AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06437

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06437.t1 MTR_3g095730 94.799 423 11 4 1 416 1 419 0.0 795
MS.gene06437.t1 MTR_8g092870 66.274 424 129 5 1 416 1 418 0.0 550
MS.gene06437.t1 MTR_7g106340 30.326 399 257 10 11 394 6 398 2.85e-37 140
MS.gene06437.t1 MTR_6g071340 26.540 422 268 14 11 405 3 409 2.79e-36 137
MS.gene06437.t1 MTR_5g077510 26.559 433 268 17 11 416 33 442 3.03e-36 138
MS.gene06437.t1 MTR_5g015210 29.397 398 260 7 1 398 58 434 1.45e-35 136
MS.gene06437.t1 MTR_5g048050 26.066 422 270 14 11 405 23 429 6.02e-33 129
MS.gene06437.t1 MTR_2g087350 27.436 390 267 8 11 394 4 383 1.41e-30 122
MS.gene06437.t1 MTR_1g056880 28.182 440 265 15 11 416 5 427 5.70e-29 117
MS.gene06437.t1 MTR_1g056870 27.955 440 266 15 11 416 5 427 2.14e-28 116
MS.gene06437.t1 MTR_1g017770 27.110 391 262 8 13 398 45 417 2.94e-28 115
MS.gene06437.t1 MTR_3g065080 23.515 421 281 12 11 409 34 435 5.01e-28 115
MS.gene06437.t1 MTR_4g063800 29.219 397 240 14 12 393 254 624 6.21e-28 116
MS.gene06437.t1 MTR_2g018010 26.118 425 255 13 1 396 280 674 9.58e-27 113
MS.gene06437.t1 MTR_4g485520 27.348 362 217 13 10 351 102 437 1.39e-26 111
MS.gene06437.t1 MTR_4g485520 27.348 362 217 13 10 351 270 605 3.71e-26 111
MS.gene06437.t1 MTR_7g059405 25.743 404 248 12 13 397 264 634 4.68e-24 105
MS.gene06437.t1 MTR_1g056840 26.818 440 245 16 11 416 5 401 9.27e-24 102
MS.gene06437.t1 MTR_4g085720 26.119 402 266 12 7 396 8 390 4.81e-23 100
MS.gene06437.t1 MTR_3g096370 29.787 282 175 8 11 279 8 279 9.30e-23 99.8
MS.gene06437.t1 MTR_4g051515 25.301 415 279 14 11 406 4 406 1.01e-22 99.8
MS.gene06437.t1 MTR_1g094215 27.733 375 222 13 13 363 64 413 1.56e-22 99.4
MS.gene06437.t1 MTR_1g094215 27.733 375 222 13 13 363 247 596 3.46e-22 99.4
MS.gene06437.t1 MTR_1g056910 25.310 403 272 12 11 400 4 390 2.99e-21 95.5
MS.gene06437.t1 MTR_7g078330 26.000 350 228 13 11 351 272 599 1.59e-20 94.4
MS.gene06437.t1 MTR_4g107010 27.348 362 217 14 14 351 281 620 1.08e-19 92.0
MS.gene06437.t1 MTR_4g028960 49.275 69 35 0 11 79 278 346 5.80e-19 89.7
MS.gene06437.t1 MTR_3g078160 23.775 408 260 12 14 396 276 657 1.65e-17 85.1
MS.gene06437.t1 MTR_3g078160 23.775 408 260 12 14 396 276 657 1.86e-17 85.1
MS.gene06437.t1 MTR_5g083030 24.267 375 229 12 9 351 289 640 2.27e-17 84.7
MS.gene06437.t1 MTR_4g091880 53.623 69 31 1 13 80 5 73 3.18e-17 83.2
MS.gene06437.t1 MTR_4g091880 53.623 69 31 1 13 80 5 73 3.31e-17 82.8
MS.gene06437.t1 MTR_7g053260 44.286 70 39 0 11 80 76 145 8.29e-16 79.3
MS.gene06437.t1 MTR_1g069845 40.541 74 44 0 6 79 117 190 1.14e-15 79.3
MS.gene06437.t1 MTR_7g097020 43.662 71 40 0 11 81 239 309 2.05e-15 79.0
MS.gene06437.t1 MTR_1g069845 42.029 69 40 0 11 79 243 311 2.36e-15 78.6
MS.gene06437.t1 MTR_1g069845 42.029 69 40 0 11 79 239 307 2.37e-15 78.6
MS.gene06437.t1 MTR_7g117890 24.688 320 199 10 17 329 259 543 3.23e-15 78.6
MS.gene06437.t1 MTR_5g034440 50.769 65 32 0 17 81 284 348 9.70e-15 76.6
MS.gene06437.t1 MTR_3g078160 48.438 64 33 0 14 77 276 339 8.27e-14 73.6
MS.gene06437.t1 MTR_3g085610 41.176 68 40 0 14 81 281 348 1.20e-13 73.2
MS.gene06437.t1 MTR_7g116600 48.485 66 34 0 14 79 79 144 1.27e-13 72.8
MS.gene06437.t1 MTR_1g093965 33.099 142 72 3 26 167 1 119 1.81e-13 69.3
MS.gene06437.t1 MTR_3g466220 39.535 86 51 1 11 95 231 316 6.23e-13 71.2
MS.gene06437.t1 MTR_3g466220 39.535 86 51 1 11 95 210 295 6.67e-13 70.9
MS.gene06437.t1 MTR_1g093995 32.394 142 73 3 26 167 1 119 1.20e-12 67.0
MS.gene06437.t1 MTR_2g011140 50.000 60 30 0 17 76 19 78 2.08e-12 68.6
MS.gene06437.t1 MTR_7g077780 42.029 69 40 0 14 82 827 895 2.98e-12 68.9
MS.gene06437.t1 MTR_1g079450 40.845 71 42 0 9 79 59 129 5.14e-12 67.8
MS.gene06437.t1 MTR_8g077205 43.478 69 39 0 11 79 161 229 7.73e-12 67.4
MS.gene06437.t1 MTR_8g077205 43.478 69 39 0 11 79 273 341 8.55e-12 67.4
MS.gene06437.t1 MTR_8g080280 38.235 68 42 0 14 81 283 350 1.13e-11 67.0
MS.gene06437.t1 MTR_3g008270 45.455 66 35 1 14 79 731 795 1.56e-11 66.6
MS.gene06437.t1 MTR_5g020570 39.130 69 42 0 11 79 271 339 1.72e-11 66.6
MS.gene06437.t1 MTR_1g100820 43.284 67 38 0 13 79 648 714 1.78e-11 66.6
MS.gene06437.t1 MTR_1g100820 43.284 67 38 0 13 79 646 712 1.89e-11 66.2
MS.gene06437.t1 MTR_5g020570 39.130 69 42 0 11 79 286 354 2.09e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06437.t1 AT5G64660 51.402 428 177 7 8 416 5 420 2.37e-139 405
MS.gene06437.t1 AT5G09800 51.781 421 181 8 5 416 2 409 4.70e-130 380
MS.gene06437.t1 AT3G18710 49.289 422 182 13 11 416 10 415 5.02e-123 363
MS.gene06437.t1 AT2G35930 26.972 393 278 6 6 395 5 391 9.80e-36 136
MS.gene06437.t1 AT3G52450 27.143 420 268 10 7 394 1 414 6.98e-34 131
MS.gene06437.t1 AT1G66160 24.685 397 264 10 11 395 31 404 6.01e-33 129
MS.gene06437.t1 AT3G19380 27.320 388 256 10 7 381 8 382 3.20e-32 126
MS.gene06437.t1 AT3G49810 26.943 386 256 8 13 394 64 427 5.63e-29 118
MS.gene06437.t1 AT1G49780 26.824 425 285 9 7 416 8 421 2.90e-27 112
MS.gene06437.t1 AT3G46510 28.249 354 216 12 13 351 256 586 3.19e-26 111
MS.gene06437.t1 AT5G37490 25.799 407 266 14 11 400 29 416 1.02e-25 108
MS.gene06437.t1 AT3G54850 27.778 360 211 13 13 351 248 579 5.47e-25 107
MS.gene06437.t1 AT1G23030 25.980 408 251 17 11 402 239 611 2.64e-24 105
MS.gene06437.t1 AT2G28830 26.034 411 251 14 14 400 185 566 6.46e-24 104
MS.gene06437.t1 AT1G66160 22.922 397 255 11 11 395 31 388 4.04e-23 100
MS.gene06437.t1 AT1G71020 29.236 301 173 11 11 291 93 373 2.04e-22 99.4
MS.gene06437.t1 AT1G71020 29.236 301 173 11 11 291 241 521 4.03e-22 99.4
MS.gene06437.t1 AT1G29340 24.943 437 262 14 1 405 293 695 6.38e-21 95.9
MS.gene06437.t1 AT4G21350 24.936 393 257 10 9 392 1 364 1.22e-20 93.2
MS.gene06437.t1 AT5G42340 28.159 277 175 10 11 280 288 547 6.71e-20 92.4
MS.gene06437.t1 AT3G11840 23.310 429 273 10 11 393 8 426 2.50e-19 90.1
MS.gene06437.t1 AT5G65920 53.731 67 31 0 13 79 60 126 6.87e-18 85.9
MS.gene06437.t1 AT5G65920 26.904 197 139 2 198 394 232 423 1.56e-11 66.2
MS.gene06437.t1 AT5G65920 53.731 67 31 0 13 79 60 126 6.87e-18 85.9
MS.gene06437.t1 AT5G65920 26.904 197 139 2 198 394 232 423 1.56e-11 66.2
MS.gene06437.t1 AT5G01830 50.746 67 33 0 13 79 274 340 1.61e-17 85.1
MS.gene06437.t1 AT3G54790 40.278 72 43 0 11 82 200 271 1.31e-16 82.4
MS.gene06437.t1 AT3G54790 40.278 72 43 0 11 82 236 307 1.90e-16 82.0
MS.gene06437.t1 AT3G54790 40.278 72 43 0 11 82 236 307 1.90e-16 82.0
MS.gene06437.t1 AT3G07360 43.478 69 39 0 11 79 72 140 2.75e-15 77.8
MS.gene06437.t1 AT1G24330 26.471 306 176 11 14 308 276 543 7.74e-14 73.9
MS.gene06437.t1 AT1G24330 26.471 306 176 11 14 308 276 543 7.74e-14 73.9
MS.gene06437.t1 AT1G67530 44.118 68 38 0 14 81 273 340 8.37e-14 73.9
MS.gene06437.t1 AT1G67530 44.118 68 38 0 14 81 273 340 8.37e-14 73.9
MS.gene06437.t1 AT1G67530 44.118 68 38 0 14 81 273 340 8.37e-14 73.9
MS.gene06437.t1 AT1G10560 26.174 298 184 10 19 296 294 575 9.49e-14 73.6
MS.gene06437.t1 AT1G67530 44.118 68 38 0 14 81 273 340 9.81e-14 73.6
MS.gene06437.t1 AT1G01660 43.939 66 37 0 14 79 499 564 2.41e-13 72.0
MS.gene06437.t1 AT1G01660 43.939 66 37 0 14 79 498 563 2.45e-13 72.0
MS.gene06437.t1 AT1G27910 42.647 68 39 0 14 81 280 347 2.37e-12 69.3
MS.gene06437.t1 AT5G18330 23.580 352 244 10 11 355 63 396 4.61e-12 67.8
MS.gene06437.t1 AT2G23140 44.444 63 35 0 17 79 237 299 2.25e-11 66.2
MS.gene06437.t1 AT2G23140 44.444 63 35 0 17 79 234 296 2.28e-11 66.2
MS.gene06437.t1 AT2G23140 44.444 63 35 0 17 79 234 296 2.28e-11 66.2
MS.gene06437.t1 AT2G23140 44.444 63 35 0 17 79 45 107 2.97e-11 65.9
MS.gene06437.t1 AT2G23140 44.444 63 35 0 17 79 45 107 2.97e-11 65.9

Find 88 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCATAATATGTGAAGTTT+TGG 0.276591 3.2:-79944975 None:intergenic
AAACAGAAACTGGTGAAAAT+TGG 0.295758 3.2:+79944560 MS.gene06437:CDS
GTCTAACCAGCGTTGGATAC+TGG 0.313560 3.2:-79943874 None:intergenic
AACGGTGTTAGGTTTGGTTC+TGG 0.333260 3.2:+79944244 MS.gene06437:CDS
TTCATAACGTCGAGTGAGAT+TGG 0.354545 3.2:-79943810 None:intergenic
GAACAGACTTTAACGGTGTT+AGG 0.356980 3.2:+79944233 MS.gene06437:CDS
ACACCGGTGCAAAGACTAAC+AGG 0.363281 3.2:-79943837 None:intergenic
ATTTCTTGAACAGACTTTAA+CGG 0.373579 3.2:+79944226 MS.gene06437:CDS
ACGGTTAGGTACAAAATCTT+TGG 0.375445 3.2:-79943940 None:intergenic
AGTTTCTGTTTGTTCCGTTT+CGG 0.376803 3.2:-79944548 None:intergenic
TAAACCGAACCGGTTTAAAC+CGG 0.401538 3.2:-79944084 None:intergenic
GACTTTAACGGTGTTAGGTT+TGG 0.408394 3.2:+79944238 MS.gene06437:CDS
GAACCGAATCGGTCCAGATC+TGG 0.410843 3.2:-79943980 None:intergenic
TCAAGAAAACTAACCATTAA+CGG 0.410858 3.2:-79944182 None:intergenic
GAAACGGAACAAACAGAAAC+TGG 0.418763 3.2:+79944550 MS.gene06437:CDS
CTAATTTCGCGAGAAAAGTT+CGG 0.427400 3.2:-79944148 None:intergenic
GAAGCAGTTACGATGGCTAA+TGG 0.436021 3.2:+79944833 MS.gene06437:CDS
GTGTGAAGACGCGGGGTTTG+TGG 0.454044 3.2:+79944706 MS.gene06437:CDS
TAGCCTCATCCGGTTTAAAC+CGG 0.457213 3.2:+79944075 MS.gene06437:CDS
GGGAAGTATTTGCATGGTGG+CGG 0.461122 3.2:-79943916 None:intergenic
CGAAGATAGATTCAGCAATT+CGG 0.463703 3.2:-79944465 None:intergenic
TCATAACGTCGAGTGAGATT+GGG 0.470373 3.2:-79943809 None:intergenic
CTTTCGTGATTAAACCGAAC+CGG 0.470487 3.2:-79944094 None:intergenic
CATCCAGATCTGGACCGATT+CGG 0.478094 3.2:+79943977 MS.gene06437:CDS
GGTTCATCACCGGGTCGAAC+CGG 0.478104 3.2:+79943998 MS.gene06437:CDS
TACATAGTCTCATCCAGATC+TGG 0.479419 3.2:+79943967 MS.gene06437:CDS
CTAAGTCGGTGATGGTTTGA+AGG 0.487003 3.2:-79944055 None:intergenic
GGAAGTATTTGCATGGTGGC+GGG 0.489867 3.2:-79943915 None:intergenic
GGACCGATTCGGTTCATCAC+CGG 0.498704 3.2:+79943988 MS.gene06437:CDS
GAAGGTAACCGTGGTGGAGA+AGG 0.500974 3.2:+79944631 MS.gene06437:CDS
TGAGATTGGGCATTTGAAGA+AGG 0.502277 3.2:-79943796 None:intergenic
GATTGGGCATTTGAAGAAGG+TGG 0.504488 3.2:-79943793 None:intergenic
GACCGATTCGGTTCATCACC+GGG 0.508430 3.2:+79943989 MS.gene06437:CDS
TTGAAGAACCTTGTGTTGAA+AGG 0.511575 3.2:+79944290 MS.gene06437:CDS
TCATCCGGTTTAAACCGGTT+CGG 0.515676 3.2:+79944080 MS.gene06437:CDS
CGGCGATACTGAATAAGATT+CGG 0.518377 3.2:+79944729 MS.gene06437:CDS
GGTGGAGAAGGCGTTGAAGC+TGG 0.521064 3.2:+79944643 MS.gene06437:CDS
ATCAGCTTCGAATCATTCTC+CGG 0.528248 3.2:-79944488 None:intergenic
GTTAGGTACAAAATCTTTGG+TGG 0.531775 3.2:-79943937 None:intergenic
CCAATCTCCATAAATCAAAA+CGG 0.532788 3.2:-79944995 None:intergenic
TGTTCTTTCCTTTCAACACA+AGG 0.541607 3.2:-79944298 None:intergenic
AGACTATGTAGAGTACGGTT+AGG 0.544129 3.2:-79943954 None:intergenic
ATCACCGACTTAGCCTCATC+CGG 0.544356 3.2:+79944065 MS.gene06437:CDS
AACAACTCTTTCTCTAACCA+TGG 0.546792 3.2:-79943751 None:intergenic
TCCCCTGTTAGTCTTTGCAC+CGG 0.548826 3.2:+79943834 MS.gene06437:CDS
TAGCAATCTCAAAACCGAAA+CGG 0.555669 3.2:+79944534 MS.gene06437:CDS
ACAGCGTCTTCAACGAGTGA+AGG 0.557046 3.2:+79944671 MS.gene06437:CDS
GAGAAAAGTTCGGTTCTGAT+CGG 0.560096 3.2:-79944138 None:intergenic
GTACACATTTGTCGAACTTG+TGG 0.562241 3.2:-79944896 None:intergenic
GACCCGGTGATGAACCGAAT+CGG 0.567434 3.2:-79943991 None:intergenic
AAGAGAGATGTGTGAAGACG+CGG 0.568054 3.2:+79944697 MS.gene06437:CDS
AGAGAGATGTGTGAAGACGC+GGG 0.574075 3.2:+79944698 MS.gene06437:CDS
ATTGGGCATTTGAAGAAGGT+GGG 0.577047 3.2:-79943792 None:intergenic
TTGGATACTGGAACGGTCGT+AGG 0.577907 3.2:-79943862 None:intergenic
AGCGATGAATTTCAAAACCC+TGG 0.578181 3.2:-79944393 None:intergenic
CAGCGTCTTCAACGAGTGAA+GGG 0.578889 3.2:+79944672 MS.gene06437:CDS
GGATGAGACTATGTAGAGTA+CGG 0.580632 3.2:-79943959 None:intergenic
ATTGCTGAATCTATCTTCGC+CGG 0.591644 3.2:+79944469 MS.gene06437:CDS
TACCGTCGTCTAACCAGCGT+TGG 0.592830 3.2:-79943881 None:intergenic
TGTTCATTAGAAAGAACTGT+AGG 0.593385 3.2:-79944029 None:intergenic
GAACCGGTTTAAACCGGATG+AGG 0.595940 3.2:-79944078 None:intergenic
GTGAAACGACCGGTTCGACC+CGG 0.613348 3.2:-79944007 None:intergenic
GGATGAGGCTAAGTCGGTGA+TGG 0.616650 3.2:-79944063 None:intergenic
TTAGGTACAAAATCTTTGGT+GGG 0.617972 3.2:-79943936 None:intergenic
TAAACCGGATGAGGCTAAGT+CGG 0.629808 3.2:-79944069 None:intergenic
ACAAGTTCGACAAATGTGTA+CGG 0.630403 3.2:+79944898 MS.gene06437:CDS
TTCAAGAATCACAACCACCA+GGG 0.633736 3.2:+79944376 MS.gene06437:CDS
TGAAGACGCGGGGTTTGTGG+CGG 0.634262 3.2:+79944709 MS.gene06437:CDS
GGAACGGTCGTAGGTGACAC+CGG 0.634285 3.2:-79943853 None:intergenic
TTTGGTGGGAAGTATTTGCA+TGG 0.634607 3.2:-79943922 None:intergenic
AGAGTCTAATACGAGCGTGA+AGG 0.640411 3.2:+79944613 MS.gene06437:CDS
GAATGTATCGAACGTTGCGA+CGG 0.642403 3.2:+79944751 MS.gene06437:CDS
ATTCAAGAATCACAACCACC+AGG 0.646164 3.2:+79944375 MS.gene06437:CDS
AGCACGCAGTAACGACGCTG+TGG 0.651564 3.2:+79944774 MS.gene06437:CDS
GAGAGATGTGTGAAGACGCG+GGG 0.656707 3.2:+79944699 MS.gene06437:CDS
GGTGGGAAGTATTTGCATGG+TGG 0.659091 3.2:-79943919 None:intergenic
GGAGAAGGCGTTGAAGCTGG+TGG 0.660376 3.2:+79944646 MS.gene06437:CDS
AGCACAAGAAGCAGTTACGA+TGG 0.668634 3.2:+79944826 MS.gene06437:CDS
ACCAGCGTTGGATACTGGAA+CGG 0.669208 3.2:-79943869 None:intergenic
CACCGGTGCAAAGACTAACA+GGG 0.672559 3.2:-79943836 None:intergenic
AGAACTGTAGGTGAAACGAC+CGG 0.674492 3.2:-79944017 None:intergenic
ACCGTTCCAGTATCCAACGC+TGG 0.677562 3.2:+79943868 MS.gene06437:CDS
GAGCGTGAAGGTAACCGTGG+TGG 0.681535 3.2:+79944625 MS.gene06437:CDS
ACCGGTGCAAAGACTAACAG+GGG 0.687573 3.2:-79943835 None:intergenic
CTTCAACGCCTTCTCCACCA+CGG 0.688331 3.2:-79944639 None:intergenic
GATGAATTTCAAAACCCTGG+TGG 0.695060 3.2:-79944390 None:intergenic
TACGAGCGTGAAGGTAACCG+TGG 0.695428 3.2:+79944622 MS.gene06437:CDS
ATCCAACGCTGGTTAGACGA+CGG 0.729186 3.2:+79943879 MS.gene06437:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTTCTTGAACAGACTTTAA+CGG + chr3.2:79944226-79944245 MS.gene06437:CDS 25.0%
! GAACAAAAACAAAAAATGCT+TGG + chr3.2:79944316-79944335 MS.gene06437:CDS 25.0%
! TCAAGAAAACTAACCATTAA+CGG - chr3.2:79944185-79944204 None:intergenic 25.0%
!!! ATGGTTCTTGTTTTACAAAA+AGG + chr3.2:79944344-79944363 MS.gene06437:CDS 25.0%
AAACAGAAACTGGTGAAAAT+TGG + chr3.2:79944560-79944579 MS.gene06437:CDS 30.0%
CAAAAAATGCTTGGATTCAA+TGG + chr3.2:79944325-79944344 MS.gene06437:CDS 30.0%
GAAAAAATTGAAGATCGTGA+AGG + chr3.2:79944266-79944285 MS.gene06437:CDS 30.0%
TGTTCATTAGAAAGAACTGT+AGG - chr3.2:79944032-79944051 None:intergenic 30.0%
TTAGGTACAAAATCTTTGGT+GGG - chr3.2:79943939-79943958 None:intergenic 30.0%
!! CGGATTTGCTTAAGATTTTT+CGG + chr3.2:79944918-79944937 MS.gene06437:CDS 30.0%
!! GGATTTGCTTAAGATTTTTC+GGG + chr3.2:79944919-79944938 MS.gene06437:CDS 30.0%
ACAAGTTCGACAAATGTGTA+CGG + chr3.2:79944898-79944917 MS.gene06437:CDS 35.0%
ACGGTTAGGTACAAAATCTT+TGG - chr3.2:79943943-79943962 None:intergenic 35.0%
AGTTTCTGTTTGTTCCGTTT+CGG - chr3.2:79944551-79944570 None:intergenic 35.0%
CGAAGATAGATTCAGCAATT+CGG - chr3.2:79944468-79944487 None:intergenic 35.0%
CTAATTTCGCGAGAAAAGTT+CGG - chr3.2:79944151-79944170 None:intergenic 35.0%
GTTAGGTACAAAATCTTTGG+TGG - chr3.2:79943940-79943959 None:intergenic 35.0%
TAGCAATCTCAAAACCGAAA+CGG + chr3.2:79944534-79944553 MS.gene06437:CDS 35.0%
TGTTCTTTCCTTTCAACACA+AGG - chr3.2:79944301-79944320 None:intergenic 35.0%
TTGAAGAACCTTGTGTTGAA+AGG + chr3.2:79944290-79944309 MS.gene06437:CDS 35.0%
! ACTTTTCTCGCGAAATTAGA+CGG + chr3.2:79944152-79944171 MS.gene06437:CDS 35.0%
! CGGCATAATATGTGAAGTTT+TGG - chr3.2:79944978-79944997 None:intergenic 35.0%
!!! AGACGGTTTTATTCCGTTAA+TGG + chr3.2:79944169-79944188 MS.gene06437:CDS 35.0%
AGACTATGTAGAGTACGGTT+AGG - chr3.2:79943957-79943976 None:intergenic 40.0%
AGCGATGAATTTCAAAACCC+TGG - chr3.2:79944396-79944415 None:intergenic 40.0%
ATCAGCTTCGAATCATTCTC+CGG - chr3.2:79944491-79944510 None:intergenic 40.0%
ATTCAAGAATCACAACCACC+AGG + chr3.2:79944375-79944394 MS.gene06437:CDS 40.0%
ATTGCTGAATCTATCTTCGC+CGG + chr3.2:79944469-79944488 MS.gene06437:CDS 40.0%
ATTGGGCATTTGAAGAAGGT+GGG - chr3.2:79943795-79943814 None:intergenic 40.0%
CGGCGATACTGAATAAGATT+CGG + chr3.2:79944729-79944748 MS.gene06437:CDS 40.0%
CTTTCGTGATTAAACCGAAC+CGG - chr3.2:79944097-79944116 None:intergenic 40.0%
GAAACGGAACAAACAGAAAC+TGG + chr3.2:79944550-79944569 MS.gene06437:CDS 40.0%
GAACAGACTTTAACGGTGTT+AGG + chr3.2:79944233-79944252 MS.gene06437:CDS 40.0%
GATGAATTTCAAAACCCTGG+TGG - chr3.2:79944393-79944412 None:intergenic 40.0%
GGATGAGACTATGTAGAGTA+CGG - chr3.2:79943962-79943981 None:intergenic 40.0%
GTACACATTTGTCGAACTTG+TGG - chr3.2:79944899-79944918 None:intergenic 40.0%
TACATAGTCTCATCCAGATC+TGG + chr3.2:79943967-79943986 MS.gene06437:CDS 40.0%
TCATAACGTCGAGTGAGATT+GGG - chr3.2:79943812-79943831 None:intergenic 40.0%
TGAGATTGGGCATTTGAAGA+AGG - chr3.2:79943799-79943818 None:intergenic 40.0%
TTCAAGAATCACAACCACCA+GGG + chr3.2:79944376-79944395 MS.gene06437:CDS 40.0%
TTCATAACGTCGAGTGAGAT+TGG - chr3.2:79943813-79943832 None:intergenic 40.0%
! GACTTTAACGGTGTTAGGTT+TGG + chr3.2:79944238-79944257 MS.gene06437:CDS 40.0%
! GAGAAAAGTTCGGTTCTGAT+CGG - chr3.2:79944141-79944160 None:intergenic 40.0%
! TAAACCGAACCGGTTTAAAC+CGG - chr3.2:79944087-79944106 None:intergenic 40.0%
!! TTTGGTGGGAAGTATTTGCA+TGG - chr3.2:79943925-79943944 None:intergenic 40.0%
AAGAGAGATGTGTGAAGACG+CGG + chr3.2:79944697-79944716 MS.gene06437:CDS 45.0%
AGAACTGTAGGTGAAACGAC+CGG - chr3.2:79944020-79944039 None:intergenic 45.0%
AGAGTCTAATACGAGCGTGA+AGG + chr3.2:79944613-79944632 MS.gene06437:CDS 45.0%
AGCACAAGAAGCAGTTACGA+TGG + chr3.2:79944826-79944845 MS.gene06437:CDS 45.0%
GAAGCAGTTACGATGGCTAA+TGG + chr3.2:79944833-79944852 MS.gene06437:CDS 45.0%
GAATGTATCGAACGTTGCGA+CGG + chr3.2:79944751-79944770 MS.gene06437:CDS 45.0%
GATTGGGCATTTGAAGAAGG+TGG - chr3.2:79943796-79943815 None:intergenic 45.0%
TAAACCGGATGAGGCTAAGT+CGG - chr3.2:79944072-79944091 None:intergenic 45.0%
TAGCCTCATCCGGTTTAAAC+CGG + chr3.2:79944075-79944094 MS.gene06437:CDS 45.0%
TCATCCGGTTTAAACCGGTT+CGG + chr3.2:79944080-79944099 MS.gene06437:CDS 45.0%
! AACGGTGTTAGGTTTGGTTC+TGG + chr3.2:79944244-79944263 MS.gene06437:CDS 45.0%
! CTAAGTCGGTGATGGTTTGA+AGG - chr3.2:79944058-79944077 None:intergenic 45.0%
ACACCGGTGCAAAGACTAAC+AGG - chr3.2:79943840-79943859 None:intergenic 50.0%
ACAGCGTCTTCAACGAGTGA+AGG + chr3.2:79944671-79944690 MS.gene06437:CDS 50.0%
ACCGGTGCAAAGACTAACAG+GGG - chr3.2:79943838-79943857 None:intergenic 50.0%
AGAGAGATGTGTGAAGACGC+GGG + chr3.2:79944698-79944717 MS.gene06437:CDS 50.0%
CACCGGTGCAAAGACTAACA+GGG - chr3.2:79943839-79943858 None:intergenic 50.0%
CAGCGTCTTCAACGAGTGAA+GGG + chr3.2:79944672-79944691 MS.gene06437:CDS 50.0%
CATCCAGATCTGGACCGATT+CGG + chr3.2:79943977-79943996 MS.gene06437:CDS 50.0%
TTGGATACTGGAACGGTCGT+AGG - chr3.2:79943865-79943884 None:intergenic 50.0%
! ACCAGCGTTGGATACTGGAA+CGG - chr3.2:79943872-79943891 None:intergenic 50.0%
! ATCCAACGCTGGTTAGACGA+CGG + chr3.2:79943879-79943898 MS.gene06437:CDS 50.0%
! GAACCGGTTTAAACCGGATG+AGG - chr3.2:79944081-79944100 None:intergenic 50.0%
! GTCTAACCAGCGTTGGATAC+TGG - chr3.2:79943877-79943896 None:intergenic 50.0%
!! ATCACCGACTTAGCCTCATC+CGG + chr3.2:79944065-79944084 MS.gene06437:CDS 50.0%
!! GGAAGTATTTGCATGGTGGC+GGG - chr3.2:79943918-79943937 None:intergenic 50.0%
!! GGGAAGTATTTGCATGGTGG+CGG - chr3.2:79943919-79943938 None:intergenic 50.0%
!! GGTGGGAAGTATTTGCATGG+TGG - chr3.2:79943922-79943941 None:intergenic 50.0%
!! TCCCCTGTTAGTCTTTGCAC+CGG + chr3.2:79943834-79943853 MS.gene06437:CDS 50.0%
ACCGTTCCAGTATCCAACGC+TGG + chr3.2:79943868-79943887 MS.gene06437:CDS 55.0%
CTTCAACGCCTTCTCCACCA+CGG - chr3.2:79944642-79944661 None:intergenic 55.0%
GAACCGAATCGGTCCAGATC+TGG - chr3.2:79943983-79944002 None:intergenic 55.0%
GACCCGGTGATGAACCGAAT+CGG - chr3.2:79943994-79944013 None:intergenic 55.0%
GAGAGATGTGTGAAGACGCG+GGG + chr3.2:79944699-79944718 MS.gene06437:CDS 55.0%
GGATGAGGCTAAGTCGGTGA+TGG - chr3.2:79944066-79944085 None:intergenic 55.0%
TACCGTCGTCTAACCAGCGT+TGG - chr3.2:79943884-79943903 None:intergenic 55.0%
TACGAGCGTGAAGGTAACCG+TGG + chr3.2:79944622-79944641 MS.gene06437:CDS 55.0%
! GAAGGTAACCGTGGTGGAGA+AGG + chr3.2:79944631-79944650 MS.gene06437:CDS 55.0%
!! GACCGATTCGGTTCATCACC+GGG + chr3.2:79943989-79944008 MS.gene06437:CDS 55.0%
!! GGACCGATTCGGTTCATCAC+CGG + chr3.2:79943988-79944007 MS.gene06437:CDS 55.0%
AGCACGCAGTAACGACGCTG+TGG + chr3.2:79944774-79944793 MS.gene06437:CDS 60.0%
GAGCGTGAAGGTAACCGTGG+TGG + chr3.2:79944625-79944644 MS.gene06437:CDS 60.0%
GGAACGGTCGTAGGTGACAC+CGG - chr3.2:79943856-79943875 None:intergenic 60.0%
GGTTCATCACCGGGTCGAAC+CGG + chr3.2:79943998-79944017 MS.gene06437:CDS 60.0%
GTGTGAAGACGCGGGGTTTG+TGG + chr3.2:79944706-79944725 MS.gene06437:CDS 60.0%
TGAAGACGCGGGGTTTGTGG+CGG + chr3.2:79944709-79944728 MS.gene06437:CDS 60.0%
!! GGAGAAGGCGTTGAAGCTGG+TGG + chr3.2:79944646-79944665 MS.gene06437:CDS 60.0%
!! GGTGGAGAAGGCGTTGAAGC+TGG + chr3.2:79944643-79944662 MS.gene06437:CDS 60.0%
!! GTGAAACGACCGGTTCGACC+CGG - chr3.2:79944010-79944029 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 79943753 79945003 79943753 ID=MS.gene06437
chr3.2 mRNA 79943753 79945003 79943753 ID=MS.gene06437.t1;Parent=MS.gene06437
chr3.2 exon 79943753 79945003 79943753 ID=MS.gene06437.t1.exon1;Parent=MS.gene06437.t1
chr3.2 CDS 79943753 79945003 79943753 ID=cds.MS.gene06437.t1;Parent=MS.gene06437.t1
Gene Sequence

>MS.gene06437

ATGGTTAGAGAAAGAGTTGTTGATCTATGCATCACTGTTCCCACCTTCTTCAAATGCCCAATCTCACTCGACGTTATGAAATCCCCTGTTAGTCTTTGCACCGGTGTCACCTACGACCGTTCCAGTATCCAACGCTGGTTAGACGACGGTAACAACACGTGTCCCGCCACCATGCAAATACTTCCCACCAAAGATTTTGTACCTAACCGTACTCTACATAGTCTCATCCAGATCTGGACCGATTCGGTTCATCACCGGGTCGAACCGGTCGTTTCACCTACAGTTCTTTCTAATGAACAACTCCTTCAAACCATCACCGACTTAGCCTCATCCGGTTTAAACCGGTTCGGTTTAATCACGAAAGTCATTCGTTTCGCTCAAGATTCCGATCAGAACCGAACTTTTCTCGCGAAATTAGACGGTTTTATTCCGTTAATGGTTAGTTTTCTTGACAATGTTGACAAAAGCATTGAATTTCTTGAACAGACTTTAACGGTGTTAGGTTTGGTTCTGGAAAAAATTGAAGATCGTGAAGGATTGAAGAACCTTGTGTTGAAAGGAAAGAACAAAAACAAAAAATGCTTGGATTCAATGGTTCTTGTTTTACAAAAAGGAAGCAACAATTCAAGAATCACAACCACCAGGGTTTTGAAATTCATCGCTATAGACGCTGAATCAGAGCTTCTAATAGCTGAGAACGAAGCTTTGTTAACCGAATTGCTGAATCTATCTTCGCCGGAGAATGATTCGAAGCTGATTGAAAATTGCTTATCGTGCTTAATAGCAATCTCAAAACCGAAACGGAACAAACAGAAACTGGTGAAAATTGGAGTAATGAAGATTTTGTCAAAGTTACTAAAAGAGTCTAATACGAGCGTGAAGGTAACCGTGGTGGAGAAGGCGTTGAAGCTGGTGGAAACAGCGTCTTCAACGAGTGAAGGGAGAAGAGAGATGTGTGAAGACGCGGGGTTTGTGGCGGCGATACTGAATAAGATTCGGAATGTATCGAACGTTGCGACGGAGCACGCAGTAACGACGCTGTGGAGTGTTTGTTATCTGTTTCGCGATCAGAAAGCACAAGAAGCAGTTACGATGGCTAATGGATTAACGAAGATATTGTTGCTAATACAGAGTAATTGTTCTCCACAAGTTCGACAAATGTGTACGGATTTGCTTAAGATTTTTCGGGTTAATTCTAAATCGTGTCTTTCTTCTTATGATACCAAAACTTCACATATTATGCCGTTTTGA
Protein sequence

>MS.gene06437.t1

MVRERVVDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILPTKDFVPNRTLHSLIQIWTDSVHHRVEPVVSPTVLSNEQLLQTITDLASSGLNRFGLITKVIRFAQDSDQNRTFLAKLDGFIPLMVSFLDNVDKSIEFLEQTLTVLGLVLEKIEDREGLKNLVLKGKNKNKKCLDSMVLVLQKGSNNSRITTTRVLKFIAIDAESELLIAENEALLTELLNLSSPENDSKLIENCLSCLIAISKPKRNKQKLVKIGVMKILSKLLKESNTSVKVTVVEKALKLVETASSTSEGRREMCEDAGFVAAILNKIRNVSNVATEHAVTTLWSVCYLFRDQKAQEAVTMANGLTKILLLIQSNCSPQVRQMCTDLLKIFRVNSKSCLSSYDTKTSHIMPF