AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06354

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06354.t1 MTR_3g096840 97.723 483 10 1 1 482 1 483 0.0 964
MS.gene06354.t1 MTR_8g094290 68.736 451 141 0 31 481 24 474 0.0 668
MS.gene06354.t1 MTR_3g096830 70.130 462 136 1 19 480 7 466 0.0 658
MS.gene06354.t1 MTR_3g096800 66.180 479 157 2 1 479 1 474 0.0 658
MS.gene06354.t1 MTR_3g088455 60.707 481 180 4 1 478 1 475 0.0 611
MS.gene06354.t1 MTR_4g073520 61.339 463 170 2 28 481 49 511 0.0 606
MS.gene06354.t1 MTR_4g073520 61.339 463 170 2 28 481 49 511 0.0 606
MS.gene06354.t1 MTR_1g029750 61.088 478 180 3 5 478 4 479 0.0 594
MS.gene06354.t1 MTR_3g088475 59.834 483 184 5 1 479 1 477 0.0 594
MS.gene06354.t1 MTR_3g110660 54.430 474 210 4 11 478 5 478 0.0 521
MS.gene06354.t1 MTR_1g007380 53.829 457 206 3 27 478 12 468 1.04e-180 514
MS.gene06354.t1 MTR_1g105980 53.105 467 213 4 20 481 5 470 4.83e-178 508
MS.gene06354.t1 MTR_1g105995 51.282 468 222 4 17 479 1 467 1.90e-174 498
MS.gene06354.t1 MTR_1g105990 53.846 455 202 4 27 473 10 464 7.91e-173 494
MS.gene06354.t1 MTR_1g106000 52.193 456 204 4 37 478 14 469 7.86e-169 484
MS.gene06354.t1 MTR_3g088465 60.513 390 144 5 1 386 1 384 4.20e-166 475
MS.gene06354.t1 MTR_3g461440 51.247 441 210 2 31 468 16 454 8.26e-165 474
MS.gene06354.t1 MTR_3g461470 51.474 441 209 2 31 468 16 454 2.24e-163 470
MS.gene06354.t1 MTR_5g096840 50.459 436 210 3 37 468 28 461 3.70e-159 459
MS.gene06354.t1 MTR_3g061390 50.113 441 215 2 31 468 16 454 1.33e-158 458
MS.gene06354.t1 MTR_3g461430 51.259 437 208 3 35 468 27 461 2.70e-158 459
MS.gene06354.t1 MTR_3g461480 49.115 452 220 4 20 467 9 454 1.71e-150 437
MS.gene06354.t1 MTR_3g110420 47.046 457 237 3 26 478 12 467 2.66e-149 434
MS.gene06354.t1 MTR_1g007270 46.930 456 232 4 26 478 21 469 1.86e-148 432
MS.gene06354.t1 MTR_1g007180 46.018 452 237 4 32 479 6 454 2.92e-147 429
MS.gene06354.t1 MTR_1g007240 46.018 452 237 4 32 479 6 454 7.63e-146 425
MS.gene06354.t1 MTR_2g031750 46.358 453 236 4 31 479 5 454 5.34e-145 423
MS.gene06354.t1 MTR_3g110430 46.154 455 240 3 27 478 50 502 3.18e-134 397
MS.gene06354.t1 MTR_5g096850 43.349 436 241 3 37 468 24 457 9.48e-134 394
MS.gene06354.t1 MTR_3g110660 57.576 330 137 3 19 345 13 342 1.10e-129 381
MS.gene06354.t1 MTR_3g461440 51.572 318 149 2 154 468 2 317 3.50e-117 347
MS.gene06354.t1 MTR_2g031750 43.229 384 211 4 100 479 7 387 1.04e-108 328
MS.gene06354.t1 MTR_5g017200 59.567 277 97 5 6 281 2 264 7.39e-102 306
MS.gene06354.t1 MTR_3g110420 48.571 315 161 1 32 345 18 332 1.21e-100 305
MS.gene06354.t1 MTR_1g007180 42.857 301 165 4 183 479 73 370 2.58e-83 262
MS.gene06354.t1 MTR_6g022790 28.889 450 276 11 38 479 42 455 1.48e-43 160
MS.gene06354.t1 MTR_2g101920 30.120 415 243 12 39 443 48 425 1.05e-42 157
MS.gene06354.t1 MTR_1g007190 42.081 221 91 5 48 268 20 203 3.29e-42 149
MS.gene06354.t1 MTR_8g080120 27.902 448 281 12 39 479 24 436 4.00e-42 155
MS.gene06354.t1 MTR_4g103890 28.989 445 274 10 39 476 11 420 1.46e-40 151
MS.gene06354.t1 MTR_5g054730 30.679 427 250 13 27 445 17 405 6.11e-39 147
MS.gene06354.t1 MTR_1g070470 26.872 454 293 12 32 478 16 437 1.86e-38 145
MS.gene06354.t1 MTR_6g023075 29.821 446 276 10 39 479 15 428 2.75e-35 136
MS.gene06354.t1 MTR_6g022780 29.821 446 276 10 39 479 15 428 6.29e-35 135
MS.gene06354.t1 MTR_7g038910 31.003 329 201 8 39 361 31 339 1.31e-33 130
MS.gene06354.t1 MTR_2g096830 29.372 446 280 8 38 479 14 428 1.43e-33 132
MS.gene06354.t1 MTR_7g038910 30.655 336 193 9 39 361 31 339 1.83e-33 130
MS.gene06354.t1 MTR_6g023065 28.571 469 291 12 20 479 30 463 3.50e-33 131
MS.gene06354.t1 MTR_7g038910 28.194 454 272 11 39 479 31 443 4.62e-33 130
MS.gene06354.t1 MTR_3g005740 28.381 451 279 12 39 479 53 469 7.01e-33 130
MS.gene06354.t1 MTR_1g093020 28.472 432 265 13 27 450 13 408 3.65e-32 127
MS.gene06354.t1 MTR_1g492640 26.608 451 285 17 44 481 64 481 7.32e-32 127
MS.gene06354.t1 MTR_1g093020 28.571 427 261 13 27 445 13 403 9.44e-32 127
MS.gene06354.t1 MTR_4g055610 26.941 438 270 16 20 440 17 421 2.05e-31 126
MS.gene06354.t1 MTR_2g096830 30.278 360 216 8 38 393 14 342 4.67e-31 123
MS.gene06354.t1 MTR_1g093030 27.111 450 284 11 34 475 20 433 3.66e-30 122
MS.gene06354.t1 MTR_3g085820 27.806 392 234 11 26 401 10 368 5.57e-30 120
MS.gene06354.t1 MTR_0531s0020 30.435 322 202 7 38 355 49 352 6.40e-29 117
MS.gene06354.t1 MTR_8g099320 23.899 477 312 16 20 479 6 448 5.10e-26 110
MS.gene06354.t1 MTR_4g075750 24.729 461 295 14 39 477 71 501 4.39e-22 99.4
MS.gene06354.t1 MTR_1g492640 27.187 320 200 13 44 351 46 344 3.29e-21 95.5
MS.gene06354.t1 MTR_1g492640 27.187 320 200 13 44 351 64 362 4.74e-21 95.1
MS.gene06354.t1 MTR_1g492640 26.374 364 225 14 127 479 16 347 6.95e-21 94.4
MS.gene06354.t1 MTR_5g081630 26.128 421 258 16 69 479 4 381 1.74e-19 90.5
MS.gene06354.t1 MTR_3g115090 22.560 461 309 13 26 468 68 498 1.88e-19 91.7
MS.gene06354.t1 MTR_5g023260 23.570 437 286 12 39 459 108 512 1.10e-16 83.2
MS.gene06354.t1 MTR_3g069960 25.061 407 250 15 84 479 72 434 7.13e-15 77.0
MS.gene06354.t1 MTR_3g069960 25.061 407 250 15 84 479 19 381 1.36e-14 75.9
MS.gene06354.t1 MTR_5g023240 23.488 430 280 12 39 452 87 483 2.85e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06354.t1 AT5G09220 65.639 454 152 2 29 478 36 489 0.0 644
MS.gene06354.t1 AT5G63850 63.676 457 162 2 29 481 9 465 0.0 628
MS.gene06354.t1 AT1G77380 65.419 454 154 1 28 478 19 472 0.0 618
MS.gene06354.t1 AT1G44100 61.638 464 167 4 26 479 15 477 0.0 611
MS.gene06354.t1 AT1G10010 52.863 454 210 2 29 478 18 471 0.0 516
MS.gene06354.t1 AT1G10010 52.863 454 210 2 29 478 19 472 0.0 516
MS.gene06354.t1 AT1G58360 53.027 479 214 4 4 478 9 480 4.47e-180 513
MS.gene06354.t1 AT5G49630 54.585 458 202 4 28 479 22 479 1.93e-177 506
MS.gene06354.t1 AT5G23810 46.753 462 236 5 15 468 2 461 4.09e-136 401
MS.gene06354.t1 AT5G23810 47.493 339 173 3 15 350 2 338 4.94e-100 305
MS.gene06354.t1 AT5G23810 44.747 257 137 3 15 268 2 256 2.33e-67 217
MS.gene06354.t1 AT5G23810 43.541 209 115 2 15 220 2 210 7.73e-51 173
MS.gene06354.t1 AT5G23810 43.541 209 115 2 15 220 2 210 7.73e-51 173
MS.gene06354.t1 AT5G40780 28.378 444 284 9 39 479 34 446 3.21e-43 159
MS.gene06354.t1 AT1G48640 28.788 462 291 10 24 479 24 453 2.11e-42 156
MS.gene06354.t1 AT5G40780 28.205 429 274 9 54 479 1 398 1.48e-39 147
MS.gene06354.t1 AT5G40780 28.205 429 274 9 54 479 1 398 1.48e-39 147
MS.gene06354.t1 AT1G24400 29.139 453 269 12 39 479 29 441 4.90e-39 147
MS.gene06354.t1 AT1G67640 29.464 448 274 10 39 479 29 441 1.37e-37 143
MS.gene06354.t1 AT3G01760 26.724 464 303 11 19 474 8 442 1.95e-36 140
MS.gene06354.t1 AT1G71680 29.130 460 289 10 26 479 20 448 7.41e-35 135
MS.gene06354.t1 AT1G61270 28.670 436 267 11 39 465 34 434 8.72e-35 135
MS.gene06354.t1 AT1G71680 31.672 341 210 9 26 360 20 343 3.76e-32 126
MS.gene06354.t1 AT1G25530 28.054 442 269 13 38 467 27 431 2.67e-30 122
MS.gene06354.t1 AT1G08230 25.885 452 298 12 37 479 26 449 2.70e-27 114
MS.gene06354.t1 AT5G41800 24.672 458 295 16 37 479 25 447 2.47e-23 102
MS.gene06354.t1 AT3G55740 25.167 449 279 18 44 479 33 437 6.47e-21 95.5
MS.gene06354.t1 AT3G55740 25.416 421 261 16 69 479 4 381 7.14e-21 94.7
MS.gene06354.t1 AT3G55740 25.416 421 261 16 69 479 4 381 7.14e-21 94.7
MS.gene06354.t1 AT1G08230 28.526 312 199 7 174 479 37 330 2.12e-20 92.4
MS.gene06354.t1 AT1G08230 28.526 312 199 7 174 479 37 330 2.12e-20 92.4
MS.gene06354.t1 AT1G08230 28.526 312 199 7 174 479 37 330 2.12e-20 92.4
MS.gene06354.t1 AT1G08230 28.846 312 198 8 174 479 56 349 2.98e-20 92.4
MS.gene06354.t1 AT2G36590 25.126 398 245 16 44 430 30 385 3.48e-19 90.1
MS.gene06354.t1 AT2G39890 23.142 471 313 17 17 479 11 440 4.29e-19 90.1
MS.gene06354.t1 AT2G39890 23.142 471 313 17 17 479 11 440 4.29e-19 90.1
MS.gene06354.t1 AT2G39890 23.501 417 274 14 69 479 4 381 6.29e-18 85.9
MS.gene06354.t1 AT4G35180 23.077 442 293 10 21 444 30 442 7.53e-12 67.8

Find 106 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAATTCTCTGTCAATTT+TGG 0.067119 3.1:-77271670 None:intergenic
ATCCACTTCCTACTCCATTT+TGG 0.128680 3.1:-77271891 None:intergenic
TGATCGGGGCATTGGGATTT+TGG 0.141359 3.1:+77271817 MS.gene06354:CDS
CGTTGTGGTGACACCGAATT+TGG 0.176572 3.1:+77268893 MS.gene06354:CDS
GCCATCATCGTCATAGTATT+TGG 0.231930 3.1:-77268601 None:intergenic
CTTTCTCGACGAAGGCAAAT+AGG 0.260797 3.1:-77271629 None:intergenic
GCTCAGATGGGTTGGATTGC+TGG 0.293758 3.1:+77268803 MS.gene06354:CDS
ACAGGAAAGTAAACAGTTAA+AGG 0.298387 3.1:-77271840 None:intergenic
AAAACATATTTACGTTAGTT+TGG 0.301907 3.1:+77271724 MS.gene06354:CDS
GGGAACCTGCTCGCCGGATT+TGG 0.301956 3.1:+77271519 MS.gene06354:CDS
TGCATGGGATATGCTGCTTT+TGG 0.316047 3.1:+77271483 MS.gene06354:CDS
GTATCTATTGTGGCTGGTCT+TGG 0.319531 3.1:+77271948 MS.gene06354:CDS
TGGTGTCTCAAAAGCATATT+GGG 0.324806 3.1:+77271539 MS.gene06354:CDS
CTTGGAATTTCCAAAGTTGC+AGG 0.329872 3.1:+77270392 MS.gene06354:CDS
AATAGAAAACGGTACTGTTA+TGG 0.340529 3.1:+77270687 MS.gene06354:intron
GAGTAGGAAGTGGATTATTC+TGG 0.341119 3.1:+77271899 MS.gene06354:CDS
TTTCTCGACGAAGGCAAATA+GGG 0.341560 3.1:-77271628 None:intergenic
ATAGTTTCTCTTTCCAAATT+CGG 0.343023 3.1:-77268906 None:intergenic
AACCCATACATGATAGCTTT+TGG 0.357510 3.1:+77270263 MS.gene06354:CDS
GATGCAGTTAGTAACATTCT+TGG 0.359420 3.1:+77268938 MS.gene06354:CDS
ACGATGATGGCCGTGTTAAA+CGG 0.361196 3.1:+77268613 MS.gene06354:CDS
AAAGAGAAACTATACTTTCA+TGG 0.361574 3.1:+77268916 MS.gene06354:CDS
TGTGGCTGGTCTTGGCTCAT+TGG 0.362801 3.1:+77271956 MS.gene06354:CDS
TCCACAATTGCTCTTGCTCT+TGG 0.363333 3.1:+77270374 MS.gene06354:CDS
TACAAATGAAGATCCCAAAA+TGG 0.364992 3.1:+77271877 MS.gene06354:CDS
TTGGCTCATTGGTCGGTGTC+TGG 0.365007 3.1:+77271967 MS.gene06354:CDS
ACACTTGGTATGCTCCAAAA+AGG 0.366510 3.1:-77271596 None:intergenic
TTTGGGAGTGATCGGGGCAT+TGG 0.370358 3.1:+77271809 MS.gene06354:CDS
AAAGACGCATGTCATATTTC+AGG 0.375996 3.1:+77270239 MS.gene06354:CDS
ATAACAGCTGTGATAGGATC+TGG 0.377729 3.1:+77268755 MS.gene06354:CDS
TTGGGAGTGATCGGGGCATT+GGG 0.379572 3.1:+77271810 MS.gene06354:CDS
CACCACATGTTATGAAAATC+TGG 0.392967 3.1:-77270314 None:intergenic
AGGTATATAACCTGCAACTT+TGG 0.398196 3.1:-77270402 None:intergenic
ACGCCAAAAGCTATCATGTA+TGG 0.400343 3.1:-77270266 None:intergenic
TTGGTGTCTCAAAAGCATAT+TGG 0.403668 3.1:+77271538 MS.gene06354:CDS
ATAGAAAACGGTACTGTTAT+GGG 0.405404 3.1:+77270688 MS.gene06354:intron
AAAGGTGTACCTGAATTTCC+AGG 0.430716 3.1:-77270819 None:intergenic
ATGGGTTGGATTGCTGGTCC+TGG 0.431751 3.1:+77268809 MS.gene06354:CDS
GGTCTATAGCTCAGATGGGT+TGG 0.444852 3.1:+77268795 MS.gene06354:CDS
CTGGGGTGCTCTCCTTAGCC+TGG 0.452285 3.1:+77268774 MS.gene06354:CDS
GGGCCCAGTGTTAAGATTTG+TGG 0.452949 3.1:+77269198 MS.gene06354:CDS
GAAAATCTGGAATTTGAGAA+AGG 0.460822 3.1:-77270301 None:intergenic
AGCCTGGTCTATAGCTCAGA+TGG 0.469391 3.1:+77268790 MS.gene06354:CDS
CTGCCTCATTGTATCTATTG+TGG 0.469595 3.1:+77271938 MS.gene06354:CDS
CTCATTGTATCTATTGTGGC+TGG 0.472707 3.1:+77271942 MS.gene06354:CDS
TTATCTGCTCTGTGGCTGCA+TGG 0.476635 3.1:+77271467 MS.gene06354:CDS
GAATTCAAAGTTAAAATCCC+TGG 0.478084 3.1:+77271684 MS.gene06354:CDS
TTATGTGTCCATACCTCTGA+TGG 0.478499 3.1:+77270215 MS.gene06354:CDS
ACTGTTATGGGTAGCCTCAC+AGG 0.482753 3.1:+77270700 MS.gene06354:CDS
GACGAAGGCAAATAGGGGTT+GGG 0.484362 3.1:-77271622 None:intergenic
AAGATGGTAGAACACTCTTC+CGG 0.487867 3.1:+77268516 None:intergenic
CACATTATAACAGCTGTGAT+AGG 0.489553 3.1:+77268749 MS.gene06354:CDS
GGCCCAGTGTTAAGATTTGT+GGG 0.490344 3.1:+77269199 MS.gene06354:CDS
TCCAAGAGCAAGAGCAATTG+TGG 0.490585 3.1:-77270375 None:intergenic
GTTTAATTCGATAAGCTGAA+TGG 0.491434 3.1:-77272011 None:intergenic
ATTTGCCTTCGTCGAGAAAG+AGG 0.492276 3.1:+77271632 MS.gene06354:CDS
AATCCGGCGAGCAGGTTCCC+TGG 0.492450 3.1:-77271516 None:intergenic
TGAATGGTTTGTATTTCTGC+AGG 0.492604 3.1:-77271995 None:intergenic
ACATATTTACGTTAGTTTGG+AGG 0.492783 3.1:+77271727 MS.gene06354:CDS
CAATATCTCCACGGTAGCTA+AGG 0.493540 3.1:-77268545 None:intergenic
TGCTGCCTCTTTCTCGACGA+AGG 0.495845 3.1:-77271637 None:intergenic
CGACGAAGGCAAATAGGGGT+TGG 0.498834 3.1:-77271623 None:intergenic
TTTAACTGTTTACTTTCCTG+TGG 0.499525 3.1:+77271842 MS.gene06354:CDS
TATCTGCTCTGTGGCTGCAT+GGG 0.499617 3.1:+77271468 MS.gene06354:CDS
AGCTACCGTGGAGATATTGT+TGG 0.499909 3.1:+77268549 MS.gene06354:CDS
TCCCAAAATGGAGTAGGAAG+TGG 0.501131 3.1:+77271889 MS.gene06354:CDS
ACGGTAGCTAAGGTTGGTTC+CGG 0.506142 3.1:-77268535 None:intergenic
AGGCGATGTTTCCAAGACCT+TGG 0.513092 3.1:-77270771 None:intergenic
AGACACCAAATCCGGCGAGC+AGG 0.523063 3.1:-77271524 None:intergenic
TAACAGCTGTGATAGGATCT+GGG 0.524232 3.1:+77268756 MS.gene06354:CDS
TCCAAATACTATGACGATGA+TGG 0.532295 3.1:+77268600 MS.gene06354:CDS
TGACTGTAGACTGGCAAACC+AGG 0.534144 3.1:-77271702 None:intergenic
GCTGGTCTTGGCTCATTGGT+CGG 0.537162 3.1:+77271960 MS.gene06354:CDS
CTCGCTGATTGTTATCGTTG+TGG 0.546122 3.1:+77268878 MS.gene06354:CDS
CGCCAAAAGCTATCATGTAT+GGG 0.549420 3.1:-77270265 None:intergenic
GTGGGAGCATGTAGTCCAAA+CGG 0.556209 3.1:-77268729 None:intergenic
TGGAGATATTGTTGGCATTG+AGG 0.559066 3.1:+77268557 MS.gene06354:CDS
ATAGGGGTTGGGCATACACT+TGG 0.560213 3.1:-77271611 None:intergenic
AATCTGAGTCAGGAACCGTT+TGG 0.563153 3.1:+77268714 MS.gene06354:intron
GCGCCAGGGAACCTGCTCGC+CGG 0.570329 3.1:+77271513 MS.gene06354:CDS
TATCCCACAAATCTTAACAC+TGG 0.570920 3.1:-77269202 None:intergenic
GATGGCCGTGTTAAACGGAC+AGG 0.572114 3.1:+77268618 MS.gene06354:CDS
CTATCACAGCTGTTATAATG+TGG 0.579458 3.1:-77268748 None:intergenic
TGAAGATCCCAAAATGGAGT+AGG 0.579767 3.1:+77271883 MS.gene06354:CDS
ATCAAATCTCCACCATCAGA+AGG 0.581249 3.1:+77271393 MS.gene06354:CDS
GCCTGGTCTATAGCTCAGAT+GGG 0.582657 3.1:+77268791 MS.gene06354:CDS
ATCTCCACGGTAGCTAAGGT+TGG 0.584583 3.1:-77268541 None:intergenic
GATATTGTTGGCATTGAGGA+TGG 0.590897 3.1:+77268561 MS.gene06354:CDS
CTTAACTCACATCATGCTCA+TGG 0.591519 3.1:-77269277 None:intergenic
ATCCCACAAATCTTAACACT+GGG 0.591549 3.1:-77269201 None:intergenic
TATCACAGCTGTTATAATGT+GGG 0.593327 3.1:-77268747 None:intergenic
TTCTCGACGAAGGCAAATAG+GGG 0.607159 3.1:-77271627 None:intergenic
GACTGTAGACTGGCAAACCA+GGG 0.610020 3.1:-77271701 None:intergenic
TTATACCTGTCCGTTTAACA+CGG 0.610345 3.1:-77268623 None:intergenic
AATCAACATTGCGATGAGAG+TGG 0.611911 3.1:-77271769 None:intergenic
CTGAGCTATAGACCAGGCTA+AGG 0.616886 3.1:-77268786 None:intergenic
TGTACGATATACATCTCCAC+AGG 0.631987 3.1:-77271858 None:intergenic
AAGCGTCGGAACAGTGACCC+CGG 0.633976 3.1:+77270726 MS.gene06354:CDS
AAAAGAATATGAATAAGCAA+AGG 0.634204 3.1:-77270791 None:intergenic
ACCCATCTGAGCTATAGACC+AGG 0.634300 3.1:-77268792 None:intergenic
AGCCTCACAGGAGTAAGCGT+CGG 0.646014 3.1:+77270712 MS.gene06354:CDS
AACAGCTGTGATAGGATCTG+GGG 0.646224 3.1:+77268757 MS.gene06354:CDS
CAATGCCAACAATATCTCCA+CGG 0.659764 3.1:-77268554 None:intergenic
GGAACCAACCTTAGCTACCG+TGG 0.665944 3.1:+77268537 MS.gene06354:CDS
TTCCGACGCTTACTCCTGTG+AGG 0.685835 3.1:-77270714 None:intergenic
CAGCCACAATAGATACAATG+AGG 0.686773 3.1:-77271941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAATTTAACATGATT+TGG - chr3.1:77270885-77270904 None:intergenic 10.0%
!!! AAAAAAAAATCATCTTATTT+CGG - chr3.1:77269391-77269410 None:intergenic 10.0%
!!! ATTTTTTACAAATAGATTAA+AGG - chr3.1:77270840-77270859 None:intergenic 10.0%
!! AAAACACAAAATTAAAGAAA+GGG - chr3.1:77269783-77269802 None:intergenic 15.0%
!! TTTAGAAGTTAAAAATAACA+TGG + chr3.1:77271099-77271118 MS.gene06354:intron 15.0%
!!! ACAAATTTTCACTTAATTTT+TGG + chr3.1:77270442-77270461 MS.gene06354:intron 15.0%
!!! ATGATTTTTTTTTTTGCTAT+TGG + chr3.1:77269398-77269417 MS.gene06354:intron 15.0%
!!! GTTATTTTTAACTTCTAAAA+TGG - chr3.1:77271098-77271117 None:intergenic 15.0%
!!! TGAAGTTATATTTTCTTTAA+GGG + chr3.1:77269577-77269596 MS.gene06354:intron 15.0%
!!! TTATAACCTCTTTATTTTTA+AGG + chr3.1:77271031-77271050 MS.gene06354:intron 15.0%
!!! TTGAAGTTATATTTTCTTTA+AGG + chr3.1:77269576-77269595 MS.gene06354:intron 15.0%
!!! TTTATCTAATTTTGTTCAAT+TGG + chr3.1:77270658-77270677 MS.gene06354:intron 15.0%
!! AAAACACCTTAAAAATAAAG+AGG - chr3.1:77271040-77271059 None:intergenic 20.0%
!! AAAACATATTTACGTTAGTT+TGG + chr3.1:77271724-77271743 MS.gene06354:CDS 20.0%
!! AAAAGAATATGAATAAGCAA+AGG - chr3.1:77270794-77270813 None:intergenic 20.0%
!! AATTGGAATATATTGAAGTA+TGG - chr3.1:77269963-77269982 None:intergenic 20.0%
!! CAAAACACAAAATTAAAGAA+AGG - chr3.1:77269784-77269803 None:intergenic 20.0%
!! TGATATATGGTTATATAGTT+TGG + chr3.1:77270117-77270136 MS.gene06354:intron 20.0%
!! TTACAAAACAATTTATCACA+TGG - chr3.1:77268994-77269013 None:intergenic 20.0%
!!! AGATTAGACATTAATTTGTT+TGG - chr3.1:77271357-77271376 None:intergenic 20.0%
!!! TAATTTTGTTCAATTGGTTA+TGG + chr3.1:77270664-77270683 MS.gene06354:intron 20.0%
!!! TAGAAAAAGTTTCTTCTTTT+AGG - chr3.1:77269641-77269660 None:intergenic 20.0%
!!! TATTATCTAGCTTGATTAAT+TGG - chr3.1:77269980-77269999 None:intergenic 20.0%
!!! TCTTTAATTTTGTGTTTTGT+GGG + chr3.1:77269785-77269804 MS.gene06354:intron 20.0%
!!! TTCTTTAATTTTGTGTTTTG+TGG + chr3.1:77269784-77269803 MS.gene06354:intron 20.0%
! AAAGAGAAACTATACTTTCA+TGG + chr3.1:77268916-77268935 MS.gene06354:CDS 25.0%
! AATGTCTAATCTAATTACAC+AGG + chr3.1:77271365-77271384 MS.gene06354:intron 25.0%
! AATTCTTCTTATCAGTACTT+AGG - chr3.1:77271158-77271177 None:intergenic 25.0%
! AGATTACTTACTAATGCTAT+AGG + chr3.1:77270964-77270983 MS.gene06354:intron 25.0%
! AGCATTAGTAAGTAATCTAT+AGG - chr3.1:77270962-77270981 None:intergenic 25.0%
! ATAGTTTCTCTTTCCAAATT+CGG - chr3.1:77268909-77268928 None:intergenic 25.0%
! ATTGGTTATGGAATAGAAAA+CGG + chr3.1:77270676-77270695 MS.gene06354:intron 25.0%
! CATTAGTAAGTAATCTATAG+GGG - chr3.1:77270960-77270979 None:intergenic 25.0%
! CATTTCTTTCTACTGATATA+TGG + chr3.1:77270104-77270123 MS.gene06354:intron 25.0%
! GATAATATTAATTCTGTTGC+TGG + chr3.1:77269993-77270012 MS.gene06354:intron 25.0%
! GCATTAGTAAGTAATCTATA+GGG - chr3.1:77270961-77270980 None:intergenic 25.0%
! TAACTATTAAGGCTATATCT+TGG - chr3.1:77271183-77271202 None:intergenic 25.0%
!! AGATATAGCCTTAATAGTTA+AGG + chr3.1:77271183-77271202 MS.gene06354:intron 25.0%
!! GATATAGCCTTAATAGTTAA+GGG + chr3.1:77271184-77271203 MS.gene06354:intron 25.0%
!! GTTCAGTATTTGAATCTTTT+CGG + chr3.1:77269225-77269244 MS.gene06354:CDS 25.0%
!! TTGAATTCTCTGTCAATTTT+GGG - chr3.1:77271672-77271691 None:intergenic 25.0%
!! TTTGAATTCTCTGTCAATTT+TGG - chr3.1:77271673-77271692 None:intergenic 25.0%
!!! GTTTTAAATTGCACTGTAAA+TGG - chr3.1:77269941-77269960 None:intergenic 25.0%
AAAAAACCTTTAGCATGTGA+GGG - chr3.1:77271000-77271019 None:intergenic 30.0%
AACTACAGACATAGAAACTT+GGG - chr3.1:77269067-77269086 None:intergenic 30.0%
AATAGAAAACGGTACTGTTA+TGG + chr3.1:77270687-77270706 MS.gene06354:intron 30.0%
AATATCATATCACCGAATCA+AGG - chr3.1:77268685-77268704 None:intergenic 30.0%
ACACGTTATAATGCATGTTA+TGG - chr3.1:77269169-77269188 None:intergenic 30.0%
ACAGGAAAGTAAACAGTTAA+AGG - chr3.1:77271843-77271862 None:intergenic 30.0%
ATAGAAAACGGTACTGTTAT+GGG + chr3.1:77270688-77270707 MS.gene06354:intron 30.0%
ATATGCACCCTTAACTATTA+AGG - chr3.1:77271194-77271213 None:intergenic 30.0%
CTATAGTTCAAGACTTCAAA+GGG - chr3.1:77270489-77270508 None:intergenic 30.0%
CTTCTTACGGTTTAAAAATG+TGG + chr3.1:77270524-77270543 MS.gene06354:intron 30.0%
CTTGAACTTATAAACTGTGT+AGG - chr3.1:77270591-77270610 None:intergenic 30.0%
GAATTCAAAGTTAAAATCCC+TGG + chr3.1:77271684-77271703 MS.gene06354:CDS 30.0%
GATGATGCTGAAAAATATCA+TGG - chr3.1:77268837-77268856 None:intergenic 30.0%
GTGTTTGTTTGCGTTTAATT+GGG - chr3.1:77269442-77269461 None:intergenic 30.0%
TAAAAAACCTTTAGCATGTG+AGG - chr3.1:77271001-77271020 None:intergenic 30.0%
TACAAATGAAGATCCCAAAA+TGG + chr3.1:77271877-77271896 MS.gene06354:CDS 30.0%
TATCACAGCTGTTATAATGT+GGG - chr3.1:77268750-77268769 None:intergenic 30.0%
TGTATCGAACAAATTGAAGT+AGG - chr3.1:77270425-77270444 None:intergenic 30.0%
TGTGTTTGTTTGCGTTTAAT+TGG - chr3.1:77269443-77269462 None:intergenic 30.0%
TTACTGCAGAAAACTTCTTA+CGG + chr3.1:77270511-77270530 MS.gene06354:intron 30.0%
TTTAACTGTTTACTTTCCTG+TGG + chr3.1:77271842-77271861 MS.gene06354:CDS 30.0%
! AATAGTTAAGGGTGCATATT+AGG + chr3.1:77271195-77271214 MS.gene06354:intron 30.0%
! ACATATTTACGTTAGTTTGG+AGG + chr3.1:77271727-77271746 MS.gene06354:CDS 30.0%
! GAAAATCTGGAATTTGAGAA+AGG - chr3.1:77270304-77270323 None:intergenic 30.0%
! TTCATATTCTTTTGTTCTCC+TGG + chr3.1:77270801-77270820 MS.gene06354:CDS 30.0%
! TTCCAGATTTTCATAACATG+TGG + chr3.1:77270312-77270331 MS.gene06354:CDS 30.0%
!! CAACATGTAAGTGATTTGTT+TGG - chr3.1:77271298-77271317 None:intergenic 30.0%
!! TTGTTTGAATCAGCTGATTT+TGG + chr3.1:77270169-77270188 MS.gene06354:intron 30.0%
!!! AATATGTTTTGACTGTAGAC+TGG - chr3.1:77271714-77271733 None:intergenic 30.0%
AAAAACCTTTAGCATGTGAG+GGG - chr3.1:77270999-77271018 None:intergenic 35.0%
AAAGACGCATGTCATATTTC+AGG + chr3.1:77270239-77270258 MS.gene06354:CDS 35.0%
AGAAAGAGGCAGCAAAAAAA+TGG + chr3.1:77271646-77271665 MS.gene06354:CDS 35.0%
AGGTATATAACCTGCAACTT+TGG - chr3.1:77270405-77270424 None:intergenic 35.0%
ATCCCACAAATCTTAACACT+GGG - chr3.1:77269204-77269223 None:intergenic 35.0%
CAACTACAGACATAGAAACT+TGG - chr3.1:77269068-77269087 None:intergenic 35.0%
CACATTATAACAGCTGTGAT+AGG + chr3.1:77268749-77268768 MS.gene06354:CDS 35.0%
CACCACATGTTATGAAAATC+TGG - chr3.1:77270317-77270336 None:intergenic 35.0%
CCTATAGTTCAAGACTTCAA+AGG - chr3.1:77270490-77270509 None:intergenic 35.0%
CTATCACAGCTGTTATAATG+TGG - chr3.1:77268751-77268770 None:intergenic 35.0%
CTGAAAAATATCATGGATCC+AGG - chr3.1:77268830-77268849 None:intergenic 35.0%
GATGACAGTTGAACTTGTAT+GGG + chr3.1:77270142-77270161 MS.gene06354:intron 35.0%
GATGCAGTTAGTAACATTCT+TGG + chr3.1:77268938-77268957 MS.gene06354:CDS 35.0%
TATCCCACAAATCTTAACAC+TGG - chr3.1:77269205-77269224 None:intergenic 35.0%
TCCAAATACTATGACGATGA+TGG + chr3.1:77268600-77268619 MS.gene06354:CDS 35.0%
TGATGACAGTTGAACTTGTA+TGG + chr3.1:77270141-77270160 MS.gene06354:intron 35.0%
TGTTACAAGTTACAACCTAG+TGG - chr3.1:77269540-77269559 None:intergenic 35.0%
TTATACCTGTCCGTTTAACA+CGG - chr3.1:77268626-77268645 None:intergenic 35.0%
TTTCTTAACATGTGCCCTTA+GGG - chr3.1:77269618-77269637 None:intergenic 35.0%
! AACCCATACATGATAGCTTT+TGG + chr3.1:77270263-77270282 MS.gene06354:CDS 35.0%
! ACAACATTTTATCTGCTCTG+TGG + chr3.1:77271459-77271478 MS.gene06354:CDS 35.0%
! ATTATAACGTGTTTTGCAGG+CGG + chr3.1:77269177-77269196 MS.gene06354:intron 35.0%
! CAGATTTTCATAACATGTGG+TGG + chr3.1:77270315-77270334 MS.gene06354:CDS 35.0%
! CTGGCAGTTGCATTTTATTA+TGG + chr3.1:77270012-77270031 MS.gene06354:intron 35.0%
! GCTATCGTTATTCACCTTTT+TGG + chr3.1:77271582-77271601 MS.gene06354:CDS 35.0%
! TGAATGGTTTGTATTTCTGC+AGG - chr3.1:77271998-77272017 None:intergenic 35.0%
! TGCATTATAACGTGTTTTGC+AGG + chr3.1:77269174-77269193 MS.gene06354:intron 35.0%
! TGGTGTCTCAAAAGCATATT+GGG + chr3.1:77271539-77271558 MS.gene06354:CDS 35.0%
! TGTGTTTTGTGGGATTCAAA+TGG + chr3.1:77269795-77269814 MS.gene06354:intron 35.0%
! TTCAAGACTTCAAAGGGTAT+CGG - chr3.1:77270483-77270502 None:intergenic 35.0%
! TTGGTGTCTCAAAAGCATAT+TGG + chr3.1:77271538-77271557 MS.gene06354:CDS 35.0%
! TTTTCTGCATGTGATCTGAT+AGG - chr3.1:77270567-77270586 None:intergenic 35.0%
! TTTTGTTCTCCTGGAAATTC+AGG + chr3.1:77270810-77270829 MS.gene06354:CDS 35.0%
!! AATCATTAACTTGTGCCTTG+AGG + chr3.1:77269741-77269760 MS.gene06354:intron 35.0%
!! AATCTTTTCGGAAGTGCAAT+AGG + chr3.1:77269237-77269256 MS.gene06354:CDS 35.0%
!! ATCATTAACTTGTGCCTTGA+GGG + chr3.1:77269742-77269761 MS.gene06354:intron 35.0%
!! CCATTTTTCAACGACGTTTT+GGG + chr3.1:77271792-77271811 MS.gene06354:CDS 35.0%
!! CCTTTGAAGTCTTGAACTAT+AGG + chr3.1:77270487-77270506 MS.gene06354:intron 35.0%
!! TCCATTTTTCAACGACGTTT+TGG + chr3.1:77271791-77271810 MS.gene06354:CDS 35.0%
!! TTCATTGCTTTTCCTTCTGA+TGG - chr3.1:77271408-77271427 None:intergenic 35.0%
!!! TTTTTTTGCTATTGGCCAAG+TGG + chr3.1:77269406-77269425 MS.gene06354:intron 35.0%
AAAACCTTTAGCATGTGAGG+GGG - chr3.1:77270998-77271017 None:intergenic 40.0%
AATCAACATTGCGATGAGAG+TGG - chr3.1:77271772-77271791 None:intergenic 40.0%
ACACTTGGTATGCTCCAAAA+AGG - chr3.1:77271599-77271618 None:intergenic 40.0%
ACGCCAAAAGCTATCATGTA+TGG - chr3.1:77270269-77270288 None:intergenic 40.0%
ATAACAGCTGTGATAGGATC+TGG + chr3.1:77268755-77268774 MS.gene06354:CDS 40.0%
ATCAAATCTCCACCATCAGA+AGG + chr3.1:77271393-77271412 MS.gene06354:CDS 40.0%
CAAGTTACAACCTAGTGGTT+TGG - chr3.1:77269535-77269554 None:intergenic 40.0%
CAATGCCAACAATATCTCCA+CGG - chr3.1:77268557-77268576 None:intergenic 40.0%
CAGACATAGAAACTTGGGAT+AGG - chr3.1:77269062-77269081 None:intergenic 40.0%
CAGCCACAATAGATACAATG+AGG - chr3.1:77271944-77271963 None:intergenic 40.0%
CATGAGCATGATGTGAGTTA+AGG + chr3.1:77269278-77269297 MS.gene06354:intron 40.0%
CATTTCCTGTGTCCTTGATT+CGG + chr3.1:77268670-77268689 MS.gene06354:intron 40.0%
CCCAAAACGTCGTTGAAAAA+TGG - chr3.1:77271795-77271814 None:intergenic 40.0%
CGCCAAAAGCTATCATGTAT+GGG - chr3.1:77270268-77270287 None:intergenic 40.0%
CTCATTGTATCTATTGTGGC+TGG + chr3.1:77271942-77271961 MS.gene06354:CDS 40.0%
CTGCCTCATTGTATCTATTG+TGG + chr3.1:77271938-77271957 MS.gene06354:CDS 40.0%
CTGTAAATGGATGCTCACAT+TGG - chr3.1:77269928-77269947 None:intergenic 40.0%
CTTAACTCACATCATGCTCA+TGG - chr3.1:77269280-77269299 None:intergenic 40.0%
CTTGGAATTTCCAAAGTTGC+AGG + chr3.1:77270392-77270411 MS.gene06354:CDS 40.0%
GCCATCATCGTCATAGTATT+TGG - chr3.1:77268604-77268623 None:intergenic 40.0%
GTTTCTTAACATGTGCCCTT+AGG - chr3.1:77269619-77269638 None:intergenic 40.0%
TAACAGCTGTGATAGGATCT+GGG + chr3.1:77268756-77268775 MS.gene06354:CDS 40.0%
TGAAGATCCCAAAATGGAGT+AGG + chr3.1:77271883-77271902 MS.gene06354:CDS 40.0%
TGGAGATATTGTTGGCATTG+AGG + chr3.1:77268557-77268576 MS.gene06354:CDS 40.0%
TGTACGATATACATCTCCAC+AGG - chr3.1:77271861-77271880 None:intergenic 40.0%
TTATGTGTCCATACCTCTGA+TGG + chr3.1:77270215-77270234 MS.gene06354:CDS 40.0%
TTGTTGCCTTAATCTGAGTC+AGG + chr3.1:77268704-77268723 MS.gene06354:intron 40.0%
TTTCTCGACGAAGGCAAATA+GGG - chr3.1:77271631-77271650 None:intergenic 40.0%
! AAAGGTGTACCTGAATTTCC+AGG - chr3.1:77270822-77270841 None:intergenic 40.0%
! ATACATGATAGCTTTTGGCG+TGG + chr3.1:77270268-77270287 MS.gene06354:CDS 40.0%
! ATCCACTTCCTACTCCATTT+TGG - chr3.1:77271894-77271913 None:intergenic 40.0%
! GATATTGTTGGCATTGAGGA+TGG + chr3.1:77268561-77268580 MS.gene06354:CDS 40.0%
! GGTTGTAACTTGTAACAACG+AGG + chr3.1:77269543-77269562 MS.gene06354:intron 40.0%
! TCCACTTCCTACTCCATTTT+GGG - chr3.1:77271893-77271912 None:intergenic 40.0%
! TTATAACGTGTTTTGCAGGC+GGG + chr3.1:77269178-77269197 MS.gene06354:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr3.1:77269759-77269778 None:intergenic 40.0%
!! AGTGTTAACTTGTGCCCTAA+GGG + chr3.1:77269601-77269620 MS.gene06354:intron 40.0%
!! ATTGCTTTTCCTTCTGATGG+TGG - chr3.1:77271405-77271424 None:intergenic 40.0%
!! GAAAACCCCCCATACTTTTT+GGG - chr3.1:77270752-77270771 None:intergenic 40.0%
!! GAGTAGGAAGTGGATTATTC+TGG + chr3.1:77271899-77271918 MS.gene06354:CDS 40.0%
!! GGCTGTGAAGTCATTTTATG+TGG - chr3.1:77269514-77269533 None:intergenic 40.0%
!! GTCATTTTATGTGGAGTCCA+CGG - chr3.1:77269505-77269524 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTA+AGG + chr3.1:77269600-77269619 MS.gene06354:intron 40.0%
!!! ATCAGCTGATTTTGGTTGAC+AGG + chr3.1:77270177-77270196 MS.gene06354:intron 40.0%
!!! TCAGCTGATTTTGGTTGACA+GGG + chr3.1:77270178-77270197 MS.gene06354:intron 40.0%
!!! TGCTTTTGAGACACCAAATC+CGG - chr3.1:77271535-77271554 None:intergenic 40.0%
AACAGCTGTGATAGGATCTG+GGG + chr3.1:77268757-77268776 MS.gene06354:CDS 45.0%
AATCTGAGTCAGGAACCGTT+TGG + chr3.1:77268714-77268733 MS.gene06354:intron 45.0%
ACGGTTCCTGACTCAGATTA+AGG - chr3.1:77268713-77268732 None:intergenic 45.0%
AGCTACCGTGGAGATATTGT+TGG + chr3.1:77268549-77268568 MS.gene06354:CDS 45.0%
ATTTGCCTTCGTCGAGAAAG+AGG + chr3.1:77271632-77271651 MS.gene06354:CDS 45.0%
CAATATCTCCACGGTAGCTA+AGG - chr3.1:77268548-77268567 None:intergenic 45.0%
CTTTCTCGACGAAGGCAAAT+AGG - chr3.1:77271632-77271651 None:intergenic 45.0%
GCGTTTAATTGGGCATGTGT+TGG - chr3.1:77269432-77269451 None:intergenic 45.0%
GGCCCAGTGTTAAGATTTGT+GGG + chr3.1:77269199-77269218 MS.gene06354:CDS 45.0%
TACCACACAACTGACAAACG+TGG + chr3.1:77270049-77270068 MS.gene06354:intron 45.0%
TATCACCGAATCAAGGACAC+AGG - chr3.1:77268678-77268697 None:intergenic 45.0%
TCCAAGAGCAAGAGCAATTG+TGG - chr3.1:77270378-77270397 None:intergenic 45.0%
TCCACAATTGCTCTTGCTCT+TGG + chr3.1:77270374-77270393 MS.gene06354:CDS 45.0%
TCCCAAAATGGAGTAGGAAG+TGG + chr3.1:77271889-77271908 MS.gene06354:CDS 45.0%
TTCTCGACGAAGGCAAATAG+GGG - chr3.1:77271630-77271649 None:intergenic 45.0%
! AAAGTATGGGGGGTTTTCCA+AGG + chr3.1:77270754-77270773 MS.gene06354:CDS 45.0%
! ACATGCGTCTTTTCCATCAG+AGG - chr3.1:77270231-77270250 None:intergenic 45.0%
! ACGATGATGGCCGTGTTAAA+CGG + chr3.1:77268613-77268632 MS.gene06354:CDS 45.0%
! CGTCTTTTCCATCAGAGGTA+TGG - chr3.1:77270226-77270245 None:intergenic 45.0%
! CTCGCTGATTGTTATCGTTG+TGG + chr3.1:77268878-77268897 MS.gene06354:CDS 45.0%
! GGAAAACCCCCCATACTTTT+TGG - chr3.1:77270753-77270772 None:intergenic 45.0%
!! GTATCTATTGTGGCTGGTCT+TGG + chr3.1:77271948-77271967 MS.gene06354:CDS 45.0%
!!! AACGACGTTTTGGGAGTGAT+CGG + chr3.1:77271801-77271820 MS.gene06354:CDS 45.0%
!!! TGCATGGGATATGCTGCTTT+TGG + chr3.1:77271483-77271502 MS.gene06354:CDS 45.0%
!! AAATATAGAAAAAAAATTAT+TGG - chr3.1:77269720-77269739 None:intergenic 5.0%
ACCCATCTGAGCTATAGACC+AGG - chr3.1:77268795-77268814 None:intergenic 50.0%
ACTGTTATGGGTAGCCTCAC+AGG + chr3.1:77270700-77270719 MS.gene06354:CDS 50.0%
AGCCTGGTCTATAGCTCAGA+TGG + chr3.1:77268790-77268809 MS.gene06354:CDS 50.0%
AGGCGATGTTTCCAAGACCT+TGG - chr3.1:77270774-77270793 None:intergenic 50.0%
ATAGGGGTTGGGCATACACT+TGG - chr3.1:77271614-77271633 None:intergenic 50.0%
ATCTCCACGGTAGCTAAGGT+TGG - chr3.1:77268544-77268563 None:intergenic 50.0%
CAAACAAACACACGCACACG+AGG + chr3.1:77269451-77269470 MS.gene06354:intron 50.0%
CATACCCCCTCACATGCTAA+AGG + chr3.1:77270991-77271010 MS.gene06354:intron 50.0%
CGTTGTGGTGACACCGAATT+TGG + chr3.1:77268893-77268912 MS.gene06354:CDS 50.0%
CTGAGCTATAGACCAGGCTA+AGG - chr3.1:77268789-77268808 None:intergenic 50.0%
GACGAAGGCAAATAGGGGTT+GGG - chr3.1:77271625-77271644 None:intergenic 50.0%
GACTGTAGACTGGCAAACCA+GGG - chr3.1:77271704-77271723 None:intergenic 50.0%
GACTTCACAGCCAAACCACT+AGG + chr3.1:77269522-77269541 MS.gene06354:intron 50.0%
GCCTGGTCTATAGCTCAGAT+GGG + chr3.1:77268791-77268810 MS.gene06354:CDS 50.0%
GGGCCCAGTGTTAAGATTTG+TGG + chr3.1:77269198-77269217 MS.gene06354:CDS 50.0%
GGTCTATAGCTCAGATGGGT+TGG + chr3.1:77268795-77268814 MS.gene06354:CDS 50.0%
TATCTGCTCTGTGGCTGCAT+GGG + chr3.1:77271468-77271487 MS.gene06354:CDS 50.0%
TGACTGTAGACTGGCAAACC+AGG - chr3.1:77271705-77271724 None:intergenic 50.0%
TTATCTGCTCTGTGGCTGCA+TGG + chr3.1:77271467-77271486 MS.gene06354:CDS 50.0%
! ACGGTAGCTAAGGTTGGTTC+CGG - chr3.1:77268538-77268557 None:intergenic 50.0%
! GTGGGAGCATGTAGTCCAAA+CGG - chr3.1:77268732-77268751 None:intergenic 50.0%
!! CTTTTGGAGACAATGCGCCA+GGG + chr3.1:77271499-77271518 MS.gene06354:CDS 50.0%
!!! ACGACGTTTTGGGAGTGATC+GGG + chr3.1:77271802-77271821 MS.gene06354:CDS 50.0%
!!! TGATCGGGGCATTGGGATTT+TGG + chr3.1:77271817-77271836 MS.gene06354:CDS 50.0%
AAACACACGCACACGAGGAG+GGG + chr3.1:77269456-77269475 MS.gene06354:intron 55.0%
ACAAACACACGCACACGAGG+AGG + chr3.1:77269454-77269473 MS.gene06354:intron 55.0%
AGCCTCACAGGAGTAAGCGT+CGG + chr3.1:77270712-77270731 MS.gene06354:CDS 55.0%
CAAACACACGCACACGAGGA+GGG + chr3.1:77269455-77269474 MS.gene06354:intron 55.0%
CGACGAAGGCAAATAGGGGT+TGG - chr3.1:77271626-77271645 None:intergenic 55.0%
CGCCACGTTTGTCAGTTGTG+TGG - chr3.1:77270054-77270073 None:intergenic 55.0%
GATGGCCGTGTTAAACGGAC+AGG + chr3.1:77268618-77268637 MS.gene06354:CDS 55.0%
GGAACCAACCTTAGCTACCG+TGG + chr3.1:77268537-77268556 MS.gene06354:CDS 55.0%
TGACCCCGGCCCAAAAAGTA+TGG + chr3.1:77270740-77270759 MS.gene06354:CDS 55.0%
TGCTGCCTCTTTCTCGACGA+AGG - chr3.1:77271640-77271659 None:intergenic 55.0%
TTCCGACGCTTACTCCTGTG+AGG - chr3.1:77270717-77270736 None:intergenic 55.0%
TTTGGGAGTGATCGGGGCAT+TGG + chr3.1:77271809-77271828 MS.gene06354:CDS 55.0%
! ACCCCGGCCCAAAAAGTATG+GGG + chr3.1:77270742-77270761 MS.gene06354:CDS 55.0%
! GACCCCGGCCCAAAAAGTAT+GGG + chr3.1:77270741-77270760 MS.gene06354:CDS 55.0%
! TGGGGGGTTTTCCAAGGTCT+TGG + chr3.1:77270760-77270779 MS.gene06354:CDS 55.0%
! TTGGCTCATTGGTCGGTGTC+TGG + chr3.1:77271967-77271986 MS.gene06354:CDS 55.0%
! TTGGGAGTGATCGGGGCATT+GGG + chr3.1:77271810-77271829 MS.gene06354:CDS 55.0%
! TTGGGCATGTGTTGGCCACT+TGG - chr3.1:77269424-77269443 None:intergenic 55.0%
!! ACCCCCCATACTTTTTGGGC+CGG - chr3.1:77270748-77270767 None:intergenic 55.0%
!! ATGGGTTGGATTGCTGGTCC+TGG + chr3.1:77268809-77268828 MS.gene06354:CDS 55.0%
!! GCTCAGATGGGTTGGATTGC+TGG + chr3.1:77268803-77268822 MS.gene06354:CDS 55.0%
!! GCTGGTCTTGGCTCATTGGT+CGG + chr3.1:77271960-77271979 MS.gene06354:CDS 55.0%
!! GCTTTTGGAGACAATGCGCC+AGG + chr3.1:77271498-77271517 MS.gene06354:CDS 55.0%
!! TGTGGCTGGTCTTGGCTCAT+TGG + chr3.1:77271956-77271975 MS.gene06354:CDS 55.0%
!!! CGACGTTTTGGGAGTGATCG+GGG + chr3.1:77271803-77271822 MS.gene06354:CDS 55.0%
AACACACGCACACGAGGAGG+GGG + chr3.1:77269457-77269476 MS.gene06354:intron 60.0%
AGACACCAAATCCGGCGAGC+AGG - chr3.1:77271527-77271546 None:intergenic 60.0%
GGAGTCCACGGTTTGAACCC+AGG - chr3.1:77269493-77269512 None:intergenic 60.0%
! CCCCGGCCCAAAAAGTATGG+GGG + chr3.1:77270743-77270762 MS.gene06354:CDS 60.0%
! CCCGGCCCAAAAAGTATGGG+GGG + chr3.1:77270744-77270763 MS.gene06354:CDS 60.0%
!! AAGCGTCGGAACAGTGACCC+CGG + chr3.1:77270726-77270745 MS.gene06354:CDS 60.0%
!! CCCCCATACTTTTTGGGCCG+GGG - chr3.1:77270746-77270765 None:intergenic 60.0%
!! CCCCCCATACTTTTTGGGCC+GGG - chr3.1:77270747-77270766 None:intergenic 60.0%
AATCCGGCGAGCAGGTTCCC+TGG - chr3.1:77271519-77271538 None:intergenic 65.0%
CACGAGGAGGGGGAATGTGG+TGG + chr3.1:77269467-77269486 MS.gene06354:intron 65.0%
GAGGGGGAATGTGGTGGCCT+GGG + chr3.1:77269473-77269492 MS.gene06354:intron 65.0%
GCACACGAGGAGGGGGAATG+TGG + chr3.1:77269464-77269483 MS.gene06354:intron 65.0%
GGGAACCTGCTCGCCGGATT+TGG + chr3.1:77271519-77271538 MS.gene06354:CDS 65.0%
GGTGGCCTGGGTTCAAACCG+TGG + chr3.1:77269485-77269504 MS.gene06354:intron 65.0%
! CTGGGGTGCTCTCCTTAGCC+TGG + chr3.1:77268774-77268793 MS.gene06354:CDS 65.0%
GGAGGGGGAATGTGGTGGCC+TGG + chr3.1:77269472-77269491 MS.gene06354:intron 70.0%
GCGCCAGGGAACCTGCTCGC+CGG + chr3.1:77271513-77271532 MS.gene06354:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 77268519 77272031 77268519 ID=MS.gene06354
chr3.1 mRNA 77268519 77272031 77268519 ID=MS.gene06354.t1;Parent=MS.gene06354
chr3.1 exon 77268519 77268639 77268519 ID=MS.gene06354.t1.exon1;Parent=MS.gene06354.t1
chr3.1 CDS 77268519 77268639 77268519 ID=cds.MS.gene06354.t1;Parent=MS.gene06354.t1
chr3.1 exon 77268726 77268959 77268726 ID=MS.gene06354.t1.exon2;Parent=MS.gene06354.t1
chr3.1 CDS 77268726 77268959 77268726 ID=cds.MS.gene06354.t1;Parent=MS.gene06354.t1
chr3.1 exon 77269196 77269289 77269196 ID=MS.gene06354.t1.exon3;Parent=MS.gene06354.t1
chr3.1 CDS 77269196 77269289 77269196 ID=cds.MS.gene06354.t1;Parent=MS.gene06354.t1
chr3.1 exon 77270199 77270413 77270199 ID=MS.gene06354.t1.exon4;Parent=MS.gene06354.t1
chr3.1 CDS 77270199 77270413 77270199 ID=cds.MS.gene06354.t1;Parent=MS.gene06354.t1
chr3.1 exon 77270692 77270831 77270692 ID=MS.gene06354.t1.exon5;Parent=MS.gene06354.t1
chr3.1 CDS 77270692 77270831 77270692 ID=cds.MS.gene06354.t1;Parent=MS.gene06354.t1
chr3.1 exon 77271387 77272031 77271387 ID=MS.gene06354.t1.exon6;Parent=MS.gene06354.t1
chr3.1 CDS 77271387 77272031 77271387 ID=cds.MS.gene06354.t1;Parent=MS.gene06354.t1
Gene Sequence

>MS.gene06354

ATGGTAGAACACTCTTCCGGAACCAACCTTAGCTACCGTGGAGATATTGTTGGCATTGAGGATGGCACATCTCTACATGATTCCAAATACTATGACGATGATGGCCGTGTTAAACGGACAGGTATAATGAATGTATATTATATGCTTTGTACATTTCCTGTGTCCTTGATTCGGTGATATGATATTTGTTGCCTTAATCTGAGTCAGGAACCGTTTGGACTACATGCTCCCACATTATAACAGCTGTGATAGGATCTGGGGTGCTCTCCTTAGCCTGGTCTATAGCTCAGATGGGTTGGATTGCTGGTCCTGGATCCATGATATTTTTCAGCATCATCACTCTGTATACTTCATCATTTCTCGCTGATTGTTATCGTTGTGGTGACACCGAATTTGGAAAGAGAAACTATACTTTCATGGATGCAGTTAGTAACATTCTTGGTAATACATGTATATTAATACATGAATAGCACCATGTGATAAATTGTTTTGTAAATCGAGTATGACGTGATCTTCTTTTAAAAAAAAAAACATAAAATTCCTATCCCAAGTTTCTATGTCTGTAGTTGATTTTTTTTTTTAAATGTCATGTAAATTAACATGTTTGTGTATATATTAACGATCACTTTTTTTAGATGAAATGCACACCATAACATGCATTATAACGTGTTTTGCAGGCGGGCCCAGTGTTAAGATTTGTGGGATAGTTCAGTATTTGAATCTTTTCGGAAGTGCAATAGGATACAATATTGCAGCTGCCATGAGCATGATGTGAGTTAAGGCATACTATGTCTTTGAAATCACGAAGTTTAGAAATTGTTTTGATTTGTCAACAGTACACACACACACACACACACAGAGTAATAAAACCGAAATAAGATGATTTTTTTTTTTGCTATTGGCCAAGTGGCCAACACATGCCCAATTAAACGCAAACAAACACACGCACACGAGGAGGGGGAATGTGGTGGCCTGGGTTCAAACCGTGGACTCCACATAAAATGACTTCACAGCCAAACCACTAGGTTGTAACTTGTAACAACGAGGACAAATAGATTTGAAGTTATATTTTCTTTAAGGGTAGTGTTAACTTGTGCCCTAAGGGCACATGTTAAGAAACCTAAAAGAAGAAACTTTTTCTAAAATTTTGTGCATTTAAATGATTAAAAAGTTAAATATTAAATGCAATGCACACATTCCAATAATTTTTTTTCTATATTTGAATCATTAACTTGTGCCTTGAGGGCACAAGTTAACATTTCCCTTTCTTTAATTTTGTGTTTTGTGGGATTCAAATGGACTTTAATTTTATTCATATTGATTTAGCTGTTTCAACAATTTTTAGTAAAGCTAGCAAAATAAACTTATCAACGTAAAAAGAATTTGAGCTTATCTTTAATGTATTTCCAATGTGAGCATCCATTTACAGTGCAATTTAAAACCATACTTCAATATATTCCAATTAATCAAGCTAGATAATATTAATTCTGTTGCTGGCAGTTGCATTTTATTATGGTGTGTATTAAATTGTACCACACAACTGACAAACGTGGCGTGATTGTTATAATTCACTGTCACTTCACAACATTTCTTTCTACTGATATATGGTTATATAGTTTGGTTGATGACAGTTGAACTTGTATGGGTTTGTTGTTTGAATCAGCTGATTTTGGTTGACAGGGAAATCAGAAAGTCTTTATGTGTCCATACCTCTGATGGAAAAGACGCATGTCATATTTCAGGCAACCCATACATGATAGCTTTTGGCGTGGCACAACTTTTCCTTTCTCAAATTCCAGATTTTCATAACATGTGGTGGCTCTCAATAGTTGCTGCAGTCATGTCTTTCTTCTATTCCACAATTGCTCTTGCTCTTGGAATTTCCAAAGTTGCAGGTTATATACCTACTTCAATTTGTTCGATACAAATTTTCACTTAATTTTTGGCTATTGTTTAATCAGCCGATACCCTTTGAAGTCTTGAACTATAGGTTTACTGCAGAAAACTTCTTACGGTTTAAAAATGTGGTGACATGATTTACTGAACCTATCAGATCACATGCAGAAAAGCCTACACAGTTTATAAGTTCAAGATGATATATTTTTGTAGTTGAGCTATAATTAAAGTTCATTCTTACATTTTATCTAATTTTGTTCAATTGGTTATGGAATAGAAAACGGTACTGTTATGGGTAGCCTCACAGGAGTAAGCGTCGGAACAGTGACCCCGGCCCAAAAAGTATGGGGGGTTTTCCAAGGTCTTGGAAACATCGCCTTTGCTTATTCATATTCTTTTGTTCTCCTGGAAATTCAGGTACACCTTTAATCTATTTGTAAAAAATTAAGAAAAGACAACATCATGTGCCAAATCATGTTAAATTTTAATATCTATTTAGAGAGAGATACAAAATTTAACATGACAATGCTGTGATATTTCAACCCCTATAGATTACTTACTAATGCTATAGGCACACATACCCCCTCACATGCTAAAGGTTTTTTATTTTATTTTTTTATAACCTCTTTATTTTTAAGGTGTTTTTTTATGAGAATTTTTTTTTGTTCTTTACTCATTTGCCATTTTAGAAGTTAAAAATAACATGGATTACTATTTTATCAATTAAATTTTTATTTTCACCTAAGTACTGATAAGAAGAATTTACCAAGATATAGCCTTAATAGTTAAGGGTGCATATTAGGAAATTTAACAATAGTTTTAGTCTTGCATCACTTACATGTTGAGAGATGTGAGTATACAAATGTGTAACACGCTTTATCCAAACAAATCACTTACATGTTGAGAGATGTGAGTATACAAATGTGTAACACGCTTTATCCAAACAAATTAATGTCTAATCTAATTACACAGGACACAATCAAATCTCCACCATCAGAAGGAAAAGCAATGAAGAAAGCTGCGAAGCTAAGTATTGCAGTAACTACAACATTTTATCTGCTCTGTGGCTGCATGGGATATGCTGCTTTTGGAGACAATGCGCCAGGGAACCTGCTCGCCGGATTTGGTGTCTCAAAAGCATATTGGGTTGTAGATGCTGCTAATGCTGCTATCGTTATTCACCTTTTTGGAGCATACCAAGTGTATGCCCAACCCCTATTTGCCTTCGTCGAGAAAGAGGCAGCAAAAAAATGGCCCAAAATTGACAGAGAATTCAAAGTTAAAATCCCTGGTTTGCCAGTCTACAGTCAAAACATATTTACGTTAGTTTGGAGGACAGTGTTTGTTATCATCTCCACTCTCATCGCAATGTTGATTCCATTTTTCAACGACGTTTTGGGAGTGATCGGGGCATTGGGATTTTGGCCTTTAACTGTTTACTTTCCTGTGGAGATGTATATCGTACAAATGAAGATCCCAAAATGGAGTAGGAAGTGGATTATTCTGGAAATAATGAGTACTTTCTGCCTCATTGTATCTATTGTGGCTGGTCTTGGCTCATTGGTCGGTGTCTGGATCGACCTGCAGAAATACAAACCATTCAGCTTATCGAATTAA
Protein sequence

>MS.gene06354.t1

MVEHSSGTNLSYRGDIVGIEDGTSLHDSKYYDDDGRVKRTGTVWTTCSHIITAVIGSGVLSLAWSIAQMGWIAGPGSMIFFSIITLYTSSFLADCYRCGDTEFGKRNYTFMDAVSNILGGPSVKICGIVQYLNLFGSAIGYNIAAAMSMMEIRKSLCVHTSDGKDACHISGNPYMIAFGVAQLFLSQIPDFHNMWWLSIVAAVMSFFYSTIALALGISKVAENGTVMGSLTGVSVGTVTPAQKVWGVFQGLGNIAFAYSYSFVLLEIQDTIKSPPSEGKAMKKAAKLSIAVTTTFYLLCGCMGYAAFGDNAPGNLLAGFGVSKAYWVVDAANAAIVIHLFGAYQVYAQPLFAFVEKEAAKKWPKIDREFKVKIPGLPVYSQNIFTLVWRTVFVIISTLIAMLIPFFNDVLGVIGALGFWPLTVYFPVEMYIVQMKIPKWSRKWIILEIMSTFCLIVSIVAGLGSLVGVWIDLQKYKPFSLSN