CGG - chr3.4:99397786-99397805 MS.gene063158:intron 35.0%
! TGCAGGAAAAGTAATTTGCA+AGG - chr3.4:99398989-99399008 MS.gene063158:intron 35.0%
!! ATCCTGGATAGCTCTAATAT+AGG - chr3.4:99397961-99397980 MS.gene063158:intron 35.0%
!! TACTAATTACGGTGGATTAG+GGG - chr3.4:99398552-99398571 MS.gene063158:intron 35.0%
!!! AATTTGGTTTTATGCTTGGG+AGG + chr3.4:99398096-99398115 None:intergenic 35.0%
!!! TTCTTTTTCAATGGGAGACT+TGG - chr3.4:99398731-99398750 MS.gene063158:intron 35.0%
AACAGGTGAAAACAGTAGCT+CGG - chr3.4:99398952-99398971 MS.gene063158:intron 40.0%
AACTTCAGCAAAAGGAGAAG+TGG + chr3.4:99397645-99397664 None:intergenic 40.0%
AATTGTGTACGACTTAACCC+AGG - chr3.4:99396769-99396788 MS.gene063158:intron 40.0%
ACAACATACCTATCGAAGTG+TGG + chr3.4:99398357-99398376 None:intergenic 40.0%
ACCTCCTTGACTATTATCGT+CGG + chr3.4:99398444-99398463 None:intergenic 40.0%
ACTAGTGTGAGGATACAAGA+TGG + chr3.4:99397923-99397942 None:intergenic 40.0%
ACTGTTTGGACCATGATCTA+TGG + chr3.4:99396513-99396532 None:intergenic 40.0%
ACTTCAGCAAAAGGAGAAGT+GGG + chr3.4:99397644-99397663 None:intergenic 40.0%
ACTTCGATAGGTATGTTGTC+CGG - chr3.4:99398358-99398377 MS.gene063158:intron 40.0%
AGAATGGCCGAGATATAGAA+AGG + chr3.4:99399127-99399146 None:intergenic 40.0%
AGACTAGACAGGATAGGATT+AGG + chr3.4:99397320-99397339 None:intergenic 40.0%
AGCTATCCAGGATATGTATG+AGG + chr3.4:99397954-99397973 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr3.4:99397162-99397181 None:intergenic 40.0%
ATCGAAGTGTGGAAAAGTCT+TGG + chr3.4:99398346-99398365 None:intergenic 40.0%
ATGGTAAGACTAGACAGGAT+AGG + chr3.4:99397326-99397345 None:intergenic 40.0%
ATTGTGTACGACTTAACCCA+GGG - chr3.4:99396770-99396789 MS.gene063158:intron 40.0%
CAACATTGCGCGAATTATAG+GGG + chr3.4:99398205-99398224 None:intergenic 40.0%
CACAATTTGTGTCCCATTCA+CGG - chr3.4:99396959-99396978 MS.gene063158:intron 40.0%
CACGTTACGGATAACCAATT+TGG + chr3.4:99398112-99398131 None:intergenic 40.0%
CTAATTTCTCCATCAATCCC+TGG + chr3.4:99396790-99396809 None:intergenic 40.0%
CTAGTGTGAGGATACAAGAT+GGG + chr3.4:99397922-99397941 None:intergenic 40.0%
CTATCCAGGATATGTATGAG+GGG + chr3.4:99397952-99397971 None:intergenic 40.0%
GAAAAGGATGAGTAATGGCA+AGG + chr3.4:99398392-99398411 None:intergenic 40.0%
GAACAACTTGTAAGCCATGA+TGG + chr3.4:99398597-99398616 None:intergenic 40.0%
GAATAGATTGCCAATTTGCC+AGG + chr3.4:99398900-99398919 None:intergenic 40.0%
GAATCCGACGATAATAGTCA+AGG - chr3.4:99398437-99398456 MS.gene063158:intron 40.0%
GAATGGCCGAGATATAGAAA+GGG + chr3.4:99399126-99399145 None:intergenic 40.0%
GATGAATGGTAAGACTAGAC+AGG + chr3.4:99397331-99397350 None:intergenic 40.0%
GCGTTGAAAAGGATGAGTAA+TGG + chr3.4:99398397-99398416 None:intergenic 40.0%
GCTATCCAGGATATGTATGA+GGG + chr3.4:99397953-99397972 None:intergenic 40.0%
GGGATTGATGGAGAAATTAG+CGG - chr3.4:99396790-99396809 MS.gene063158:intron 40.0%
GTACATCATCGTATTCAAGC+TGG + chr3.4:99397519-99397538 None:intergenic 40.0%
TACCCTTTCCCATAACTTCA+TGG - chr3.4:99398159-99398178 MS.gene063158:intron 40.0%
TAGAAGCAAGACGGAGTATA+TGG + chr3.4:99397673-99397692 None:intergenic 40.0%
TAGTGTGAGGATACAAGATG+GGG + chr3.4:99397921-99397940 None:intergenic 40.0%
TATCCAGGATATGTATGAGG+GGG + chr3.4:99397951-99397970 None:intergenic 40.0%
TGACTATTATCGTCGGATTC+AGG + chr3.4:99398437-99398456 None:intergenic 40.0%
TGCCTATATTAGAGCTATCC+AGG + chr3.4:99397966-99397985 None:intergenic 40.0%
TGTGTAGACTCTGTAGAGAA+TGG + chr3.4:99399143-99399162 None:intergenic 40.0%
! AGACTTTTCCACACTTCGAT+AGG - chr3.4:99398346-99398365 MS.gene063158:intron 40.0%
! TAATTTGCAAGGAAGCAGAG+AGG - chr3.4:99399000-99399019 MS.gene063158:intron 40.0%
!! ACTAATTACGGTGGATTAGG+GGG - chr3.4:99398553-99398572 MS.gene063158:intron 40.0%
!! AGGTGAAAGAAGCGTTGAAA+AGG + chr3.4:99398408-99398427 None:intergenic 40.0%
!! GAAAGCACTAGAGAAGAAAG+GGG + chr3.4:99397996-99398015 None:intergenic 40.0%
!! GGAAAGCACTAGAGAAGAAA+GGG + chr3.4:99397997-99398016 None:intergenic 40.0%
!! TGGAAAGCACTAGAGAAGAA+AGG + chr3.4:99397998-99398017 None:intergenic 40.0%
!!! TGAGGCTTTTGAAGTTGCAA+TGG - chr3.4:99396814-99396833 MS.gene063158:intron 40.0%
AAATGGGCAACTCCGTGAAT+GGG + chr3.4:99396974-99396993 None:intergenic 45.0%
AACCAGAAGCAGCATGAACA+AGG + chr3.4:99396592-99396611 None:intergenic 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr3.4:99397293-99397312 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG + chr3.4:99397406-99397425 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr3.4:99397178-99397197 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG + chr3.4:99397515-99397534 None:intergenic 45.0%
ATCTCCAACTTTCACCTCCA+AGG - chr3.4:99397614-99397633 MS.gene063158:intron 45.0%
ATGAGTAATGGCAAGGCAGT+TGG + chr3.4:99398385-99398404 None:intergenic 45.0%
ATTCACGGAGTTGCCCATTT+AGG - chr3.4:99396974-99396993 MS.gene063158:intron 45.0%
CGTGAATGGGACACAAATTG+TGG + chr3.4:99396961-99396980 None:intergenic 45.0%
CTTATCGCACAAAACACCTG+AGG - chr3.4:99397473-99397492 MS.gene063158:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr3.4:99397294-99397313 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr3.4:99397168-99397187 None:intergenic 45.0%
GGCACTATTGGTATCAGAGA+AGG + chr3.4:99396431-99396450 None:intergenic 45.0%
GTAAAGTAAGCGTAGAGCGT+TGG + chr3.4:99397353-99397372 None:intergenic 45.0%
TAAATGGGCAACTCCGTGAA+TGG + chr3.4:99396975-99396994 None:intergenic 45.0%
TATGCTTGGGAGGTCGATTA+TGG + chr3.4:99398086-99398105 None:intergenic 45.0%
TCCGACGATAATAGTCAAGG+AGG - chr3.4:99398440-99398459 MS.gene063158:intron 45.0%
TCCGTACCATACAACATTGC+CGG - chr3.4:99397402-99397421 MS.gene063158:intron 45.0%
TCCTTCTTCAGTGTGCTACA+AGG - chr3.4:99399197-99399216 MS.gene063158:CDS 45.0%
TCCTTGTAGCACACTGAAGA+AGG + chr3.4:99399201-99399220 None:intergenic 45.0%
TCTACCTTGGAGGTGAAAGT+TGG + chr3.4:99397621-99397640 None:intergenic 45.0%
TCTTCTTACAGCGGCATCTA+CGG - chr3.4:99397200-99397219 MS.gene063158:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr3.4:99397295-99397314 None:intergenic 45.0%
TGAGTAATGGCAAGGCAGTT+GGG + chr3.4:99398384-99398403 None:intergenic 45.0%
TGGAAAAGTCTTGGCGATAG+AGG + chr3.4:99398337-99398356 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr3.4:99397398-99397417 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr3.4:99397506-99397525 None:intergenic 45.0%
TTGAAACAAGCTTCTGCCTC+TGG + chr3.4:99399054-99399073 None:intergenic 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + chr3.4:99397492-99397511 None:intergenic 45.0%
TTGGCGATAGAGGAATTGTG+TGG + chr3.4:99398327-99398346 None:intergenic 45.0%
TTTCCAGGAACGATCACAAC+AGG + chr3.4:99399263-99399282 None:intergenic 45.0%
! AAACCTGCAGCTGTGGTTTT+GGG - chr3.4:99399026-99399045 MS.gene063158:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr3.4:99397022-99397041 MS.gene063158:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr3.4:99397021-99397040 MS.gene063158:intron 45.0%
! GAGGCAGAAGCTTGTTTCAA+AGG - chr3.4:99399054-99399073 MS.gene063158:CDS 45.0%
! GCAGATGATGTAGTCTTGCT+TGG + chr3.4:99397771-99397790 None:intergenic 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr3.4:99397397-99397416 None:intergenic 45.0%
! TAAACCTGCAGCTGTGGTTT+TGG - chr3.4:99399025-99399044 MS.gene063158:intron 45.0%
! TTGTTCATGCTGCTTCTGGT+TGG - chr3.4:99396591-99396610 MS.gene063158:CDS 45.0%
!! CTAATTACGGTGGATTAGGG+GGG - chr3.4:99398554-99398573 MS.gene063158:intron 45.0%
!! TACATCTCGGTGCTAACTCT+TGG - chr3.4:99397799-99397818 MS.gene063158:intron 45.0%
!! AAAAAAAATAAAAATAAACA+TGG - chr3.4:99396921-99396940 MS.gene063158:intron 5.0%
AAGCCCCCTCATACATATCC+TGG - chr3.4:99397945-99397964 MS.gene063158:intron 50.0%
AAGGACTTAGGGTTGACCCT+TGG - chr3.4:99397862-99397881 MS.gene063158:intron 50.0%
AAGGAGAAGTGGGTCTACCT+TGG + chr3.4:99397634-99397653 None:intergenic 50.0%
ACAGTAGCTCGGATAGTGCA+AGG - chr3.4:99398963-99398982 MS.gene063158:intron 50.0%
ACTAAGTGGGGTCAGCTACA+TGG - chr3.4:99397034-99397053 MS.gene063158:intron 50.0%
ACTCCGTCTTGCTTCTACTC+AGG - chr3.4:99397676-99397695 MS.gene063158:intron 50.0%
AGAGCTTGAGAGGGAAACAG+GGG - chr3.4:99396457-99396476 MS.gene063158:intron 50.0%
AGCAGCATGAACAAGGTGGA+TGG + chr3.4:99396585-99396604 None:intergenic 50.0%
AGTCGAGGGAGGAGTTAAAC+GGG + chr3.4:99397746-99397765 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG + chr3.4:99397035-99397054 None:intergenic 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr3.4:99397292-99397311 None:intergenic 50.0%
CACTAGAGAAGAAAGGGGTG+AGG + chr3.4:99397991-99398010 None:intergenic 50.0%
CAGAAGCAGCATGAACAAGG+TGG + chr3.4:99396589-99396608 None:intergenic 50.0%
CAGAGCTTGAGAGGGAAACA+GGG - chr3.4:99396456-99396475 MS.gene063158:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr3.4:99397023-99397042 None:intergenic 50.0%
CGAAGAAAATGCCAGACGAG+TGG + chr3.4:99398273-99398292 None:intergenic 50.0%
CGACTTAACCCAGGGATTGA+TGG - chr3.4:99396778-99396797 MS.gene063158:intron 50.0%
CTTCTTACAGCGGCATCTAC+GGG - chr3.4:99397201-99397220 MS.gene063158:intron 50.0%
GAGCGTGTGTGTGTGTGTAT+GGG - chr3.4:99399078-99399097 MS.gene063158:CDS 50.0%
GAGGATTAAACCTGCAGCTG+TGG - chr3.4:99399019-99399038 MS.gene063158:intron 50.0%
GAGTCGAGGGAGGAGTTAAA+CGG + chr3.4:99397747-99397766 None:intergenic 50.0%
GATGGAGAAATTAGCGGCTG+AGG - chr3.4:99396796-99396815 MS.gene063158:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG + chr3.4:99397411-99397430 None:intergenic 50.0%
TAAACGGGAGGCTAGAGACT+TGG + chr3.4:99397731-99397750 None:intergenic 50.0%
TACCCCCACTCTCTCTCTAA+TGG - chr3.4:99397287-99397306 MS.gene063158:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG + chr3.4:99397028-99397047 None:intergenic 50.0%
TGAGCGTGTGTGTGTGTGTA+TGG - chr3.4:99399077-99399096 MS.gene063158:CDS 50.0%
TGTAGCTGACCCCACTTAGT+GGG + chr3.4:99397034-99397053 None:intergenic 50.0%
! AGGCAAGCCTTAGAAGCGTA+TGG + chr3.4:99397708-99397727 None:intergenic 50.0%
! AGTCTTGCTTGGTGAGTCGA+GGG + chr3.4:99397760-99397779 None:intergenic 50.0%
! AGTGTGCTACAAGGAAGCGT+CGG - chr3.4:99399206-99399225 MS.gene063158:CDS 50.0%
! CACCTTGTTCATGCTGCTTC+TGG - chr3.4:99396587-99396606 MS.gene063158:CDS 50.0%
! CATGCTGCTTCTGGTTGGTT+GGG - chr3.4:99396596-99396615 MS.gene063158:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr3.4:99397020-99397039 MS.gene063158:intron 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG + chr3.4:99397761-99397780 None:intergenic 50.0%
! TCATGCTGCTTCTGGTTGGT+TGG - chr3.4:99396595-99396614 MS.gene063158:CDS 50.0%
!! AACCTGCAGCTGTGGTTTTG+GGG - chr3.4:99399027-99399046 MS.gene063158:intron 50.0%
!! AGCGTAGAGCGTTGGATGAA+TGG + chr3.4:99397345-99397364 None:intergenic 50.0%
!! CAACAGGTGCTGCTTTACAG+TGG + chr3.4:99399247-99399266 None:intergenic 50.0%
AGGGGAGAGGAGAAGAGGAA+GGG - chr3.4:99396475-99396494 MS.gene063158:intron 55.0%
CACGGAGTTGCCCATTTAGG+AGG - chr3.4:99396977-99396996 MS.gene063158:intron 55.0%
CCAGAGCTTGAGAGGGAAAC+AGG - chr3.4:99396455-99396474 MS.gene063158:intron 55.0%
CCGCCTGAGTAGAAGCAAGA+CGG + chr3.4:99397682-99397701 None:intergenic 55.0%
CCGTCTTGCTTCTACTCAGG+CGG - chr3.4:99397679-99397698 MS.gene063158:intron 55.0%
CCTGTTTCCCTCTCAAGCTC+TGG + chr3.4:99396458-99396477 None:intergenic 55.0%
CGGATAGTGCAAGGTGATGC+AGG - chr3.4:99398972-99398991 MS.gene063158:intron 55.0%
CTATCGGACAGCAGTCAGAC+CGG + chr3.4:99397424-99397443 None:intergenic 55.0%
GAAACAGGGGAGAGGAGAAG+AGG - chr3.4:99396470-99396489 MS.gene063158:intron 55.0%
GAGAAGTGGGTCTACCTTGG+AGG + chr3.4:99397631-99397650 None:intergenic 55.0%
GCACCTGTTGTGATCGTTCC+TGG - chr3.4:99399257-99399276 MS.gene063158:CDS 55.0%
GCGGAAGCCATACGCTTCTA+AGG - chr3.4:99397698-99397717 MS.gene063158:intron 55.0%
GTGCTTCTTCTCCACTCGTC+TGG - chr3.4:99398259-99398278 MS.gene063158:intron 55.0%
TAATGGCAAGGCAGTTGGGC+CGG + chr3.4:99398380-99398399 None:intergenic 55.0%
TTGAGAGGGAAACAGGGGAG+AGG - chr3.4:99396462-99396481 MS.gene063158:intron 55.0%
! AGCTCTGGCTCAGGCACTAT+TGG + chr3.4:99396443-99396462 None:intergenic 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + chr3.4:99397394-99397413 None:intergenic 55.0%
ACGGGAGGCTAGAGACTTGG+AGG + chr3.4:99397728-99397747 None:intergenic 60.0%
AGGGGGCTTCGACTAGTGTG+AGG + chr3.4:99397934-99397953 None:intergenic 60.0%
CAGGGGAGAGGAGAAGAGGA+AGG - chr3.4:99396474-99396493 MS.gene063158:intron 60.0%
CGAGGGAGGAGTTAAACGGG+AGG + chr3.4:99397743-99397762 None:intergenic 60.0%
GCCTGAGCCAGAGCTTGAGA+GGG - chr3.4:99396448-99396467 MS.gene063158:intron 60.0%
GTCCCCAAAACCACAGCTGC+AGG + chr3.4:99399032-99399051 None:intergenic 60.0%
TGCCTGAGCCAGAGCTTGAG+AGG - chr3.4:99396447-99396466 MS.gene063158:intron 60.0%
! CTTGCTTGGTGAGTCGAGGG+AGG + chr3.4:99397757-99397776 None:intergenic 60.0%
! TCCCTCTCAAGCTCTGGCTC+AGG + chr3.4:99396452-99396471 None:intergenic 60.0%
! TCGTCGGATTCAGGAGCACG+AGG + chr3.4:99398428-99398447 None:intergenic 60.0%
!! CGGAGTGTTGGGCGGTTAAG+AGG + chr3.4:99397386-99397405 None:intergenic 60.0%
!!! GCTGTGGTTTTGGGGACCAG+AGG - chr3.4:99399035-99399054 MS.gene063158:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 99396374 99399284 99396374 ID=MS.gene063158
chr3.4 mRNA 99396374 99399284 99396374 ID=MS.gene063158.t1;Parent=MS.gene063158
chr3.4 exon 99399050 99399284 99399050 ID=MS.gene063158.t1.exon1;Parent=MS.gene063158.t1
chr3.4 CDS 99399050 99399284 99399050 ID=cds.MS.gene063158.t1;Parent=MS.gene063158.t1
chr3.4 exon 99398823 99398902 99398823 ID=MS.gene063158.t1.exon2;Parent=MS.gene063158.t1
chr3.4 CDS 99398823 99398902 99398823 ID=cds.MS.gene063158.t1;Parent=MS.gene063158.t1
chr3.4 exon 99396583 99396701 99396583 ID=MS.gene063158.t1.exon3;Parent=MS.gene063158.t1
chr3.4 CDS 99396583 99396701 99396583 ID=cds.MS.gene063158.t1;Parent=MS.gene063158.t1
chr3.4 exon 99396374 99396450 99396374 ID=MS.gene063158.t1.exon4;Parent=MS.gene063158.t1
chr3.4 CDS 99396374 99396450 99396374 ID=cds.MS.gene063158.t1;Parent=MS.gene063158.t1
Gene Sequence

>MS.gene063158

ATGGAGACAGTGATGGAAGATGTAGAAGAATACAACTACAGAGAAGTGAAGCTTCCTTCTCTGATACCAATAGTGCCTGAGCCAGAGCTTGAGAGGGAAACAGGGGAGAGGAGAAGAGGAAGGGATATAGTATTAGCCATAGATCATGGTCCAAACAGTAAACATGCTTTTGATTGGGCTCTTATTCATCTATGCAGACTTGCTGATACCATCCACCTTGTTCATGCTGCTTCTGGTTGGTTGGGTCCTTCACTTTCTTAACTTTTCTCATATATTACTTTTTTAATTTATTTTGTTCAATATAAATTAATTGAAGTTTTTGTTTTTATGGATTTTTTTATTACTTTATGGATATTTATTTTGTTAATGAAATATTTTGCAGATGTGAAGAATCAAATTGTGTACGACTTAACCCAGGGATTGATGGAGAAATTAGCGGCTGAGGCTTTTGAAGTTGCAATGGTTAGTGTCTCTCCGATTTCCTATTTACTTATGAAGTCCAATTTGAAAAATTATATAGGATAGAGTTAGAGTTGTTCAATTTGACAAAAAAAATAAAAATAAACATGGCTCCAAATCATTAACCACAATTTGTGTCCCATTCACGGAGTTGCCCATTTAGGAGGTAGTCAATCAACAACAACAACCAAGCCTTATCCCACTAAGTGGGGTCAGCTACATGGATCAAATGACGCCATAGTGTTCTATCAAAAACCATATTTGGATCCAACTCATTGACCTCTAAATCTTTTCGAATGGTTTCTCTAATGGTTTTTTTAGGTCTTCCTCTACCTCTTTTAACCTGACTCTCCTCCATTTGATCTACTCTTCTTACAGCGGCATCTACGGGTCTTCTCTCTACATGTTCAAACAATCTAAACCTATTTTCTACCAAATTTTCTACTATGGGTGCTACCCCCACTCTCTCTCTAATGGTGTCATTCCTAATCCTATCCTGTCTAGTCTTACCATTCATCCAACGCTCTACGCTTACTTTACTCTCGTGTTGCCTCTTAACCGCCCAACACTCCGTACCATACAACATTGCCGGTCTGACTGCTGTCCGATAGAACTTTCCTTTCAGCTTAAGTGGTACTTTCTTATCGCACAAAACACCTGAGGCTCTTCTCCATTTCAACCACCCAGCTTGAATACGATGATGTACATCAGCTTCTATTTCTCCGTCATTTTGTATTATGGACCCAAGATATCTAAACCGTGTAACTTGGGGTATGATATGATCTCCAACTTTCACCTCCAAGGTAGACCCACTTCTCCTTTTGCTGAAGTTACATTCCATATACTCCGTCTTGCTTCTACTCAGGCGGAAGCCATACGCTTCTAAGGCTTGCCTCCAAGTCTCTAGCCTCCCGTTTAACTCCTCCCTCGACTCACCAAGCAAGACTACATCATCTGCAAAAAGCATACATCTCGGTGCTAACTCTTGGATGTGTTCCGTCAGTACATCCAAAACTAAAGTAAAAAGAGAAGGACTTAGGGTTGACCCTTGGTGCAGTCATATTGATATGGAAAATCTACGGTATCCCCATCTTGTATCCTCACACTAGTCGAAGCCCCCTCATACATATCCTGGATAGCTCTAATATAGGCAATCCTCACCCCTTTCTTCTCTAGTGCTTTCCACAAAATATCTCTAGGTACTCTATCATACGCCTTCTCCAAATCAATGAAAACTAAGTAGATCGCTTCCATAATCGACCTCCCAAGCATAAAACCAAATTGGTTATCCGTAACGTGAGTCTCTTTTCTTAGTCTTCGCTCAATTACCCTTTCCCATAACTTCATGGTATGACTCATTAGCTTAATTCCCCTATAATTCGCGCAATGTTGTATATCCCCCTTGTTCTTGTAGATTGAAATTAAGGTGCTTCTTCTCCACTCGTCTGGCATTTTCTTCGTCCTCATAATCTCGTTGAAAAGTTTTGTGAGCCACACAATTCCTCTATCGCCAAGACTTTTCCACACTTCGATAGGTATGTTGTCCGGCCCAACTGCCTTGCCATTACTCATCCTTTTCAACGCTTCTTTCACCTCGTGCTCCTGAATCCGACGATAATAGTCAAGGAGGTAGTCAATCACATGTAAAAAAAAACAATGGGGTTCAATAGCATAATTAAGTCAAGGGCATATCTTGAAATATTTAATGGAGGTCAAAGATACTAATTACGGTGGATTAGGGGGGAAAAGTTTAATAATCAACCATCATGGCTTACAAGTTGTTCAGTCACTTCATTTTTTAGATGATTAAGTTTTATATGAAGTCTGACGACTCATCCGTATAAAATCAACTTGTAATACAAGGAATGTCCCTCTCTATAATCTGTTTACAAAACTTATTCTTTTTCAATGGGAGACTTGGAGTCCTTTACATGTATTAATAACCCCTTGCAGCATTTATTGATAACTTTGGTGCTTTATTAGTTGAATATGATGAATGCTAATTATTGTGAATTTATTTTTTTGGTTAACCTCTATTGTTTGTCACTCATTACTACTCTATTTCCTGGCAAATTGGCAATCTATTCTTCCATTCTACTTATGATTAGTATGATGTGAAAACAGGTGAAAACAGTAGCTCGGATAGTGCAAGGTGATGCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATTAAACCTGCAGCTGTGGTTTTGGGGACCAGAGGCAGAAGCTTGTTTCAAAGGTGAGCGTGTGTGTGTGTGTATGGGTGTACCTTACATTCAATTCAATCCCTTTCTATATCTCGGCCATTCTCTACAGAGTCTACACACTGCAGTTATCCATTATTCTGTATATGTTTTTTTTCCTTCTTCAGTGTGCTACAAGGAAGCGTCGGTGAGTATTGCTTTCACCACTGTAAAGCAGCACCTGTTGTGATCGTTCCTGGAAAAG

Protein sequence

>MS.gene063158.t1

METVMEDVEEYNYREVKLPSLIPIVPEPELERETGERRRGRDIVLAIDHGPNSKHAFDWALIHLCRLADTIHLVHAASDVKNQIVYDLTQGLMEKLAAEAFEVAMVKTVARIVQGDAGKVICKEAERIKPAAVVLGTRGRSLFQSVLQGSVGEYCFHHCKAAPVVIVPGK