Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063158.t1 | XP_003603940.1 | 96.5 | 170 | 6 | 0 | 1 | 170 | 1 | 170 | 5.50E-88 | 333.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063158.t1 | B7FMY9 | 96.5 | 170 | 6 | 0 | 1 | 170 | 1 | 170 | 4.0e-88 | 333.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049411 | MS.gene063158 | 0.823692 | 1.21E-53 | -1.69E-46 |
MS.gene050752 | MS.gene063158 | 0.814856 | 1.25E-51 | -1.69E-46 |
MS.gene050838 | MS.gene063158 | 0.811857 | 5.68E-51 | -1.69E-46 |
MS.gene050955 | MS.gene063158 | 0.800013 | 1.76E-48 | -1.69E-46 |
MS.gene051003 | MS.gene063158 | 0.815251 | 1.02E-51 | -1.69E-46 |
MS.gene051234 | MS.gene063158 | 0.826394 | 2.78E-54 | -1.69E-46 |
MS.gene052072 | MS.gene063158 | 0.8014 | 9.17E-49 | -1.69E-46 |
MS.gene053109 | MS.gene063158 | 0.830135 | 3.48E-55 | -1.69E-46 |
MS.gene054403 | MS.gene063158 | 0.812406 | 4.31E-51 | -1.69E-46 |
MS.gene057094 | MS.gene063158 | 0.805842 | 1.10E-49 | -1.69E-46 |
MS.gene057234 | MS.gene063158 | 0.822719 | 2.04E-53 | -1.69E-46 |
MS.gene057999 | MS.gene063158 | 0.80892 | 2.44E-50 | -1.69E-46 |
MS.gene058074 | MS.gene063158 | 0.801961 | 7.03E-49 | -1.69E-46 |
MS.gene059146 | MS.gene063158 | 0.807736 | 4.37E-50 | -1.69E-46 |
MS.gene060763 | MS.gene063158 | 0.839173 | 1.86E-57 | -1.69E-46 |
MS.gene06118 | MS.gene063158 | 0.81298 | 3.23E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063158.t1 | MTR_3g116830 | 96.471 | 170 | 6 | 0 | 1 | 170 | 1 | 170 | 1.12e-109 | 310 |
MS.gene063158.t1 | MTR_1g054750 | 27.647 | 170 | 88 | 6 | 32 | 167 | 12 | 180 | 7.93e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063158.t1 | AT2G21620 | 76.471 | 170 | 39 | 1 | 1 | 170 | 1 | 169 | 1.90e-88 | 257 |
MS.gene063158.t1 | AT2G21620 | 73.864 | 176 | 39 | 2 | 1 | 170 | 1 | 175 | 8.09e-86 | 250 |
MS.gene063158.t1 | AT3G62550 | 28.387 | 155 | 87 | 3 | 36 | 167 | 2 | 155 | 9.85e-11 | 57.8 |
Find 44 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCTTGTTCATGCTGCTTC+TGG | 0.175140 | 3.4:-99399049 | MS.gene063158:intron |
TAAACCTGCAGCTGTGGTTT+TGG | 0.252116 | 3.4:-99396611 | MS.gene063158:CDS |
CCAGAGCTTGAGAGGGAAAC+AGG | 0.303413 | 3.4:-99399181 | MS.gene063158:CDS |
GCACCTGTTGTGATCGTTCC+TGG | 0.338638 | 3.4:-99396379 | MS.gene063158:CDS |
TCAAAAGCATGTTTACTGTT+TGG | 0.339328 | 3.4:+99399112 | None:intergenic |
AGCTCTGGCTCAGGCACTAT+TGG | 0.369995 | 3.4:+99399196 | None:intergenic |
ACTGTTTGGACCATGATCTA+TGG | 0.408420 | 3.4:+99399126 | None:intergenic |
TTGAAACAAGCTTCTGCCTC+TGG | 0.408871 | 3.4:+99396585 | None:intergenic |
GAAACAGGGGAGAGGAGAAG+AGG | 0.410536 | 3.4:-99399166 | MS.gene063158:CDS |
CAGGGGAGAGGAGAAGAGGA+AGG | 0.414721 | 3.4:-99399162 | MS.gene063158:CDS |
CGACTTAACCCAGGGATTGA+TGG | 0.429955 | 3.4:-99398858 | MS.gene063158:CDS |
CTAATTTCTCCATCAATCCC+TGG | 0.431733 | 3.4:+99398849 | None:intergenic |
CCTGTTTCCCTCTCAAGCTC+TGG | 0.443040 | 3.4:+99399181 | None:intergenic |
TCCCTCTCAAGCTCTGGCTC+AGG | 0.455326 | 3.4:+99399187 | None:intergenic |
TTTCCAGGAACGATCACAAC+AGG | 0.474556 | 3.4:+99396376 | None:intergenic |
GAGGCAGAAGCTTGTTTCAA+AGG | 0.482260 | 3.4:-99396582 | MS.gene063158:intron |
CGGATAGTGCAAGGTGATGC+AGG | 0.488351 | 3.4:-99396664 | MS.gene063158:CDS |
CAGAGCTTGAGAGGGAAACA+GGG | 0.500796 | 3.4:-99399180 | MS.gene063158:CDS |
GTCCCCAAAACCACAGCTGC+AGG | 0.501479 | 3.4:+99396607 | None:intergenic |
AGGGGAGAGGAGAAGAGGAA+GGG | 0.504800 | 3.4:-99399161 | MS.gene063158:CDS |
GTTGTGATCGTTCCTGGAAA+AGG | 0.523884 | 3.4:-99396373 | None:intergenic |
TCCTTCTTCAGTGTGCTACA+AGG | 0.530640 | 3.4:-99396439 | MS.gene063158:intron |
TAAATTAATGGAGACAGTGA+TGG | 0.533156 | 3.4:-99399269 | None:intergenic |
TAATTTCTCCATCAATCCCT+GGG | 0.538350 | 3.4:+99398850 | None:intergenic |
TGCCTGAGCCAGAGCTTGAG+AGG | 0.541192 | 3.4:-99399189 | MS.gene063158:CDS |
ATAGTATTAGCCATAGATCA+TGG | 0.553466 | 3.4:-99399136 | MS.gene063158:CDS |
AACAGGTGAAAACAGTAGCT+CGG | 0.557174 | 3.4:-99396684 | MS.gene063158:intron |
GGCACTATTGGTATCAGAGA+AGG | 0.564937 | 3.4:+99399208 | None:intergenic |
GAGGATTAAACCTGCAGCTG+TGG | 0.569878 | 3.4:-99396617 | MS.gene063158:CDS |
GATGGAGAAATTAGCGGCTG+AGG | 0.575246 | 3.4:-99398840 | MS.gene063158:CDS |
TTGAGAGGGAAACAGGGGAG+AGG | 0.595161 | 3.4:-99399174 | MS.gene063158:CDS |
AACCAGAAGCAGCATGAACA+AGG | 0.600746 | 3.4:+99399047 | None:intergenic |
GGGATTGATGGAGAAATTAG+CGG | 0.601178 | 3.4:-99398846 | MS.gene063158:CDS |
GCCTGAGCCAGAGCTTGAGA+GGG | 0.610344 | 3.4:-99399188 | MS.gene063158:CDS |
TGCAGGAAAAGTAATTTGCA+AGG | 0.617105 | 3.4:-99396647 | MS.gene063158:CDS |
AGCAGCATGAACAAGGTGGA+TGG | 0.620241 | 3.4:+99399054 | None:intergenic |
ACAGTAGCTCGGATAGTGCA+AGG | 0.631985 | 3.4:-99396673 | MS.gene063158:CDS |
ATTGTGTACGACTTAACCCA+GGG | 0.659770 | 3.4:-99398866 | MS.gene063158:CDS |
AATTGTGTACGACTTAACCC+AGG | 0.666749 | 3.4:-99398867 | MS.gene063158:CDS |
AGAGCTTGAGAGGGAAACAG+GGG | 0.669601 | 3.4:-99399179 | MS.gene063158:CDS |
CAGAAGCAGCATGAACAAGG+TGG | 0.682880 | 3.4:+99399050 | None:intergenic |
CAACAGGTGCTGCTTTACAG+TGG | 0.687014 | 3.4:+99396392 | None:intergenic |
AGTGTGCTACAAGGAAGCGT+CGG | 0.687872 | 3.4:-99396430 | MS.gene063158:CDS |
TAATTTGCAAGGAAGCAGAG+AGG | 0.695628 | 3.4:-99396636 | MS.gene063158:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTGTGAATTTATTTTTT+TGG | - | chr3.4:99398836-99398855 | MS.gene063158:CDS | 10.0% |
!! | AAAAAACATATACAGAATAA+TGG | + | chr3.4:99399176-99399195 | None:intergenic | 15.0% |
!! | TCCAATTTGAAAAATTATAT+AGG | - | chr3.4:99396872-99396891 | MS.gene063158:intron | 15.0% |
!!! | AAAACTTATTCTTTTTCAAT+GGG | - | chr3.4:99398723-99398742 | MS.gene063158:intron | 15.0% |
!!! | AATTGAAGTTTTTGTTTTTA+TGG | - | chr3.4:99396682-99396701 | MS.gene063158:CDS | 15.0% |
!!! | TATTACAAGTTGATTTTATA+CGG | + | chr3.4:99398672-99398691 | None:intergenic | 15.0% |
!!! | TCCTATATAATTTTTCAAAT+TGG | + | chr3.4:99396876-99396895 | None:intergenic | 15.0% |
!!! | TGGATTTTTTTATTACTTTA+TGG | - | chr3.4:99396702-99396721 | MS.gene063158:intron | 15.0% |
!! | AAAACTAAAGTAAAAAGAGA+AGG | - | chr3.4:99397843-99397862 | MS.gene063158:intron | 20.0% |
!! | ACATGTAAAAAAAAACAATG+GGG | - | chr3.4:99398472-99398491 | MS.gene063158:intron | 20.0% |
!! | ATATTGATATGGAAAATCTA+CGG | - | chr3.4:99397892-99397911 | MS.gene063158:intron | 20.0% |
!! | CACATGTAAAAAAAAACAAT+GGG | - | chr3.4:99398471-99398490 | MS.gene063158:intron | 20.0% |
!! | GCATATCTTGAAATATTTAA+TGG | - | chr3.4:99398519-99398538 | MS.gene063158:intron | 20.0% |
!! | TAAAATCAACTTGTAATACA+AGG | - | chr3.4:99398674-99398693 | MS.gene063158:intron | 20.0% |
!! | TAGAAAATTTGGTAGAAAAT+AGG | + | chr3.4:99397257-99397276 | None:intergenic | 20.0% |
!! | TATCTTGAAATATTTAATGG+AGG | - | chr3.4:99398522-99398541 | MS.gene063158:intron | 20.0% |
!! | TCACATGTAAAAAAAAACAA+TGG | - | chr3.4:99398470-99398489 | MS.gene063158:intron | 20.0% |
!! | TTCATAAGTAAATAGGAAAT+CGG | + | chr3.4:99396851-99396870 | None:intergenic | 20.0% |
!!! | CAAAACTTATTCTTTTTCAA+TGG | - | chr3.4:99398722-99398741 | MS.gene063158:intron | 20.0% |
!!! | TTCTCTTTTTACTTTAGTTT+TGG | + | chr3.4:99397844-99397863 | None:intergenic | 20.0% |
! | AATTTCAATCTACAAGAACA+AGG | + | chr3.4:99398236-99398255 | None:intergenic | 25.0% |
! | ACAAATTGTGGTTAATGATT+TGG | + | chr3.4:99396949-99396968 | None:intergenic | 25.0% |
! | AGTTTAATAATCAACCATCA+TGG | - | chr3.4:99398580-99398599 | MS.gene063158:intron | 25.0% |
! | ATTGGACTTCATAAGTAAAT+AGG | + | chr3.4:99396858-99396877 | None:intergenic | 25.0% |
! | ATTTCAATCTACAAGAACAA+GGG | + | chr3.4:99398235-99398254 | None:intergenic | 25.0% |
! | CAATAGCATAATTAAGTCAA+GGG | - | chr3.4:99398497-99398516 | MS.gene063158:intron | 25.0% |
! | CATACTAATCATAAGTAGAA+TGG | + | chr3.4:99398925-99398944 | None:intergenic | 25.0% |
! | GTTCTATCAAAAACCATATT+TGG | - | chr3.4:99397075-99397094 | MS.gene063158:intron | 25.0% |
! | GTTCTTGTAGATTGAAATTA+AGG | - | chr3.4:99398237-99398256 | MS.gene063158:intron | 25.0% |
! | TCAATAGCATAATTAAGTCA+AGG | - | chr3.4:99398496-99398515 | MS.gene063158:intron | 25.0% |
! | TTGTAAACAGATTATAGAGA+GGG | + | chr3.4:99398705-99398724 | None:intergenic | 25.0% |
! | TTTGTAAACAGATTATAGAG+AGG | + | chr3.4:99398706-99398725 | None:intergenic | 25.0% |
!! | TCTACCAAATTTTCTACTAT+GGG | - | chr3.4:99397261-99397280 | MS.gene063158:intron | 25.0% |
!! | TTCTACCAAATTTTCTACTA+TGG | - | chr3.4:99397260-99397279 | MS.gene063158:intron | 25.0% |
!!! | CTACTTAGTTTTCATTGATT+TGG | + | chr3.4:99398056-99398075 | None:intergenic | 25.0% |
!!! | GTTTCTCTAATGGTTTTTTT+AGG | - | chr3.4:99397132-99397151 | MS.gene063158:intron | 25.0% |
AACCATTCGAAAAGATTTAG+AGG | + | chr3.4:99397115-99397134 | None:intergenic | 30.0% | |
AAGGGATTGAATTGAATGTA+AGG | + | chr3.4:99399108-99399127 | None:intergenic | 30.0% | |
AAGTAAAAAGAGAAGGACTT+AGG | - | chr3.4:99397850-99397869 | MS.gene063158:intron | 30.0% | |
AGTAAAAAGAGAAGGACTTA+GGG | - | chr3.4:99397851-99397870 | MS.gene063158:intron | 30.0% | |
AGTTATCAATAAATGCTGCA+AGG | + | chr3.4:99398781-99398800 | None:intergenic | 30.0% | |
ATAGTATTAGCCATAGATCA+TGG | - | chr3.4:99396500-99396519 | MS.gene063158:intron | 30.0% | |
ATATCTAAACCGTGTAACTT+GGG | - | chr3.4:99397581-99397600 | MS.gene063158:intron | 30.0% | |
GAGAAAAGTTAAGAAAGTGA+AGG | + | chr3.4:99396623-99396642 | None:intergenic | 30.0% | |
GAGGTCAAAGATACTAATTA+CGG | - | chr3.4:99398541-99398560 | MS.gene063158:intron | 30.0% | |
GATTAGTATGATGTGAAAAC+AGG | - | chr3.4:99398935-99398954 | MS.gene063158:intron | 30.0% | |
GGGGTTATTAATACATGTAA+AGG | + | chr3.4:99398760-99398779 | None:intergenic | 30.0% | |
GTTATCAATAAATGCTGCAA+GGG | + | chr3.4:99398780-99398799 | None:intergenic | 30.0% | |
TAATGAGTGACAAACAATAG+AGG | + | chr3.4:99398866-99398885 | None:intergenic | 30.0% | |
TGTAAGAAGAGTAGATCAAA+TGG | + | chr3.4:99397190-99397209 | None:intergenic | 30.0% | |
TTACACGGTTTAGATATCTT+GGG | + | chr3.4:99397578-99397597 | None:intergenic | 30.0% | |
TTATCAATAAATGCTGCAAG+GGG | + | chr3.4:99398779-99398798 | None:intergenic | 30.0% | |
TTCAATCCCTTTCTATATCT+CGG | - | chr3.4:99399117-99399136 | MS.gene063158:CDS | 30.0% | |
TTTCAATCTACAAGAACAAG+GGG | + | chr3.4:99398234-99398253 | None:intergenic | 30.0% | |
! | AACTTTTCAACGAGATTATG+AGG | + | chr3.4:99398297-99398316 | None:intergenic | 30.0% |
! | ACAGTAAACATGCTTTTGAT+TGG | - | chr3.4:99396528-99396547 | MS.gene063158:intron | 30.0% |
! | GCAGCATTTATTGATAACTT+TGG | - | chr3.4:99398782-99398801 | MS.gene063158:intron | 30.0% |
! | TCAAAAGCATGTTTACTGTT+TGG | + | chr3.4:99396527-99396546 | None:intergenic | 30.0% |
! | TGGTTTTTGATAGAACACTA+TGG | + | chr3.4:99397071-99397090 | None:intergenic | 30.0% |
! | TTTTCGAATGGTTTCTCTAA+TGG | - | chr3.4:99397122-99397141 | MS.gene063158:intron | 30.0% |
!! | ATACTAATTACGGTGGATTA+GGG | - | chr3.4:99398551-99398570 | MS.gene063158:intron | 30.0% |
!! | CAGTAAACATGCTTTTGATT+GGG | - | chr3.4:99396529-99396548 | MS.gene063158:intron | 30.0% |
!! | TTCTCCGTCATTTTGTATTA+TGG | - | chr3.4:99397551-99397570 | MS.gene063158:intron | 30.0% |
!!! | AACCAATTTGGTTTTATGCT+TGG | + | chr3.4:99398100-99398119 | None:intergenic | 30.0% |
!!! | ACCAATTTGGTTTTATGCTT+GGG | + | chr3.4:99398099-99398118 | None:intergenic | 30.0% |
!!! | AGTTTTCATTGATTTGGAGA+AGG | + | chr3.4:99398050-99398069 | None:intergenic | 30.0% |
!!! | TTTAGTTTTGGATGTACTGA+CGG | + | chr3.4:99397832-99397851 | None:intergenic | 30.0% |
AACTTTCCTTTCAGCTTAAG+TGG | - | chr3.4:99397444-99397463 | MS.gene063158:intron | 35.0% | |
AAGAAAAGAGACTCACGTTA+CGG | + | chr3.4:99398125-99398144 | None:intergenic | 35.0% | |
AAGAAGAGTAGATCAAATGG+AGG | + | chr3.4:99397187-99397206 | None:intergenic | 35.0% | |
ACAACATTGCGCGAATTATA+GGG | + | chr3.4:99398206-99398225 | None:intergenic | 35.0% | |
AGATTTAGAGGTCAATGAGT+TGG | + | chr3.4:99397103-99397122 | None:intergenic | 35.0% | |
AGCACCCATAGTAGAAAATT+TGG | + | chr3.4:99397268-99397287 | None:intergenic | 35.0% | |
AGCTGAAAGGAAAGTTCTAT+CGG | + | chr3.4:99397440-99397459 | None:intergenic | 35.0% | |
ATACCATGAAGTTATGGGAA+AGG | + | chr3.4:99398165-99398184 | None:intergenic | 35.0% | |
ATATCAATATGACTGCACCA+AGG | + | chr3.4:99397882-99397901 | None:intergenic | 35.0% | |
ATATCATACCCCAAGTTACA+CGG | + | chr3.4:99397593-99397612 | None:intergenic | 35.0% | |
CTCATTACTACTCTATTTCC+TGG | - | chr3.4:99398879-99398898 | MS.gene063158:CDS | 35.0% | |
GAGTCATACCATGAAGTTAT+GGG | + | chr3.4:99398170-99398189 | None:intergenic | 35.0% | |
GATATCTAAACCGTGTAACT+TGG | - | chr3.4:99397580-99397599 | MS.gene063158:intron | 35.0% | |
GCTTTCCACAAAATATCTCT+AGG | - | chr3.4:99398010-99398029 | MS.gene063158:intron | 35.0% | |
GGGTCCATAATACAAAATGA+CGG | + | chr3.4:99397558-99397577 | None:intergenic | 35.0% | |
GTCAAAGATACTAATTACGG+TGG | - | chr3.4:99398544-99398563 | MS.gene063158:intron | 35.0% | |
GTTACACGGTTTAGATATCT+TGG | + | chr3.4:99397579-99397598 | None:intergenic | 35.0% | |
TAATTTCTCCATCAATCCCT+GGG | + | chr3.4:99396789-99396808 | None:intergenic | 35.0% | |
TACAACATTGCGCGAATTAT+AGG | + | chr3.4:99398207-99398226 | None:intergenic | 35.0% | |
TACATCATCGTATTCAAGCT+GGG | + | chr3.4:99397518-99397537 | None:intergenic | 35.0% | |
TACCATGAAGTTATGGGAAA+GGG | + | chr3.4:99398164-99398183 | None:intergenic | 35.0% | |
TACTCTATTTCCTGGCAAAT+TGG | - | chr3.4:99398887-99398906 | MS.gene063158:intron | 35.0% | |
TATCAATATGACTGCACCAA+GGG | + | chr3.4:99397881-99397900 | None:intergenic | 35.0% | |
TATCTAAACCGTGTAACTTG+GGG | - | chr3.4:99397582-99397601 | MS.gene063158:intron | 35.0% | |
TCCCAAGCATAAAACCAAAT+TGG | - | chr3.4:99398095-99398114 | MS.gene063158:intron | 35.0% | |
TGAGTCATACCATGAAGTTA+TGG | + | chr3.4:99398171-99398190 | None:intergenic | 35.0% | |
TGATTGACTACCTCCTAAAT+GGG | + | chr3.4:99396990-99397009 | None:intergenic | 35.0% | |
TGGAATGTAACTTCAGCAAA+AGG | + | chr3.4:99397653-99397672 | None:intergenic | 35.0% | |
TTCAATCTACAAGAACAAGG+GGG | + | chr3.4:99398233-99398252 | None:intergenic | 35.0% | |
TTGATCTACTCTTCTTACAG+CGG | - | chr3.4:99397191-99397210 | MS.gene063158:intron | 35.0% | |
TTGATTGACTACCTCCTAAA+TGG | + | chr3.4:99396991-99397010 | None:intergenic | 35.0% | |
TTGGTGCAGTCATATTGATA+TGG | - | chr3.4:99397881-99397900 | MS.gene063158:intron | 35.0% | |
! | AAAGTACCACTTAAGCTGAA+AGG | + | chr3.4:99397453-99397472 | None:intergenic | 35.0% |
! | CAATGAGTTGGATCCAAATA+TGG | + | chr3.4:99397091-99397110 | None:intergenic | 35.0% |
! | GACCTCTAAATCTTTTCGAA+TGG | - | chr3.4:99397110-99397129 | MS.gene063158:intron | 35.0% |
! | GAGTACCTAGAGATATTTTG+TGG | + | chr3.4:99398018-99398037 | None:intergenic | 35.0% |
! | GATACTAATTACGGTGGATT+AGG | - | chr3.4:99398550-99398569 | MS.gene063158:intron | 35.0% |
! | TCTGCAAAAAGCATACATCT+CGG | - | chr3.4:99397786-99397805 | MS.gene063158:intron | 35.0% |
! | TGCAGGAAAAGTAATTTGCA+AGG | - | chr3.4:99398989-99399008 | MS.gene063158:intron | 35.0% |
!! | ATCCTGGATAGCTCTAATAT+AGG | - | chr3.4:99397961-99397980 | MS.gene063158:intron | 35.0% |
!! | TACTAATTACGGTGGATTAG+GGG | - | chr3.4:99398552-99398571 | MS.gene063158:intron | 35.0% |
!!! | AATTTGGTTTTATGCTTGGG+AGG | + | chr3.4:99398096-99398115 | None:intergenic | 35.0% |
!!! | TTCTTTTTCAATGGGAGACT+TGG | - | chr3.4:99398731-99398750 | MS.gene063158:intron | 35.0% |
AACAGGTGAAAACAGTAGCT+CGG | - | chr3.4:99398952-99398971 | MS.gene063158:intron | 40.0% | |
AACTTCAGCAAAAGGAGAAG+TGG | + | chr3.4:99397645-99397664 | None:intergenic | 40.0% | |
AATTGTGTACGACTTAACCC+AGG | - | chr3.4:99396769-99396788 | MS.gene063158:intron | 40.0% | |
ACAACATACCTATCGAAGTG+TGG | + | chr3.4:99398357-99398376 | None:intergenic | 40.0% | |
ACCTCCTTGACTATTATCGT+CGG | + | chr3.4:99398444-99398463 | None:intergenic | 40.0% | |
ACTAGTGTGAGGATACAAGA+TGG | + | chr3.4:99397923-99397942 | None:intergenic | 40.0% | |
ACTGTTTGGACCATGATCTA+TGG | + | chr3.4:99396513-99396532 | None:intergenic | 40.0% | |
ACTTCAGCAAAAGGAGAAGT+GGG | + | chr3.4:99397644-99397663 | None:intergenic | 40.0% | |
ACTTCGATAGGTATGTTGTC+CGG | - | chr3.4:99398358-99398377 | MS.gene063158:intron | 40.0% | |
AGAATGGCCGAGATATAGAA+AGG | + | chr3.4:99399127-99399146 | None:intergenic | 40.0% | |
AGACTAGACAGGATAGGATT+AGG | + | chr3.4:99397320-99397339 | None:intergenic | 40.0% | |
AGCTATCCAGGATATGTATG+AGG | + | chr3.4:99397954-99397973 | None:intergenic | 40.0% | |
AGTCAGGTTAAAAGAGGTAG+AGG | + | chr3.4:99397162-99397181 | None:intergenic | 40.0% | |
ATCGAAGTGTGGAAAAGTCT+TGG | + | chr3.4:99398346-99398365 | None:intergenic | 40.0% | |
ATGGTAAGACTAGACAGGAT+AGG | + | chr3.4:99397326-99397345 | None:intergenic | 40.0% | |
ATTGTGTACGACTTAACCCA+GGG | - | chr3.4:99396770-99396789 | MS.gene063158:intron | 40.0% | |
CAACATTGCGCGAATTATAG+GGG | + | chr3.4:99398205-99398224 | None:intergenic | 40.0% | |
CACAATTTGTGTCCCATTCA+CGG | - | chr3.4:99396959-99396978 | MS.gene063158:intron | 40.0% | |
CACGTTACGGATAACCAATT+TGG | + | chr3.4:99398112-99398131 | None:intergenic | 40.0% | |
CTAATTTCTCCATCAATCCC+TGG | + | chr3.4:99396790-99396809 | None:intergenic | 40.0% | |
CTAGTGTGAGGATACAAGAT+GGG | + | chr3.4:99397922-99397941 | None:intergenic | 40.0% | |
CTATCCAGGATATGTATGAG+GGG | + | chr3.4:99397952-99397971 | None:intergenic | 40.0% | |
GAAAAGGATGAGTAATGGCA+AGG | + | chr3.4:99398392-99398411 | None:intergenic | 40.0% | |
GAACAACTTGTAAGCCATGA+TGG | + | chr3.4:99398597-99398616 | None:intergenic | 40.0% | |
GAATAGATTGCCAATTTGCC+AGG | + | chr3.4:99398900-99398919 | None:intergenic | 40.0% | |
GAATCCGACGATAATAGTCA+AGG | - | chr3.4:99398437-99398456 | MS.gene063158:intron | 40.0% | |
GAATGGCCGAGATATAGAAA+GGG | + | chr3.4:99399126-99399145 | None:intergenic | 40.0% | |
GATGAATGGTAAGACTAGAC+AGG | + | chr3.4:99397331-99397350 | None:intergenic | 40.0% | |
GCGTTGAAAAGGATGAGTAA+TGG | + | chr3.4:99398397-99398416 | None:intergenic | 40.0% | |
GCTATCCAGGATATGTATGA+GGG | + | chr3.4:99397953-99397972 | None:intergenic | 40.0% | |
GGGATTGATGGAGAAATTAG+CGG | - | chr3.4:99396790-99396809 | MS.gene063158:intron | 40.0% | |
GTACATCATCGTATTCAAGC+TGG | + | chr3.4:99397519-99397538 | None:intergenic | 40.0% | |
TACCCTTTCCCATAACTTCA+TGG | - | chr3.4:99398159-99398178 | MS.gene063158:intron | 40.0% | |
TAGAAGCAAGACGGAGTATA+TGG | + | chr3.4:99397673-99397692 | None:intergenic | 40.0% | |
TAGTGTGAGGATACAAGATG+GGG | + | chr3.4:99397921-99397940 | None:intergenic | 40.0% | |
TATCCAGGATATGTATGAGG+GGG | + | chr3.4:99397951-99397970 | None:intergenic | 40.0% | |
TGACTATTATCGTCGGATTC+AGG | + | chr3.4:99398437-99398456 | None:intergenic | 40.0% | |
TGCCTATATTAGAGCTATCC+AGG | + | chr3.4:99397966-99397985 | None:intergenic | 40.0% | |
TGTGTAGACTCTGTAGAGAA+TGG | + | chr3.4:99399143-99399162 | None:intergenic | 40.0% | |
! | AGACTTTTCCACACTTCGAT+AGG | - | chr3.4:99398346-99398365 | MS.gene063158:intron | 40.0% |
! | TAATTTGCAAGGAAGCAGAG+AGG | - | chr3.4:99399000-99399019 | MS.gene063158:intron | 40.0% |
!! | ACTAATTACGGTGGATTAGG+GGG | - | chr3.4:99398553-99398572 | MS.gene063158:intron | 40.0% |
!! | AGGTGAAAGAAGCGTTGAAA+AGG | + | chr3.4:99398408-99398427 | None:intergenic | 40.0% |
!! | GAAAGCACTAGAGAAGAAAG+GGG | + | chr3.4:99397996-99398015 | None:intergenic | 40.0% |
!! | GGAAAGCACTAGAGAAGAAA+GGG | + | chr3.4:99397997-99398016 | None:intergenic | 40.0% |
!! | TGGAAAGCACTAGAGAAGAA+AGG | + | chr3.4:99397998-99398017 | None:intergenic | 40.0% |
!!! | TGAGGCTTTTGAAGTTGCAA+TGG | - | chr3.4:99396814-99396833 | MS.gene063158:intron | 40.0% |
AAATGGGCAACTCCGTGAAT+GGG | + | chr3.4:99396974-99396993 | None:intergenic | 45.0% | |
AACCAGAAGCAGCATGAACA+AGG | + | chr3.4:99396592-99396611 | None:intergenic | 45.0% | |
ACACCATTAGAGAGAGAGTG+GGG | + | chr3.4:99397293-99397312 | None:intergenic | 45.0% | |
ACCGGCAATGTTGTATGGTA+CGG | + | chr3.4:99397406-99397425 | None:intergenic | 45.0% | |
AGATCAAATGGAGGAGAGTC+AGG | + | chr3.4:99397178-99397197 | None:intergenic | 45.0% | |
ATCATCGTATTCAAGCTGGG+TGG | + | chr3.4:99397515-99397534 | None:intergenic | 45.0% | |
ATCTCCAACTTTCACCTCCA+AGG | - | chr3.4:99397614-99397633 | MS.gene063158:intron | 45.0% | |
ATGAGTAATGGCAAGGCAGT+TGG | + | chr3.4:99398385-99398404 | None:intergenic | 45.0% | |
ATTCACGGAGTTGCCCATTT+AGG | - | chr3.4:99396974-99396993 | MS.gene063158:intron | 45.0% | |
CGTGAATGGGACACAAATTG+TGG | + | chr3.4:99396961-99396980 | None:intergenic | 45.0% | |
CTTATCGCACAAAACACCTG+AGG | - | chr3.4:99397473-99397492 | MS.gene063158:intron | 45.0% | |
GACACCATTAGAGAGAGAGT+GGG | + | chr3.4:99397294-99397313 | None:intergenic | 45.0% | |
GAGGAGAGTCAGGTTAAAAG+AGG | + | chr3.4:99397168-99397187 | None:intergenic | 45.0% | |
GGCACTATTGGTATCAGAGA+AGG | + | chr3.4:99396431-99396450 | None:intergenic | 45.0% | |
GTAAAGTAAGCGTAGAGCGT+TGG | + | chr3.4:99397353-99397372 | None:intergenic | 45.0% | |
TAAATGGGCAACTCCGTGAA+TGG | + | chr3.4:99396975-99396994 | None:intergenic | 45.0% | |
TATGCTTGGGAGGTCGATTA+TGG | + | chr3.4:99398086-99398105 | None:intergenic | 45.0% | |
TCCGACGATAATAGTCAAGG+AGG | - | chr3.4:99398440-99398459 | MS.gene063158:intron | 45.0% | |
TCCGTACCATACAACATTGC+CGG | - | chr3.4:99397402-99397421 | MS.gene063158:intron | 45.0% | |
TCCTTCTTCAGTGTGCTACA+AGG | - | chr3.4:99399197-99399216 | MS.gene063158:CDS | 45.0% | |
TCCTTGTAGCACACTGAAGA+AGG | + | chr3.4:99399201-99399220 | None:intergenic | 45.0% | |
TCTACCTTGGAGGTGAAAGT+TGG | + | chr3.4:99397621-99397640 | None:intergenic | 45.0% | |
TCTTCTTACAGCGGCATCTA+CGG | - | chr3.4:99397200-99397219 | MS.gene063158:intron | 45.0% | |
TGACACCATTAGAGAGAGAG+TGG | + | chr3.4:99397295-99397314 | None:intergenic | 45.0% | |
TGAGTAATGGCAAGGCAGTT+GGG | + | chr3.4:99398384-99398403 | None:intergenic | 45.0% | |
TGGAAAAGTCTTGGCGATAG+AGG | + | chr3.4:99398337-99398356 | None:intergenic | 45.0% | |
TGTTGTATGGTACGGAGTGT+TGG | + | chr3.4:99397398-99397417 | None:intergenic | 45.0% | |
TTCAAGCTGGGTGGTTGAAA+TGG | + | chr3.4:99397506-99397525 | None:intergenic | 45.0% | |
TTGAAACAAGCTTCTGCCTC+TGG | + | chr3.4:99399054-99399073 | None:intergenic | 45.0% | |
TTGAAATGGAGAAGAGCCTC+AGG | + | chr3.4:99397492-99397511 | None:intergenic | 45.0% | |
TTGGCGATAGAGGAATTGTG+TGG | + | chr3.4:99398327-99398346 | None:intergenic | 45.0% | |
TTTCCAGGAACGATCACAAC+AGG | + | chr3.4:99399263-99399282 | None:intergenic | 45.0% | |
! | AAACCTGCAGCTGTGGTTTT+GGG | - | chr3.4:99399026-99399045 | MS.gene063158:intron | 45.0% |
! | AAGCCTTATCCCACTAAGTG+GGG | - | chr3.4:99397022-99397041 | MS.gene063158:intron | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | - | chr3.4:99397021-99397040 | MS.gene063158:intron | 45.0% |
! | GAGGCAGAAGCTTGTTTCAA+AGG | - | chr3.4:99399054-99399073 | MS.gene063158:CDS | 45.0% |
! | GCAGATGATGTAGTCTTGCT+TGG | + | chr3.4:99397771-99397790 | None:intergenic | 45.0% |
! | GTTGTATGGTACGGAGTGTT+GGG | + | chr3.4:99397397-99397416 | None:intergenic | 45.0% |
! | TAAACCTGCAGCTGTGGTTT+TGG | - | chr3.4:99399025-99399044 | MS.gene063158:intron | 45.0% |
! | TTGTTCATGCTGCTTCTGGT+TGG | - | chr3.4:99396591-99396610 | MS.gene063158:CDS | 45.0% |
!! | CTAATTACGGTGGATTAGGG+GGG | - | chr3.4:99398554-99398573 | MS.gene063158:intron | 45.0% |
!! | TACATCTCGGTGCTAACTCT+TGG | - | chr3.4:99397799-99397818 | MS.gene063158:intron | 45.0% |
!! | AAAAAAAATAAAAATAAACA+TGG | - | chr3.4:99396921-99396940 | MS.gene063158:intron | 5.0% |
AAGCCCCCTCATACATATCC+TGG | - | chr3.4:99397945-99397964 | MS.gene063158:intron | 50.0% | |
AAGGACTTAGGGTTGACCCT+TGG | - | chr3.4:99397862-99397881 | MS.gene063158:intron | 50.0% | |
AAGGAGAAGTGGGTCTACCT+TGG | + | chr3.4:99397634-99397653 | None:intergenic | 50.0% | |
ACAGTAGCTCGGATAGTGCA+AGG | - | chr3.4:99398963-99398982 | MS.gene063158:intron | 50.0% | |
ACTAAGTGGGGTCAGCTACA+TGG | - | chr3.4:99397034-99397053 | MS.gene063158:intron | 50.0% | |
ACTCCGTCTTGCTTCTACTC+AGG | - | chr3.4:99397676-99397695 | MS.gene063158:intron | 50.0% | |
AGAGCTTGAGAGGGAAACAG+GGG | - | chr3.4:99396457-99396476 | MS.gene063158:intron | 50.0% | |
AGCAGCATGAACAAGGTGGA+TGG | + | chr3.4:99396585-99396604 | None:intergenic | 50.0% | |
AGTCGAGGGAGGAGTTAAAC+GGG | + | chr3.4:99397746-99397765 | None:intergenic | 50.0% | |
ATGTAGCTGACCCCACTTAG+TGG | + | chr3.4:99397035-99397054 | None:intergenic | 50.0% | |
CACCATTAGAGAGAGAGTGG+GGG | + | chr3.4:99397292-99397311 | None:intergenic | 50.0% | |
CACTAGAGAAGAAAGGGGTG+AGG | + | chr3.4:99397991-99398010 | None:intergenic | 50.0% | |
CAGAAGCAGCATGAACAAGG+TGG | + | chr3.4:99396589-99396608 | None:intergenic | 50.0% | |
CAGAGCTTGAGAGGGAAACA+GGG | - | chr3.4:99396456-99396475 | MS.gene063158:intron | 50.0% | |
CCACTTAGTGGGATAAGGCT+TGG | + | chr3.4:99397023-99397042 | None:intergenic | 50.0% | |
CGAAGAAAATGCCAGACGAG+TGG | + | chr3.4:99398273-99398292 | None:intergenic | 50.0% | |
CGACTTAACCCAGGGATTGA+TGG | - | chr3.4:99396778-99396797 | MS.gene063158:intron | 50.0% | |
CTTCTTACAGCGGCATCTAC+GGG | - | chr3.4:99397201-99397220 | MS.gene063158:intron | 50.0% | |
GAGCGTGTGTGTGTGTGTAT+GGG | - | chr3.4:99399078-99399097 | MS.gene063158:CDS | 50.0% | |
GAGGATTAAACCTGCAGCTG+TGG | - | chr3.4:99399019-99399038 | MS.gene063158:intron | 50.0% | |
GAGTCGAGGGAGGAGTTAAA+CGG | + | chr3.4:99397747-99397766 | None:intergenic | 50.0% | |
GATGGAGAAATTAGCGGCTG+AGG | - | chr3.4:99396796-99396815 | MS.gene063158:intron | 50.0% | |
GTCAGACCGGCAATGTTGTA+TGG | + | chr3.4:99397411-99397430 | None:intergenic | 50.0% | |
TAAACGGGAGGCTAGAGACT+TGG | + | chr3.4:99397731-99397750 | None:intergenic | 50.0% | |
TACCCCCACTCTCTCTCTAA+TGG | - | chr3.4:99397287-99397306 | MS.gene063158:intron | 50.0% | |
TGACCCCACTTAGTGGGATA+AGG | + | chr3.4:99397028-99397047 | None:intergenic | 50.0% | |
TGAGCGTGTGTGTGTGTGTA+TGG | - | chr3.4:99399077-99399096 | MS.gene063158:CDS | 50.0% | |
TGTAGCTGACCCCACTTAGT+GGG | + | chr3.4:99397034-99397053 | None:intergenic | 50.0% | |
! | AGGCAAGCCTTAGAAGCGTA+TGG | + | chr3.4:99397708-99397727 | None:intergenic | 50.0% |
! | AGTCTTGCTTGGTGAGTCGA+GGG | + | chr3.4:99397760-99397779 | None:intergenic | 50.0% |
! | AGTGTGCTACAAGGAAGCGT+CGG | - | chr3.4:99399206-99399225 | MS.gene063158:CDS | 50.0% |
! | CACCTTGTTCATGCTGCTTC+TGG | - | chr3.4:99396587-99396606 | MS.gene063158:CDS | 50.0% |
! | CATGCTGCTTCTGGTTGGTT+GGG | - | chr3.4:99396596-99396615 | MS.gene063158:CDS | 50.0% |
! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3.4:99397020-99397039 | MS.gene063158:intron | 50.0% |
! | TAGTCTTGCTTGGTGAGTCG+AGG | + | chr3.4:99397761-99397780 | None:intergenic | 50.0% |
! | TCATGCTGCTTCTGGTTGGT+TGG | - | chr3.4:99396595-99396614 | MS.gene063158:CDS | 50.0% |
!! | AACCTGCAGCTGTGGTTTTG+GGG | - | chr3.4:99399027-99399046 | MS.gene063158:intron | 50.0% |
!! | AGCGTAGAGCGTTGGATGAA+TGG | + | chr3.4:99397345-99397364 | None:intergenic | 50.0% |
!! | CAACAGGTGCTGCTTTACAG+TGG | + | chr3.4:99399247-99399266 | None:intergenic | 50.0% |
AGGGGAGAGGAGAAGAGGAA+GGG | - | chr3.4:99396475-99396494 | MS.gene063158:intron | 55.0% | |
CACGGAGTTGCCCATTTAGG+AGG | - | chr3.4:99396977-99396996 | MS.gene063158:intron | 55.0% | |
CCAGAGCTTGAGAGGGAAAC+AGG | - | chr3.4:99396455-99396474 | MS.gene063158:intron | 55.0% | |
CCGCCTGAGTAGAAGCAAGA+CGG | + | chr3.4:99397682-99397701 | None:intergenic | 55.0% | |
CCGTCTTGCTTCTACTCAGG+CGG | - | chr3.4:99397679-99397698 | MS.gene063158:intron | 55.0% | |
CCTGTTTCCCTCTCAAGCTC+TGG | + | chr3.4:99396458-99396477 | None:intergenic | 55.0% | |
CGGATAGTGCAAGGTGATGC+AGG | - | chr3.4:99398972-99398991 | MS.gene063158:intron | 55.0% | |
CTATCGGACAGCAGTCAGAC+CGG | + | chr3.4:99397424-99397443 | None:intergenic | 55.0% | |
GAAACAGGGGAGAGGAGAAG+AGG | - | chr3.4:99396470-99396489 | MS.gene063158:intron | 55.0% | |
GAGAAGTGGGTCTACCTTGG+AGG | + | chr3.4:99397631-99397650 | None:intergenic | 55.0% | |
GCACCTGTTGTGATCGTTCC+TGG | - | chr3.4:99399257-99399276 | MS.gene063158:CDS | 55.0% | |
GCGGAAGCCATACGCTTCTA+AGG | - | chr3.4:99397698-99397717 | MS.gene063158:intron | 55.0% | |
GTGCTTCTTCTCCACTCGTC+TGG | - | chr3.4:99398259-99398278 | MS.gene063158:intron | 55.0% | |
TAATGGCAAGGCAGTTGGGC+CGG | + | chr3.4:99398380-99398399 | None:intergenic | 55.0% | |
TTGAGAGGGAAACAGGGGAG+AGG | - | chr3.4:99396462-99396481 | MS.gene063158:intron | 55.0% | |
! | AGCTCTGGCTCAGGCACTAT+TGG | + | chr3.4:99396443-99396462 | None:intergenic | 55.0% |
!! | GTATGGTACGGAGTGTTGGG+CGG | + | chr3.4:99397394-99397413 | None:intergenic | 55.0% |
ACGGGAGGCTAGAGACTTGG+AGG | + | chr3.4:99397728-99397747 | None:intergenic | 60.0% | |
AGGGGGCTTCGACTAGTGTG+AGG | + | chr3.4:99397934-99397953 | None:intergenic | 60.0% | |
CAGGGGAGAGGAGAAGAGGA+AGG | - | chr3.4:99396474-99396493 | MS.gene063158:intron | 60.0% | |
CGAGGGAGGAGTTAAACGGG+AGG | + | chr3.4:99397743-99397762 | None:intergenic | 60.0% | |
GCCTGAGCCAGAGCTTGAGA+GGG | - | chr3.4:99396448-99396467 | MS.gene063158:intron | 60.0% | |
GTCCCCAAAACCACAGCTGC+AGG | + | chr3.4:99399032-99399051 | None:intergenic | 60.0% | |
TGCCTGAGCCAGAGCTTGAG+AGG | - | chr3.4:99396447-99396466 | MS.gene063158:intron | 60.0% | |
! | CTTGCTTGGTGAGTCGAGGG+AGG | + | chr3.4:99397757-99397776 | None:intergenic | 60.0% |
! | TCCCTCTCAAGCTCTGGCTC+AGG | + | chr3.4:99396452-99396471 | None:intergenic | 60.0% |
! | TCGTCGGATTCAGGAGCACG+AGG | + | chr3.4:99398428-99398447 | None:intergenic | 60.0% |
!! | CGGAGTGTTGGGCGGTTAAG+AGG | + | chr3.4:99397386-99397405 | None:intergenic | 60.0% |
!!! | GCTGTGGTTTTGGGGACCAG+AGG | - | chr3.4:99399035-99399054 | MS.gene063158:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 99396374 | 99399284 | 99396374 | ID=MS.gene063158 |
chr3.4 | mRNA | 99396374 | 99399284 | 99396374 | ID=MS.gene063158.t1;Parent=MS.gene063158 |
chr3.4 | exon | 99399050 | 99399284 | 99399050 | ID=MS.gene063158.t1.exon1;Parent=MS.gene063158.t1 |
chr3.4 | CDS | 99399050 | 99399284 | 99399050 | ID=cds.MS.gene063158.t1;Parent=MS.gene063158.t1 |
chr3.4 | exon | 99398823 | 99398902 | 99398823 | ID=MS.gene063158.t1.exon2;Parent=MS.gene063158.t1 |
chr3.4 | CDS | 99398823 | 99398902 | 99398823 | ID=cds.MS.gene063158.t1;Parent=MS.gene063158.t1 |
chr3.4 | exon | 99396583 | 99396701 | 99396583 | ID=MS.gene063158.t1.exon3;Parent=MS.gene063158.t1 |
chr3.4 | CDS | 99396583 | 99396701 | 99396583 | ID=cds.MS.gene063158.t1;Parent=MS.gene063158.t1 |
chr3.4 | exon | 99396374 | 99396450 | 99396374 | ID=MS.gene063158.t1.exon4;Parent=MS.gene063158.t1 |
chr3.4 | CDS | 99396374 | 99396450 | 99396374 | ID=cds.MS.gene063158.t1;Parent=MS.gene063158.t1 |
Gene Sequence |
Protein sequence |