Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064838.t1 | XP_013462277.1 | 99.8 | 473 | 1 | 0 | 1 | 473 | 1 | 473 | 2.50E-292 | 1013.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064838.t1 | O48561 | 93.4 | 473 | 31 | 0 | 1 | 473 | 1 | 473 | 2.0e-277 | 955.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064838.t1 | A0A072V3A8 | 99.8 | 473 | 1 | 0 | 1 | 473 | 1 | 473 | 1.8e-292 | 1013.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050876 | MS.gene064838 | 0.819142 | 1.36E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene064838 | -0.823058 | 1.70E-53 | -1.69E-46 |
| MS.gene053443 | MS.gene064838 | -0.812986 | 3.22E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene064838 | -0.825378 | 4.84E-54 | -1.69E-46 |
| MS.gene055765 | MS.gene064838 | -0.829705 | 4.43E-55 | -1.69E-46 |
| MS.gene055849 | MS.gene064838 | 0.809437 | 1.89E-50 | -1.69E-46 |
| MS.gene057684 | MS.gene064838 | 0.906503 | 1.38E-80 | -1.69E-46 |
| MS.gene05894 | MS.gene064838 | -0.824631 | 7.27E-54 | -1.69E-46 |
| MS.gene059778 | MS.gene064838 | -0.832391 | 9.71E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene064838 | 0.823946 | 1.05E-53 | -1.69E-46 |
| MS.gene059901 | MS.gene064838 | 0.808574 | 2.90E-50 | -1.69E-46 |
| MS.gene060512 | MS.gene064838 | -0.817095 | 3.94E-52 | -1.69E-46 |
| MS.gene060906 | MS.gene064838 | -0.820218 | 7.70E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene064838 | -0.809109 | 2.23E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064838.t1 | MTR_3g115370 | 99.789 | 473 | 1 | 0 | 1 | 473 | 1 | 473 | 0.0 | 989 |
| MS.gene064838.t1 | MTR_3g115370 | 98.135 | 429 | 8 | 0 | 1 | 429 | 1 | 429 | 0.0 | 876 |
| MS.gene064838.t1 | MTR_1386s0010 | 46.911 | 437 | 228 | 3 | 9 | 444 | 21 | 454 | 1.68e-137 | 405 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064838.t1 | AT4G35090 | 87.738 | 473 | 58 | 0 | 1 | 473 | 1 | 473 | 0.0 | 890 |
| MS.gene064838.t1 | AT4G35090 | 87.738 | 473 | 58 | 0 | 1 | 473 | 1 | 473 | 0.0 | 887 |
| MS.gene064838.t1 | AT4G35090 | 87.420 | 469 | 59 | 0 | 5 | 473 | 5 | 473 | 0.0 | 879 |
| MS.gene064838.t1 | AT1G20630 | 86.469 | 473 | 64 | 0 | 1 | 473 | 1 | 473 | 0.0 | 869 |
| MS.gene064838.t1 | AT1G20620 | 78.224 | 473 | 103 | 0 | 1 | 473 | 1 | 473 | 0.0 | 810 |
| MS.gene064838.t1 | AT1G20620 | 78.224 | 473 | 103 | 0 | 1 | 473 | 1 | 473 | 0.0 | 810 |
| MS.gene064838.t1 | AT1G20620 | 77.991 | 468 | 103 | 0 | 6 | 473 | 65 | 532 | 0.0 | 801 |
| MS.gene064838.t1 | AT1G20620 | 78.282 | 419 | 91 | 0 | 1 | 419 | 1 | 419 | 0.0 | 714 |
| MS.gene064838.t1 | AT1G20620 | 75.978 | 358 | 86 | 0 | 116 | 473 | 1 | 358 | 0.0 | 605 |
| MS.gene064838.t1 | AT1G20620 | 77.818 | 275 | 61 | 0 | 116 | 390 | 1 | 275 | 8.20e-167 | 473 |
Find 165 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGGTCTCTCAAGGTTTC+AGG | 0.120854 | 3.4:-98688849 | None:intergenic |
| GAGAACATGTGAAGGCTTTC+TGG | 0.167930 | 3.4:-98689605 | None:intergenic |
| GCGCTTACAATTCTCCTTTC+TGG | 0.174679 | 3.4:+98687552 | MS.gene064838:CDS |
| CCTTTCTGGACTACAAATTC+TGG | 0.264260 | 3.4:+98687566 | MS.gene064838:CDS |
| GGATCCGTTCCCTATCAAAT+TGG | 0.267128 | 3.4:-98688668 | None:intergenic |
| GTTGGATCCTCCCACCTTAA+TGG | 0.271983 | 3.4:-98689786 | None:intergenic |
| CTTTCCCAGCCTTGTTGATC+AGG | 0.273529 | 3.4:-98689700 | None:intergenic |
| TATAGGCACATGGATGGTTT+TGG | 0.286155 | 3.4:+98689662 | MS.gene064838:CDS |
| ATTCTCCTGGATGTGGGACT+TGG | 0.295541 | 3.4:-98689552 | None:intergenic |
| CTGGCATGGACAACACGTTC+TGG | 0.317458 | 3.4:-98688690 | None:intergenic |
| TGGATGTGGGACTTGGGGTT+GGG | 0.323157 | 3.4:-98689545 | None:intergenic |
| TTAAGAGCATGGACCATATC+TGG | 0.327136 | 3.4:-98689521 | None:intergenic |
| TTCTCCTGGATGTGGGACTT+GGG | 0.330541 | 3.4:-98689551 | None:intergenic |
| CTGGATGTGGGACTTGGGGT+TGG | 0.333029 | 3.4:-98689546 | None:intergenic |
| GCAGGAAGTTGCAGATAGTT+TGG | 0.333290 | 3.4:-98690139 | None:intergenic |
| TGCTTGAAGTTGTTCTGCTT+TGG | 0.342575 | 3.4:-98690943 | None:intergenic |
| CTCCTTCCTGTTTGATGATG+TGG | 0.344839 | 3.4:+98689625 | MS.gene064838:CDS |
| CAGGGTAACTTTGACCTTGT+TGG | 0.356144 | 3.4:+98689455 | MS.gene064838:intron |
| TTCATTAATTTCTACCTCTC+TGG | 0.360898 | 3.4:-98688895 | None:intergenic |
| CAAATTCTGGTGCACCTGTT+TGG | 0.367034 | 3.4:+98687579 | MS.gene064838:CDS |
| CCCATGAAATCCGCAGCATC+TGG | 0.368012 | 3.4:+98691142 | MS.gene064838:CDS |
| ACCCTTTGCACTTGCTCCCC+TGG | 0.372101 | 3.4:-98688709 | None:intergenic |
| CTGGAGAGCGATACCGATCT+TGG | 0.372596 | 3.4:+98690968 | MS.gene064838:CDS |
| AAAAGCTTGCCCAATTTGAT+AGG | 0.374612 | 3.4:+98688658 | MS.gene064838:CDS |
| AGTCCCACATCCAGGAGAAT+TGG | 0.375895 | 3.4:+98689555 | MS.gene064838:CDS |
| CTGTCTTCTTCGTTCATGAC+GGG | 0.379692 | 3.4:+98689489 | MS.gene064838:CDS |
| TGATAATCTTCCAAGAGAAT+TGG | 0.382249 | 3.4:-98688627 | None:intergenic |
| TTTGGCAGGTCCAATTCTCT+TGG | 0.391620 | 3.4:+98688617 | MS.gene064838:intron |
| TCCAGATGCTGCGGATTTCA+TGG | 0.392167 | 3.4:-98691143 | None:intergenic |
| GTTGGAGGAAGAGGCCATTA+AGG | 0.394703 | 3.4:+98689772 | MS.gene064838:CDS |
| TCAAATTTGTCTTCGTGAGC+AGG | 0.405045 | 3.4:-98689893 | None:intergenic |
| TTGCACTTGCTCCCCTGGCA+TGG | 0.415695 | 3.4:-98688704 | None:intergenic |
| TCCTTCCTGTTTGATGATGT+GGG | 0.418017 | 3.4:+98689626 | MS.gene064838:CDS |
| TGGGTGTCCCACAAGATTAT+AGG | 0.422410 | 3.4:+98689645 | MS.gene064838:CDS |
| CCTTCAGCCCGTAGGTCGCC+TGG | 0.422999 | 3.4:+98689964 | MS.gene064838:CDS |
| TGTCCTGCCATTATTGTGCC+TGG | 0.427513 | 3.4:+98690040 | MS.gene064838:CDS |
| GTATTGTTGTATACCTTGTA+TGG | 0.430027 | 3.4:-98687348 | None:intergenic |
| CCTGTCTTCTTCGTTCATGA+CGG | 0.433221 | 3.4:+98689488 | MS.gene064838:CDS |
| GAGGAGTTGTTGTTCCAAAC+AGG | 0.433945 | 3.4:-98687593 | None:intergenic |
| ATTGTTGTGGTGAGCACACT+TGG | 0.434174 | 3.4:-98690170 | None:intergenic |
| GCAGATTTCCTACGAGCTCC+TGG | 0.438797 | 3.4:+98688771 | MS.gene064838:CDS |
| AGGTCAATTACTTCCCTTCA+AGG | 0.445115 | 3.4:+98690385 | MS.gene064838:intron |
| CTTGGAAGATTATCATCTTG+TGG | 0.451741 | 3.4:+98688635 | MS.gene064838:CDS |
| ACCTCTAGATCCAACGGTTA+GGG | 0.454007 | 3.4:-98687615 | None:intergenic |
| ATATACACCAGGCACAATAA+TGG | 0.457625 | 3.4:-98690047 | None:intergenic |
| TTCTCCAATTCTCCTGGATG+TGG | 0.467363 | 3.4:-98689559 | None:intergenic |
| CAAGGATTCTCCAATTCTCC+TGG | 0.469085 | 3.4:-98689565 | None:intergenic |
| CCATGTGCCTATAATCTTGT+GGG | 0.470182 | 3.4:-98689652 | None:intergenic |
| GAGGGTCTCTCAAGGTTTCA+GGG | 0.471242 | 3.4:-98688848 | None:intergenic |
| TACCTCTAGATCCAACGGTT+AGG | 0.473805 | 3.4:-98687616 | None:intergenic |
| AAGATAGATTTCTCCGCAGA+TGG | 0.473911 | 3.4:+98691091 | MS.gene064838:CDS |
| CAAGATCGGTATCGCTCTCC+AGG | 0.473917 | 3.4:-98690967 | None:intergenic |
| TTTCTCTGCGTGCCGTGAAA+AGG | 0.475377 | 3.4:+98690455 | MS.gene064838:CDS |
| CTGGATCTCATACTGGTCTC+AGG | 0.475961 | 3.4:+98691161 | MS.gene064838:CDS |
| GTTTCATGAATTTCATTCAC+AGG | 0.477320 | 3.4:+98690203 | MS.gene064838:CDS |
| TGGCATGGACAACACGTTCT+GGG | 0.477969 | 3.4:-98688689 | None:intergenic |
| CAGAACGTGTTGTCCATGCC+AGG | 0.477991 | 3.4:+98688691 | MS.gene064838:CDS |
| TCCTGTTCGTCATGCAGAAA+AGG | 0.478892 | 3.4:+98690413 | MS.gene064838:CDS |
| CGAACAGGATCATGCCTTGA+AGG | 0.481337 | 3.4:-98690399 | None:intergenic |
| CTATGTTCTTGTTCAAGACC+AGG | 0.484090 | 3.4:-98689982 | None:intergenic |
| CAGAACAACTTCAAGCAGCC+TGG | 0.486042 | 3.4:+98690949 | MS.gene064838:CDS |
| GATCCGTTCCCTATCAAATT+GGG | 0.489050 | 3.4:-98688667 | None:intergenic |
| TCTCCTGGATGTGGGACTTG+GGG | 0.492998 | 3.4:-98689550 | None:intergenic |
| TTTCCCAGCCTTGTTGATCA+GGG | 0.494239 | 3.4:-98689699 | None:intergenic |
| GAAAGGAGAATTGTAAGCGC+TGG | 0.495605 | 3.4:-98687549 | None:intergenic |
| GTAGGAAATCTGCACAAGTC+AGG | 0.497677 | 3.4:-98688761 | None:intergenic |
| GAGAAATTAGCAGTAGGAAT+GGG | 0.501006 | 3.4:-98690438 | None:intergenic |
| CAGGCGACCTACGGGCTGAA+GGG | 0.503163 | 3.4:-98689963 | None:intergenic |
| GTTCAAGACCAGGCGACCTA+CGG | 0.504173 | 3.4:-98689972 | None:intergenic |
| TGGGGTTGGGTTTAAGAGCA+TGG | 0.506473 | 3.4:-98689532 | None:intergenic |
| CAGCAGCAATTGAATCATAC+AGG | 0.508681 | 3.4:-98689829 | None:intergenic |
| GGACACCCACATCATCAAAC+AGG | 0.511274 | 3.4:-98689631 | None:intergenic |
| ACCGATCTTGGGCACCCGAC+AGG | 0.511670 | 3.4:+98690980 | MS.gene064838:CDS |
| CAGTGTACGTGAAATTTCAC+TGG | 0.512177 | 3.4:+98689723 | MS.gene064838:CDS |
| GCACACTTGGGAGCATTAGC+AGG | 0.512211 | 3.4:-98690157 | None:intergenic |
| ACCTGTCGGGTGCCCAAGAT+CGG | 0.512897 | 3.4:-98690981 | None:intergenic |
| GCAGCATCTGGATCTCATAC+TGG | 0.513786 | 3.4:+98691154 | MS.gene064838:CDS |
| ATGACAGGTGTCTGAACTCC+AGG | 0.514052 | 3.4:-98688789 | None:intergenic |
| GTATACCTTGTATGGATCCA+TGG | 0.516916 | 3.4:-98687340 | None:intergenic |
| TATTCCCTGATCAACAAGGC+TGG | 0.522948 | 3.4:+98689695 | MS.gene064838:CDS |
| TTCAAGACCAGGCGACCTAC+GGG | 0.524652 | 3.4:-98689971 | None:intergenic |
| CAAGTCTTAGTTACATCAAG+TGG | 0.525209 | 3.4:-98689923 | None:intergenic |
| TTGAGTAGCATGGCTGTGGT+TGG | 0.529136 | 3.4:-98689804 | None:intergenic |
| GATTCACAGAGGCACAGACT+TGG | 0.529651 | 3.4:+98690115 | MS.gene064838:CDS |
| AGAGAAATTAGCAGTAGGAA+TGG | 0.530921 | 3.4:-98690439 | None:intergenic |
| TGGAGAGCGATACCGATCTT+GGG | 0.535088 | 3.4:+98690969 | MS.gene064838:CDS |
| CGGATTTCATGGGTGACGCG+TGG | 0.535385 | 3.4:-98691132 | None:intergenic |
| CAACCCCAAGTCCCACATCC+AGG | 0.536425 | 3.4:+98689547 | MS.gene064838:CDS |
| CCAGGCGACCTACGGGCTGA+AGG | 0.540862 | 3.4:-98689964 | None:intergenic |
| GTAGAGAAACGCACAATGAC+AGG | 0.540987 | 3.4:-98688804 | None:intergenic |
| TCCATGTGCCTATAATCTTG+TGG | 0.541036 | 3.4:-98689653 | None:intergenic |
| CACTTGATGTAACTAAGACT+TGG | 0.542839 | 3.4:+98689924 | MS.gene064838:CDS |
| CTGTATGATTCAATTGCTGC+TGG | 0.545137 | 3.4:+98689830 | MS.gene064838:CDS |
| TGAAGGGGTATAATGTCCTC+AGG | 0.545718 | 3.4:-98689947 | None:intergenic |
| GCCAGGGGAGCAAGTGCAAA+GGG | 0.546598 | 3.4:+98688708 | MS.gene064838:CDS |
| AAAGCTTGCCCAATTTGATA+GGG | 0.548471 | 3.4:+98688659 | MS.gene064838:CDS |
| TCTCCAATTCTCCTGGATGT+GGG | 0.550324 | 3.4:-98689558 | None:intergenic |
| TGCCAGGGGAGCAAGTGCAA+AGG | 0.551070 | 3.4:+98688707 | MS.gene064838:CDS |
| CCAGATGCTGCGGATTTCAT+GGG | 0.552199 | 3.4:-98691142 | None:intergenic |
| TCCCTAACCGTTGGATCTAG+AGG | 0.553455 | 3.4:+98687614 | MS.gene064838:CDS |
| GAAGTGTCTGTTGGAGGAAG+AGG | 0.554768 | 3.4:+98689763 | MS.gene064838:CDS |
| CCGTCATGAACGAAGAAGAC+AGG | 0.555643 | 3.4:-98689488 | None:intergenic |
| TTTCATTCACAGGGATGAAG+AGG | 0.555667 | 3.4:+98690213 | MS.gene064838:CDS |
| TTGCCCAATTTGATAGGGAA+CGG | 0.556792 | 3.4:+98688664 | MS.gene064838:CDS |
| AACAACTCCTCCCTAACCGT+TGG | 0.562412 | 3.4:+98687605 | MS.gene064838:CDS |
| AGGCGACCTACGGGCTGAAG+GGG | 0.563132 | 3.4:-98689962 | None:intergenic |
| GGAGAATTGTAAGCGCTGGA+TGG | 0.570856 | 3.4:-98687545 | None:intergenic |
| AATTGTAAGCGCTGGATGGA+CGG | 0.572978 | 3.4:-98687541 | None:intergenic |
| ATTCACAGAGGCACAGACTT+GGG | 0.574309 | 3.4:+98690116 | MS.gene064838:CDS |
| ATTCCCTGATCAACAAGGCT+GGG | 0.574864 | 3.4:+98689696 | MS.gene064838:CDS |
| GAAAGTGAGAAAAGAAGTCA+AGG | 0.576589 | 3.4:-98689583 | None:intergenic |
| CCAGAATTTGTAGTCCAGAA+AGG | 0.579292 | 3.4:-98687566 | None:intergenic |
| GGATTTCATGGGTGACGCGT+GGG | 0.579795 | 3.4:-98691131 | None:intergenic |
| ATGTGGTGTGAAGTGTCTGT+TGG | 0.580105 | 3.4:+98689754 | MS.gene064838:CDS |
| GAACAGGATCATGCCTTGAA+GGG | 0.580459 | 3.4:-98690398 | None:intergenic |
| GGAGGAAGAGGCCATTAAGG+TGG | 0.581156 | 3.4:+98689775 | MS.gene064838:CDS |
| ACCAACCATGGATCCATACA+AGG | 0.581655 | 3.4:+98687335 | None:intergenic |
| TTCATGGGTGACGCGTGGGT+CGG | 0.582291 | 3.4:-98691127 | None:intergenic |
| TGAACAAACAGTTTCCACTC+AGG | 0.583241 | 3.4:-98689860 | None:intergenic |
| AGATAGATTTCTCCGCAGAT+GGG | 0.587386 | 3.4:+98691092 | MS.gene064838:CDS |
| CAGACACTTCACACCACATG+TGG | 0.589761 | 3.4:-98689750 | None:intergenic |
| CAAGATTATAGGCACATGGA+TGG | 0.589982 | 3.4:+98689656 | MS.gene064838:CDS |
| TAGATTTCTCCGCAGATGGG+TGG | 0.591794 | 3.4:+98691095 | MS.gene064838:CDS |
| GAGGAAGAGGCCATTAAGGT+GGG | 0.593020 | 3.4:+98689776 | MS.gene064838:CDS |
| CAGGAAAGTTGTTTCCAACA+AGG | 0.596437 | 3.4:-98689469 | None:intergenic |
| GGTCTTGAGTAGCATGGCTG+TGG | 0.596746 | 3.4:-98689808 | None:intergenic |
| CCCACAAGATTATAGGCACA+TGG | 0.598312 | 3.4:+98689652 | MS.gene064838:CDS |
| TGGTGTGAAGTGTCTGTTGG+AGG | 0.598470 | 3.4:+98689757 | MS.gene064838:CDS |
| AGAACGTGTTGTCCATGCCA+GGG | 0.598996 | 3.4:+98688692 | MS.gene064838:CDS |
| TTTCATGAATTTCATTCACA+GGG | 0.601023 | 3.4:+98690204 | MS.gene064838:CDS |
| GAACGTGTTGTCCATGCCAG+GGG | 0.604058 | 3.4:+98688693 | MS.gene064838:CDS |
| ACACCAGGCACAATAATGGC+AGG | 0.606260 | 3.4:-98690043 | None:intergenic |
| AAAACCTCGAGGGTCTCTCA+AGG | 0.607779 | 3.4:-98688856 | None:intergenic |
| ATGATAAGATGCTTCAAACC+AGG | 0.609656 | 3.4:+98690077 | MS.gene064838:CDS |
| CACATATTCCCTGATCAACA+AGG | 0.618103 | 3.4:+98689691 | MS.gene064838:CDS |
| ATCAGCATAAGAGAAAATCC+TGG | 0.623303 | 3.4:-98690095 | None:intergenic |
| ATTATACCCCTTCAGCCCGT+AGG | 0.626812 | 3.4:+98689956 | MS.gene064838:CDS |
| ATTTCACAGCAAAACCTCGA+GGG | 0.627533 | 3.4:-98688866 | None:intergenic |
| AGATATACCTCTAGATCCAA+CGG | 0.631010 | 3.4:-98687621 | None:intergenic |
| TTGTTGTGGTGAGCACACTT+GGG | 0.632968 | 3.4:-98690169 | None:intergenic |
| TGAAATTCATGAAACCCTCA+TGG | 0.640371 | 3.4:-98690195 | None:intergenic |
| TCTGAACTCCAGGAGCTCGT+AGG | 0.643310 | 3.4:-98688779 | None:intergenic |
| TCTAGATCCAACGGTTAGGG+AGG | 0.644041 | 3.4:-98687612 | None:intergenic |
| ACAGGAAGGAGAACATGTGA+AGG | 0.645069 | 3.4:-98689613 | None:intergenic |
| TGTGCCTGGTGTATATTACT+CGG | 0.653190 | 3.4:+98690054 | MS.gene064838:CDS |
| CATACAGGTCTTGAGTAGCA+TGG | 0.654493 | 3.4:-98689814 | None:intergenic |
| TTTCACTGGAAGCCCACATG+TGG | 0.658894 | 3.4:+98689737 | MS.gene064838:CDS |
| AAGTCTTAGTTACATCAAGT+GGG | 0.661737 | 3.4:-98689922 | None:intergenic |
| AACCCTCATGGTGATTGTTG+TGG | 0.663659 | 3.4:-98690183 | None:intergenic |
| CACCACAACAATCACCATGA+GGG | 0.667620 | 3.4:+98690181 | MS.gene064838:CDS |
| TCTACTGTCATTCATGAACG+TGG | 0.669221 | 3.4:+98688822 | MS.gene064838:CDS |
| ACCCACATCATCAAACAGGA+AGG | 0.673105 | 3.4:-98689627 | None:intergenic |
| CACGCAGAGAAATTAGCAGT+AGG | 0.674502 | 3.4:-98690444 | None:intergenic |
| ATAAAGCATCCACCCATCTG+CGG | 0.685814 | 3.4:-98691104 | None:intergenic |
| AGTATGAGATCCAGATGCTG+CGG | 0.691680 | 3.4:-98691152 | None:intergenic |
| AATTTCACAGCAAAACCTCG+AGG | 0.694899 | 3.4:-98688867 | None:intergenic |
| CTGCTGGTAACTATCCTGAG+TGG | 0.697296 | 3.4:+98689846 | MS.gene064838:CDS |
| AGACACTTCACACCACATGT+GGG | 0.702081 | 3.4:-98689749 | None:intergenic |
| TCATCCGAGTAATATACACC+AGG | 0.707390 | 3.4:-98690058 | None:intergenic |
| GAAGAGGCCATTAAGGTGGG+AGG | 0.707656 | 3.4:+98689779 | MS.gene064838:CDS |
| TCTCTTATGCTGATTCACAG+AGG | 0.708120 | 3.4:+98690104 | MS.gene064838:CDS |
| TCACCACAACAATCACCATG+AGG | 0.719886 | 3.4:+98690180 | MS.gene064838:CDS |
| TGTAACTAAGACTTGGCCTG+AGG | 0.723437 | 3.4:+98689931 | MS.gene064838:CDS |
| GAAACCTTGAGAGACCCTCG+AGG | 0.734649 | 3.4:+98688852 | MS.gene064838:CDS |
| TGTGAAATTCTACACCAGAG+AGG | 0.748378 | 3.4:+98688881 | MS.gene064838:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAAGATAAAAAAAA+GGG | - | chr3.4:98687669-98687688 | None:intergenic | 10.0% |
| !!! | CAACATTTTTTTTTTAAATA+AGG | - | chr3.4:98690576-98690595 | None:intergenic | 10.0% |
| !!! | CAATTTGTTTTTTTTTTTTT+TGG | + | chr3.4:98687480-98687499 | MS.gene064838:intron | 10.0% |
| !! | AAAAGAATAATTCAAAGATA+TGG | - | chr3.4:98687704-98687723 | None:intergenic | 15.0% |
| !! | CATCAAATAAGATAAAAAAA+AGG | - | chr3.4:98687670-98687689 | None:intergenic | 15.0% |
| !! | TAGCATTTAATTAAACAATT+TGG | + | chr3.4:98689104-98689123 | MS.gene064838:intron | 15.0% |
| !! | TGATATATGATAGAATATTA+TGG | + | chr3.4:98687987-98688006 | MS.gene064838:intron | 15.0% |
| !! | TTTAATTAAATGCTACATTT+GGG | - | chr3.4:98689099-98689118 | None:intergenic | 15.0% |
| !!! | ATTTTCATAAACCATAATAA+TGG | + | chr3.4:98688083-98688102 | MS.gene064838:intron | 15.0% |
| !!! | TAAGAATATTTCACAAATTT+TGG | - | chr3.4:98690627-98690646 | None:intergenic | 15.0% |
| !! | AAAAATATATGATCTTTCGT+TGG | + | chr3.4:98690660-98690679 | MS.gene064838:intron | 20.0% |
| !! | ATAAGATGTAATATCACATT+TGG | - | chr3.4:98690315-98690334 | None:intergenic | 20.0% |
| !! | GTTTAAACAATACCTATATT+GGG | + | chr3.4:98690876-98690895 | MS.gene064838:intron | 20.0% |
| !! | GTTTAATTAAATGCTACATT+TGG | - | chr3.4:98689100-98689119 | None:intergenic | 20.0% |
| !! | TAATTAAACAATTTGGTCTA+GGG | + | chr3.4:98689111-98689130 | MS.gene064838:intron | 20.0% |
| !! | TGTTAAATTATACGATTTCA+CGG | + | chr3.4:98687761-98687780 | MS.gene064838:intron | 20.0% |
| !! | TGTTTAAACAATACCTATAT+TGG | + | chr3.4:98690875-98690894 | MS.gene064838:intron | 20.0% |
| !! | TTAATTAAACAATTTGGTCT+AGG | + | chr3.4:98689110-98689129 | MS.gene064838:intron | 20.0% |
| !! | TTAATTAAATGCTACATTTG+GGG | - | chr3.4:98689098-98689117 | None:intergenic | 20.0% |
| !! | TTGAAATTTCAAAGTACAAA+GGG | - | chr3.4:98689211-98689230 | None:intergenic | 20.0% |
| !! | TTTAAACAATACCTATATTG+GGG | + | chr3.4:98690877-98690896 | MS.gene064838:intron | 20.0% |
| !!! | GACAATAATTGTTTTAAAAG+AGG | + | chr3.4:98689374-98689393 | MS.gene064838:intron | 20.0% |
| !!! | TGCAAATTAATTTGAAGTTT+AGG | + | chr3.4:98690755-98690774 | MS.gene064838:intron | 20.0% |
| !!! | TTATATTATTTTACCCCTTT+TGG | + | chr3.4:98688599-98688618 | MS.gene064838:intron | 20.0% |
| !!! | TTTGAAATTTCAAAGTACAA+AGG | - | chr3.4:98689212-98689231 | None:intergenic | 20.0% |
| ! | AAGTTATGATATGTCATAAC+TGG | - | chr3.4:98688335-98688354 | None:intergenic | 25.0% |
| ! | ACCAACTTAATATTTAACCA+AGG | - | chr3.4:98690736-98690755 | None:intergenic | 25.0% |
| ! | ACCTTGGTTAAATATTAAGT+TGG | + | chr3.4:98690732-98690751 | MS.gene064838:intron | 25.0% |
| ! | CAGTTATATCAAAAACAGTT+AGG | - | chr3.4:98688224-98688243 | None:intergenic | 25.0% |
| ! | CTTGCATATAAGTTATAAAC+GGG | + | chr3.4:98687930-98687949 | MS.gene064838:intron | 25.0% |
| ! | GAAGTAATTGACCTATAAAA+TGG | - | chr3.4:98690379-98690398 | None:intergenic | 25.0% |
| ! | GATATAACTGAAGCTATAAT+GGG | + | chr3.4:98688234-98688253 | MS.gene064838:intron | 25.0% |
| ! | GCTTGCATATAAGTTATAAA+CGG | + | chr3.4:98687929-98687948 | MS.gene064838:intron | 25.0% |
| ! | TATAAAATAAATGACGAGTG+AGG | + | chr3.4:98690827-98690846 | MS.gene064838:intron | 25.0% |
| ! | TATTGTTTAAACAGCTTTAC+TGG | - | chr3.4:98690868-98690887 | None:intergenic | 25.0% |
| ! | TCATAAACTCTCCATTATTA+TGG | - | chr3.4:98688097-98688116 | None:intergenic | 25.0% |
| ! | TGATATAACTGAAGCTATAA+TGG | + | chr3.4:98688233-98688252 | MS.gene064838:intron | 25.0% |
| ! | TTAATATTTAACCAAGGTAG+TGG | - | chr3.4:98690730-98690749 | None:intergenic | 25.0% |
| ! | TTTCATGAATTTCATTCACA+GGG | + | chr3.4:98690204-98690223 | MS.gene064838:CDS | 25.0% |
| !! | TCATATCAGTATTTTGTAAC+AGG | - | chr3.4:98691008-98691027 | None:intergenic | 25.0% |
| !!! | TTGTTTTAAAAGAGGTGATA+TGG | + | chr3.4:98689382-98689401 | MS.gene064838:intron | 25.0% |
| AAGTCTTAGTTACATCAAGT+GGG | - | chr3.4:98689925-98689944 | None:intergenic | 30.0% | |
| ATCTTTACCTTCTAATCACA+GGG | + | chr3.4:98689437-98689456 | MS.gene064838:intron | 30.0% | |
| ATGTTATTATGAGCAGCTTA+TGG | + | chr3.4:98688295-98688314 | MS.gene064838:intron | 30.0% | |
| CGAGTGACTAAATATAACTA+TGG | + | chr3.4:98689272-98689291 | MS.gene064838:intron | 30.0% | |
| GCAATCAATCGTAAAAATCA+CGG | - | chr3.4:98690549-98690568 | None:intergenic | 30.0% | |
| GGCGTGGTTTATATAAAAAT+TGG | - | chr3.4:98688436-98688455 | None:intergenic | 30.0% | |
| GTATTGTTGTATACCTTGTA+TGG | - | chr3.4:98687351-98687370 | None:intergenic | 30.0% | |
| GTTTCATGAATTTCATTCAC+AGG | + | chr3.4:98690203-98690222 | MS.gene064838:CDS | 30.0% | |
| TAACAGTGATTAAACTTTGC+TGG | - | chr3.4:98687746-98687765 | None:intergenic | 30.0% | |
| TATCTTGCCTGAAAAGATTA+AGG | - | chr3.4:98691077-98691096 | None:intergenic | 30.0% | |
| TATCTTTACCTTCTAATCAC+AGG | + | chr3.4:98689436-98689455 | MS.gene064838:intron | 30.0% | |
| TATTTAGTCGCTAGAAGATA+TGG | - | chr3.4:98688943-98688962 | None:intergenic | 30.0% | |
| TCGTAATTAGTTATCACCAT+TGG | + | chr3.4:98688487-98688506 | MS.gene064838:intron | 30.0% | |
| TGATAATCTTCCAAGAGAAT+TGG | - | chr3.4:98688630-98688649 | None:intergenic | 30.0% | |
| TGATCAACATGAATTGTGTT+TGG | + | chr3.4:98691025-98691044 | MS.gene064838:intron | 30.0% | |
| TGTAAAGTTCAGGGTTAATT+TGG | + | chr3.4:98688544-98688563 | MS.gene064838:intron | 30.0% | |
| TTCATTAATTTCTACCTCTC+TGG | - | chr3.4:98688898-98688917 | None:intergenic | 30.0% | |
| ! | TATCACATTTGGAGTTATCA+TGG | - | chr3.4:98690304-98690323 | None:intergenic | 30.0% |
| ! | TATCGAAACTAACCTTTTCA+CGG | - | chr3.4:98690470-98690489 | None:intergenic | 30.0% |
| ! | TTCTTTGCCTTAATCTTTTC+AGG | + | chr3.4:98691067-98691086 | MS.gene064838:intron | 30.0% |
| !! | ATGTTATCAGCTGTTTTCAT+AGG | + | chr3.4:98688143-98688162 | MS.gene064838:intron | 30.0% |
| !! | GTTTGGTGATGTCTAATATT+TGG | + | chr3.4:98691042-98691061 | MS.gene064838:intron | 30.0% |
| !! | TCGTACATGTGATACTTTTT+AGG | - | chr3.4:98688173-98688192 | None:intergenic | 30.0% |
| !! | TTGGTTGTTTCTAAAATGTG+TGG | - | chr3.4:98690608-98690627 | None:intergenic | 30.0% |
| !!! | GTGTTGTCTTCAATTTTTTC+AGG | - | chr3.4:98689154-98689173 | None:intergenic | 30.0% |
| AAAAGCTTGCCCAATTTGAT+AGG | + | chr3.4:98688658-98688677 | MS.gene064838:CDS | 35.0% | |
| AAAGCTTGCCCAATTTGATA+GGG | + | chr3.4:98688659-98688678 | MS.gene064838:CDS | 35.0% | |
| AAAGTTACCCTGTGATTAGA+AGG | - | chr3.4:98689447-98689466 | None:intergenic | 35.0% | |
| AACAATTTGGTCTAGGGATT+TGG | + | chr3.4:98689117-98689136 | MS.gene064838:intron | 35.0% | |
| AAGTAAATACACTAGCATCC+TGG | - | chr3.4:98689347-98689366 | None:intergenic | 35.0% | |
| AATAAGCTGAAAACAGCTCA+TGG | + | chr3.4:98688118-98688137 | MS.gene064838:intron | 35.0% | |
| AGAGAAATTAGCAGTAGGAA+TGG | - | chr3.4:98690442-98690461 | None:intergenic | 35.0% | |
| AGATATACCTCTAGATCCAA+CGG | - | chr3.4:98687624-98687643 | None:intergenic | 35.0% | |
| ATATACACCAGGCACAATAA+TGG | - | chr3.4:98690050-98690069 | None:intergenic | 35.0% | |
| ATCAGCATAAGAGAAAATCC+TGG | - | chr3.4:98690098-98690117 | None:intergenic | 35.0% | |
| ATGATAAGATGCTTCAAACC+AGG | + | chr3.4:98690077-98690096 | MS.gene064838:CDS | 35.0% | |
| CAAGTCTTAGTTACATCAAG+TGG | - | chr3.4:98689926-98689945 | None:intergenic | 35.0% | |
| CACTTGATGTAACTAAGACT+TGG | + | chr3.4:98689924-98689943 | MS.gene064838:CDS | 35.0% | |
| CATACATTCTTCCCCAATAT+AGG | - | chr3.4:98690891-98690910 | None:intergenic | 35.0% | |
| CATCTGTCTTGTAAAGTTCA+GGG | + | chr3.4:98688535-98688554 | MS.gene064838:intron | 35.0% | |
| CATGTGATTAAGGTCATGTT+TGG | + | chr3.4:98687821-98687840 | MS.gene064838:intron | 35.0% | |
| CTTGGAAGATTATCATCTTG+TGG | + | chr3.4:98688635-98688654 | MS.gene064838:CDS | 35.0% | |
| GAAAGTGAGAAAAGAAGTCA+AGG | - | chr3.4:98689586-98689605 | None:intergenic | 35.0% | |
| GAGAAATTAGCAGTAGGAAT+GGG | - | chr3.4:98690441-98690460 | None:intergenic | 35.0% | |
| TCAACTAAGCCTATACAAAC+AGG | + | chr3.4:98688198-98688217 | MS.gene064838:intron | 35.0% | |
| TGAAATTCATGAAACCCTCA+TGG | - | chr3.4:98690198-98690217 | None:intergenic | 35.0% | |
| TGGATGTCATAACGTTAAAC+TGG | - | chr3.4:98687799-98687818 | None:intergenic | 35.0% | |
| TTAAGCAACTCCAGTTTAGT+TGG | + | chr3.4:98689011-98689030 | MS.gene064838:intron | 35.0% | |
| ! | ATTTTGTAACAGGAACCTGT+CGG | - | chr3.4:98690998-98691017 | None:intergenic | 35.0% |
| ! | CACCATTGGTAATTACAACT+TGG | + | chr3.4:98688501-98688520 | MS.gene064838:intron | 35.0% |
| ! | CTATTTCTCTGCTTCTTTGT+CGG | - | chr3.4:98690705-98690724 | None:intergenic | 35.0% |
| !! | ATTATTTTACCCCTTTTGGC+AGG | + | chr3.4:98688603-98688622 | MS.gene064838:intron | 35.0% |
| !! | CCAGTTTAGTTGGTAAAATG+CGG | + | chr3.4:98689021-98689040 | MS.gene064838:intron | 35.0% |
| AAGAGGTGATATGGAACAGT+TGG | + | chr3.4:98689391-98689410 | MS.gene064838:intron | 40.0% | |
| AAGATAGATTTCTCCGCAGA+TGG | + | chr3.4:98691091-98691110 | MS.gene064838:CDS | 40.0% | |
| AAGTAGTTGCAGTTGTAACC+AGG | + | chr3.4:98689326-98689345 | MS.gene064838:intron | 40.0% | |
| AATTTCACAGCAAAACCTCG+AGG | - | chr3.4:98688870-98688889 | None:intergenic | 40.0% | |
| ACAAAGGGTTTAGACAATGC+TGG | - | chr3.4:98689196-98689215 | None:intergenic | 40.0% | |
| ACAGTTAGGCCTGTTTGTAT+AGG | - | chr3.4:98688210-98688229 | None:intergenic | 40.0% | |
| AGATAGATTTCTCCGCAGAT+GGG | + | chr3.4:98691092-98691111 | MS.gene064838:CDS | 40.0% | |
| AGGTCAATTACTTCCCTTCA+AGG | + | chr3.4:98690385-98690404 | MS.gene064838:intron | 40.0% | |
| ATCGTAAAAATCACGGCTGA+TGG | - | chr3.4:98690542-98690561 | None:intergenic | 40.0% | |
| ATTTCACAGCAAAACCTCGA+GGG | - | chr3.4:98688869-98688888 | None:intergenic | 40.0% | |
| CAAGATTATAGGCACATGGA+TGG | + | chr3.4:98689656-98689675 | MS.gene064838:CDS | 40.0% | |
| CACATATTCCCTGATCAACA+AGG | + | chr3.4:98689691-98689710 | MS.gene064838:CDS | 40.0% | |
| CAGCAGCAATTGAATCATAC+AGG | - | chr3.4:98689832-98689851 | None:intergenic | 40.0% | |
| CAGTGTACGTGAAATTTCAC+TGG | + | chr3.4:98689723-98689742 | MS.gene064838:CDS | 40.0% | |
| CATGACCTTAATCACATGCA+TGG | - | chr3.4:98687819-98687838 | None:intergenic | 40.0% | |
| CCAGAATTTGTAGTCCAGAA+AGG | - | chr3.4:98687569-98687588 | None:intergenic | 40.0% | |
| CCATCTGTCTTGTAAAGTTC+AGG | + | chr3.4:98688534-98688553 | MS.gene064838:intron | 40.0% | |
| CCATGTGCCTATAATCTTGT+GGG | - | chr3.4:98689655-98689674 | None:intergenic | 40.0% | |
| CCTGAACTTTACAAGACAGA+TGG | - | chr3.4:98688537-98688556 | None:intergenic | 40.0% | |
| CCTTTCTGGACTACAAATTC+TGG | + | chr3.4:98687566-98687585 | MS.gene064838:CDS | 40.0% | |
| CGACAAAGAAGCAGAGAAAT+AGG | + | chr3.4:98690703-98690722 | MS.gene064838:intron | 40.0% | |
| CGCCAAGTTGTAATTACCAA+TGG | - | chr3.4:98688506-98688525 | None:intergenic | 40.0% | |
| CTATGTTCTTGTTCAAGACC+AGG | - | chr3.4:98689985-98690004 | None:intergenic | 40.0% | |
| CTGTATGATTCAATTGCTGC+TGG | + | chr3.4:98689830-98689849 | MS.gene064838:CDS | 40.0% | |
| GAAGACAACACATGCATTGT+TGG | + | chr3.4:98689163-98689182 | MS.gene064838:intron | 40.0% | |
| GACATCCATGCATGTGATTA+AGG | + | chr3.4:98687811-98687830 | MS.gene064838:intron | 40.0% | |
| GATCCGTTCCCTATCAAATT+GGG | - | chr3.4:98688670-98688689 | None:intergenic | 40.0% | |
| GCCACATTTAGTTGAGTACT+GGG | + | chr3.4:98688453-98688472 | MS.gene064838:intron | 40.0% | |
| TCAAATTTGTCTTCGTGAGC+AGG | - | chr3.4:98689896-98689915 | None:intergenic | 40.0% | |
| TCATCCGAGTAATATACACC+AGG | - | chr3.4:98690061-98690080 | None:intergenic | 40.0% | |
| TCCATGTGCCTATAATCTTG+TGG | - | chr3.4:98689656-98689675 | None:intergenic | 40.0% | |
| TCTACTGTCATTCATGAACG+TGG | + | chr3.4:98688822-98688841 | MS.gene064838:CDS | 40.0% | |
| TGAACAAACAGTTTCCACTC+AGG | - | chr3.4:98689863-98689882 | None:intergenic | 40.0% | |
| TGCTTGAAGTTGTTCTGCTT+TGG | - | chr3.4:98690946-98690965 | None:intergenic | 40.0% | |
| TGTGAAATTCTACACCAGAG+AGG | + | chr3.4:98688881-98688900 | MS.gene064838:CDS | 40.0% | |
| TGTGCCTGGTGTATATTACT+CGG | + | chr3.4:98690054-98690073 | MS.gene064838:CDS | 40.0% | |
| TTAGCACACATGCAGCAATT+GGG | - | chr3.4:98688399-98688418 | None:intergenic | 40.0% | |
| TTGCCCAATTTGATAGGGAA+CGG | + | chr3.4:98688664-98688683 | MS.gene064838:CDS | 40.0% | |
| TTTCATTCACAGGGATGAAG+AGG | + | chr3.4:98690213-98690232 | MS.gene064838:CDS | 40.0% | |
| ! | CAGGAAAGTTGTTTCCAACA+AGG | - | chr3.4:98689472-98689491 | None:intergenic | 40.0% |
| ! | CCACATTTAGTTGAGTACTG+GGG | + | chr3.4:98688454-98688473 | MS.gene064838:intron | 40.0% |
| ! | CCGCATTTTACCAACTAAAC+TGG | - | chr3.4:98689024-98689043 | None:intergenic | 40.0% |
| ! | CGGGATGAATTTTCCAGATA+TGG | + | chr3.4:98689508-98689527 | MS.gene064838:CDS | 40.0% |
| ! | TATAGGCACATGGATGGTTT+TGG | + | chr3.4:98689662-98689681 | MS.gene064838:CDS | 40.0% |
| ! | TTAAGAGCATGGACCATATC+TGG | - | chr3.4:98689524-98689543 | None:intergenic | 40.0% |
| ! | TTTTGTAACAGGAACCTGTC+GGG | - | chr3.4:98690997-98691016 | None:intergenic | 40.0% |
| !! | TCCTTCCTGTTTGATGATGT+GGG | + | chr3.4:98689626-98689645 | MS.gene064838:CDS | 40.0% |
| !! | TCTCTTATGCTGATTCACAG+AGG | + | chr3.4:98690104-98690123 | MS.gene064838:CDS | 40.0% |
| !!! | CTTGAGCTCTGCCATTTTAT+AGG | + | chr3.4:98690365-98690384 | MS.gene064838:intron | 40.0% |
| AACCCTCATGGTGATTGTTG+TGG | - | chr3.4:98690186-98690205 | None:intergenic | 45.0% | |
| ACAGGAAGGAGAACATGTGA+AGG | - | chr3.4:98689616-98689635 | None:intergenic | 45.0% | |
| ACCCACATCATCAAACAGGA+AGG | - | chr3.4:98689630-98689649 | None:intergenic | 45.0% | |
| ACCTCTAGATCCAACGGTTA+GGG | - | chr3.4:98687618-98687637 | None:intergenic | 45.0% | |
| AGAATTGGACCTGCCAAAAG+GGG | - | chr3.4:98688615-98688634 | None:intergenic | 45.0% | |
| AGACACTTCACACCACATGT+GGG | - | chr3.4:98689752-98689771 | None:intergenic | 45.0% | |
| AGAGAATTGGACCTGCCAAA+AGG | - | chr3.4:98688617-98688636 | None:intergenic | 45.0% | |
| AGCAATTGGGAGGGTTTACT+TGG | - | chr3.4:98688386-98688405 | None:intergenic | 45.0% | |
| AGTATGAGATCCAGATGCTG+CGG | - | chr3.4:98691155-98691174 | None:intergenic | 45.0% | |
| ATTCCCTGATCAACAAGGCT+GGG | + | chr3.4:98689696-98689715 | MS.gene064838:CDS | 45.0% | |
| ATTGTTGTGGTGAGCACACT+TGG | - | chr3.4:98690173-98690192 | None:intergenic | 45.0% | |
| CAAATTCTGGTGCACCTGTT+TGG | + | chr3.4:98687579-98687598 | MS.gene064838:CDS | 45.0% | |
| CAAGGATTCTCCAATTCTCC+TGG | - | chr3.4:98689568-98689587 | None:intergenic | 45.0% | |
| CACCACAACAATCACCATGA+GGG | + | chr3.4:98690181-98690200 | MS.gene064838:CDS | 45.0% | |
| CACGCAGAGAAATTAGCAGT+AGG | - | chr3.4:98690447-98690466 | None:intergenic | 45.0% | |
| CAGGGTAACTTTGACCTTGT+TGG | + | chr3.4:98689455-98689474 | MS.gene064838:intron | 45.0% | |
| CATACAGGTCTTGAGTAGCA+TGG | - | chr3.4:98689817-98689836 | None:intergenic | 45.0% | |
| CCCACAAGATTATAGGCACA+TGG | + | chr3.4:98689652-98689671 | MS.gene064838:CDS | 45.0% | |
| CCCCAGTACTCAACTAAATG+TGG | - | chr3.4:98688457-98688476 | None:intergenic | 45.0% | |
| CCTGTCTTCTTCGTTCATGA+CGG | + | chr3.4:98689488-98689507 | MS.gene064838:CDS | 45.0% | |
| CGCCACATTTAGTTGAGTAC+TGG | + | chr3.4:98688452-98688471 | MS.gene064838:intron | 45.0% | |
| CTGTCTTCTTCGTTCATGAC+GGG | + | chr3.4:98689489-98689508 | MS.gene064838:CDS | 45.0% | |
| GAAAGGAGAATTGTAAGCGC+TGG | - | chr3.4:98687552-98687571 | None:intergenic | 45.0% | |
| GAACAGGATCATGCCTTGAA+GGG | - | chr3.4:98690401-98690420 | None:intergenic | 45.0% | |
| GAGAAATAGGTCCACTACCT+TGG | + | chr3.4:98690716-98690735 | MS.gene064838:intron | 45.0% | |
| GAGAACATGTGAAGGCTTTC+TGG | - | chr3.4:98689608-98689627 | None:intergenic | 45.0% | |
| GAGAATTGGACCTGCCAAAA+GGG | - | chr3.4:98688616-98688635 | None:intergenic | 45.0% | |
| GCAGGAAGTTGCAGATAGTT+TGG | - | chr3.4:98690142-98690161 | None:intergenic | 45.0% | |
| GCGCTTACAATTCTCCTTTC+TGG | + | chr3.4:98687552-98687571 | MS.gene064838:CDS | 45.0% | |
| GGATCCGTTCCCTATCAAAT+TGG | - | chr3.4:98688671-98688690 | None:intergenic | 45.0% | |
| GTACTCAACTAAATGTGGCG+TGG | - | chr3.4:98688452-98688471 | None:intergenic | 45.0% | |
| GTAGAGAAACGCACAATGAC+AGG | - | chr3.4:98688807-98688826 | None:intergenic | 45.0% | |
| GTAGGAAATCTGCACAAGTC+AGG | - | chr3.4:98688764-98688783 | None:intergenic | 45.0% | |
| GTTAGCACACATGCAGCAAT+TGG | - | chr3.4:98688400-98688419 | None:intergenic | 45.0% | |
| TACCTCTAGATCCAACGGTT+AGG | - | chr3.4:98687619-98687638 | None:intergenic | 45.0% | |
| TATTCCCTGATCAACAAGGC+TGG | + | chr3.4:98689695-98689714 | MS.gene064838:CDS | 45.0% | |
| TCACCACAACAATCACCATG+AGG | + | chr3.4:98690180-98690199 | MS.gene064838:CDS | 45.0% | |
| TCCTGTTCGTCATGCAGAAA+AGG | + | chr3.4:98690413-98690432 | MS.gene064838:CDS | 45.0% | |
| TCTCCAATTCTCCTGGATGT+GGG | - | chr3.4:98689561-98689580 | None:intergenic | 45.0% | |
| TGGGTGTCCCACAAGATTAT+AGG | + | chr3.4:98689645-98689664 | MS.gene064838:CDS | 45.0% | |
| TGTAACTAAGACTTGGCCTG+AGG | + | chr3.4:98689931-98689950 | MS.gene064838:CDS | 45.0% | |
| TTCTCCAATTCTCCTGGATG+TGG | - | chr3.4:98689562-98689581 | None:intergenic | 45.0% | |
| TTGTTGTGGTGAGCACACTT+GGG | - | chr3.4:98690172-98690191 | None:intergenic | 45.0% | |
| TTTGGCAGGTCCAATTCTCT+TGG | + | chr3.4:98688617-98688636 | MS.gene064838:intron | 45.0% | |
| ! | AAGCCTTATCCCACTATGTG+GGG | - | chr3.4:98688036-98688055 | None:intergenic | 45.0% |
| ! | ACCTTTTCTGCATGACGAAC+AGG | - | chr3.4:98690417-98690436 | None:intergenic | 45.0% |
| ! | ATAAAGCATCCACCCATCTG+CGG | - | chr3.4:98691107-98691126 | None:intergenic | 45.0% |
| ! | ATAGTGGGATAAGGCTTGGT+TGG | + | chr3.4:98688039-98688058 | MS.gene064838:intron | 45.0% |
| ! | ATGTGGTGTGAAGTGTCTGT+TGG | + | chr3.4:98689754-98689773 | MS.gene064838:CDS | 45.0% |
| ! | ATTCACAGAGGCACAGACTT+GGG | + | chr3.4:98690116-98690135 | MS.gene064838:CDS | 45.0% |
| ! | CAAGCCTTATCCCACTATGT+GGG | - | chr3.4:98688037-98688056 | None:intergenic | 45.0% |
| ! | GAGGAGTTGTTGTTCCAAAC+AGG | - | chr3.4:98687596-98687615 | None:intergenic | 45.0% |
| ! | TGAAGGGGTATAATGTCCTC+AGG | - | chr3.4:98689950-98689969 | None:intergenic | 45.0% |
| !! | AATTGTAAGCGCTGGATGGA+CGG | - | chr3.4:98687544-98687563 | None:intergenic | 45.0% |
| !! | CTCCTTCCTGTTTGATGATG+TGG | + | chr3.4:98689625-98689644 | MS.gene064838:CDS | 45.0% |
| !! | TTTCCCAGCCTTGTTGATCA+GGG | - | chr3.4:98689702-98689721 | None:intergenic | 45.0% |
| AAAACCTCGAGGGTCTCTCA+AGG | - | chr3.4:98688859-98688878 | None:intergenic | 50.0% | |
| AACAACTCCTCCCTAACCGT+TGG | + | chr3.4:98687605-98687624 | MS.gene064838:CDS | 50.0% | |
| ACACCAGGCACAATAATGGC+AGG | - | chr3.4:98690046-98690065 | None:intergenic | 50.0% | |
| AGAACGTGTTGTCCATGCCA+GGG | + | chr3.4:98688692-98688711 | MS.gene064838:CDS | 50.0% | |
| AGTCCCACATCCAGGAGAAT+TGG | + | chr3.4:98689555-98689574 | MS.gene064838:CDS | 50.0% | |
| ATGACAGGTGTCTGAACTCC+AGG | - | chr3.4:98688792-98688811 | None:intergenic | 50.0% | |
| ATTATACCCCTTCAGCCCGT+AGG | + | chr3.4:98689956-98689975 | MS.gene064838:CDS | 50.0% | |
| ATTCTCCTGGATGTGGGACT+TGG | - | chr3.4:98689555-98689574 | None:intergenic | 50.0% | |
| CACACATGCAGCAATTGGGA+GGG | - | chr3.4:98688395-98688414 | None:intergenic | 50.0% | |
| CAGAACAACTTCAAGCAGCC+TGG | + | chr3.4:98690949-98690968 | MS.gene064838:CDS | 50.0% | |
| CAGACACTTCACACCACATG+TGG | - | chr3.4:98689753-98689772 | None:intergenic | 50.0% | |
| CCAGATGCTGCGGATTTCAT+GGG | - | chr3.4:98691145-98691164 | None:intergenic | 50.0% | |
| CCGTCATGAACGAAGAAGAC+AGG | - | chr3.4:98689491-98689510 | None:intergenic | 50.0% | |
| CGAACAGGATCATGCCTTGA+AGG | - | chr3.4:98690402-98690421 | None:intergenic | 50.0% | |
| CTGCTGGTAACTATCCTGAG+TGG | + | chr3.4:98689846-98689865 | MS.gene064838:CDS | 50.0% | |
| CTTATCCCACTATGTGGGGT+CGG | - | chr3.4:98688032-98688051 | None:intergenic | 50.0% | |
| GAGGAAGAGGCCATTAAGGT+GGG | + | chr3.4:98689776-98689795 | MS.gene064838:CDS | 50.0% | |
| GAGGGTCTCTCAAGGTTTCA+GGG | - | chr3.4:98688851-98688870 | None:intergenic | 50.0% | |
| GCAGCATCTGGATCTCATAC+TGG | + | chr3.4:98691154-98691173 | MS.gene064838:CDS | 50.0% | |
| GGACACCCACATCATCAAAC+AGG | - | chr3.4:98689634-98689653 | None:intergenic | 50.0% | |
| GTTGGAGGAAGAGGCCATTA+AGG | + | chr3.4:98689772-98689791 | MS.gene064838:CDS | 50.0% | |
| GTTGGATCCTCCCACCTTAA+TGG | - | chr3.4:98689789-98689808 | None:intergenic | 50.0% | |
| TAGATTTCTCCGCAGATGGG+TGG | + | chr3.4:98691095-98691114 | MS.gene064838:CDS | 50.0% | |
| TCCAGATGCTGCGGATTTCA+TGG | - | chr3.4:98691146-98691165 | None:intergenic | 50.0% | |
| TCCCTAACCGTTGGATCTAG+AGG | + | chr3.4:98687614-98687633 | MS.gene064838:CDS | 50.0% | |
| TCTAGATCCAACGGTTAGGG+AGG | - | chr3.4:98687615-98687634 | None:intergenic | 50.0% | |
| TGGAGAGCGATACCGATCTT+GGG | + | chr3.4:98690969-98690988 | MS.gene064838:CDS | 50.0% | |
| TGGCATGGACAACACGTTCT+GGG | - | chr3.4:98688692-98688711 | None:intergenic | 50.0% | |
| TGGGGTTGGGTTTAAGAGCA+TGG | - | chr3.4:98689535-98689554 | None:intergenic | 50.0% | |
| TGTCCTGCCATTATTGTGCC+TGG | + | chr3.4:98690040-98690059 | MS.gene064838:CDS | 50.0% | |
| TTCTCCTGGATGTGGGACTT+GGG | - | chr3.4:98689554-98689573 | None:intergenic | 50.0% | |
| TTGAGTAGCATGGCTGTGGT+TGG | - | chr3.4:98689807-98689826 | None:intergenic | 50.0% | |
| TTTCACTGGAAGCCCACATG+TGG | + | chr3.4:98689737-98689756 | MS.gene064838:CDS | 50.0% | |
| TTTCTCTGCGTGCCGTGAAA+AGG | + | chr3.4:98690455-98690474 | MS.gene064838:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTATG+TGG | - | chr3.4:98688038-98688057 | None:intergenic | 50.0% |
| ! | CCACATAGTGGGATAAGGCT+TGG | + | chr3.4:98688035-98688054 | MS.gene064838:intron | 50.0% |
| ! | GAAGTGTCTGTTGGAGGAAG+AGG | + | chr3.4:98689763-98689782 | MS.gene064838:CDS | 50.0% |
| ! | GATTCACAGAGGCACAGACT+TGG | + | chr3.4:98690115-98690134 | MS.gene064838:CDS | 50.0% |
| ! | TGGTGTGAAGTGTCTGTTGG+AGG | + | chr3.4:98689757-98689776 | MS.gene064838:CDS | 50.0% |
| !! | CTTTCCCAGCCTTGTTGATC+AGG | - | chr3.4:98689703-98689722 | None:intergenic | 50.0% |
| !! | GGAGAATTGTAAGCGCTGGA+TGG | - | chr3.4:98687548-98687567 | None:intergenic | 50.0% |
| ACTATGTGGGGTCGGCTACA+TGG | - | chr3.4:98688024-98688043 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACATAG+TGG | + | chr3.4:98688023-98688042 | MS.gene064838:intron | 55.0% | |
| CAAGATCGGTATCGCTCTCC+AGG | - | chr3.4:98690970-98690989 | None:intergenic | 55.0% | |
| CAGAACGTGTTGTCCATGCC+AGG | + | chr3.4:98688691-98688710 | MS.gene064838:CDS | 55.0% | |
| CCCATGAAATCCGCAGCATC+TGG | + | chr3.4:98691142-98691161 | MS.gene064838:CDS | 55.0% | |
| CGAGGGTCTCTCAAGGTTTC+AGG | - | chr3.4:98688852-98688871 | None:intergenic | 55.0% | |
| CTGGAGAGCGATACCGATCT+TGG | + | chr3.4:98690968-98690987 | MS.gene064838:CDS | 55.0% | |
| CTGGCATGGACAACACGTTC+TGG | - | chr3.4:98688693-98688712 | None:intergenic | 55.0% | |
| GAAACCTTGAGAGACCCTCG+AGG | + | chr3.4:98688852-98688871 | MS.gene064838:CDS | 55.0% | |
| GAACGTGTTGTCCATGCCAG+GGG | + | chr3.4:98688693-98688712 | MS.gene064838:CDS | 55.0% | |
| GAAGAGGCCATTAAGGTGGG+AGG | + | chr3.4:98689779-98689798 | MS.gene064838:CDS | 55.0% | |
| GCACACATGCAGCAATTGGG+AGG | - | chr3.4:98688396-98688415 | None:intergenic | 55.0% | |
| GCAGATTTCCTACGAGCTCC+TGG | + | chr3.4:98688771-98688790 | MS.gene064838:CDS | 55.0% | |
| GGAGGAAGAGGCCATTAAGG+TGG | + | chr3.4:98689775-98689794 | MS.gene064838:CDS | 55.0% | |
| GGATTTCATGGGTGACGCGT+GGG | - | chr3.4:98691134-98691153 | None:intergenic | 55.0% | |
| GGTCTTGAGTAGCATGGCTG+TGG | - | chr3.4:98689811-98689830 | None:intergenic | 55.0% | |
| GTTCAAGACCAGGCGACCTA+CGG | - | chr3.4:98689975-98689994 | None:intergenic | 55.0% | |
| TCTCCTGGATGTGGGACTTG+GGG | - | chr3.4:98689553-98689572 | None:intergenic | 55.0% | |
| TCTGAACTCCAGGAGCTCGT+AGG | - | chr3.4:98688782-98688801 | None:intergenic | 55.0% | |
| TGGATGTGGGACTTGGGGTT+GGG | - | chr3.4:98689548-98689567 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACATAGT+GGG | + | chr3.4:98688024-98688043 | MS.gene064838:intron | 55.0% | |
| TTCAAGACCAGGCGACCTAC+GGG | - | chr3.4:98689974-98689993 | None:intergenic | 55.0% | |
| ! | CGACCCCACATAGTGGGATA+AGG | + | chr3.4:98688030-98688049 | MS.gene064838:intron | 55.0% |
| !! | GCACACTTGGGAGCATTAGC+AGG | - | chr3.4:98690160-98690179 | None:intergenic | 55.0% |
| ACCCTTTGCACTTGCTCCCC+TGG | - | chr3.4:98688712-98688731 | None:intergenic | 60.0% | |
| ACCTGTCGGGTGCCCAAGAT+CGG | - | chr3.4:98690984-98691003 | None:intergenic | 60.0% | |
| CAACCCCAAGTCCCACATCC+AGG | + | chr3.4:98689547-98689566 | MS.gene064838:CDS | 60.0% | |
| CGGATTTCATGGGTGACGCG+TGG | - | chr3.4:98691135-98691154 | None:intergenic | 60.0% | |
| CTGGATGTGGGACTTGGGGT+TGG | - | chr3.4:98689549-98689568 | None:intergenic | 60.0% | |
| GCCAGGGGAGCAAGTGCAAA+GGG | + | chr3.4:98688708-98688727 | MS.gene064838:CDS | 60.0% | |
| TGCCAGGGGAGCAAGTGCAA+AGG | + | chr3.4:98688707-98688726 | MS.gene064838:CDS | 60.0% | |
| TTCATGGGTGACGCGTGGGT+CGG | - | chr3.4:98691130-98691149 | None:intergenic | 60.0% | |
| TTGCACTTGCTCCCCTGGCA+TGG | - | chr3.4:98688707-98688726 | None:intergenic | 60.0% | |
| ACCGATCTTGGGCACCCGAC+AGG | + | chr3.4:98690980-98690999 | MS.gene064838:CDS | 65.0% | |
| ! | AGGCGACCTACGGGCTGAAG+GGG | - | chr3.4:98689965-98689984 | None:intergenic | 65.0% |
| ! | CAGGCGACCTACGGGCTGAA+GGG | - | chr3.4:98689966-98689985 | None:intergenic | 65.0% |
| CCTTCAGCCCGTAGGTCGCC+TGG | + | chr3.4:98689964-98689983 | MS.gene064838:CDS | 70.0% | |
| ! | CCAGGCGACCTACGGGCTGA+AGG | - | chr3.4:98689967-98689986 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98687342 | 98691182 | 98687342 | ID=MS.gene064838 |
| chr3.4 | mRNA | 98687342 | 98691182 | 98687342 | ID=MS.gene064838.t1;Parent=MS.gene064838 |
| chr3.4 | exon | 98687342 | 98687356 | 98687342 | ID=MS.gene064838.t1.exon1;Parent=MS.gene064838.t1 |
| chr3.4 | CDS | 98687342 | 98687356 | 98687342 | ID=cds.MS.gene064838.t1;Parent=MS.gene064838.t1 |
| chr3.4 | exon | 98687539 | 98687635 | 98687539 | ID=MS.gene064838.t1.exon2;Parent=MS.gene064838.t1 |
| chr3.4 | CDS | 98687539 | 98687635 | 98687539 | ID=cds.MS.gene064838.t1;Parent=MS.gene064838.t1 |
| chr3.4 | exon | 98688625 | 98688902 | 98688625 | ID=MS.gene064838.t1.exon3;Parent=MS.gene064838.t1 |
| chr3.4 | CDS | 98688625 | 98688902 | 98688625 | ID=cds.MS.gene064838.t1;Parent=MS.gene064838.t1 |
| chr3.4 | exon | 98689458 | 98690234 | 98689458 | ID=MS.gene064838.t1.exon4;Parent=MS.gene064838.t1 |
| chr3.4 | CDS | 98689458 | 98690234 | 98689458 | ID=cds.MS.gene064838.t1;Parent=MS.gene064838.t1 |
| chr3.4 | exon | 98690387 | 98690476 | 98690387 | ID=MS.gene064838.t1.exon5;Parent=MS.gene064838.t1 |
| chr3.4 | CDS | 98690387 | 98690476 | 98690387 | ID=cds.MS.gene064838.t1;Parent=MS.gene064838.t1 |
| chr3.4 | exon | 98690934 | 98691001 | 98690934 | ID=MS.gene064838.t1.exon6;Parent=MS.gene064838.t1 |
| chr3.4 | CDS | 98690934 | 98691001 | 98690934 | ID=cds.MS.gene064838.t1;Parent=MS.gene064838.t1 |
| chr3.4 | exon | 98691089 | 98691182 | 98691089 | ID=MS.gene064838.t1.exon7;Parent=MS.gene064838.t1 |
| chr3.4 | CDS | 98691089 | 98691182 | 98691089 | ID=cds.MS.gene064838.t1;Parent=MS.gene064838.t1 |
| Gene Sequence |
| Protein sequence |
