AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065682


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065682.t1 MTR_1g107480 99.497 596 3 0 3 598 2 597 0.0 1189
MS.gene065682.t1 MTR_4g005880 78.532 545 117 0 54 598 86 630 0.0 897
MS.gene065682.t1 MTR_3g005970 31.621 253 155 5 119 355 117 367 4.00e-29 119
MS.gene065682.t1 MTR_4g013100 28.235 255 174 4 119 372 68 314 1.75e-28 116
MS.gene065682.t1 MTR_4g013090 28.794 257 168 5 120 372 68 313 4.09e-28 115
MS.gene065682.t1 MTR_1g112510 33.910 289 161 8 97 360 63 346 1.32e-27 115
MS.gene065682.t1 MTR_4g012960 26.772 254 176 4 119 372 67 310 6.89e-26 108
MS.gene065682.t1 MTR_6g007170 30.924 249 162 4 120 361 122 367 1.71e-23 103
MS.gene065682.t1 MTR_4g013135 29.297 256 170 6 119 372 67 313 4.75e-21 94.7
MS.gene065682.t1 MTR_8g033390 28.788 264 171 5 120 379 76 326 8.33e-21 94.4
MS.gene065682.t1 MTR_2g101840 28.462 260 168 7 119 372 67 314 1.33e-19 90.5
MS.gene065682.t1 MTR_6g007175 28.629 248 150 5 120 361 91 317 3.37e-18 86.7
MS.gene065682.t1 MTR_8g033410 25.197 254 177 5 120 367 79 325 4.44e-17 83.2
MS.gene065682.t1 MTR_8g033400 26.482 253 173 6 99 346 67 311 4.48e-17 83.2
MS.gene065682.t1 MTR_7g075830 29.707 239 144 8 120 341 57 288 7.21e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065682.t1 AT4G34200 83.219 584 94 2 19 598 20 603 0.0 981
MS.gene065682.t1 AT3G19480 82.155 566 99 1 35 598 23 588 0.0 942
MS.gene065682.t1 AT1G17745 78.269 543 118 0 56 598 82 624 0.0 885
MS.gene065682.t1 AT1G17745 74.211 570 120 2 56 598 82 651 0.0 864
MS.gene065682.t1 AT1G72190 29.181 281 183 5 76 347 77 350 1.18e-27 115
MS.gene065682.t1 AT5G14780 31.667 240 160 3 126 361 112 351 5.29e-27 113
MS.gene065682.t1 AT5G14780 31.667 240 160 3 126 361 100 339 7.95e-27 112
MS.gene065682.t1 AT1G79870 28.627 255 171 6 120 372 68 313 1.04e-26 111
MS.gene065682.t1 AT5G14780 31.667 240 160 3 126 361 126 365 1.22e-26 112
MS.gene065682.t1 AT1G68010 32.753 287 167 7 97 360 63 346 4.40e-25 108
MS.gene065682.t1 AT1G68010 32.986 288 166 8 97 360 63 347 1.32e-23 103
MS.gene065682.t1 AT1G12550 28.631 241 165 4 120 358 75 310 1.46e-23 102
MS.gene065682.t1 AT1G68010 32.482 274 159 7 97 347 63 333 1.53e-23 103
MS.gene065682.t1 AT2G45630 28.125 256 173 6 120 372 91 338 3.83e-22 98.6
MS.gene065682.t1 AT1G79870 27.559 254 156 6 120 372 68 294 2.58e-21 95.1

Find 185 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCATTGAGCATCTTAT+TGG 0.186509 1.4:-82906490 None:intergenic
GGCGGAGGAGAGAGGGAGTT+TGG 0.212385 1.4:-82905216 None:intergenic
CTTGTTAGAGCATTGGATTC+TGG 0.237598 1.4:+82906585 MS.gene065682:CDS
GTGAAGGGAGACGGAGGGTT+TGG 0.252825 1.4:-82905172 None:intergenic
ACACTTGCTGTAATGGGATT+TGG 0.255805 1.4:+82906291 MS.gene065682:CDS
GCTAGTGCCATATCAGATTC+AGG 0.283199 1.4:+82907804 MS.gene065682:CDS
CATAACCAACTTGCTGTCTT+TGG 0.290705 1.4:-82906739 None:intergenic
GTTCACGAAAACACTGGATA+TGG 0.294301 1.4:-82907649 None:intergenic
TGTTGATCTTGCTGAGAAAC+TGG 0.306465 1.4:+82907491 MS.gene065682:CDS
TGAAGGGAGACGGAGGGTTT+GGG 0.332772 1.4:-82905171 None:intergenic
AAGGTAGCATTATACTTTGC+AGG 0.338794 1.4:+82907910 MS.gene065682:CDS
CGTGAAGTGTTTGAATCTTC+CGG 0.339399 1.4:+82905473 MS.gene065682:CDS
CACTTGCTGTAATGGGATTT+GGG 0.344965 1.4:+82906292 MS.gene065682:CDS
GGAGTTTGGAGGAGAGAGAA+AGG 0.350829 1.4:-82905202 None:intergenic
GCTGATCGTGCTCATGCTAT+TGG 0.358730 1.4:+82906390 MS.gene065682:CDS
GAGGAGAGAGTTATTCTTGA+TGG 0.369656 1.4:+82907720 MS.gene065682:CDS
TCTAACTCCTTTCTTCATCT+TGG 0.371423 1.4:-82906520 None:intergenic
GGGAAGACACTTGCTGTAAT+GGG 0.381131 1.4:+82906285 MS.gene065682:CDS
GACCTCCCCTGAATCTGATA+TGG 0.384239 1.4:-82907811 None:intergenic
ACATGGTCAATACAGGGAAA+TGG 0.390332 1.4:+82906229 MS.gene065682:intron
GAAGACGACGAGGGAACGGC+GGG 0.395159 1.4:-82905267 None:intergenic
AGCATCACAGAGAGAGATCT+TGG 0.396721 1.4:-82905420 None:intergenic
GAGATTCCACGTTAGCAATC+TGG 0.405437 1.4:-82907776 None:intergenic
AGACGAGTGTCAAGATCATC+AGG 0.412057 1.4:-82907591 None:intergenic
CCCACCTTTCCAATCATACC+TGG 0.415387 1.4:-82907945 None:intergenic
ATCTTGGTGCAAAGCTCCTC+AGG 0.418039 1.4:-82905404 None:intergenic
CCACGTTAGCAATCTGGACT+TGG 0.423183 1.4:-82907770 None:intergenic
ACGGAGGGAGACGGAGAAGG+CGG 0.423781 1.4:-82905234 None:intergenic
TGGGAAGACACTTGCTGTAA+TGG 0.425768 1.4:+82906284 MS.gene065682:CDS
GGAAAGGTGGGAAGCATCTT+GGG 0.427465 1.4:+82907957 MS.gene065682:CDS
TATGTTGGAGTTTCCCTAGT+TGG 0.429161 1.4:+82906264 MS.gene065682:CDS
GTAGATCAACCAGGTATGAT+TGG 0.432608 1.4:+82907936 MS.gene065682:CDS
CAGCAAGTGTCTTCCCAACT+AGG 0.432947 1.4:-82906278 None:intergenic
GGGAAGATGGTGAAGGGAGA+CGG 0.433199 1.4:-82905181 None:intergenic
GAGGGAGACGGAGAAGGCGG+AGG 0.434071 1.4:-82905231 None:intergenic
AAATAGCAGAAGCTGTCGTT+GGG 0.435352 1.4:+82906925 MS.gene065682:CDS
CACGGGATCGCGCTCTTAGC+TGG 0.436535 1.4:+82905620 MS.gene065682:CDS
CTCAAGGTTGTTGGTAGAGC+TGG 0.437574 1.4:+82905503 MS.gene065682:CDS
TGGAAAGGTGGGAAGCATCT+TGG 0.437963 1.4:+82907956 MS.gene065682:CDS
CGCTACCGAACATGGTTGCT+TGG 0.440707 1.4:+82905556 MS.gene065682:CDS
CATGGTCAATACAGGGAAAT+GGG 0.442636 1.4:+82906230 MS.gene065682:intron
GAGGAGAGAGAAAGGGAAGA+TGG 0.443990 1.4:-82905194 None:intergenic
AAACACTTCACGTGAGACTT+TGG 0.446385 1.4:-82905462 None:intergenic
GGAAGTAGCGTTAGCGGCGG+CGG 0.448739 1.4:-82905150 None:intergenic
GGGTAGGTTGGCTGTCCAAC+TGG 0.450313 1.4:+82907512 MS.gene065682:CDS
TTCAGGGGAGGTCACGGTGG+AGG 0.452073 1.4:+82907821 MS.gene065682:CDS
ATGTTGGAGTTTCCCTAGTT+GGG 0.453564 1.4:+82906265 MS.gene065682:CDS
AACCAACTTGCTGTCTTTGG+TGG 0.455394 1.4:-82906736 None:intergenic
GCTGAAAAGCTCGGCGAAGC+TGG 0.458612 1.4:+82905329 MS.gene065682:CDS
ATGAATTCAAGTGGATTCTC+AGG 0.462448 1.4:-82907747 None:intergenic
AAAGAATCTTTGCAAAGGAT+TGG 0.466060 1.4:+82908074 MS.gene065682:CDS
AAGCAGGCTGTGATGGCAAT+TGG 0.470416 1.4:+82908032 MS.gene065682:CDS
GCACGATCAGCAGGAGCATA+AGG 0.471790 1.4:-82906378 None:intergenic
AACAACCAAGCAACCATGTT+CGG 0.472937 1.4:-82905561 None:intergenic
GTAATGGGATTTGGGAAGGT+TGG 0.474064 1.4:+82906300 MS.gene065682:CDS
GGATGCACTTGTTAGAGCAT+TGG 0.476077 1.4:+82906578 MS.gene065682:CDS
CTGTCGTTGGGGCTTTGAAA+GGG 0.476987 1.4:+82906937 MS.gene065682:CDS
GGATTCTGGAATTGTAGCTC+AGG 0.477094 1.4:+82906599 MS.gene065682:CDS
GGAGGAGAGAGGGAGTTTGG+AGG 0.479184 1.4:-82905213 None:intergenic
ACATTTAATCTTACAACTTG+AGG 0.482522 1.4:-82908127 None:intergenic
TTGAGCATCTTATTGGTAGC+AGG 0.483290 1.4:-82906483 None:intergenic
AAGATCCAACCTTTGTAAGA+TGG 0.485383 1.4:-82907866 None:intergenic
GTAACTTACCTGAGCTTCCA+TGG 0.486993 1.4:-82906802 None:intergenic
TTCTCAGCAAGATCAACAAA+TGG 0.487878 1.4:-82907486 None:intergenic
TGCTAAGGGGCTTGGTATGA+AGG 0.488921 1.4:+82906341 MS.gene065682:CDS
AGATCCAACCTTTGTAAGAT+GGG 0.489776 1.4:-82907865 None:intergenic
TGGGAGAGAAGTAAGTATGT+TGG 0.490032 1.4:+82906249 MS.gene065682:CDS
GCTAGGCGTGCTAAGGGGCT+TGG 0.491466 1.4:+82906333 MS.gene065682:CDS
GGGTTTAGCGTCGAGGGAAG+AGG 0.493537 1.4:-82905294 None:intergenic
AAAACAAATTCTTCAACAGC+AGG 0.493626 1.4:-82908104 None:intergenic
TTATTGGTAGCAGGCGTAAG+AGG 0.493736 1.4:-82906474 None:intergenic
CGAAGACGACGAGGGAACGG+CGG 0.494219 1.4:-82905268 None:intergenic
CGGAGAAGGCGGAGGAGAGA+GGG 0.496667 1.4:-82905223 None:intergenic
GCCATCACAGCCTGCTTGCG+TGG 0.497834 1.4:-82908026 None:intergenic
ATTTGGGAAGGTTGGAACTG+AGG 0.497988 1.4:+82906308 MS.gene065682:CDS
AGACGAAGACGACGAGGGAA+CGG 0.498132 1.4:-82905271 None:intergenic
TGCCAGTACCATGGAAGCTC+AGG 0.500424 1.4:+82906794 MS.gene065682:CDS
GGTTTGGGAAGTAGCGTTAG+CGG 0.502137 1.4:-82905156 None:intergenic
GAAATAGCAGAAGCTGTCGT+TGG 0.503793 1.4:+82906924 MS.gene065682:CDS
TCCACGCAAGCAGGCTGTGA+TGG 0.504167 1.4:+82908025 MS.gene065682:CDS
AAGATGGTGAAGGGAGACGG+AGG 0.504509 1.4:-82905178 None:intergenic
CATGGCTAGAAATGTTGCTC+AGG 0.505750 1.4:+82905643 MS.gene065682:CDS
TTCACGAAAACACTGGATAT+GGG 0.506220 1.4:-82907648 None:intergenic
GTTACTGCAACACCTCATCT+TGG 0.506235 1.4:+82906771 MS.gene065682:CDS
TGAGGTTGCTAGGCGTGCTA+AGG 0.507332 1.4:+82906326 MS.gene065682:CDS
GGTGGAAGACTCAAGGTTGT+TGG 0.507539 1.4:+82905494 MS.gene065682:CDS
TACCTGAGCTTCCATGGTAC+TGG 0.508674 1.4:-82906796 None:intergenic
TTGGCTGTCCAACTGGTAGC+AGG 0.509470 1.4:+82907519 MS.gene065682:CDS
GAGTTTGGAGGAGAGAGAAA+GGG 0.509782 1.4:-82905201 None:intergenic
TGGTATTGATAACGTGGATC+TGG 0.510283 1.4:+82905529 MS.gene065682:CDS
AGAGAAAGGGAAGATGGTGA+AGG 0.510419 1.4:-82905188 None:intergenic
CTGGCCGCCGCTACCGAACA+TGG 0.510644 1.4:+82905548 MS.gene065682:CDS
ACGGAGAAGGCGGAGGAGAG+AGG 0.514088 1.4:-82905224 None:intergenic
GCTGTCGTTGGGGCTTTGAA+AGG 0.514440 1.4:+82906936 MS.gene065682:CDS
GGGACGGAGGGAGACGGAGA+AGG 0.516055 1.4:-82905237 None:intergenic
AACTTGCTGTCTTTGGTGGG+TGG 0.516646 1.4:-82906732 None:intergenic
TGCTGAGAAACTGGGTAGGT+TGG 0.518778 1.4:+82907500 MS.gene065682:CDS
TCAGGGGAGGTCACGGTGGA+GGG 0.520156 1.4:+82907822 MS.gene065682:CDS
CTAGTGCCATATCAGATTCA+GGG 0.520803 1.4:+82907805 MS.gene065682:CDS
AGCGGCGGCAACAGTGTTAG+CGG 0.522757 1.4:-82905594 None:intergenic
GAGGTTGCTAGGCGTGCTAA+GGG 0.523235 1.4:+82906327 MS.gene065682:CDS
GAGAAAGGGAAGATGGTGAA+GGG 0.525178 1.4:-82905187 None:intergenic
AGACGACGAGGGAACGGCGG+GGG 0.527589 1.4:-82905265 None:intergenic
CTCCTCAGGAGTGAGATTGT+AGG 0.528475 1.4:-82905390 None:intergenic
ACCAGGTATGATTGGAAAGG+TGG 0.534240 1.4:+82907944 MS.gene065682:CDS
AAGGATTGCTCCACGCAAGC+AGG 0.534675 1.4:+82908016 MS.gene065682:CDS
CGCGATCCCGTGTTCAGCGG+CGG 0.534842 1.4:-82905609 None:intergenic
ATAGCATGAGCACGATCAGC+AGG 0.535627 1.4:-82906387 None:intergenic
CTGTTGCCGCCGCTGAACAC+GGG 0.536140 1.4:+82905603 MS.gene065682:CDS
GTTGTGGGGACGGAGGGAGA+CGG 0.538697 1.4:-82905243 None:intergenic
CGCTTCCTCCTGCTACCAGT+TGG 0.547036 1.4:-82907527 None:intergenic
AGGTTGGAACTGAGGTTGCT+AGG 0.547137 1.4:+82906316 MS.gene065682:CDS
ACCAACTTGCTGTCTTTGGT+GGG 0.548749 1.4:-82906735 None:intergenic
CAAGCAACCATGTTCGGTAG+CGG 0.550793 1.4:-82905555 None:intergenic
GCTGATGCTTCTATCAAAGC+TGG 0.551395 1.4:+82905665 MS.gene065682:CDS
ACTGTTGCCGCCGCTGAACA+CGG 0.551728 1.4:+82905602 MS.gene065682:CDS
CCAAGTCCAGATTGCTAACG+TGG 0.553204 1.4:+82907770 MS.gene065682:CDS
TACTGCAGTCAATGCACCAA+TGG 0.553293 1.4:+82906971 MS.gene065682:CDS
ATCAGATTCAGGGGAGGTCA+CGG 0.555338 1.4:+82907815 MS.gene065682:CDS
CACGGTGGAGGGTCGTGTGA+AGG 0.556967 1.4:+82907833 MS.gene065682:CDS
TGCTGTAATGGGATTTGGGA+AGG 0.561363 1.4:+82906296 MS.gene065682:CDS
CTTCGTGCTATGATAACAAA+GGG 0.568014 1.4:+82907615 MS.gene065682:CDS
GACGGTGGGTTTAGCGTCGA+GGG 0.568041 1.4:-82905300 None:intergenic
CTTTGCAAAGATTCTTTGCG+TGG 0.570600 1.4:-82908068 None:intergenic
AAGTGACTTACGCTTCCGCT+AGG 0.571734 1.4:+82907565 MS.gene065682:CDS
GAAGTTGATGTGAGTTTGGA+AGG 0.575576 1.4:+82907891 MS.gene065682:CDS
ATCTTCCGGTGGAAGACTCA+AGG 0.576123 1.4:+82905487 MS.gene065682:CDS
AATGTCAGCTTCATGAGTGT+TGG 0.576599 1.4:+82907993 MS.gene065682:CDS
TGTCGTTGGGGCTTTGAAAG+GGG 0.577535 1.4:+82906938 MS.gene065682:CDS
AGCAAGTGTCTTCCCAACTA+GGG 0.578467 1.4:-82906277 None:intergenic
GCGGCAACAGTGTTAGCGGT+GGG 0.581834 1.4:-82905590 None:intergenic
CAACTGGTAGCAGGAGGAAG+CGG 0.583181 1.4:+82907528 MS.gene065682:CDS
CCAGGTATGATTGGAAAGGT+GGG 0.583244 1.4:+82907945 MS.gene065682:CDS
GTGGAGGGTCGTGTGAAGGA+TGG 0.585025 1.4:+82907837 MS.gene065682:CDS
AGATGGTGAAGGGAGACGGA+GGG 0.591266 1.4:-82905177 None:intergenic
AGCACCTCTGAGGAAACCAT+TGG 0.591640 1.4:-82906987 None:intergenic
GACTTCACTGCTAAACAAAG+AGG 0.591938 1.4:+82907684 MS.gene065682:CDS
TGGACTTGGATGAATTCAAG+TGG 0.592769 1.4:-82907756 None:intergenic
TCTTCGTGCTATGATAACAA+AGG 0.593071 1.4:+82907614 MS.gene065682:CDS
GATCCAACCTTTGTAAGATG+GGG 0.598278 1.4:-82907864 None:intergenic
TCAGCTTCATGAGTGTTGGA+AGG 0.600265 1.4:+82907997 MS.gene065682:CDS
AAGAGGAGACGAAGACGACG+AGG 0.601153 1.4:-82905277 None:intergenic
AGTGACTTACGCTTCCGCTA+GGG 0.601349 1.4:+82907566 MS.gene065682:CDS
GAGCGCGATCCCGTGTTCAG+CGG 0.601676 1.4:-82905612 None:intergenic
GATCGCGCTCTTAGCTGGCA+TGG 0.602254 1.4:+82905625 MS.gene065682:CDS
GTTGTTGGTAGAGCTGGTGT+TGG 0.603479 1.4:+82905509 MS.gene065682:CDS
CACGCAAAGAATCTTTGCAA+AGG 0.603720 1.4:+82908069 MS.gene065682:CDS
ATTGTTAATGTTGCTCGTGG+TGG 0.608712 1.4:+82906543 MS.gene065682:CDS
GGCGGCAACAGTGTTAGCGG+TGG 0.609033 1.4:-82905591 None:intergenic
TCATCTTGGTGCCAGTACCA+TGG 0.610967 1.4:+82906785 MS.gene065682:CDS
GCAACCATGTTCGGTAGCGG+CGG 0.611449 1.4:-82905552 None:intergenic
TGCACCAATGGTTTCCTCAG+AGG 0.611627 1.4:+82906983 MS.gene065682:CDS
GGACGGTGGGTTTAGCGTCG+AGG 0.613960 1.4:-82905301 None:intergenic
ATGGTACTGGCACCAAGATG+AGG 0.614100 1.4:-82906783 None:intergenic
AACAACCTTGAGTCTTCCAC+CGG 0.614270 1.4:-82905492 None:intergenic
GTCCTCGTCGCTGAAAAGCT+CGG 0.619802 1.4:+82905320 MS.gene065682:CDS
TTGGGAAGTAGCGTTAGCGG+CGG 0.621158 1.4:-82905153 None:intergenic
AACTAAGTTCACGAAAACAC+TGG 0.623332 1.4:-82907655 None:intergenic
AGGTTGCTAGGCGTGCTAAG+GGG 0.630349 1.4:+82906328 MS.gene065682:CDS
TCAACCAGGTATGATTGGAA+AGG 0.630443 1.4:+82907941 MS.gene065682:CDS
GTTGATCTTGCTGAGAAACT+GGG 0.632655 1.4:+82907492 MS.gene065682:CDS
AGAATTGTTAATGTTGCTCG+TGG 0.642633 1.4:+82906540 MS.gene065682:CDS
AGAGGAGACGAAGACGACGA+GGG 0.647210 1.4:-82905276 None:intergenic
ACTTCACTGCTAAACAAAGA+GGG 0.657467 1.4:+82907685 MS.gene065682:CDS
ACCCACCAAAGACAGCAAGT+TGG 0.658654 1.4:+82906734 MS.gene065682:CDS
GAAGTGTTTGAATCTTCCGG+TGG 0.658805 1.4:+82905476 MS.gene065682:CDS
ATCCAACCTTTGTAAGATGG+GGG 0.663549 1.4:-82907863 None:intergenic
TAGTGCCATATCAGATTCAG+GGG 0.665071 1.4:+82907806 MS.gene065682:CDS
GACGAGTGTCAAGATCATCA+GGG 0.667404 1.4:-82907590 None:intergenic
AAGATCATCAGGGGCCCTAG+CGG 0.668439 1.4:-82907580 None:intergenic
AAGAGGGCTAAGAATTACTG+AGG 0.668513 1.4:+82907701 MS.gene065682:CDS
TGCAGGCAAGTAGATCAACC+AGG 0.669453 1.4:+82907927 MS.gene065682:CDS
CTCCTACAATCTCACTCCTG+AGG 0.670177 1.4:+82905388 MS.gene065682:CDS
CAAAGAGATGAAATCAGCGG+TGG 0.673605 1.4:-82906445 None:intergenic
AGATTCAGGGGAGGTCACGG+TGG 0.674117 1.4:+82907818 MS.gene065682:CDS
GCTGTCCAACTGGTAGCAGG+AGG 0.676150 1.4:+82907522 MS.gene065682:CDS
AAGACGACGAGGGAACGGCG+GGG 0.677271 1.4:-82905266 None:intergenic
GATGCTCTCATCGTTCGCAG+TGG 0.681979 1.4:+82905437 MS.gene065682:CDS
ACGAGTGTCAAGATCATCAG+GGG 0.682389 1.4:-82907589 None:intergenic
TGCCATATCAGATTCAGGGG+AGG 0.684990 1.4:+82907809 MS.gene065682:CDS
AATAGCAGAAGCTGTCGTTG+GGG 0.700433 1.4:+82906926 MS.gene065682:CDS
GTGCAAAGAGATGAAATCAG+CGG 0.712158 1.4:-82906448 None:intergenic
ATCTTGCTGAGAAACTGGGT+AGG 0.734226 1.4:+82907496 MS.gene065682:CDS
TGGTGTTGGTATTGATAACG+TGG 0.740226 1.4:+82905523 MS.gene065682:CDS
TCGTGGTGGAGTCATTGACG+AGG 0.747608 1.4:+82906557 MS.gene065682:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATATAACAAACA+AGG - chr1.4:82905728-82905747 None:intergenic 10.0%
!!! TATTTTTATCATGAAATAAA+AGG - chr1.4:82907036-82907055 None:intergenic 10.0%
!! TAATTTAAGTAAACTAAAAG+TGG - chr1.4:82906639-82906658 None:intergenic 15.0%
!!! TTTACTATTTAGAATGATTT+TGG - chr1.4:82907120-82907139 None:intergenic 15.0%
!!! TTTTTTAGTGTTAGTTATTT+GGG + chr1.4:82905770-82905789 MS.gene065682:intron 15.0%
!! TGAGATCTAATGATATATAT+GGG + chr1.4:82905955-82905974 MS.gene065682:intron 20.0%
!! TTGAGATCTAATGATATATA+TGG + chr1.4:82905954-82905973 MS.gene065682:intron 20.0%
!! TTTGAGAAAATGACATTATT+CGG - chr1.4:82906132-82906151 None:intergenic 20.0%
!!! GTTTTTTAGTGTTAGTTATT+TGG + chr1.4:82905769-82905788 MS.gene065682:intron 20.0%
!!! TCATATATTGAAAACGATTT+TGG + chr1.4:82907166-82907185 MS.gene065682:intron 20.0%
!!! TCGTTTTCAATATATGAATA+TGG - chr1.4:82907163-82907182 None:intergenic 20.0%
! AAAAACACAACAAAATCATC+AGG - chr1.4:82905755-82905774 None:intergenic 25.0%
! AGATCTAATGATATATATGG+GGG + chr1.4:82905957-82905976 MS.gene065682:intron 25.0%
! ATACAAAATGATTCATGGAT+TGG + chr1.4:82907374-82907393 MS.gene065682:intron 25.0%
! ATATTGCTTGGATATAGATA+AGG - chr1.4:82907092-82907111 None:intergenic 25.0%
! ATTAAATACTACTCAAGTGA+AGG + chr1.4:82907247-82907266 MS.gene065682:intron 25.0%
! GAGATCTAATGATATATATG+GGG + chr1.4:82905956-82905975 MS.gene065682:intron 25.0%
! GATTTGAGAAATCTAATACA+TGG + chr1.4:82907279-82907298 MS.gene065682:intron 25.0%
! TCCTAATACAAAATGATTCA+TGG + chr1.4:82907369-82907388 MS.gene065682:intron 25.0%
! TTATCTATATCCAAGCAATA+TGG + chr1.4:82907091-82907110 MS.gene065682:intron 25.0%
!! GCATAAGTTATTAGTTGATA+TGG + chr1.4:82906186-82906205 MS.gene065682:intron 25.0%
!! TAAAATTTTCTGTGTAAAGG+AGG + chr1.4:82905875-82905894 MS.gene065682:intron 25.0%
!! TCCATGAATCATTTTGTATT+AGG - chr1.4:82907373-82907392 None:intergenic 25.0%
!! TGGTAAAATTTTCTGTGTAA+AGG + chr1.4:82905872-82905891 MS.gene065682:intron 25.0%
!!! AAAACGATTTTGGAACAAAA+TGG + chr1.4:82907176-82907195 MS.gene065682:intron 25.0%
!!! AGTATTTAATTTGAACCAGT+TGG - chr1.4:82907237-82907256 None:intergenic 25.0%
!!! ATTGAATTAGTGTTGATACA+TGG + chr1.4:82906212-82906231 MS.gene065682:intron 25.0%
!!! CTTAATGAGTTTTTTTTGCT+CGG + chr1.4:82907304-82907323 MS.gene065682:intron 25.0%
AAAACAAATTCTTCAACAGC+AGG - chr1.4:82908107-82908126 None:intergenic 30.0%
AAAGAATCTTTGCAAAGGAT+TGG + chr1.4:82908074-82908093 MS.gene065682:CDS 30.0%
AAGCTATAACTCATAGTCAT+AGG - chr1.4:82906839-82906858 None:intergenic 30.0%
TTGTTAACTACTAGTTGACT+AGG + chr1.4:82905841-82905860 MS.gene065682:intron 30.0%
TTTCAAAGGTTATTAGACAC+TGG - chr1.4:82906878-82906897 None:intergenic 30.0%
! ATAGTTTGTGTCTTTGTTTC+AGG + chr1.4:82906683-82906702 MS.gene065682:intron 30.0%
!! ATTGGAGTTGGTGATAAATT+TGG + chr1.4:82907392-82907411 MS.gene065682:intron 30.0%
!! ATTTTGGAAACCATATTGCT+TGG - chr1.4:82907104-82907123 None:intergenic 30.0%
!!! TTTTGAAGTTGATGTGAGTT+TGG + chr1.4:82907887-82907906 MS.gene065682:CDS 30.0%
AACACCCATTACAGATTACA+CGG - chr1.4:82906008-82906027 None:intergenic 35.0%
AACTAAGTTCACGAAAACAC+TGG - chr1.4:82907658-82907677 None:intergenic 35.0%
AAGATCCAACCTTTGTAAGA+TGG - chr1.4:82907869-82907888 None:intergenic 35.0%
AAGGTAGCATTATACTTTGC+AGG + chr1.4:82907910-82907929 MS.gene065682:CDS 35.0%
ACTTCACTGCTAAACAAAGA+GGG + chr1.4:82907685-82907704 MS.gene065682:CDS 35.0%
AGAATTCACCACACACAAAT+TGG - chr1.4:82905921-82905940 None:intergenic 35.0%
AGAATTGTTAATGTTGCTCG+TGG + chr1.4:82906540-82906559 MS.gene065682:CDS 35.0%
AGATCCAACCTTTGTAAGAT+GGG - chr1.4:82907868-82907887 None:intergenic 35.0%
AGTAACAATATCAAGAGGCA+AGG - chr1.4:82907060-82907079 None:intergenic 35.0%
ATAGTCATAGGCAATTGCTT+AGG - chr1.4:82906827-82906846 None:intergenic 35.0%
CACACACAAATTGGTATATG+AGG - chr1.4:82905912-82905931 None:intergenic 35.0%
CTCATATACCAATTTGTGTG+TGG + chr1.4:82905910-82905929 MS.gene065682:intron 35.0%
CTCATCATTGAGCATCTTAT+TGG - chr1.4:82906493-82906512 None:intergenic 35.0%
CTTCGTGCTATGATAACAAA+GGG + chr1.4:82907615-82907634 MS.gene065682:CDS 35.0%
GAAGCAGTAACAATATCAAG+AGG - chr1.4:82907065-82907084 None:intergenic 35.0%
GATAAAGCCAGCTTCAAAAT+TGG - chr1.4:82907340-82907359 None:intergenic 35.0%
GTTGATACATGGTCAATACA+GGG + chr1.4:82906223-82906242 MS.gene065682:intron 35.0%
TCTAACTCCTTTCTTCATCT+TGG - chr1.4:82906523-82906542 None:intergenic 35.0%
TCTTCCGTGTAATCTGTAAT+GGG + chr1.4:82906001-82906020 MS.gene065682:intron 35.0%
TCTTCGTGCTATGATAACAA+AGG + chr1.4:82907614-82907633 MS.gene065682:CDS 35.0%
TGTTGATACATGGTCAATAC+AGG + chr1.4:82906222-82906241 MS.gene065682:intron 35.0%
TTCACGAAAACACTGGATAT+GGG - chr1.4:82907651-82907670 None:intergenic 35.0%
TTCTCAGCAAGATCAACAAA+TGG - chr1.4:82907489-82907508 None:intergenic 35.0%
TTCTTCCGTGTAATCTGTAA+TGG + chr1.4:82906000-82906019 MS.gene065682:intron 35.0%
TTTGAAAATGATGACCAGGA+AGG + chr1.4:82906891-82906910 MS.gene065682:intron 35.0%
! AACCTTTGAAAATGATGACC+AGG + chr1.4:82906887-82906906 MS.gene065682:intron 35.0%
! ACATTGTCACTTCTGATCAA+AGG + chr1.4:82906058-82906077 MS.gene065682:intron 35.0%
! ACTTTTGCCAAGATGAAGAA+AGG + chr1.4:82906513-82906532 MS.gene065682:CDS 35.0%
! ATGAATTCAAGTGGATTCTC+AGG - chr1.4:82907750-82907769 None:intergenic 35.0%
! TTCCTGGTCATCATTTTCAA+AGG - chr1.4:82906892-82906911 None:intergenic 35.0%
!! AATGATTCATGGATTGGAGT+TGG + chr1.4:82907380-82907399 MS.gene065682:intron 35.0%
!! TGTAATGGGTGTTAATGTTG+TGG + chr1.4:82906015-82906034 MS.gene065682:intron 35.0%
AAACACTTCACGTGAGACTT+TGG - chr1.4:82905465-82905484 None:intergenic 40.0%
AAAGCCAGCTTCAAAATTGG+AGG - chr1.4:82907337-82907356 None:intergenic 40.0%
AAATAGCAGAAGCTGTCGTT+GGG + chr1.4:82906925-82906944 MS.gene065682:CDS 40.0%
AACAACCAAGCAACCATGTT+CGG - chr1.4:82905564-82905583 None:intergenic 40.0%
AAGAGGGCTAAGAATTACTG+AGG + chr1.4:82907701-82907720 MS.gene065682:CDS 40.0%
AAGCCAGCTTCAAAATTGGA+GGG - chr1.4:82907336-82907355 None:intergenic 40.0%
AATGTCAGCTTCATGAGTGT+TGG + chr1.4:82907993-82908012 MS.gene065682:CDS 40.0%
ACATGGTCAATACAGGGAAA+TGG + chr1.4:82906229-82906248 MS.gene065682:intron 40.0%
ATCCAACCTTTGTAAGATGG+GGG - chr1.4:82907866-82907885 None:intergenic 40.0%
ATGTTGGAGTTTCCCTAGTT+GGG + chr1.4:82906265-82906284 MS.gene065682:CDS 40.0%
ATTAGACACTGGTGGCAAAA+GGG - chr1.4:82906867-82906886 None:intergenic 40.0%
ATTGTTAATGTTGCTCGTGG+TGG + chr1.4:82906543-82906562 MS.gene065682:CDS 40.0%
CAAAGGTTATTAGACACTGG+TGG - chr1.4:82906875-82906894 None:intergenic 40.0%
CACGCAAAGAATCTTTGCAA+AGG + chr1.4:82908069-82908088 MS.gene065682:CDS 40.0%
CATGGTCAATACAGGGAAAT+GGG + chr1.4:82906230-82906249 MS.gene065682:intron 40.0%
CTAGTGCCATATCAGATTCA+GGG + chr1.4:82907805-82907824 MS.gene065682:CDS 40.0%
CTTTGCAAAGATTCTTTGCG+TGG - chr1.4:82908071-82908090 None:intergenic 40.0%
GACTTCACTGCTAAACAAAG+AGG + chr1.4:82907684-82907703 MS.gene065682:CDS 40.0%
GAGGAGAGAGTTATTCTTGA+TGG + chr1.4:82907720-82907739 MS.gene065682:CDS 40.0%
GATCCAACCTTTGTAAGATG+GGG - chr1.4:82907867-82907886 None:intergenic 40.0%
GTAGATCAACCAGGTATGAT+TGG + chr1.4:82907936-82907955 MS.gene065682:CDS 40.0%
GTGCAAAGAGATGAAATCAG+CGG - chr1.4:82906451-82906470 None:intergenic 40.0%
GTTCACGAAAACACTGGATA+TGG - chr1.4:82907652-82907671 None:intergenic 40.0%
GTTGATCTTGCTGAGAAACT+GGG + chr1.4:82907492-82907511 MS.gene065682:CDS 40.0%
TAGTGCCATATCAGATTCAG+GGG + chr1.4:82907806-82907825 MS.gene065682:CDS 40.0%
TAGTTGACTAGGTGACGTAA+TGG + chr1.4:82905852-82905871 MS.gene065682:intron 40.0%
TATGTTGGAGTTTCCCTAGT+TGG + chr1.4:82906264-82906283 MS.gene065682:CDS 40.0%
TATTAGACACTGGTGGCAAA+AGG - chr1.4:82906868-82906887 None:intergenic 40.0%
TCAACCAGGTATGATTGGAA+AGG + chr1.4:82907941-82907960 MS.gene065682:CDS 40.0%
TGGACTTGGATGAATTCAAG+TGG - chr1.4:82907759-82907778 None:intergenic 40.0%
TGGGAGAGAAGTAAGTATGT+TGG + chr1.4:82906249-82906268 MS.gene065682:CDS 40.0%
TGTTGATCTTGCTGAGAAAC+TGG + chr1.4:82907491-82907510 MS.gene065682:CDS 40.0%
TTAACACCTGCAAGTCACAA+AGG - chr1.4:82907455-82907474 None:intergenic 40.0%
TTTCAATAGCTACACCTTCC+TGG - chr1.4:82906908-82906927 None:intergenic 40.0%
! CGTGAAGTGTTTGAATCTTC+CGG + chr1.4:82905473-82905492 MS.gene065682:CDS 40.0%
! GTTTGTGTCTTTGTTTCAGG+CGG + chr1.4:82906686-82906705 MS.gene065682:intron 40.0%
! TGTTGAGCTTGTGAGTTTTG+AGG + chr1.4:82906413-82906432 MS.gene065682:CDS 40.0%
! TTCATTCCTTTGTGACTTGC+AGG + chr1.4:82907446-82907465 MS.gene065682:intron 40.0%
! TTGAGCATCTTATTGGTAGC+AGG - chr1.4:82906486-82906505 None:intergenic 40.0%
! TTGGTGATAAATTTGGCGAC+TGG + chr1.4:82907399-82907418 MS.gene065682:intron 40.0%
!! ACACTTGCTGTAATGGGATT+TGG + chr1.4:82906291-82906310 MS.gene065682:CDS 40.0%
!! CACTTGCTGTAATGGGATTT+GGG + chr1.4:82906292-82906311 MS.gene065682:CDS 40.0%
!! CATAACCAACTTGCTGTCTT+TGG - chr1.4:82906742-82906761 None:intergenic 40.0%
!! CTTGTTAGAGCATTGGATTC+TGG + chr1.4:82906585-82906604 MS.gene065682:CDS 40.0%
!! GAAGTTGATGTGAGTTTGGA+AGG + chr1.4:82907891-82907910 MS.gene065682:CDS 40.0%
!! TGGTATTGATAACGTGGATC+TGG + chr1.4:82905529-82905548 MS.gene065682:CDS 40.0%
!! TGGTGTTGGTATTGATAACG+TGG + chr1.4:82905523-82905542 MS.gene065682:CDS 40.0%
!!! TATCCCTCCAATTTTGAAGC+TGG + chr1.4:82907330-82907349 MS.gene065682:intron 40.0%
AACAACCTTGAGTCTTCCAC+CGG - chr1.4:82905495-82905514 None:intergenic 45.0%
AATAGCAGAAGCTGTCGTTG+GGG + chr1.4:82906926-82906945 MS.gene065682:CDS 45.0%
ACCAGGTATGATTGGAAAGG+TGG + chr1.4:82907944-82907963 MS.gene065682:CDS 45.0%
ACGAGTGTCAAGATCATCAG+GGG - chr1.4:82907592-82907611 None:intergenic 45.0%
AGACGAGTGTCAAGATCATC+AGG - chr1.4:82907594-82907613 None:intergenic 45.0%
AGAGAAAGGGAAGATGGTGA+AGG - chr1.4:82905191-82905210 None:intergenic 45.0%
AGCAAGTGTCTTCCCAACTA+GGG - chr1.4:82906280-82906299 None:intergenic 45.0%
AGCATCACAGAGAGAGATCT+TGG - chr1.4:82905423-82905442 None:intergenic 45.0%
ATCTTGCTGAGAAACTGGGT+AGG + chr1.4:82907496-82907515 MS.gene065682:CDS 45.0%
ATTTGGGAAGGTTGGAACTG+AGG + chr1.4:82906308-82906327 MS.gene065682:CDS 45.0%
CAAAGAGATGAAATCAGCGG+TGG - chr1.4:82906448-82906467 None:intergenic 45.0%
CATGGCTAGAAATGTTGCTC+AGG + chr1.4:82905643-82905662 MS.gene065682:CDS 45.0%
CCAGGTATGATTGGAAAGGT+GGG + chr1.4:82907945-82907964 MS.gene065682:CDS 45.0%
GAAATAGCAGAAGCTGTCGT+TGG + chr1.4:82906924-82906943 MS.gene065682:CDS 45.0%
GACGAGTGTCAAGATCATCA+GGG - chr1.4:82907593-82907612 None:intergenic 45.0%
GAGAAAGGGAAGATGGTGAA+GGG - chr1.4:82905190-82905209 None:intergenic 45.0%
GAGATTCCACGTTAGCAATC+TGG - chr1.4:82907779-82907798 None:intergenic 45.0%
GAGTTTGGAGGAGAGAGAAA+GGG - chr1.4:82905204-82905223 None:intergenic 45.0%
GCTAGTGCCATATCAGATTC+AGG + chr1.4:82907804-82907823 MS.gene065682:CDS 45.0%
GCTGATGCTTCTATCAAAGC+TGG + chr1.4:82905665-82905684 MS.gene065682:CDS 45.0%
GTAACTTACCTGAGCTTCCA+TGG - chr1.4:82906805-82906824 None:intergenic 45.0%
GTTACTGCAACACCTCATCT+TGG + chr1.4:82906771-82906790 MS.gene065682:CDS 45.0%
TACTGCAGTCAATGCACCAA+TGG + chr1.4:82906971-82906990 MS.gene065682:CDS 45.0%
TCAACTGCTATGTGTCCAAC+TGG + chr1.4:82907219-82907238 MS.gene065682:intron 45.0%
TTAGACACTGGTGGCAAAAG+GGG - chr1.4:82906866-82906885 None:intergenic 45.0%
! GAAGTGTTTGAATCTTCCGG+TGG + chr1.4:82905476-82905495 MS.gene065682:CDS 45.0%
! GGATGCACTTGTTAGAGCAT+TGG + chr1.4:82906578-82906597 MS.gene065682:CDS 45.0%
! GTAATGGGATTTGGGAAGGT+TGG + chr1.4:82906300-82906319 MS.gene065682:CDS 45.0%
! TGCTGTAATGGGATTTGGGA+AGG + chr1.4:82906296-82906315 MS.gene065682:CDS 45.0%
! TTATTGGTAGCAGGCGTAAG+AGG - chr1.4:82906477-82906496 None:intergenic 45.0%
! TTTTGTTCCTAGCACCTCTG+AGG - chr1.4:82907000-82907019 None:intergenic 45.0%
!! AACCAACTTGCTGTCTTTGG+TGG - chr1.4:82906739-82906758 None:intergenic 45.0%
!! ACCAACTTGCTGTCTTTGGT+GGG - chr1.4:82906738-82906757 None:intergenic 45.0%
!! GGATTCTGGAATTGTAGCTC+AGG + chr1.4:82906599-82906618 MS.gene065682:CDS 45.0%
!! GGGAAGACACTTGCTGTAAT+GGG + chr1.4:82906285-82906304 MS.gene065682:CDS 45.0%
!! TCAGCTTCATGAGTGTTGGA+AGG + chr1.4:82907997-82908016 MS.gene065682:CDS 45.0%
!! TGGGAAGACACTTGCTGTAA+TGG + chr1.4:82906284-82906303 MS.gene065682:CDS 45.0%
!!! TGAGCTTGTGAGTTTTGAGG+AGG + chr1.4:82906416-82906435 MS.gene065682:CDS 45.0%
!! ACTTAAATTAATAATTAATT+GGG + chr1.4:82906649-82906668 MS.gene065682:intron 5.0%
!! TACTTAAATTAATAATTAAT+TGG + chr1.4:82906648-82906667 MS.gene065682:intron 5.0%
AAGCAGGCTGTGATGGCAAT+TGG + chr1.4:82908032-82908051 MS.gene065682:CDS 50.0%
AAGTGACTTACGCTTCCGCT+AGG + chr1.4:82907565-82907584 MS.gene065682:CDS 50.0%
ACCCACCAAAGACAGCAAGT+TGG + chr1.4:82906734-82906753 MS.gene065682:CDS 50.0%
AGGTTGGAACTGAGGTTGCT+AGG + chr1.4:82906316-82906335 MS.gene065682:CDS 50.0%
AGTGACTTACGCTTCCGCTA+GGG + chr1.4:82907566-82907585 MS.gene065682:CDS 50.0%
ATAGCATGAGCACGATCAGC+AGG - chr1.4:82906390-82906409 None:intergenic 50.0%
ATCAGATTCAGGGGAGGTCA+CGG + chr1.4:82907815-82907834 MS.gene065682:CDS 50.0%
ATCTTCCGGTGGAAGACTCA+AGG + chr1.4:82905487-82905506 MS.gene065682:CDS 50.0%
CAAGCAACCATGTTCGGTAG+CGG - chr1.4:82905558-82905577 None:intergenic 50.0%
CAGCAAGTGTCTTCCCAACT+AGG - chr1.4:82906281-82906300 None:intergenic 50.0%
CCAAGTCCAGATTGCTAACG+TGG + chr1.4:82907770-82907789 MS.gene065682:CDS 50.0%
CCACGTTAGCAATCTGGACT+TGG - chr1.4:82907773-82907792 None:intergenic 50.0%
CCCACCTTTCCAATCATACC+TGG - chr1.4:82907948-82907967 None:intergenic 50.0%
CTCCTACAATCTCACTCCTG+AGG + chr1.4:82905388-82905407 MS.gene065682:CDS 50.0%
CTCCTCAGGAGTGAGATTGT+AGG - chr1.4:82905393-82905412 None:intergenic 50.0%
GACCTCCCCTGAATCTGATA+TGG - chr1.4:82907814-82907833 None:intergenic 50.0%
GAGGAGAGAGAAAGGGAAGA+TGG - chr1.4:82905197-82905216 None:intergenic 50.0%
GCTGATCGTGCTCATGCTAT+TGG + chr1.4:82906390-82906409 MS.gene065682:CDS 50.0%
GGAGTTTGGAGGAGAGAGAA+AGG - chr1.4:82905205-82905224 None:intergenic 50.0%
GGTGGAAGACTCAAGGTTGT+TGG + chr1.4:82905494-82905513 MS.gene065682:CDS 50.0%
GGTTTGGGAAGTAGCGTTAG+CGG - chr1.4:82905159-82905178 None:intergenic 50.0%
GTCCCCCATCTTACAAAGGT+TGG + chr1.4:82907861-82907880 MS.gene065682:CDS 50.0%
TACCTGAGCTTCCATGGTAC+TGG - chr1.4:82906799-82906818 None:intergenic 50.0%
TCAGTGTCAGACACTCACAC+AGG - chr1.4:82906089-82906108 None:intergenic 50.0%
TGCACCAATGGTTTCCTCAG+AGG + chr1.4:82906983-82907002 MS.gene065682:CDS 50.0%
TGCAGGCAAGTAGATCAACC+AGG + chr1.4:82907927-82907946 MS.gene065682:CDS 50.0%
TGCCATATCAGATTCAGGGG+AGG + chr1.4:82907809-82907828 MS.gene065682:CDS 50.0%
TGCTGAGAAACTGGGTAGGT+TGG + chr1.4:82907500-82907519 MS.gene065682:CDS 50.0%
TGGTGTCCCCCATCTTACAA+AGG + chr1.4:82907857-82907876 MS.gene065682:CDS 50.0%
! AGCACCTCTGAGGAAACCAT+TGG - chr1.4:82906990-82907009 None:intergenic 50.0%
! ATCTTGGTGCAAAGCTCCTC+AGG - chr1.4:82905407-82905426 None:intergenic 50.0%
! CTCAAGGTTGTTGGTAGAGC+TGG + chr1.4:82905503-82905522 MS.gene065682:CDS 50.0%
! GGCGGCTCTTGATGTTTTCA+CGG + chr1.4:82906704-82906723 MS.gene065682:intron 50.0%
! GGCTCTTGATGTTTTCACGG+TGG + chr1.4:82906707-82906726 MS.gene065682:CDS 50.0%
! GTTGTTGGTAGAGCTGGTGT+TGG + chr1.4:82905509-82905528 MS.gene065682:CDS 50.0%
! TGCTAAGGGGCTTGGTATGA+AGG + chr1.4:82906341-82906360 MS.gene065682:CDS 50.0%
!! AACTTGCTGTCTTTGGTGGG+TGG - chr1.4:82906735-82906754 None:intergenic 50.0%
!! ATGGTACTGGCACCAAGATG+AGG - chr1.4:82906786-82906805 None:intergenic 50.0%
!! ATGGTTTCCTCAGAGGTGCT+AGG + chr1.4:82906990-82907009 MS.gene065682:intron 50.0%
!! CTGTCGTTGGGGCTTTGAAA+GGG + chr1.4:82906937-82906956 MS.gene065682:CDS 50.0%
!! GGAAAGGTGGGAAGCATCTT+GGG + chr1.4:82907957-82907976 MS.gene065682:CDS 50.0%
!! TCATCTTGGTGCCAGTACCA+TGG + chr1.4:82906785-82906804 MS.gene065682:CDS 50.0%
!! TGGAAAGGTGGGAAGCATCT+TGG + chr1.4:82907956-82907975 MS.gene065682:CDS 50.0%
!! TGTCGTTGGGGCTTTGAAAG+GGG + chr1.4:82906938-82906957 MS.gene065682:CDS 50.0%
AAGAGGAGACGAAGACGACG+AGG - chr1.4:82905280-82905299 None:intergenic 55.0%
AAGATCATCAGGGGCCCTAG+CGG - chr1.4:82907583-82907602 None:intergenic 55.0%
AAGATGGTGAAGGGAGACGG+AGG - chr1.4:82905181-82905200 None:intergenic 55.0%
AAGGATTGCTCCACGCAAGC+AGG + chr1.4:82908016-82908035 MS.gene065682:CDS 55.0%
AGACGAAGACGACGAGGGAA+CGG - chr1.4:82905274-82905293 None:intergenic 55.0%
AGAGGAGACGAAGACGACGA+GGG - chr1.4:82905279-82905298 None:intergenic 55.0%
AGATGGTGAAGGGAGACGGA+GGG - chr1.4:82905180-82905199 None:intergenic 55.0%
AGGTTGCTAGGCGTGCTAAG+GGG + chr1.4:82906328-82906347 MS.gene065682:CDS 55.0%
CAACTGGTAGCAGGAGGAAG+CGG + chr1.4:82907528-82907547 MS.gene065682:CDS 55.0%
CGCTACCGAACATGGTTGCT+TGG + chr1.4:82905556-82905575 MS.gene065682:CDS 55.0%
GAGGTTGCTAGGCGTGCTAA+GGG + chr1.4:82906327-82906346 MS.gene065682:CDS 55.0%
GATGCTCTCATCGTTCGCAG+TGG + chr1.4:82905437-82905456 MS.gene065682:CDS 55.0%
GGGAAGATGGTGAAGGGAGA+CGG - chr1.4:82905184-82905203 None:intergenic 55.0%
GTCCTCGTCGCTGAAAAGCT+CGG + chr1.4:82905320-82905339 MS.gene065682:CDS 55.0%
TGAAGGGAGACGGAGGGTTT+GGG - chr1.4:82905174-82905193 None:intergenic 55.0%
TGAGGTTGCTAGGCGTGCTA+AGG + chr1.4:82906326-82906345 MS.gene065682:CDS 55.0%
TGCCAGTACCATGGAAGCTC+AGG + chr1.4:82906794-82906813 MS.gene065682:CDS 55.0%
TTGGCTGTCCAACTGGTAGC+AGG + chr1.4:82907519-82907538 MS.gene065682:CDS 55.0%
TTGGGAAGTAGCGTTAGCGG+CGG - chr1.4:82905156-82905175 None:intergenic 55.0%
! GAGCTTTTCAGCGACGAGGA+CGG - chr1.4:82905321-82905340 None:intergenic 55.0%
! GCACGATCAGCAGGAGCATA+AGG - chr1.4:82906381-82906400 None:intergenic 55.0%
! TCGTGGTGGAGTCATTGACG+AGG + chr1.4:82906557-82906576 MS.gene065682:CDS 55.0%
! TTTTCAGCGACGAGGACGGT+GGG - chr1.4:82905317-82905336 None:intergenic 55.0%
!! GCTGTCGTTGGGGCTTTGAA+AGG + chr1.4:82906936-82906955 MS.gene065682:CDS 55.0%
ACTGTTGCCGCCGCTGAACA+CGG + chr1.4:82905602-82905621 MS.gene065682:CDS 60.0%
AGATTCAGGGGAGGTCACGG+TGG + chr1.4:82907818-82907837 MS.gene065682:CDS 60.0%
AGCGGCGGCAACAGTGTTAG+CGG - chr1.4:82905597-82905616 None:intergenic 60.0%
CGCTTCCTCCTGCTACCAGT+TGG - chr1.4:82907530-82907549 None:intergenic 60.0%
GATCGCGCTCTTAGCTGGCA+TGG + chr1.4:82905625-82905644 MS.gene065682:CDS 60.0%
GCGGCAACAGTGTTAGCGGT+GGG - chr1.4:82905593-82905612 None:intergenic 60.0%
GCTGAAAAGCTCGGCGAAGC+TGG + chr1.4:82905329-82905348 MS.gene065682:CDS 60.0%
GCTGTCCAACTGGTAGCAGG+AGG + chr1.4:82907522-82907541 MS.gene065682:CDS 60.0%
GGAGGAGAGAGGGAGTTTGG+AGG - chr1.4:82905216-82905235 None:intergenic 60.0%
GTGAAGGGAGACGGAGGGTT+TGG - chr1.4:82905175-82905194 None:intergenic 60.0%
GTGGAGGGTCGTGTGAAGGA+TGG + chr1.4:82907837-82907856 MS.gene065682:CDS 60.0%
TCCACGCAAGCAGGCTGTGA+TGG + chr1.4:82908025-82908044 MS.gene065682:CDS 60.0%
! CTTTTCAGCGACGAGGACGG+TGG - chr1.4:82905318-82905337 None:intergenic 60.0%
! GACGGTGGGTTTAGCGTCGA+GGG - chr1.4:82905303-82905322 None:intergenic 60.0%
! GCAACCATGTTCGGTAGCGG+CGG - chr1.4:82905555-82905574 None:intergenic 60.0%
! GGGTAGGTTGGCTGTCCAAC+TGG + chr1.4:82907512-82907531 MS.gene065682:CDS 60.0%
! GGGTTTAGCGTCGAGGGAAG+AGG - chr1.4:82905297-82905316 None:intergenic 60.0%
AAGACGACGAGGGAACGGCG+GGG - chr1.4:82905269-82905288 None:intergenic 65.0%
ACGGAGAAGGCGGAGGAGAG+AGG - chr1.4:82905227-82905246 None:intergenic 65.0%
ACGGAGGGAGACGGAGAAGG+CGG - chr1.4:82905237-82905256 None:intergenic 65.0%
CACGGGATCGCGCTCTTAGC+TGG + chr1.4:82905620-82905639 MS.gene065682:CDS 65.0%
CACGGTGGAGGGTCGTGTGA+AGG + chr1.4:82907833-82907852 MS.gene065682:CDS 65.0%
CGAAGACGACGAGGGAACGG+CGG - chr1.4:82905271-82905290 None:intergenic 65.0%
CGGAGAAGGCGGAGGAGAGA+GGG - chr1.4:82905226-82905245 None:intergenic 65.0%
CTGTTGCCGCCGCTGAACAC+GGG + chr1.4:82905603-82905622 MS.gene065682:CDS 65.0%
GAAGACGACGAGGGAACGGC+GGG - chr1.4:82905270-82905289 None:intergenic 65.0%
GAGCGCGATCCCGTGTTCAG+CGG - chr1.4:82905615-82905634 None:intergenic 65.0%
GCCATCACAGCCTGCTTGCG+TGG - chr1.4:82908029-82908048 None:intergenic 65.0%
GCTAGGCGTGCTAAGGGGCT+TGG + chr1.4:82906333-82906352 MS.gene065682:CDS 65.0%
GGAAGTAGCGTTAGCGGCGG+CGG - chr1.4:82905153-82905172 None:intergenic 65.0%
GGCGGAGGAGAGAGGGAGTT+TGG - chr1.4:82905219-82905238 None:intergenic 65.0%
GGCGGCAACAGTGTTAGCGG+TGG - chr1.4:82905594-82905613 None:intergenic 65.0%
GTTGTGGGGACGGAGGGAGA+CGG - chr1.4:82905246-82905265 None:intergenic 65.0%
TCAGGGGAGGTCACGGTGGA+GGG + chr1.4:82907822-82907841 MS.gene065682:CDS 65.0%
TTCAGGGGAGGTCACGGTGG+AGG + chr1.4:82907821-82907840 MS.gene065682:CDS 65.0%
! CGCCGAGCTTTTCAGCGACG+AGG - chr1.4:82905325-82905344 None:intergenic 65.0%
! GGACGGTGGGTTTAGCGTCG+AGG - chr1.4:82905304-82905323 None:intergenic 65.0%
AACGGCGGGGGTTGTGGGGA+CGG - chr1.4:82905256-82905275 None:intergenic 70.0%
AGACGACGAGGGAACGGCGG+GGG - chr1.4:82905268-82905287 None:intergenic 70.0%
AGGGAACGGCGGGGGTTGTG+GGG - chr1.4:82905260-82905279 None:intergenic 70.0%
CGCGATCCCGTGTTCAGCGG+CGG - chr1.4:82905612-82905631 None:intergenic 70.0%
CTGGCCGCCGCTACCGAACA+TGG + chr1.4:82905548-82905567 MS.gene065682:CDS 70.0%
GAGGGAACGGCGGGGGTTGT+GGG - chr1.4:82905261-82905280 None:intergenic 70.0%
GAGGGAGACGGAGAAGGCGG+AGG - chr1.4:82905234-82905253 None:intergenic 70.0%
GGGACGGAGGGAGACGGAGA+AGG - chr1.4:82905240-82905259 None:intergenic 70.0%
CGAGGGAACGGCGGGGGTTG+TGG - chr1.4:82905262-82905281 None:intergenic 75.0%
GCGGGGGTTGTGGGGACGGA+GGG - chr1.4:82905252-82905271 None:intergenic 75.0%
! GGCGGGGGTTGTGGGGACGG+AGG - chr1.4:82905253-82905272 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 82905146 82908139 82905146 ID=MS.gene065682
chr1.4 mRNA 82905146 82908139 82905146 ID=MS.gene065682.t1;Parent=MS.gene065682
chr1.4 exon 82905146 82905686 82905146 ID=MS.gene065682.t1.exon1;Parent=MS.gene065682.t1
chr1.4 CDS 82905146 82905686 82905146 ID=cds.MS.gene065682.t1;Parent=MS.gene065682.t1
chr1.4 exon 82906244 82906620 82906244 ID=MS.gene065682.t1.exon2;Parent=MS.gene065682.t1
chr1.4 CDS 82906244 82906620 82906244 ID=cds.MS.gene065682.t1;Parent=MS.gene065682.t1
chr1.4 exon 82906705 82906815 82906705 ID=MS.gene065682.t1.exon3;Parent=MS.gene065682.t1
chr1.4 CDS 82906705 82906815 82906705 ID=cds.MS.gene065682.t1;Parent=MS.gene065682.t1
chr1.4 exon 82906909 82907004 82906909 ID=MS.gene065682.t1.exon4;Parent=MS.gene065682.t1
chr1.4 CDS 82906909 82907004 82906909 ID=cds.MS.gene065682.t1;Parent=MS.gene065682.t1
chr1.4 exon 82907468 82908139 82907468 ID=MS.gene065682.t1.exon5;Parent=MS.gene065682.t1
chr1.4 CDS 82907468 82908139 82907468 ID=cds.MS.gene065682.t1;Parent=MS.gene065682.t1
Gene Sequence

>MS.gene065682

ATGGCCGCCGCCGCTAACGCTACTTCCCAAACCCTCCGTCTCCCTTCACCATCTTCCCTTTCTCTCTCCTCCAAACTCCCTCTCTCCTCCGCCTTCTCCGTCTCCCTCCGTCCCCACAACCCCCGCCGTTCCCTCGTCGTCTTCGTCTCCTCTTCCCTCGACGCTAAACCCACCGTCCTCGTCGCTGAAAAGCTCGGCGAAGCTGGTCTCACTCTTCTCAAAGACTTCGCTAACGTCGACTGCTCCTACAATCTCACTCCTGAGGAGCTTTGCACCAAGATCTCTCTCTGTGATGCTCTCATCGTTCGCAGTGGTACCAAAGTCTCACGTGAAGTGTTTGAATCTTCCGGTGGAAGACTCAAGGTTGTTGGTAGAGCTGGTGTTGGTATTGATAACGTGGATCTGGCCGCCGCTACCGAACATGGTTGCTTGGTTGTTAATGCTCCCACCGCTAACACTGTTGCCGCCGCTGAACACGGGATCGCGCTCTTAGCTGGCATGGCTAGAAATGTTGCTCAGGCTGATGCTTCTATCAAAGCTGGTAAAGTTCTTTTTTTCATAGCAGCATTTTATCGAACACCTTGTTTGTTATATTTTTTTTTAGATCCTGATGATTTTGTTGTGTTTTTTAGTGTTAGTTATTTGGGTACTTTTTGTTTTGTTTCAATTCACATCACATGCTTTTATTCTTTATATTGTTAACTACTAGTTGACTAGGTGACGTAATGGTAAAATTTTCTGTGTAAAGGAGGAAACTTCTTTTCCTCATATACCAATTTGTGTGTGGTGAATTCTTTTTGTATAAATGTTGAGATCTAATGATATATATGGGGGTAAAGTTTTGATTTTTTTTCTTCTTCCGTGTAATCTGTAATGGGTGTTAATGTTGTGGCTTCTGTTATTTGCTTTGCAACATTGTCACTTCTGATCAAAGGCGTGTCCTGTGTGAGTGTCTGACACTGACAATGACATATGTGACAAAACCGAATAATGTCATTTTCTCAAATTATTATCGTTGTCAAAGCGTTTGTGTCTGTGCTGCATAAGTTATTAGTTGATATGGTTAATTGAATTAGTGTTGATACATGGTCAATACAGGGAAATGGGAGAGAAGTAAGTATGTTGGAGTTTCCCTAGTTGGGAAGACACTTGCTGTAATGGGATTTGGGAAGGTTGGAACTGAGGTTGCTAGGCGTGCTAAGGGGCTTGGTATGAAGGTTATTGCTCATGATCCTTATGCTCCTGCTGATCGTGCTCATGCTATTGGTGTTGAGCTTGTGAGTTTTGAGGAGGCTATTGCCACCGCTGATTTCATCTCTTTGCACATGCCTCTTACGCCTGCTACCAATAAGATGCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGAGTTAGAATTGTTAATGTTGCTCGTGGTGGAGTCATTGACGAGGATGCACTTGTTAGAGCATTGGATTCTGGAATTGTAGCTCAGGTTTGAAGCACTGAGCCACTTTTAGTTTACTTAAATTAATAATTAATTGGGTTGAAATACTGATAGTTTGTGTCTTTGTTTCAGGCGGCTCTTGATGTTTTCACGGTGGAACCACCCACCAAAGACAGCAAGTTGGTTATGCATGAGCTAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGTAAGTTACCTAAGCAATTGCCTATGACTATGAGTTATAGCTTTGTTCCCCTTTTGCCACCAGTGTCTAATAACCTTTGAAAATGATGACCAGGAAGGTGTAGCTATTGAAATAGCAGAAGCTGTCGTTGGGGCTTTGAAAGGGGAGCTTGCTTCTACTGCAGTCAATGCACCAATGGTTTCCTCAGAGGTGCTAGGAACAAAACTATCATATTTATCCTTTTATTTCATGATAAAAATAACCTTGCCTCTTGATATTGTTACTGCTTCTCTTCCTTATCTATATCCAAGCAATATGGTTTCCAAAATCATTCTAAATAGTAAATTCTTTGACTTATTGTGTAACCATATTCATATATTGAAAACGATTTTGGAACAAAATGGTTGTCTTAAATTGTTAAATTTCAACTGCTATGTGTCCAACTGGTTCAAATTAAATACTACTCAAGTGAAGGCAAAAGTTTGATTTGAGAAATCTAATACATGGATCTTAATGAGTTTTTTTTGCTCGGCTTTATCCCTCCAATTTTGAAGCTGGCTTTATCTAGAGCTTATCCTAATACAAAATGATTCATGGATTGGAGTTGGTGATAAATTTGGCGACTGGAATGACTCAAAGTTTAACATATGTTTCATTCCTTTGTGACTTGCAGGTGTTAACAGAACTAAAACCATTTGTTGATCTTGCTGAGAAACTGGGTAGGTTGGCTGTCCAACTGGTAGCAGGAGGAAGCGGTGTAAAGACAGTGAAAGTGACTTACGCTTCCGCTAGGGCCCCTGATGATCTTGACACTCGTCTTCTTCGTGCTATGATAACAAAGGGTCTGATTGAGCCCATATCCAGTGTTTTCGTGAACTTAGTTAATGCTGACTTCACTGCTAAACAAAGAGGGCTAAGAATTACTGAGGAGAGAGTTATTCTTGATGGTTCACCTGAGAATCCACTTGAATTCATCCAAGTCCAGATTGCTAACGTGGAATCTCGATTTGCTAGTGCCATATCAGATTCAGGGGAGGTCACGGTGGAGGGTCGTGTGAAGGATGGTGTCCCCCATCTTACAAAGGTTGGATCTTTTGAAGTTGATGTGAGTTTGGAAGGTAGCATTATACTTTGCAGGCAAGTAGATCAACCAGGTATGATTGGAAAGGTGGGAAGCATCTTGGGTGAAGAGAATGTGAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCACGCAAGCAGGCTGTGATGGCAATTGGAGTTGATGAGCAACCACGCAAAGAATCTTTGCAAAGGATTGGAGACATTCCTGCTGTTGAAGAATTTGTTTTCCTCAAGTTGTAA

Protein sequence

>MS.gene065682.t1

MAAAANATSQTLRLPSPSSLSLSSKLPLSSAFSVSLRPHNPRRSLVVFVSSSLDAKPTVLVAEKLGEAGLTLLKDFANVDCSYNLTPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAGMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMKVIAHDPYAPADRAHAIGVELVSFEEAIATADFISLHMPLTPATNKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPTKDSKLVMHELVTATPHLGASTMEAQEGVAIEIAEAVVGALKGELASTAVNAPMVSSEVLTELKPFVDLAEKLGRLAVQLVAGGSGVKTVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEVTVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPRKESLQRIGDIPAVEEFVFLKL