Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065400.t1 | XP_003608884.1 | 96.4 | 112 | 4 | 0 | 1 | 112 | 80 | 191 | 1.40E-54 | 222.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065400.t1 | P47923 | 94.6 | 112 | 6 | 0 | 1 | 112 | 80 | 191 | 8.6e-56 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065400.t1 | B7FMP6 | 96.4 | 112 | 4 | 0 | 1 | 112 | 80 | 191 | 1.0e-54 | 222.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049285 | MS.gene065400 | 0.821111 | 4.80E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene065400 | 0.823637 | 1.24E-53 | -1.69E-46 |
| MS.gene050163 | MS.gene065400 | 0.832488 | 9.18E-56 | -1.69E-46 |
| MS.gene050165 | MS.gene065400 | 0.818626 | 1.78E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene065400 | 0.805682 | 1.19E-49 | -1.69E-46 |
| MS.gene050518 | MS.gene065400 | 0.810714 | 1.00E-50 | -1.69E-46 |
| MS.gene05100 | MS.gene065400 | 0.836631 | 8.36E-57 | -1.69E-46 |
| MS.gene052916 | MS.gene065400 | 0.831146 | 1.97E-55 | -1.69E-46 |
| MS.gene053213 | MS.gene065400 | 0.82978 | 4.25E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene065400 | 0.827075 | 1.91E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene065400 | 0.839478 | 1.55E-57 | -1.69E-46 |
| MS.gene054954 | MS.gene065400 | 0.806236 | 9.07E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene065400 | 0.825276 | 5.12E-54 | -1.69E-46 |
| MS.gene055499 | MS.gene065400 | 0.80375 | 3.00E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene065400 | 0.827787 | 1.29E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene065400 | 0.819235 | 1.29E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene065400 | 0.814976 | 1.17E-51 | -1.69E-46 |
| MS.gene057148 | MS.gene065400 | 0.800222 | 1.59E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene065400 | 0.822829 | 1.92E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene065400 | 0.814535 | 1.47E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene065400 | 0.820371 | 7.11E-53 | -1.69E-46 |
| MS.gene060337 | MS.gene065400 | -0.813065 | 3.09E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene065400 | 0.824278 | 8.80E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065400.t1 | MTR_4g104030 | 96.429 | 112 | 4 | 0 | 1 | 112 | 80 | 191 | 6.30e-77 | 228 |
| MS.gene065400.t1 | MTR_8g007235 | 68.807 | 109 | 34 | 0 | 4 | 112 | 3 | 111 | 1.91e-51 | 160 |
| MS.gene065400.t1 | MTR_8g099450 | 57.658 | 111 | 47 | 0 | 2 | 112 | 83 | 193 | 9.09e-46 | 149 |
| MS.gene065400.t1 | MTR_8g021233 | 28.571 | 98 | 70 | 0 | 2 | 99 | 70 | 167 | 3.91e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065400.t1 | AT5G63310 | 85.714 | 112 | 16 | 0 | 1 | 112 | 81 | 192 | 2.77e-67 | 203 |
| MS.gene065400.t1 | AT4G09320 | 65.455 | 110 | 38 | 0 | 3 | 112 | 1 | 110 | 5.66e-51 | 159 |
| MS.gene065400.t1 | AT4G11010 | 58.559 | 111 | 46 | 0 | 2 | 112 | 87 | 197 | 6.74e-46 | 149 |
| MS.gene065400.t1 | AT4G23900 | 56.757 | 111 | 48 | 0 | 2 | 112 | 86 | 196 | 1.04e-43 | 144 |
| MS.gene065400.t1 | AT4G23895 | 56.757 | 111 | 48 | 0 | 2 | 112 | 316 | 426 | 2.53e-41 | 143 |
| MS.gene065400.t1 | AT1G17410 | 38.095 | 105 | 62 | 1 | 4 | 105 | 33 | 137 | 1.19e-16 | 72.8 |
| MS.gene065400.t1 | AT1G17410 | 39.000 | 100 | 58 | 1 | 9 | 105 | 1 | 100 | 2.66e-16 | 70.9 |
| MS.gene065400.t1 | AT1G17410 | 39.560 | 91 | 55 | 0 | 9 | 99 | 1 | 91 | 1.06e-15 | 68.9 |
Find 40 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGGGCCCCGTTGTGTCTA+TGG | 0.249639 | 8.3:-18275349 | MS.gene065400:intron |
| CCATCAGCACGTAAGCTTAT+AGG | 0.269590 | 8.3:-18275216 | MS.gene065400:CDS |
| GGAAGAAAGACTTCTGATTT+AGG | 0.280449 | 8.3:+18275394 | None:intergenic |
| TTCCATTTGCTGCAGCTCTA+TGG | 0.293061 | 8.3:-18273958 | MS.gene065400:CDS |
| AGTTGACCAGACTTATATTA+TGG | 0.331268 | 8.3:-18276921 | MS.gene065400:CDS |
| AGGTGGGTGAAATTATTTCT+AGG | 0.357399 | 8.3:-18276757 | MS.gene065400:CDS |
| GGAGACTTTGCTGTTGAAAC+AGG | 0.369768 | 8.3:-18275153 | MS.gene065400:CDS |
| CTGATTGACTATATTACTTC+GGG | 0.369900 | 8.3:-18275366 | MS.gene065400:CDS |
| AACCATAGAGCTGCAGCAAA+TGG | 0.406290 | 8.3:+18273956 | None:intergenic |
| GTAATATAGTCAATCAGCTT+AGG | 0.409337 | 8.3:+18275372 | None:intergenic |
| TATTTCTAGGTTTGAGAAGA+AGG | 0.414911 | 8.3:-18276744 | MS.gene065400:CDS |
| TGCTGCAGCTCTATGGTTCA+AGG | 0.433624 | 8.3:-18273951 | MS.gene065400:CDS |
| GCAGAACCAGGCACAATAAG+AGG | 0.440871 | 8.3:-18275174 | MS.gene065400:CDS |
| GTTTATTATTCTCTTAGCCA+TGG | 0.442524 | 8.3:+18273893 | None:intergenic |
| AAGTCTCCTCTTATTGTGCC+TGG | 0.451702 | 8.3:+18275168 | None:intergenic |
| TGCAAGGCTTGGGAGGGTGT+TGG | 0.459104 | 8.3:-18275246 | MS.gene065400:intron |
| AGTTATACCATAGACACAAC+GGG | 0.464995 | 8.3:+18275342 | None:intergenic |
| GCTGATTGACTATATTACTT+CGG | 0.470279 | 8.3:-18275367 | MS.gene065400:CDS |
| AAGACCACGTTGCACGCCAT+CGG | 0.478860 | 8.3:+18276892 | None:intergenic |
| GTTTCACCATAATATAAGTC+TGG | 0.480267 | 8.3:+18276915 | None:intergenic |
| TAATATAGTCAATCAGCTTA+GGG | 0.480624 | 8.3:+18275373 | None:intergenic |
| AGACCACGTTGCACGCCATC+GGG | 0.491598 | 8.3:+18276893 | None:intergenic |
| TTATGTTTGCAAGGCTTGGG+AGG | 0.497838 | 8.3:-18275253 | MS.gene065400:intron |
| ATTTCTAGGTTTGAGAAGAA+GGG | 0.506715 | 8.3:-18276743 | MS.gene065400:CDS |
| ATTCTCTTAGCCATGGATGT+AGG | 0.509659 | 8.3:+18273900 | None:intergenic |
| CTTAGCCATGGATGTAGGAC+AGG | 0.510478 | 8.3:+18273905 | None:intergenic |
| ATGGTTTCAGGAGCATTACA+AGG | 0.519469 | 8.3:-18275418 | MS.gene065400:intron |
| CCTATAAGCTTACGTGCTGA+TGG | 0.530791 | 8.3:+18275216 | None:intergenic |
| TATGTTTGCAAGGCTTGGGA+GGG | 0.532452 | 8.3:-18275252 | MS.gene065400:intron |
| AGGAAGGCGAATTATGTGAA+TGG | 0.560837 | 8.3:-18273931 | MS.gene065400:CDS |
| GTGCCTGGTTCTGCTTGCAG+AGG | 0.569047 | 8.3:+18275183 | None:intergenic |
| AATCCTCTGCAAGCAGAACC+AGG | 0.581765 | 8.3:-18275186 | MS.gene065400:CDS |
| GGACTCCTGTCCTACATCCA+TGG | 0.592922 | 8.3:-18273910 | MS.gene065400:CDS |
| TATATTATGGTGAAACCCGA+TGG | 0.602776 | 8.3:-18276908 | MS.gene065400:CDS |
| ATGCTCTAAAGAATTAGCTG+AGG | 0.624258 | 8.3:-18276690 | MS.gene065400:intron |
| ACTTTGCTGTTGAAACAGGA+AGG | 0.628376 | 8.3:-18275149 | MS.gene065400:intron |
| GCAGCTCTATGGTTCAAGGA+AGG | 0.644056 | 8.3:-18273947 | MS.gene065400:CDS |
| GAGTTATACCATAGACACAA+CGG | 0.655073 | 8.3:+18275341 | None:intergenic |
| AAACCCGATGGCGTGCAACG+TGG | 0.663446 | 8.3:-18276896 | MS.gene065400:CDS |
| GTTATACCATAGACACAACG+GGG | 0.788135 | 8.3:+18275343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATGCTAAAATAGAAAA+AGG | + | chr8.3:18276229-18276248 | None:intergenic | 15.0% |
| !! | TTCAATATATTACATTGATA+TGG | - | chr8.3:18274279-18274298 | MS.gene065400:intron | 15.0% |
| !! | AACTAAATATCGACAAAATA+AGG | + | chr8.3:18276761-18276780 | None:intergenic | 20.0% |
| !! | AAGAAAAATATAAGTTGCAA+AGG | - | chr8.3:18276680-18276699 | MS.gene065400:intron | 20.0% |
| !! | AGAAAAATATAAGTTGCAAA+GGG | - | chr8.3:18276681-18276700 | MS.gene065400:intron | 20.0% |
| !! | CCTGCTAATATATAAATTAA+CGG | + | chr8.3:18275980-18275999 | None:intergenic | 20.0% |
| !! | GAAACAAAAATTGAAGTTTA+AGG | - | chr8.3:18274023-18274042 | MS.gene065400:intron | 20.0% |
| !! | TGACTTATTGTGATTATTTA+TGG | - | chr8.3:18275395-18275414 | MS.gene065400:CDS | 20.0% |
| !! | TGCATAGATTGAATTTATTT+AGG | + | chr8.3:18274704-18274723 | None:intergenic | 20.0% |
| !! | TTGAATTATGTATTGAATAC+AGG | - | chr8.3:18276485-18276504 | MS.gene065400:intron | 20.0% |
| !!! | ATTATTATGAAAAGCACAAT+TGG | + | chr8.3:18274340-18274359 | None:intergenic | 20.0% |
| !!! | TAATTGTTGTTTTGTTGAAT+TGG | - | chr8.3:18274049-18274068 | MS.gene065400:intron | 20.0% |
| !!! | TGCTTTTATTCATTTAATGA+GGG | + | chr8.3:18275047-18275066 | None:intergenic | 20.0% |
| !!! | TTATTATGAAAAGCACAATT+GGG | + | chr8.3:18274339-18274358 | None:intergenic | 20.0% |
| !!! | TTTTGTCGATATTTAGTTAT+AGG | - | chr8.3:18276763-18276782 | MS.gene065400:intron | 20.0% |
| ! | AAAAATATAAGTTGCAAAGG+GGG | - | chr8.3:18276683-18276702 | MS.gene065400:intron | 25.0% |
| ! | AGAATCAAGATAAGATTCAT+AGG | - | chr8.3:18275752-18275771 | MS.gene065400:intron | 25.0% |
| ! | AGTAAGAAACCATGAAAATA+TGG | + | chr8.3:18275268-18275287 | None:intergenic | 25.0% |
| ! | CATGAAAATATGGATACAAT+TGG | + | chr8.3:18275258-18275277 | None:intergenic | 25.0% |
| ! | CCAATTTAATAGATTACTAC+AGG | + | chr8.3:18274982-18275001 | None:intergenic | 25.0% |
| ! | CCGTTAATTTATATATTAGC+AGG | - | chr8.3:18275977-18275996 | MS.gene065400:intron | 25.0% |
| ! | CCTGTAGTAATCTATTAAAT+TGG | - | chr8.3:18274979-18274998 | MS.gene065400:intron | 25.0% |
| ! | GAAAAATATAAGTTGCAAAG+GGG | - | chr8.3:18276682-18276701 | MS.gene065400:intron | 25.0% |
| ! | GAATCAAGATAAGATTCATA+GGG | - | chr8.3:18275753-18275772 | MS.gene065400:intron | 25.0% |
| ! | TAAGTCTACTCTATATCATA+TGG | + | chr8.3:18275294-18275313 | None:intergenic | 25.0% |
| ! | TAATATAGTCAATCAGCTTA+GGG | + | chr8.3:18275462-18275481 | None:intergenic | 25.0% |
| ! | TTAAAGAATCACAGTATTAC+AGG | + | chr8.3:18276841-18276860 | None:intergenic | 25.0% |
| ! | TTATAAACTTATGCTGAAGA+GGG | + | chr8.3:18276310-18276329 | None:intergenic | 25.0% |
| ! | TTCATTTAATGAGGGTTAAT+AGG | + | chr8.3:18275039-18275058 | None:intergenic | 25.0% |
| ! | TTCTTGTACTATCAAGTTTA+TGG | + | chr8.3:18274886-18274905 | None:intergenic | 25.0% |
| ! | TTGTGATTATTTATGGTTTC+AGG | - | chr8.3:18275402-18275421 | MS.gene065400:CDS | 25.0% |
| ! | TTTATAAACTTATGCTGAAG+AGG | + | chr8.3:18276311-18276330 | None:intergenic | 25.0% |
| !! | ATACAATTGGATTTTGTAAC+TGG | + | chr8.3:18275245-18275264 | None:intergenic | 25.0% |
| !! | CAATTGTATCCATATTTTCA+TGG | - | chr8.3:18275256-18275275 | MS.gene065400:intron | 25.0% |
| !! | GTGCTTTTATTCATTTAATG+AGG | + | chr8.3:18275048-18275067 | None:intergenic | 25.0% |
| !!! | AAGAAGGGTTTTAAGTTAAT+TGG | - | chr8.3:18274104-18274123 | MS.gene065400:intron | 25.0% |
| !!! | AAGATCTTTTAAGATACTTC+CGG | - | chr8.3:18274452-18274471 | MS.gene065400:intron | 25.0% |
| !!! | GTTAATTTGCTATTTACACA+TGG | - | chr8.3:18275371-18275390 | MS.gene065400:CDS | 25.0% |
| !!! | TTGTTTTGTTGAATTGGTTT+AGG | - | chr8.3:18274055-18274074 | MS.gene065400:intron | 25.0% |
| AAACCTCTTGTGTAAAAAAC+AGG | - | chr8.3:18276137-18276156 | MS.gene065400:intron | 30.0% | |
| AACCTCTTGTGTAAAAAACA+GGG | - | chr8.3:18276138-18276157 | MS.gene065400:intron | 30.0% | |
| AACTATACTCAATCCTTTCA+TGG | + | chr8.3:18275174-18275193 | None:intergenic | 30.0% | |
| AATAACAAGCTATACCTTAG+AGG | + | chr8.3:18274514-18274533 | None:intergenic | 30.0% | |
| ACACAAACGAGTTAAATTTC+AGG | + | chr8.3:18276413-18276432 | None:intergenic | 30.0% | |
| AGAGTCAACAATCTTATTGA+TGG | + | chr8.3:18274368-18274387 | None:intergenic | 30.0% | |
| AGTTGACCAGACTTATATTA+TGG | - | chr8.3:18273911-18273930 | MS.gene065400:CDS | 30.0% | |
| ATAACAAGCTATACCTTAGA+GGG | + | chr8.3:18274513-18274532 | None:intergenic | 30.0% | |
| ATGAACTTCACAATATGTCA+TGG | + | chr8.3:18275098-18275117 | None:intergenic | 30.0% | |
| CACTTCAATTTCATATGTTC+TGG | - | chr8.3:18273982-18274001 | MS.gene065400:intron | 30.0% | |
| CATATTGTGAAGTTCATTCA+AGG | - | chr8.3:18275101-18275120 | MS.gene065400:intron | 30.0% | |
| CTAAGATAGGTATAGGTATA+CGG | - | chr8.3:18274753-18274772 | MS.gene065400:intron | 30.0% | |
| CTGATTGACTATATTACTTC+GGG | - | chr8.3:18275466-18275485 | MS.gene065400:intron | 30.0% | |
| CTTATCTTGATTCTTGACTA+AGG | + | chr8.3:18275746-18275765 | None:intergenic | 30.0% | |
| CTTGACAAAATTACAAACTC+TGG | + | chr8.3:18276348-18276367 | None:intergenic | 30.0% | |
| GCTGATTGACTATATTACTT+CGG | - | chr8.3:18275465-18275484 | MS.gene065400:intron | 30.0% | |
| GTAATATAGTCAATCAGCTT+AGG | + | chr8.3:18275463-18275482 | None:intergenic | 30.0% | |
| GTTTCACCATAATATAAGTC+TGG | + | chr8.3:18273920-18273939 | None:intergenic | 30.0% | |
| TAAGATAGGTATAGGTATAC+GGG | - | chr8.3:18274754-18274773 | MS.gene065400:intron | 30.0% | |
| TAGAATTCCCAAAAAAGTTG+TGG | - | chr8.3:18276278-18276297 | MS.gene065400:intron | 30.0% | |
| TATTGAATACAGGCAAAACT+TGG | - | chr8.3:18276495-18276514 | MS.gene065400:intron | 30.0% | |
| TCTGAATATGTTTCCATGAA+AGG | - | chr8.3:18275158-18275177 | MS.gene065400:CDS | 30.0% | |
| TTTGGCAGGAATATTATTCA+TGG | - | chr8.3:18275830-18275849 | MS.gene065400:intron | 30.0% | |
| ! | AAGATCTTGTGATGAACTTT+TGG | - | chr8.3:18275812-18275831 | MS.gene065400:intron | 30.0% |
| ! | AATTGGATTTTGTAACTGGA+TGG | + | chr8.3:18275241-18275260 | None:intergenic | 30.0% |
| ! | ATCCTTTTCGTTGCATTTAT+TGG | + | chr8.3:18275926-18275945 | None:intergenic | 30.0% |
| ! | ATTTCTAGGTTTGAGAAGAA+GGG | - | chr8.3:18274089-18274108 | MS.gene065400:intron | 30.0% |
| ! | TCCTTTTCGTTGCATTTATT+GGG | + | chr8.3:18275925-18275944 | None:intergenic | 30.0% |
| ! | TTTGTTGAATTGGTTTAGGT+GGG | - | chr8.3:18274059-18274078 | MS.gene065400:intron | 30.0% |
| !! | TATTTCTAGGTTTGAGAAGA+AGG | - | chr8.3:18274088-18274107 | MS.gene065400:intron | 30.0% |
| !! | TTTTGTTGAATTGGTTTAGG+TGG | - | chr8.3:18274058-18274077 | MS.gene065400:intron | 30.0% |
| !!! | CTAATTATGGGTTTTAGGTA+GGG | - | chr8.3:18274932-18274951 | MS.gene065400:intron | 30.0% |
| !!! | GTCTATTCCACAACTTTTTT+GGG | + | chr8.3:18276288-18276307 | None:intergenic | 30.0% |
| !!! | TTTCTGGTTTTATGTTTGCA+AGG | - | chr8.3:18275570-18275589 | MS.gene065400:intron | 30.0% |
| ACAAGAAAGTCTCTTCAAGA+TGG | - | chr8.3:18274899-18274918 | MS.gene065400:intron | 35.0% | |
| ACCCAATAAATGCAACGAAA+AGG | - | chr8.3:18275921-18275940 | MS.gene065400:intron | 35.0% | |
| AGAGATCAAACATGAATGTC+AGG | - | chr8.3:18274852-18274871 | MS.gene065400:intron | 35.0% | |
| AGTTATACCATAGACACAAC+GGG | + | chr8.3:18275493-18275512 | None:intergenic | 35.0% | |
| AGTTTGTAAAGGAGAATGAC+AGG | - | chr8.3:18274255-18274274 | MS.gene065400:intron | 35.0% | |
| ATTTGTCCTAGAAACAACCT+TGG | - | chr8.3:18276057-18276076 | MS.gene065400:intron | 35.0% | |
| CAACGAGATTGATCATTGAA+TGG | - | chr8.3:18276719-18276738 | MS.gene065400:CDS | 35.0% | |
| CAATCTATGCAACAACAAGA+TGG | - | chr8.3:18274713-18274732 | MS.gene065400:intron | 35.0% | |
| CAATCTCGTTGTATCTAAGA+TGG | + | chr8.3:18276710-18276729 | None:intergenic | 35.0% | |
| CAATTGGAGAGGAACTAAAT+GGG | - | chr8.3:18274643-18274662 | MS.gene065400:intron | 35.0% | |
| CCTACCTAAAACCCATAATT+AGG | + | chr8.3:18274934-18274953 | None:intergenic | 35.0% | |
| CTGAATCATGACACTATAAG+AGG | + | chr8.3:18275897-18275916 | None:intergenic | 35.0% | |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr8.3:18276143-18276162 | MS.gene065400:intron | 35.0% | |
| GAGATCAAACATGAATGTCA+GGG | - | chr8.3:18274853-18274872 | MS.gene065400:intron | 35.0% | |
| GAGTGTTAACAATACCACTA+TGG | + | chr8.3:18274489-18274508 | None:intergenic | 35.0% | |
| GAGTTATACCATAGACACAA+CGG | + | chr8.3:18275494-18275513 | None:intergenic | 35.0% | |
| GCACAAGTTGTATAAACTGT+TGG | - | chr8.3:18276548-18276567 | MS.gene065400:intron | 35.0% | |
| GGAAGAAAGACTTCTGATTT+AGG | + | chr8.3:18275441-18275460 | None:intergenic | 35.0% | |
| GTTATTGTCATGTGACTGAA+AGG | - | chr8.3:18276092-18276111 | MS.gene065400:intron | 35.0% | |
| GTTTGTAAAGGAGAATGACA+GGG | - | chr8.3:18274256-18274275 | MS.gene065400:intron | 35.0% | |
| TAAAACCCATAATTAGGCCA+TGG | + | chr8.3:18274928-18274947 | None:intergenic | 35.0% | |
| TACCTGTTGAATGTACTTTC+TGG | - | chr8.3:18275554-18275573 | MS.gene065400:intron | 35.0% | |
| TAGTATCCCATTCTCAATGA+GGG | - | chr8.3:18275521-18275540 | MS.gene065400:intron | 35.0% | |
| TATATTATGGTGAAACCCGA+TGG | - | chr8.3:18273924-18273943 | MS.gene065400:CDS | 35.0% | |
| TCAATTGGAGAGGAACTAAA+TGG | - | chr8.3:18274642-18274661 | MS.gene065400:intron | 35.0% | |
| TGCAGCAAATGGAAATAACT+GGG | + | chr8.3:18276868-18276887 | None:intergenic | 35.0% | |
| ! | AACCAGAAAGTACATTCAAC+AGG | + | chr8.3:18275559-18275578 | None:intergenic | 35.0% |
| ! | AGGTGGGTGAAATTATTTCT+AGG | - | chr8.3:18274075-18274094 | MS.gene065400:intron | 35.0% |
| ! | ATGGCCTAATTATGGGTTTT+AGG | - | chr8.3:18274927-18274946 | MS.gene065400:intron | 35.0% |
| ! | ATTCATAGGGTGTGTTTTTC+TGG | - | chr8.3:18275766-18275785 | MS.gene065400:intron | 35.0% |
| ! | GTCTTGTCTTTTATGCAGAT+TGG | + | chr8.3:18274682-18274701 | None:intergenic | 35.0% |
| ! | GTTTTATGTTTGCAAGGCTT+GGG | - | chr8.3:18275576-18275595 | MS.gene065400:intron | 35.0% |
| ! | TTGGCATGCATAAGCATTTT+AGG | - | chr8.3:18276514-18276533 | MS.gene065400:intron | 35.0% |
| !! | ATGCTCTAAAGAATTAGCTG+AGG | - | chr8.3:18274142-18274161 | MS.gene065400:intron | 35.0% |
| !! | TAAGATTGTTGACTCTTAGC+AGG | - | chr8.3:18274372-18274391 | MS.gene065400:intron | 35.0% |
| !! | TTTCTTGTTGTTACGACACA+GGG | - | chr8.3:18274229-18274248 | MS.gene065400:intron | 35.0% |
| !!! | AGGTATGGGTTTTGTTCAAA+AGG | + | chr8.3:18276619-18276638 | None:intergenic | 35.0% |
| !!! | CCTAATTATGGGTTTTAGGT+AGG | - | chr8.3:18274931-18274950 | MS.gene065400:intron | 35.0% |
| !!! | GGTCTATTCCACAACTTTTT+TGG | + | chr8.3:18276289-18276308 | None:intergenic | 35.0% |
| !!! | GTGTTTTTCTGGTTGATTTG+AGG | - | chr8.3:18275777-18275796 | MS.gene065400:intron | 35.0% |
| !!! | TACCCTGTTTTTTACACAAG+AGG | + | chr8.3:18276143-18276162 | None:intergenic | 35.0% |
| !!! | TTACACAAGAGGTTTTTTCC+TGG | + | chr8.3:18276132-18276151 | None:intergenic | 35.0% |
| !!! | TTGCTTCTTTTTCGGTAACA+GGG | + | chr8.3:18276577-18276596 | None:intergenic | 35.0% |
| !!! | TTTTAAGATACTTCCGGATC+AGG | - | chr8.3:18274458-18274477 | MS.gene065400:intron | 35.0% |
| !!! | TTTTCTTGTTGTTACGACAC+AGG | - | chr8.3:18274228-18274247 | MS.gene065400:intron | 35.0% |
| AAACCCAACAGTGTAAAGAG+TGG | - | chr8.3:18276647-18276666 | MS.gene065400:intron | 40.0% | |
| AAACTCTGGATTCTACTAGC+AGG | + | chr8.3:18276334-18276353 | None:intergenic | 40.0% | |
| ACACACAATTCTGCGAACAT+AGG | + | chr8.3:18276436-18276455 | None:intergenic | 40.0% | |
| ACACAGGGTTCAGTTTGTAA+AGG | - | chr8.3:18274244-18274263 | MS.gene065400:intron | 40.0% | |
| AGGAAGGCGAATTATGTGAA+TGG | - | chr8.3:18276901-18276920 | MS.gene065400:CDS | 40.0% | |
| ATAACTTTACCGTTGCACCA+AGG | + | chr8.3:18276077-18276096 | None:intergenic | 40.0% | |
| ATGCTCATCAAAGCAAACTG+TGG | + | chr8.3:18276252-18276271 | None:intergenic | 40.0% | |
| CAACCACTCTTTACACTGTT+GGG | + | chr8.3:18276653-18276672 | None:intergenic | 40.0% | |
| CACTATGGTATATCCTGATC+CGG | + | chr8.3:18274474-18274493 | None:intergenic | 40.0% | |
| CATTGAGAATGGGATACTAG+TGG | + | chr8.3:18275520-18275539 | None:intergenic | 40.0% | |
| CCAATTGAACACCCTTACAA+TGG | + | chr8.3:18274630-18274649 | None:intergenic | 40.0% | |
| CTAGTATCCCATTCTCAATG+AGG | - | chr8.3:18275520-18275539 | MS.gene065400:intron | 40.0% | |
| CTGAAGAGACACTGTTGTAA+GGG | - | chr8.3:18274551-18274570 | MS.gene065400:intron | 40.0% | |
| CTGCAGCAAATGGAAATAAC+TGG | + | chr8.3:18276869-18276888 | None:intergenic | 40.0% | |
| GCAGAATTGTGTGTAAGTGT+GGG | - | chr8.3:18276442-18276461 | MS.gene065400:intron | 40.0% | |
| GGATACCATGGCCTAATTAT+GGG | - | chr8.3:18274920-18274939 | MS.gene065400:intron | 40.0% | |
| GTAACTGGATGGTTGGAATT+AGG | + | chr8.3:18275230-18275249 | None:intergenic | 40.0% | |
| GTGAAACCCTCATTGAGAAT+GGG | + | chr8.3:18275530-18275549 | None:intergenic | 40.0% | |
| GTTATACCATAGACACAACG+GGG | + | chr8.3:18275492-18275511 | None:intergenic | 40.0% | |
| TAAGGCTACACCAAAATGGT+GGG | - | chr8.3:18276161-18276180 | MS.gene065400:intron | 40.0% | |
| TCTCTTCAAGATGGATACCA+TGG | - | chr8.3:18274908-18274927 | MS.gene065400:intron | 40.0% | |
| TCTGAAGAGACACTGTTGTA+AGG | - | chr8.3:18274550-18274569 | MS.gene065400:intron | 40.0% | |
| TGGATACCATGGCCTAATTA+TGG | - | chr8.3:18274919-18274938 | MS.gene065400:intron | 40.0% | |
| TGTGAAACCCTCATTGAGAA+TGG | + | chr8.3:18275531-18275550 | None:intergenic | 40.0% | |
| TTGTTAACACTCTCCCTCTA+AGG | - | chr8.3:18274497-18274516 | MS.gene065400:intron | 40.0% | |
| ! | CTTTACACTGTTGGGTTTTG+TGG | + | chr8.3:18276645-18276664 | None:intergenic | 40.0% |
| ! | GGATTTTGTAACTGGATGGT+TGG | + | chr8.3:18275237-18275256 | None:intergenic | 40.0% |
| ! | TAGAAACAACCTTGGTGCAA+CGG | - | chr8.3:18276065-18276084 | MS.gene065400:intron | 40.0% |
| ! | TCTTGTGATGAACTTTTGGC+AGG | - | chr8.3:18275816-18275835 | MS.gene065400:intron | 40.0% |
| !! | AAGCATTTTAGGTGATGCAC+AGG | - | chr8.3:18276525-18276544 | MS.gene065400:intron | 40.0% |
| !! | ACACGCTCTAAGATAGGTAT+AGG | - | chr8.3:18274746-18274765 | MS.gene065400:intron | 40.0% |
| !! | ACTTTGCTGTTGAAACAGGA+AGG | - | chr8.3:18275683-18275702 | MS.gene065400:intron | 40.0% |
| !! | AGCATTTTAGGTGATGCACA+GGG | - | chr8.3:18276526-18276545 | MS.gene065400:intron | 40.0% |
| !! | ATGGTTTCAGGAGCATTACA+AGG | - | chr8.3:18275414-18275433 | MS.gene065400:intron | 40.0% |
| !! | CCATTGTAAGGGTGTTCAAT+TGG | - | chr8.3:18274627-18274646 | MS.gene065400:intron | 40.0% |
| !! | GCTCACTGTTGCTTCTTTTT+CGG | + | chr8.3:18276585-18276604 | None:intergenic | 40.0% |
| !! | GGTTTTATGTTTGCAAGGCT+TGG | - | chr8.3:18275575-18275594 | MS.gene065400:intron | 40.0% |
| !! | TTCTGGTTGATTTGAGGATG+TGG | - | chr8.3:18275783-18275802 | MS.gene065400:intron | 40.0% |
| !!! | GTTGCTTCTTTTTCGGTAAC+AGG | + | chr8.3:18276578-18276597 | None:intergenic | 40.0% |
| AACCATAGAGCTGCAGCAAA+TGG | + | chr8.3:18276879-18276898 | None:intergenic | 45.0% | |
| AAGTCTCCTCTTATTGTGCC+TGG | + | chr8.3:18275667-18275686 | None:intergenic | 45.0% | |
| AGCGCACTAAAACTCCAACA+GGG | + | chr8.3:18276200-18276219 | None:intergenic | 45.0% | |
| AGGGTAAGGCTACACCAAAA+TGG | - | chr8.3:18276157-18276176 | MS.gene065400:intron | 45.0% | |
| AGTCAATCTGTGGTGAGAAG+GGG | - | chr8.3:18274777-18274796 | MS.gene065400:intron | 45.0% | |
| CAAACATGAATGTCAGGGTC+TGG | - | chr8.3:18274858-18274877 | MS.gene065400:intron | 45.0% | |
| CCATCAGCACGTAAGCTTAT+AGG | - | chr8.3:18275616-18275635 | MS.gene065400:intron | 45.0% | |
| CCTATAAGCTTACGTGCTGA+TGG | + | chr8.3:18275619-18275638 | None:intergenic | 45.0% | |
| CGCAGAATTGTGTGTAAGTG+TGG | - | chr8.3:18276441-18276460 | MS.gene065400:intron | 45.0% | |
| CGGATCAGGATATACCATAG+TGG | - | chr8.3:18274472-18274491 | MS.gene065400:intron | 45.0% | |
| GAAAATGGCGAGCGTGAAAT+AGG | - | chr8.3:18275866-18275885 | MS.gene065400:intron | 45.0% | |
| GAGTCAATCTGTGGTGAGAA+GGG | - | chr8.3:18274776-18274795 | MS.gene065400:intron | 45.0% | |
| GCAACCACTCTTTACACTGT+TGG | + | chr8.3:18276654-18276673 | None:intergenic | 45.0% | |
| GCTGTTGAAACAGGAAGGTA+AGG | - | chr8.3:18275688-18275707 | MS.gene065400:intron | 45.0% | |
| GGAACGACAAAAAGAGAGAC+AGG | - | chr8.3:18274953-18274972 | MS.gene065400:intron | 45.0% | |
| GTAAGGCTACACCAAAATGG+TGG | - | chr8.3:18276160-18276179 | MS.gene065400:intron | 45.0% | |
| TATGTTTGCAAGGCTTGGGA+GGG | - | chr8.3:18275580-18275599 | MS.gene065400:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+AGG | - | chr8.3:18276099-18276118 | MS.gene065400:intron | 45.0% | |
| TTATGTTTGCAAGGCTTGGG+AGG | - | chr8.3:18275579-18275598 | MS.gene065400:intron | 45.0% | |
| ! | ACTGTTGTAAGGGTGTGCAA+TGG | - | chr8.3:18274561-18274580 | MS.gene065400:intron | 45.0% |
| ! | GATCTCTTTTTGCTCTGCTC+TGG | + | chr8.3:18274839-18274858 | None:intergenic | 45.0% |
| ! | TTCCATTTGCTGCAGCTCTA+TGG | - | chr8.3:18276874-18276893 | MS.gene065400:intron | 45.0% |
| !! | AAAATGGTGGGACCCCTTTT+CGG | - | chr8.3:18276173-18276192 | MS.gene065400:intron | 45.0% |
| !! | ATTTCACGCTCGCCATTTTC+AGG | + | chr8.3:18275866-18275885 | None:intergenic | 45.0% |
| !! | GAGCAAACACGCTCTAAGAT+AGG | - | chr8.3:18274740-18274759 | MS.gene065400:intron | 45.0% |
| !! | GGAGACTTTGCTGTTGAAAC+AGG | - | chr8.3:18275679-18275698 | MS.gene065400:intron | 45.0% |
| !! | GTAAGGGTGTTCAATTGGAG+AGG | - | chr8.3:18274632-18274651 | MS.gene065400:intron | 45.0% |
| !! | GTTGCACCAAGGTTGTTTCT+AGG | + | chr8.3:18276066-18276085 | None:intergenic | 45.0% |
| !! | TACACTGTTGGGTTTTGTGG+TGG | + | chr8.3:18276642-18276661 | None:intergenic | 45.0% |
| !! | TGTTGGAGTTTTAGTGCGCT+GGG | - | chr8.3:18276200-18276219 | MS.gene065400:intron | 45.0% |
| !! | TTTCACGCTCGCCATTTTCA+GGG | + | chr8.3:18275865-18275884 | None:intergenic | 45.0% |
| AACTCCAACAGGGTCCGAAA+AGG | + | chr8.3:18276190-18276209 | None:intergenic | 50.0% | |
| AAGGTCACAGGTTCAAGTCC+AGG | - | chr8.3:18276111-18276130 | MS.gene065400:intron | 50.0% | |
| AATCCTCTGCAAGCAGAACC+AGG | - | chr8.3:18275646-18275665 | MS.gene065400:intron | 50.0% | |
| ACTCCAACAGGGTCCGAAAA+GGG | + | chr8.3:18276189-18276208 | None:intergenic | 50.0% | |
| ATCTGTGGTGAGAAGGGGAT+TGG | - | chr8.3:18274782-18274801 | MS.gene065400:intron | 50.0% | |
| CAGCGCACTAAAACTCCAAC+AGG | + | chr8.3:18276201-18276220 | None:intergenic | 50.0% | |
| CAGTGTAAAGAGTGGTTGCG+AGG | - | chr8.3:18276655-18276674 | MS.gene065400:intron | 50.0% | |
| GAGGCGTGATGCAGTTGTAA+GGG | - | chr8.3:18274586-18274605 | MS.gene065400:intron | 50.0% | |
| GCAGAACCAGGCACAATAAG+AGG | - | chr8.3:18275658-18275677 | MS.gene065400:intron | 50.0% | |
| GCAGCTCTATGGTTCAAGGA+AGG | - | chr8.3:18276885-18276904 | MS.gene065400:intron | 50.0% | |
| GGAGTCAATCTGTGGTGAGA+AGG | - | chr8.3:18274775-18274794 | MS.gene065400:intron | 50.0% | |
| GGTATACGGGAGTCAATCTG+TGG | - | chr8.3:18274767-18274786 | MS.gene065400:intron | 50.0% | |
| TCAGGATCACTCTTCGCTGT+TGG | + | chr8.3:18276395-18276414 | None:intergenic | 50.0% | |
| TGCTGCAGCTCTATGGTTCA+AGG | - | chr8.3:18276881-18276900 | MS.gene065400:intron | 50.0% | |
| TGGCGAGCGTGAAATAGGTA+AGG | - | chr8.3:18275871-18275890 | MS.gene065400:intron | 50.0% | |
| TTACAATGGCACCTCAGCTG+TGG | + | chr8.3:18274616-18274635 | None:intergenic | 50.0% | |
| ! | GAAAAGGGGTCCCACCATTT+TGG | + | chr8.3:18276174-18276193 | None:intergenic | 50.0% |
| ! | GTTGTAAGGGTGTGCAATGG+CGG | - | chr8.3:18274564-18274583 | MS.gene065400:intron | 50.0% |
| !! | ACAGCTGAGGTGCCATTGTA+AGG | - | chr8.3:18274615-18274634 | MS.gene065400:intron | 50.0% |
| !! | ACTGTTGGGTTTTGTGGTGG+AGG | + | chr8.3:18276639-18276658 | None:intergenic | 50.0% |
| !! | CAGCTGAGGTGCCATTGTAA+GGG | - | chr8.3:18274616-18274635 | MS.gene065400:intron | 50.0% |
| !! | CTGTTGGAGTTTTAGTGCGC+TGG | - | chr8.3:18276199-18276218 | MS.gene065400:intron | 50.0% |
| !! | GGGTTTTGTGGTGGAGGTAT+GGG | + | chr8.3:18276633-18276652 | None:intergenic | 50.0% |
| !! | TGGGTTTTGTGGTGGAGGTA+TGG | + | chr8.3:18276634-18276653 | None:intergenic | 50.0% |
| AAGACCACGTTGCACGCCAT+CGG | + | chr8.3:18273943-18273962 | None:intergenic | 55.0% | |
| CTCCAACAGGGTCCGAAAAG+GGG | + | chr8.3:18276188-18276207 | None:intergenic | 55.0% | |
| GGACTCCTGTCCTACATCCA+TGG | - | chr8.3:18276922-18276941 | MS.gene065400:CDS | 55.0% | |
| GGCAGTGACAGCCCTGAAAA+TGG | - | chr8.3:18275851-18275870 | MS.gene065400:intron | 55.0% | |
| ! | GGAGGCGTGATGCAGTTGTA+AGG | - | chr8.3:18274585-18274604 | MS.gene065400:intron | 55.0% |
| AAACCCGATGGCGTGCAACG+TGG | - | chr8.3:18273936-18273955 | MS.gene065400:CDS | 60.0% | |
| AGACCACGTTGCACGCCATC+GGG | + | chr8.3:18273942-18273961 | None:intergenic | 60.0% | |
| TTCGGGCCCCGTTGTGTCTA+TGG | - | chr8.3:18275483-18275502 | MS.gene065400:intron | 60.0% | |
| ! | GACCCCTTTTCGGACCCTGT+TGG | - | chr8.3:18276183-18276202 | MS.gene065400:intron | 60.0% |
| ! | GTAAGGGTGTGCAATGGCGG+AGG | - | chr8.3:18274567-18274586 | MS.gene065400:intron | 60.0% |
| ! | TGCAAGGCTTGGGAGGGTGT+TGG | - | chr8.3:18275586-18275605 | MS.gene065400:intron | 60.0% |
| !! | GTGCCTGGTTCTGCTTGCAG+AGG | + | chr8.3:18275652-18275671 | None:intergenic | 60.0% |
| ! | GTAAGGGCACGCCACAGCTG+AGG | - | chr8.3:18274602-18274621 | MS.gene065400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18273906 | 18276948 | 18273906 | ID=MS.gene065400 |
| chr8.3 | mRNA | 18273906 | 18276948 | 18273906 | ID=MS.gene065400.t1;Parent=MS.gene065400 |
| chr8.3 | exon | 18276892 | 18276948 | 18276892 | ID=MS.gene065400.t1.exon1;Parent=MS.gene065400.t1 |
| chr8.3 | CDS | 18276892 | 18276948 | 18276892 | ID=cds.MS.gene065400.t1;Parent=MS.gene065400.t1 |
| chr8.3 | exon | 18276691 | 18276777 | 18276691 | ID=MS.gene065400.t1.exon2;Parent=MS.gene065400.t1 |
| chr8.3 | CDS | 18276691 | 18276777 | 18276691 | ID=cds.MS.gene065400.t1;Parent=MS.gene065400.t1 |
| chr8.3 | exon | 18275350 | 18275430 | 18275350 | ID=MS.gene065400.t1.exon3;Parent=MS.gene065400.t1 |
| chr8.3 | CDS | 18275350 | 18275430 | 18275350 | ID=cds.MS.gene065400.t1;Parent=MS.gene065400.t1 |
| chr8.3 | exon | 18275150 | 18275262 | 18275150 | ID=MS.gene065400.t1.exon4;Parent=MS.gene065400.t1 |
| chr8.3 | CDS | 18275150 | 18275262 | 18275150 | ID=cds.MS.gene065400.t1;Parent=MS.gene065400.t1 |
| chr8.3 | exon | 18273906 | 18273984 | 18273906 | ID=MS.gene065400.t1.exon5;Parent=MS.gene065400.t1 |
| chr8.3 | CDS | 18273906 | 18273984 | 18273906 | ID=cds.MS.gene065400.t1;Parent=MS.gene065400.t1 |
| Gene Sequence |
| Protein sequence |
