Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064422.t1 | XP_013462298.1 | 96.9 | 191 | 6 | 0 | 1 | 191 | 25 | 215 | 1.30E-101 | 379 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064422.t1 | Q5QMM3 | 69.1 | 152 | 44 | 3 | 1 | 151 | 35 | 184 | 1.8e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064422.t1 | A0A072V4R9 | 96.9 | 191 | 6 | 0 | 1 | 191 | 25 | 215 | 9.2e-102 | 379.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064422.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene064422 | 0.804343 | 2.26E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene064422 | 0.826293 | 2.94E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene064422 | 0.817102 | 3.92E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene064422 | 0.803797 | 2.94E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene064422 | 0.823096 | 1.67E-53 | -1.69E-46 |
| MS.gene050026 | MS.gene064422 | 0.802462 | 5.55E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene064422 | 0.832498 | 9.14E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene064422 | 0.828624 | 8.11E-55 | -1.69E-46 |
| MS.gene050562 | MS.gene064422 | 0.826419 | 2.74E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene064422 | 0.805862 | 1.09E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene064422 | 0.842436 | 2.59E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene064422 | 0.811238 | 7.74E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene064422 | 0.878538 | 2.59E-69 | -1.69E-46 |
| MS.gene052519 | MS.gene064422 | 0.802728 | 4.89E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene064422 | 0.821555 | 3.79E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene064422 | 0.833158 | 6.26E-56 | -1.69E-46 |
| MS.gene052616 | MS.gene064422 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene064422 | 0.841825 | 3.76E-58 | -1.69E-46 |
| MS.gene05433 | MS.gene064422 | 0.80024 | 1.58E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene064422 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene064422 | 0.819932 | 8.96E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene064422 | -0.801239 | 9.89E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene064422 | 0.80761 | 4.65E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene064422 | 0.836203 | 1.07E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene064422 | 0.814512 | 1.48E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene064422 | 0.818408 | 1.99E-52 | -1.69E-46 |
| MS.gene059015 | MS.gene064422 | 0.817934 | 2.55E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene064422 | 0.81052 | 1.11E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064422.t1 | MTR_3g115620 | 96.859 | 191 | 6 | 0 | 1 | 191 | 25 | 215 | 2.34e-141 | 392 |
| MS.gene064422.t1 | MTR_1g115315 | 69.178 | 146 | 42 | 2 | 1 | 146 | 30 | 172 | 2.62e-68 | 209 |
| MS.gene064422.t1 | MTR_1g115315 | 71.329 | 143 | 37 | 3 | 1 | 143 | 30 | 168 | 3.57e-68 | 209 |
| MS.gene064422.t1 | MTR_7g023810 | 46.821 | 173 | 66 | 4 | 1 | 170 | 27 | 176 | 7.50e-42 | 139 |
| MS.gene064422.t1 | MTR_2g015000 | 37.363 | 91 | 56 | 1 | 28 | 117 | 24 | 114 | 2.75e-15 | 73.6 |
| MS.gene064422.t1 | MTR_4g084550 | 44.262 | 61 | 34 | 0 | 58 | 118 | 64 | 124 | 3.40e-14 | 67.8 |
| MS.gene064422.t1 | MTR_7g025010 | 44.444 | 63 | 35 | 0 | 56 | 118 | 45 | 107 | 2.36e-13 | 67.8 |
| MS.gene064422.t1 | MTR_1g019130 | 40.789 | 76 | 45 | 0 | 58 | 133 | 90 | 165 | 3.17e-13 | 65.9 |
| MS.gene064422.t1 | MTR_4g088070 | 36.585 | 82 | 52 | 0 | 56 | 137 | 27 | 108 | 4.72e-13 | 67.0 |
| MS.gene064422.t1 | MTR_1g019130 | 40.789 | 76 | 45 | 0 | 58 | 133 | 90 | 165 | 7.33e-13 | 65.1 |
| MS.gene064422.t1 | MTR_8g107210 | 44.262 | 61 | 34 | 0 | 58 | 118 | 96 | 156 | 2.73e-12 | 64.7 |
| MS.gene064422.t1 | MTR_4g088080 | 45.000 | 60 | 33 | 0 | 56 | 115 | 38 | 97 | 5.19e-12 | 63.5 |
| MS.gene064422.t1 | MTR_4g063735 | 42.623 | 61 | 35 | 0 | 58 | 118 | 25 | 85 | 1.72e-11 | 61.6 |
| MS.gene064422.t1 | MTR_7g060630 | 45.000 | 60 | 33 | 0 | 58 | 117 | 8 | 67 | 5.01e-11 | 59.7 |
| MS.gene064422.t1 | MTR_5g081990 | 38.462 | 65 | 40 | 0 | 58 | 122 | 33 | 97 | 7.96e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064422.t1 | AT4G35550 | 51.852 | 216 | 75 | 4 | 2 | 189 | 44 | 258 | 4.15e-64 | 199 |
| MS.gene064422.t1 | AT1G20700 | 48.603 | 179 | 79 | 4 | 1 | 177 | 36 | 203 | 1.44e-54 | 172 |
| MS.gene064422.t1 | AT1G20700 | 47.701 | 174 | 78 | 4 | 1 | 172 | 36 | 198 | 2.20e-51 | 164 |
| MS.gene064422.t1 | AT1G20700 | 49.275 | 138 | 59 | 2 | 40 | 177 | 15 | 141 | 2.22e-43 | 142 |
| MS.gene064422.t1 | AT1G20710 | 45.304 | 181 | 89 | 5 | 1 | 179 | 20 | 192 | 1.04e-36 | 126 |
| MS.gene064422.t1 | AT5G45980 | 46.774 | 62 | 33 | 0 | 56 | 117 | 53 | 114 | 1.10e-14 | 71.2 |
| MS.gene064422.t1 | AT2G33880 | 45.161 | 62 | 34 | 0 | 56 | 117 | 53 | 114 | 2.51e-14 | 70.5 |
| MS.gene064422.t1 | AT2G33880 | 45.161 | 62 | 34 | 0 | 56 | 117 | 53 | 114 | 2.85e-14 | 70.5 |
| MS.gene064422.t1 | AT1G46480 | 47.541 | 61 | 32 | 0 | 58 | 118 | 90 | 150 | 1.50e-13 | 66.2 |
| MS.gene064422.t1 | AT3G18010 | 40.845 | 71 | 42 | 0 | 58 | 128 | 76 | 146 | 3.72e-13 | 67.0 |
| MS.gene064422.t1 | AT1G46480 | 47.541 | 61 | 32 | 0 | 58 | 118 | 90 | 150 | 4.77e-13 | 65.9 |
| MS.gene064422.t1 | AT3G11260 | 36.458 | 96 | 56 | 2 | 58 | 150 | 24 | 117 | 1.14e-12 | 63.9 |
| MS.gene064422.t1 | AT2G28610 | 46.667 | 60 | 32 | 0 | 58 | 117 | 8 | 67 | 5.90e-12 | 62.8 |
| MS.gene064422.t1 | AT5G05770 | 33.333 | 84 | 55 | 1 | 58 | 141 | 29 | 111 | 7.50e-12 | 60.1 |
| MS.gene064422.t1 | AT5G59340 | 43.077 | 65 | 37 | 0 | 54 | 118 | 10 | 74 | 1.43e-11 | 62.0 |
| MS.gene064422.t1 | AT2G01500 | 35.577 | 104 | 57 | 2 | 44 | 137 | 37 | 140 | 4.14e-11 | 60.8 |
Find 35 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAGACTAATGTTTATAAT+TGG | 0.232522 | 3.2:+91429757 | MS.gene064422:CDS |
| TTGAACGAGCTCTTCTGTTC+TGG | 0.269547 | 3.2:-91429782 | None:intergenic |
| TATGTCTTTGATCTTCTGTT+TGG | 0.364760 | 3.2:-91429703 | None:intergenic |
| TCAACTTCTGTGTCTGCCTC+TGG | 0.402663 | 3.2:-91429846 | None:intergenic |
| GTCTTTGATCTTCTGTTTGG+TGG | 0.403902 | 3.2:-91429700 | None:intergenic |
| CGTTGGAGTCCAACGCTGCC+TGG | 0.416225 | 3.2:-91429625 | None:intergenic |
| CTGGACACAAGATAACTTCC+AGG | 0.432136 | 3.2:+91429607 | MS.gene064422:CDS |
| TGCAGGATTTGAGCACTTGT+TGG | 0.434550 | 3.2:+91430354 | MS.gene064422:intron |
| CTCAACAAGCTGATCAGAAA+TGG | 0.436221 | 3.2:-91428289 | None:intergenic |
| TGAGAGTTTATCACCTCATC+GGG | 0.446050 | 3.2:+91429920 | MS.gene064422:CDS |
| CCACTGATGATGGCTTGCTC+TGG | 0.448763 | 3.2:+91429588 | MS.gene064422:CDS |
| GCAGGATTTGAGCACTTGTT+GGG | 0.456755 | 3.2:+91430355 | MS.gene064422:intron |
| TCTTTGATCTTCTGTTTGGT+GGG | 0.460764 | 3.2:-91429699 | None:intergenic |
| TTGAGAGTTTATCACCTCAT+CGG | 0.471970 | 3.2:+91429919 | MS.gene064422:CDS |
| ACCGTGTTGCCCTAGTTCAA+TGG | 0.479896 | 3.2:-91429727 | None:intergenic |
| TACGCTCAAGTATTTGAAGC+TGG | 0.512249 | 3.2:-91429653 | None:intergenic |
| ATTTGAAGCTGGATAGGCGT+TGG | 0.517894 | 3.2:-91429642 | None:intergenic |
| TTAAGATTAATACCTATGTC+AGG | 0.524253 | 3.2:-91429966 | None:intergenic |
| GTACTGTGATCCACTGATGA+TGG | 0.540609 | 3.2:+91429578 | MS.gene064422:CDS |
| TCAAGTATTTGAAGCTGGAT+AGG | 0.541162 | 3.2:-91429648 | None:intergenic |
| AAGCAATCATCTGTTACTGC+AGG | 0.542364 | 3.2:+91429810 | MS.gene064422:CDS |
| GAATGTTCAGGACTGAGACT+TGG | 0.551998 | 3.2:+91429549 | MS.gene064422:intron |
| ACCTGCGAGGTCGTGTTGAG+TGG | 0.570461 | 3.2:-91428328 | None:intergenic |
| AAAGACATAACCATTGAACT+AGG | 0.570662 | 3.2:+91429717 | MS.gene064422:CDS |
| ACCACTCAACACGACCTCGC+AGG | 0.579613 | 3.2:+91428327 | MS.gene064422:CDS |
| CCAATTATAAACATTAGTCT+CGG | 0.584869 | 3.2:-91429757 | None:intergenic |
| TTTATCACCTCATCGGGTCA+AGG | 0.591799 | 3.2:+91429926 | MS.gene064422:CDS |
| AAGACATAACCATTGAACTA+GGG | 0.603476 | 3.2:+91429718 | MS.gene064422:CDS |
| CCAGAGCAAGCCATCATCAG+TGG | 0.606100 | 3.2:-91429588 | None:intergenic |
| AGATAACTTCCAGGCAGCGT+TGG | 0.612319 | 3.2:+91429616 | MS.gene064422:CDS |
| TACATATCCTTGACCCGATG+AGG | 0.618531 | 3.2:-91429933 | None:intergenic |
| AGGAAATCATGCAGAGCCAG+AGG | 0.631315 | 3.2:+91429830 | MS.gene064422:CDS |
| ACCATTGAACTAGGGCAACA+CGG | 0.634091 | 3.2:+91429726 | MS.gene064422:CDS |
| TACATTCAGAGTCCTGACAT+AGG | 0.642781 | 3.2:+91429954 | MS.gene064422:CDS |
| ATAGTAGTAGTTTACCTGCG+AGG | 0.718032 | 3.2:-91428341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATGAAAATAGTTTAA+CGG | - | chr3.2:91428940-91428959 | None:intergenic | 10.0% |
| !!! | TTTAATTCTCTATTTTTTTA+AGG | - | chr3.2:91429381-91429400 | None:intergenic | 10.0% |
| !! | CTATAAAAAAAAAACACTAA+AGG | - | chr3.2:91429302-91429321 | None:intergenic | 15.0% |
| !! | CTGTAATATAACATTTATAT+AGG | - | chr3.2:91428593-91428612 | None:intergenic | 15.0% |
| !! | TAAATTTATATGACATTAAG+TGG | + | chr3.2:91430323-91430342 | MS.gene064422:intron | 15.0% |
| !!! | AAAAACTAGTTTAATACAAA+AGG | - | chr3.2:91430023-91430042 | None:intergenic | 15.0% |
| !!! | AAAACTAGTTTAATACAAAA+GGG | - | chr3.2:91430022-91430041 | None:intergenic | 15.0% |
| !! | AAAAACACTAAAGGTTTAAT+TGG | - | chr3.2:91429293-91429312 | None:intergenic | 20.0% |
| !! | ATATAGGCAAATTTGTATAA+GGG | - | chr3.2:91428577-91428596 | None:intergenic | 20.0% |
| !! | ATTCAATTGTAAACAACAAA+TGG | - | chr3.2:91430217-91430236 | None:intergenic | 20.0% |
| !! | TATATAGGCAAATTTGTATA+AGG | - | chr3.2:91428578-91428597 | None:intergenic | 20.0% |
| !!! | AAAACATTCATTTTTGTAAG+AGG | + | chr3.2:91428845-91428864 | MS.gene064422:intron | 20.0% |
| !!! | AATAATGTACGATGATTTTT+CGG | - | chr3.2:91429244-91429263 | None:intergenic | 20.0% |
| !!! | GAACAGAAAAATTGATTTTT+TGG | - | chr3.2:91429167-91429186 | None:intergenic | 20.0% |
| !!! | TTTTTATAGGTGAATATTAG+TGG | + | chr3.2:91429414-91429433 | MS.gene064422:intron | 20.0% |
| ! | AATTACTTAGCTATAAAACC+TGG | + | chr3.2:91430268-91430287 | MS.gene064422:intron | 25.0% |
| ! | ACTAATGGAAACAACTTATT+TGG | - | chr3.2:91429030-91429049 | None:intergenic | 25.0% |
| ! | AGAACTCACAAAATTAAATG+TGG | - | chr3.2:91428802-91428821 | None:intergenic | 25.0% |
| ! | CCTATAAAAAAAAACACTCA+AGG | - | chr3.2:91429404-91429423 | None:intergenic | 25.0% |
| ! | GTTGTTTACAATTGAATGAT+TGG | + | chr3.2:91430220-91430239 | MS.gene064422:intron | 25.0% |
| ! | TGTTATATTGTTGATGTCAT+TGG | + | chr3.2:91428647-91428666 | MS.gene064422:intron | 25.0% |
| ! | TTAAGATTAATACCTATGTC+AGG | - | chr3.2:91429969-91429988 | None:intergenic | 25.0% |
| ! | TTCAAATAAGTCTATCCAAA+CGG | + | chr3.2:91429091-91429110 | MS.gene064422:intron | 25.0% |
| !! | AGAAAGAGAATACATGATTT+TGG | + | chr3.2:91428526-91428545 | MS.gene064422:intron | 25.0% |
| !! | CCAATTATAAACATTAGTCT+CGG | - | chr3.2:91429760-91429779 | None:intergenic | 25.0% |
| !!! | ACACTTTTTGGAATTACTAA+TGG | - | chr3.2:91429045-91429064 | None:intergenic | 25.0% |
| !!! | CCTTGAGTGTTTTTTTTTAT+AGG | + | chr3.2:91429401-91429420 | MS.gene064422:intron | 25.0% |
| AAAGACATAACCATTGAACT+AGG | + | chr3.2:91429717-91429736 | MS.gene064422:CDS | 30.0% | |
| AAATTAAATGTGGAGAAGTG+AGG | - | chr3.2:91428792-91428811 | None:intergenic | 30.0% | |
| AAGACATAACCATTGAACTA+GGG | + | chr3.2:91429718-91429737 | MS.gene064422:CDS | 30.0% | |
| CCGAGACTAATGTTTATAAT+TGG | + | chr3.2:91429757-91429776 | MS.gene064422:CDS | 30.0% | |
| GACATTGCATAATTTATGCA+GGG | + | chr3.2:91428745-91428764 | MS.gene064422:intron | 30.0% | |
| GTCAATGTTATTGAATGTTC+AGG | + | chr3.2:91429537-91429556 | MS.gene064422:intron | 30.0% | |
| TATGTCTTTGATCTTCTGTT+TGG | - | chr3.2:91429706-91429725 | None:intergenic | 30.0% | |
| TCAAATAAGTCTATCCAAAC+GGG | + | chr3.2:91429092-91429111 | MS.gene064422:intron | 30.0% | |
| TCTATGAATACTCACTAACT+AGG | + | chr3.2:91429991-91430010 | MS.gene064422:intron | 30.0% | |
| TTAATGCCTAAAACGAAGTA+TGG | - | chr3.2:91430306-91430325 | None:intergenic | 30.0% | |
| ! | TAAACACTTGTGACACTTTT+TGG | - | chr3.2:91429057-91429076 | None:intergenic | 30.0% |
| !! | AATTTCATTTTTGTTGTCCC+TGG | + | chr3.2:91428702-91428721 | MS.gene064422:intron | 30.0% |
| !! | ATTAAGTGGTTTGTTTATGC+AGG | + | chr3.2:91430337-91430356 | MS.gene064422:intron | 30.0% |
| !! | TCACATGTTTTGTTCTCTTT+TGG | - | chr3.2:91429876-91429895 | None:intergenic | 30.0% |
| !!! | ATTGATTTTTTGGAATCGAG+AGG | - | chr3.2:91429157-91429176 | None:intergenic | 30.0% |
| AATTCTCTGTGTTCAGTTAG+GGG | + | chr3.2:91430105-91430124 | MS.gene064422:intron | 35.0% | |
| ACAATTCTCTGTGTTCAGTT+AGG | + | chr3.2:91430103-91430122 | MS.gene064422:intron | 35.0% | |
| AGAGAGCTTATGGAAATAAG+CGG | + | chr3.2:91428986-91429005 | MS.gene064422:intron | 35.0% | |
| AGTGTCACAAGTGTTTATGT+CGG | + | chr3.2:91429060-91429079 | MS.gene064422:intron | 35.0% | |
| ATTGTCAATCGTATCGAACA+TGG | - | chr3.2:91430088-91430107 | None:intergenic | 35.0% | |
| CAATTCTCTGTGTTCAGTTA+GGG | + | chr3.2:91430104-91430123 | MS.gene064422:intron | 35.0% | |
| CACATGAAGAAATTCGTGTA+AGG | + | chr3.2:91430059-91430078 | MS.gene064422:intron | 35.0% | |
| CGACATTGCATAATTTATGC+AGG | + | chr3.2:91428744-91428763 | MS.gene064422:intron | 35.0% | |
| CTAGTCCTAAATAAGTAGCT+CGG | - | chr3.2:91429496-91429515 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTCT+AGG | - | chr3.2:91428986-91429005 | None:intergenic | 35.0% | |
| GTATGGCTGTTTATTTAACC+AGG | - | chr3.2:91430289-91430308 | None:intergenic | 35.0% | |
| TCTTTGATCTTCTGTTTGGT+GGG | - | chr3.2:91429702-91429721 | None:intergenic | 35.0% | |
| TTGAGAGTTTATCACCTCAT+CGG | + | chr3.2:91429919-91429938 | MS.gene064422:CDS | 35.0% | |
| TTGGGAAAAATTGAAGTTGC+AGG | + | chr3.2:91430373-91430392 | MS.gene064422:CDS | 35.0% | |
| ! | AAACAGCCATACTTCGTTTT+AGG | + | chr3.2:91430297-91430316 | MS.gene064422:intron | 35.0% |
| ! | AGTGAGTGCAGGATATATTT+TGG | - | chr3.2:91429119-91429138 | None:intergenic | 35.0% |
| ! | TCAAGTATTTGAAGCTGGAT+AGG | - | chr3.2:91429651-91429670 | None:intergenic | 35.0% |
| !!! | TTTTTTGTCTAGTAGCCTAG+TGG | - | chr3.2:91428827-91428846 | None:intergenic | 35.0% |
| AAATTGGTTACAGTGAGTGC+AGG | - | chr3.2:91429130-91429149 | None:intergenic | 40.0% | |
| AAGCAATCATCTGTTACTGC+AGG | + | chr3.2:91429810-91429829 | MS.gene064422:CDS | 40.0% | |
| ACCAACCGAGCTACTTATTT+AGG | + | chr3.2:91429488-91429507 | MS.gene064422:intron | 40.0% | |
| ATAGTAGTAGTTTACCTGCG+AGG | - | chr3.2:91428344-91428363 | None:intergenic | 40.0% | |
| CTCAACAAGCTGATCAGAAA+TGG | - | chr3.2:91428292-91428311 | None:intergenic | 40.0% | |
| GACAAGCGCTAAATCAATCA+AGG | - | chr3.2:91429520-91429539 | None:intergenic | 40.0% | |
| GGAATCGAGAGGACAAAAAT+TGG | - | chr3.2:91429146-91429165 | None:intergenic | 40.0% | |
| GTCTTTGATCTTCTGTTTGG+TGG | - | chr3.2:91429703-91429722 | None:intergenic | 40.0% | |
| TACATTCAGAGTCCTGACAT+AGG | + | chr3.2:91429954-91429973 | MS.gene064422:CDS | 40.0% | |
| TAGCTATCCTAGAGAGCTTA+TGG | + | chr3.2:91428976-91428995 | MS.gene064422:intron | 40.0% | |
| TCCTAAATAAGTAGCTCGGT+TGG | - | chr3.2:91429492-91429511 | None:intergenic | 40.0% | |
| TGAGAGTTTATCACCTCATC+GGG | + | chr3.2:91429920-91429939 | MS.gene064422:CDS | 40.0% | |
| TGCATAATTTATGCAGGGCT+GGG | + | chr3.2:91428750-91428769 | MS.gene064422:intron | 40.0% | |
| TTGCATAATTTATGCAGGGC+TGG | + | chr3.2:91428749-91428768 | MS.gene064422:intron | 40.0% | |
| ! | CGTATTTTCGATGAAGGCAA+TGG | + | chr3.2:91429672-91429691 | MS.gene064422:CDS | 40.0% |
| ! | CTTGAGCGTATTTTCGATGA+AGG | + | chr3.2:91429666-91429685 | MS.gene064422:CDS | 40.0% |
| ! | TACGCTCAAGTATTTGAAGC+TGG | - | chr3.2:91429656-91429675 | None:intergenic | 40.0% |
| !! | GGATATATTTTGGACCCGTT+TGG | - | chr3.2:91429109-91429128 | None:intergenic | 40.0% |
| !! | TTTTGTGAGTTCTAGCCACT+AGG | + | chr3.2:91428809-91428828 | MS.gene064422:intron | 40.0% |
| ACCATTGAACTAGGGCAACA+CGG | + | chr3.2:91429726-91429745 | MS.gene064422:CDS | 45.0% | |
| CTGGACACAAGATAACTTCC+AGG | + | chr3.2:91429607-91429626 | MS.gene064422:CDS | 45.0% | |
| GAATGTTCAGGACTGAGACT+TGG | + | chr3.2:91429549-91429568 | MS.gene064422:intron | 45.0% | |
| GCAGGATTTGAGCACTTGTT+GGG | + | chr3.2:91430355-91430374 | MS.gene064422:intron | 45.0% | |
| GTACTGTGATCCACTGATGA+TGG | + | chr3.2:91429578-91429597 | MS.gene064422:CDS | 45.0% | |
| TACATATCCTTGACCCGATG+AGG | - | chr3.2:91429936-91429955 | None:intergenic | 45.0% | |
| TGCAGGATTTGAGCACTTGT+TGG | + | chr3.2:91430354-91430373 | MS.gene064422:intron | 45.0% | |
| TTGAACGAGCTCTTCTGTTC+TGG | - | chr3.2:91429785-91429804 | None:intergenic | 45.0% | |
| TTTATCACCTCATCGGGTCA+AGG | + | chr3.2:91429926-91429945 | MS.gene064422:CDS | 45.0% | |
| ! | ATTTGAAGCTGGATAGGCGT+TGG | - | chr3.2:91429645-91429664 | None:intergenic | 45.0% |
| ACCGTGTTGCCCTAGTTCAA+TGG | - | chr3.2:91429730-91429749 | None:intergenic | 50.0% | |
| AGATAACTTCCAGGCAGCGT+TGG | + | chr3.2:91429616-91429635 | MS.gene064422:CDS | 50.0% | |
| AGGAAATCATGCAGAGCCAG+AGG | + | chr3.2:91429830-91429849 | MS.gene064422:CDS | 50.0% | |
| CTAGTACCTTCAGTGTCCCT+TGG | + | chr3.2:91429462-91429481 | MS.gene064422:intron | 50.0% | |
| TCAACTTCTGTGTCTGCCTC+TGG | - | chr3.2:91429849-91429868 | None:intergenic | 50.0% | |
| ! | ATGTGGAGAAGTGAGGTGTC+CGG | - | chr3.2:91428785-91428804 | None:intergenic | 50.0% |
| !! | CAAGGGACACTGAAGGTACT+AGG | - | chr3.2:91429464-91429483 | None:intergenic | 50.0% |
| CCAGAGCAAGCCATCATCAG+TGG | - | chr3.2:91429591-91429610 | None:intergenic | 55.0% | |
| GCCAACTGTGCTAAGCTCCA+GGG | - | chr3.2:91428722-91428741 | None:intergenic | 55.0% | |
| TCCCTGGAGCTTAGCACAGT+TGG | + | chr3.2:91428718-91428737 | MS.gene064422:intron | 55.0% | |
| TGCCAACTGTGCTAAGCTCC+AGG | - | chr3.2:91428723-91428742 | None:intergenic | 55.0% | |
| ! | TGTGGAGAAGTGAGGTGTCC+GGG | - | chr3.2:91428784-91428803 | None:intergenic | 55.0% |
| !! | CCACTGATGATGGCTTGCTC+TGG | + | chr3.2:91429588-91429607 | MS.gene064422:CDS | 55.0% |
| !! | TAGCTCGGTTGGTGAGCCAA+GGG | - | chr3.2:91429481-91429500 | None:intergenic | 55.0% |
| ACCACTCAACACGACCTCGC+AGG | + | chr3.2:91428327-91428346 | MS.gene064422:CDS | 60.0% | |
| ACCTGCGAGGTCGTGTTGAG+TGG | - | chr3.2:91428331-91428350 | None:intergenic | 60.0% | |
| GGTGAGCCAAGGGACACTGA+AGG | - | chr3.2:91429471-91429490 | None:intergenic | 60.0% | |
| ! | GTGGAGAAGTGAGGTGTCCG+GGG | - | chr3.2:91428783-91428802 | None:intergenic | 60.0% |
| !! | GTAGCTCGGTTGGTGAGCCA+AGG | - | chr3.2:91429482-91429501 | None:intergenic | 60.0% |
| CAGGGCTGGGTTTCGAACCC+CGG | + | chr3.2:91428763-91428782 | MS.gene064422:intron | 65.0% | |
| CGTTGGAGTCCAACGCTGCC+TGG | - | chr3.2:91429628-91429647 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 91428252 | 91430420 | 91428252 | ID=MS.gene064422 |
| chr3.2 | mRNA | 91428252 | 91430420 | 91428252 | ID=MS.gene064422.t1;Parent=MS.gene064422 |
| chr3.2 | exon | 91428252 | 91428348 | 91428252 | ID=MS.gene064422.t1.exon1;Parent=MS.gene064422.t1 |
| chr3.2 | CDS | 91428252 | 91428348 | 91428252 | ID=cds.MS.gene064422.t1;Parent=MS.gene064422.t1 |
| chr3.2 | exon | 91429559 | 91429975 | 91429559 | ID=MS.gene064422.t1.exon2;Parent=MS.gene064422.t1 |
| chr3.2 | CDS | 91429559 | 91429975 | 91429559 | ID=cds.MS.gene064422.t1;Parent=MS.gene064422.t1 |
| chr3.2 | exon | 91430359 | 91430420 | 91430359 | ID=MS.gene064422.t1.exon3;Parent=MS.gene064422.t1 |
| chr3.2 | CDS | 91430359 | 91430420 | 91430359 | ID=cds.MS.gene064422.t1;Parent=MS.gene064422.t1 |
| Gene Sequence |
| Protein sequence |
