AlfalfaGEDB | MS.gene064082

M. sativa cultivar XinJiangDaYe / MS.gene064082

KEGG: -
GO: -
PFAM: PF02985.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064082.t1	XP_013453257.1	95.1	812	38	2	1	812	1	810	0.00E+00	1493.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064082.t1	F4IK92	41.0	825	452	17	1	812	14	816	2.1e-146	521.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064082.t1	A0A072UCW5	95.1	812	38	2	1	812	1	810	0.0e+00	1493.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene064082	0.822888	1.86E-53	-1.69E-46
MS.gene049418	MS.gene064082	0.820204	7.76E-53	-1.69E-46
MS.gene04985	MS.gene064082	0.81035	1.20E-50	-1.69E-46
MS.gene049989	MS.gene064082	0.881324	2.64E-70	-1.69E-46
MS.gene050297	MS.gene064082	0.880364	5.84E-70	-1.69E-46
MS.gene050310	MS.gene064082	0.813935	1.99E-51	-1.69E-46
MS.gene050648	MS.gene064082	0.834063	3.72E-56	-1.69E-46
MS.gene051067	MS.gene064082	0.808857	2.52E-50	-1.69E-46
MS.gene051094	MS.gene064082	0.829984	3.79E-55	-1.69E-46
MS.gene051263	MS.gene064082	0.831497	1.61E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064082.t1	MTR_6g093150	95.074	812	38	2	1	812	1	810	0.0	1593
MS.gene064082.t1	MTR_6g093150	94.389	606	32	2	207	812	50	653	0.0	1177
MS.gene064082.t1	MTR_3g050060	25.685	876	529	19	12	787	27	880	1.16e-68	244
MS.gene064082.t1	MTR_3g050060	25.143	875	546	19	12	787	27	891	1.74e-67	241
MS.gene064082.t1	MTR_4g107110	36.268	284	176	1	7	290	1	279	1.24e-50	185
MS.gene064082.t1	MTR_4g107110	36.268	284	176	1	7	290	1	279	1.61e-49	185
MS.gene064082.t1	MTR_5g036950	26.950	564	348	13	13	556	22	541	4.12e-44	171

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064082.t1	AT2G07170	41.963	815	437	16	11	812	25	816	0.0	567
MS.gene064082.t1	AT1G27210	30.669	538	325	12	12	548	34	524	4.35e-53	195
MS.gene064082.t1	AT4G27060	36.949	295	177	4	12	299	41	333	6.34e-49	186
MS.gene064082.t1	AT4G27060	21.978	364	227	12	494	812	504	855	3.52e-19	93.6
MS.gene064082.t1	AT1G50890	33.564	289	181	5	12	291	36	322	7.83e-45	174
MS.gene064082.t1	AT1G50890	24.731	279	193	7	501	772	503	771	9.69e-17	85.5
MS.gene064082.t1	AT1G59850	33.333	282	181	2	12	291	21	297	8.33e-37	145
MS.gene064082.t1	AT5G62580	32.056	287	181	5	14	290	7	289	8.91e-34	138
MS.gene064082.t1	AT5G62580	32.056	287	181	5	14	290	7	289	8.91e-34	138

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Find 157 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGATGCATCAGTTAC+AGG	0.369760	6.4:-63715236	MS.gene064082:intron
AAAGCATGTCAAAATGATGT+TGG	0.506304	6.4:-63715727	MS.gene064082:CDS
AAAGCGGCTTCTGTTGCGTT+GGG	0.473923	6.4:-63716446	MS.gene064082:CDS
AAATATTGGAAAATGCTTCC+GGG	0.434596	6.4:-63716197	MS.gene064082:CDS
AAATTATCCTCTCTGACTTT+TGG	0.155108	6.4:+63714491	None:intergenic
AACAACCGCAGCAACAATTT+TGG	0.226264	6.4:+63716880	None:intergenic
AACATCTCTATGTCTGGACT+CGG	0.546866	6.4:+63715807	None:intergenic
AACGAGAATAAGTTCGTCAC+CGG	0.604731	6.4:+63714274	None:intergenic
AACGGTTTGCTTCTCACATT+TGG	0.314748	6.4:+63715436	None:intergenic
AACGTGCCAATCATCTCTTT+TGG	0.320011	6.4:+63715690	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCATGTCAAAATGATGT+TGG	-	chr6.4:63714999-63715018	MS.gene064082:intron	30.0%
AAATAACTGATATACTTCCC+AGG	+	chr6.4:63716966-63716985	None:intergenic	30.0%
AAATATTGGAAAATGCTTCC+GGG	-	chr6.4:63714529-63714548	MS.gene064082:CDS	30.0%
ACATCAATGTTGTGTACAAA+GGG	-	chr6.4:63715412-63715431	MS.gene064082:CDS	30.0%
AGATCTAAACTCTGCATATA+TGG	-	chr6.4:63716417-63716436	MS.gene064082:CDS	30.0%
AGGATAATTTGAACTGCTTA+GGG	-	chr6.4:63716248-63716267	MS.gene064082:intron	30.0%
ATTGAAAGAGCAATGCAATT+TGG	+	chr6.4:63717038-63717057	None:intergenic	30.0%
ATTGTTTACAAAGCAGTCAT+GGG	+	chr6.4:63715258-63715277	None:intergenic	30.0%
CAACATTGATGTGTAATTTG+GGG	+	chr6.4:63715404-63715423	None:intergenic	30.0%
CAACTTATTACTTCCTCTAA+CGG	+	chr6.4:63715311-63715330	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	63713575	63717173	63713575	ID=MS.gene064082
chr6.4	mRNA	63713575	63717173	63713575	ID=MS.gene064082.t1;Parent=MS.gene064082
chr6.4	exon	63716361	63717173	63716361	ID=MS.gene064082.t1.exon1;Parent=MS.gene064082.t1
chr6.4	CDS	63716361	63717173	63716361	ID=cds.MS.gene064082.t1;Parent=MS.gene064082.t1
chr6.4	exon	63716153	63716255	63716153	ID=MS.gene064082.t1.exon2;Parent=MS.gene064082.t1
chr6.4	CDS	63716153	63716255	63716153	ID=cds.MS.gene064082.t1;Parent=MS.gene064082.t1
chr6.4	exon	63715237	63715880	63715237	ID=MS.gene064082.t1.exon3;Parent=MS.gene064082.t1
chr6.4	CDS	63715237	63715880	63715237	ID=cds.MS.gene064082.t1;Parent=MS.gene064082.t1
chr6.4	exon	63714142	63714852	63714142	ID=MS.gene064082.t1.exon4;Parent=MS.gene064082.t1
chr6.4	CDS	63714142	63714852	63714142	ID=cds.MS.gene064082.t1;Parent=MS.gene064082.t1
chr6.4	exon	63713575	63713740	63713575	ID=MS.gene064082.t1.exon5;Parent=MS.gene064082.t1
chr6.4	CDS	63713575	63713740	63713575	ID=cds.MS.gene064082.t1;Parent=MS.gene064082.t1

Gene Sequence

>MS.gene064082

ATGAAGACCAACAACAAGCTGAGTAGTAATTTCGAGATGAAGCAAAGAGTACACAATGCATTAAACAAAGTTGGAGATCGAGACACACACGATATCGGAACCAAAGAACTCGAAACAATTCTCCACTCATTAACTCCACATTCCATCTCCTCATTCCTCTCTTGCATTCTCGACATTCACTCCGAACTAAAACCTTCCATTAGAAAACAATCTCTCAAACTCATCGCGACATTAGCCACTGTTTATGAATCTCTTATACTCCCACATCTCACCAAAATTGTTGCTGCGGTTGTTAAATGTTTTAGGGATCCAGATTCTTCTGTTAGAGAAGGTTGTATTGAAATGTTCGCGGTTTTAGCTTTGAAATTAGCGAATCAAGGTAATGAAGATAAGGTGTTTGTGTTATTGTCTAGTCCTATTTTCGATGCTCTTGTTGGTGAACAGAATAAGCATGTTCAATCTGCTTCAGCGTTTTGTCTTGCTGGTATTGTACAAAACACGCGGAATCCTCCTGTTTCGGTTTTGTATGGTATGTTGATTAGGATTCTTAAGTTGCTTAAGAATCCACATTTTATGGCGAAACCTGCGTTGATTGAGTTGAATAGGTGTATTATTCAGGCTGGTGGAGCTTCGACGCAGAGTGTTCTTTTGACGGCTGTTGGTAGTATTAGAGAGGGTTTGAAAGATACGGATTGGAAAACACGTAAAGCGGCTTCTGTTGCGTTGGGACAAATTGCTTTGGCTCGTGCTTCGTTCTTGTCATCTTTAAGGGTTTCTTGTATTCATTCTCTTGATTCCTCGAGGTTTGACAAGGTGATTTCTCACTCTCGGTTTTTTACATAGTTAGTATTACATTTCTCAATTTTCATGTTTTCCGTTAACTAAATTATAAGTGTATATATTAATAATCGATTATAGGTGAAACCAGTGAGGGATGCGGTTTTACAAGCTCTTAAATATTGGAAAATGCTTCCGGGTCATTATACTACCGAGCCTTCAGAAACTGGATCCTCCTTCAAAGGTTTACCTTTGCTCTTTCTCCCTCTTTTTGAATTTTGATATCAATATTGCTATTGGTTGGAATAAGGATATATATAAAGACATTTGGTAGTATTATAAGTCCCAATTAGATAGTGTTCTTGTTTATATTCATCTTAATTAACGTTGAATGCATGACTATAAAATACTAACATGCTAATATCATCATCTGTTTGTACGAAACTTTCTGATTGTGATTGCTAATCTTATACATTGGCATGCTTTTAAGCTCTTCTTAACTTATGCTTTCTACAGAAAATATCTGCGGAGGTGACTCTGTGGATCTCAGTAGTACTACTACTACCACCGAGTCCAGACATAGAGATGTTAGGCTCCAAAAACTTAATATGAAATCAACTACGGGAAGGATTCCTTTGTCTGTAAGAAAAGCATGTCAAAATGATGTTGGACATCTTCGTCATCCCAAAAGAGATGATTGGCACGTTGAAGTTGCAGTCCCCAGAACACATTCTGTAGTGGAATTCCATAATGAAGAGTTTGAGAGTAGTTCTGTCACCAAGCCGCTACAAACAATGAGTCTTGATGTTACAAGCATGCAGGATGTGGGTTATGAATATGGGCCTATGGATGACAAGCAGGAGTGTTCTTCTGTTTCTAACTATGAAACGAAGTTTTTAACTTCCCATGACTGCTTTGTAAACAATGGACTACCGAAGCCAAATGTGAGAAGCAAACCGTTAGAGGAAGTAATAAGTTGTAATGAACAAATGTACTCCATAAAGATGCAGGATCCTAAAAGTTCTGATTCGACAGTCACCGAGTCAAGTCCCCAAATTACACATCAATGTTGTGTACAAAGGGCAAATGAAATGACTTGTATTCGGAATCAACTTTCAGATATTGAAATCAAACAGGAAAACATGATGCATCAGTTACAGGTATTAATATTCTATATACTAACATATATACATGTCTATTTGTAAGTTTTTGAGTCTTGCTGCTGCTAGATACTTTCCGATATACAGTAGCTCATTTATTCAACATTATCTTCCTTGTTTACTTTCCACTACATGATAACGCTTCAAGTGCTTTCAGTAAGAGCTGTAAGTTTTGTATGATTTTTTCATTCAACTATCACGTACTAATAACAAAATCAATAGTGTAGTGAACATTCATGTAGTTTATCACAATAAAAATATGAATATTGTAACTTTTGGCTCACGTGTGCTCACACATATTTGAAGTAATGTCCGAAATGGTTCTTGTTACACCACACGGTATGTGGTATATATTTTACTTAGCACACTTCAAATCTTTTTCAGATTTTTACAACTGGCATAATGGACGCCCTTTCTACAATCCAATCAAGAATGGTAGGCTTGGAGAATGTAATTGATAGATTATCTCAAGAATCTTTAAAAGGAGGAAGACATTCCTTTTCAGAAAACTCCAAATTTGTGAGGCAGAGCCAAAATGTCGCTTCTCCCAGGATCTCCGTATGCACTCCAAAGCCATCTTCAGAAACTAGTACTAAGCAATCAGGCTTGTTTTCGGTGAAAAGTAGTGAAAGTTTGGAAAAAAGATCATTTTCAAGGAGCCAACCGAGGATTCATGCTGGAGATAGTGTGGATATGTGTAAAAGTTACAAGGTCAAGACTGCCCCAAAAGTCAGAGAGGATAATTTGAACTGCTTAGGGGAGGATAGACAAAGCACGAGTTCTGCTCAAGTGAGAAAGAATGGTAGTATCTTTTCCTCTGCTGCCAGAACCAATGCTAGAAATGGTTGTCCTCCCGAGAGTAACACAAACTACTGGAAATGTGTGAATCGTCTTGTATGTGAAGGAGATCTAAACTCTGCATATATGGAAGCTTTGTGTTCCGGTGACGAACTTATTCTCGTTGAGCTTCTGAATAAAACCGGTCCAGTTATAGAAAGTTTATCCATGAAAACTGTCAATGTTCTTCTTAGCACTTTAGCACCGTATCTTCTGGAAGGAAAAATTTTCAATACCATAATCCCATGGCTGCAGCAGGCAAGTTCACTTACTCATAACAATATTTTATTATAATATTAAAATTTACAGTGATTTGTAAAAGAATTGAAAAATAACTAATTAAGGAAATAGTAAAACATTTTTGTTGCATCTTCGTGGCATACCTTAAATGGTATTCAAAGCATTTTAAACTAGAAGTGTGAATCATGAATGAAATGAAGATGCTAATTTTTATTTTCTTCTGATGGCTATTTGTATCTTCCATGCCATGTGAAAAATACAATGTGCAGAAACTTAACCAGTGCAGCCAAACAGGCCTGGGTTATTAAATTGTTTAACGATCATTGATAATGCAAATGTAGGATATTTTGTAGTTAATCGCTTTTACCGAATAACCTGGGAAGTATATCAGTTATTTATGTTAGTCTTTCTTGTTTTAGGTTGTTGAAATGAGCACCGTCCACGGACCAAATTGCATTGCTCTTTCAATTGAAGTCGAAGAGCAGCTTTTATATGCAATTCAAGAGGTTGTGAACTTGAATATTTTCAGCCATGCAGAAAAGAGGCGTGCAGCTGAATTAGCAATAAAATTACATCATATCTGGA

Protein sequence

>MS.gene064082.t1

MKTNNKLSSNFEMKQRVHNALNKVGDRDTHDIGTKELETILHSLTPHSISSFLSCILDIHSELKPSIRKQSLKLIATLATVYESLILPHLTKIVAAVVKCFRDPDSSVREGCIEMFAVLALKLANQGNEDKVFVLLSSPIFDALVGEQNKHVQSASAFCLAGIVQNTRNPPVSVLYGMLIRILKLLKNPHFMAKPALIELNRCIIQAGGASTQSVLLTAVGSIREGLKDTDWKTRKAASVALGQIALARASFLSSLRVSCIHSLDSSRFDKVKPVRDAVLQALKYWKMLPGHYTTEPSETGSSFKENICGGDSVDLSSTTTTTESRHRDVRLQKLNMKSTTGRIPLSVRKACQNDVGHLRHPKRDDWHVEVAVPRTHSVVEFHNEEFESSSVTKPLQTMSLDVTSMQDVGYEYGPMDDKQECSSVSNYETKFLTSHDCFVNNGLPKPNVRSKPLEEVISCNEQMYSIKMQDPKSSDSTVTESSPQITHQCCVQRANEMTCIRNQLSDIEIKQENMMHQLQIFTTGIMDALSTIQSRMVGLENVIDRLSQESLKGGRHSFSENSKFVRQSQNVASPRISVCTPKPSSETSTKQSGLFSVKSSESLEKRSFSRSQPRIHAGDSVDMCKSYKVKTAPKVREDNLNCLGEDRQSTSSAQVRKNGSIFSSAARTNARNGCPPESNTNYWKCVNRLVCEGDLNSAYMEALCSGDELILVELLNKTGPVIESLSMKTVNVLLSTLAPYLLEGKIFNTIIPWLQQVVEMSTVHGPNCIALSIEVEEQLLYAIQEVVNLNIFSHAEKRRAAELAIKLHHIW