Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066085.t1 | XP_003608997.2 | 95.5 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 4.20E-149 | 537.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066085.t1 | Q6L4S3 | 89.7 | 281 | 29 | 0 | 1 | 281 | 1 | 281 | 2.5e-142 | 506.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066085.t1 | G7JPW8 | 95.5 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 3.0e-149 | 537.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057102 | MS.gene066085 | 0.800572 | 1.35E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066085 | MS.gene055768 | PPI |
| MS.gene066085 | MS.gene59292 | PPI |
| MS.gene68929 | MS.gene066085 | PPI |
| MS.gene066085 | MS.gene029948 | PPI |
| MS.gene066085 | MS.gene030984 | PPI |
| MS.gene066085 | MS.gene028857 | PPI |
| MS.gene31416 | MS.gene066085 | PPI |
| MS.gene043467 | MS.gene066085 | PPI |
| MS.gene20481 | MS.gene066085 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066085.t1 | MTR_4g107810 | 95.455 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 0.0 | 551 |
| MS.gene066085.t1 | MTR_4g107760 | 95.455 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 0.0 | 551 |
| MS.gene066085.t1 | MTR_4g107810 | 95.455 | 286 | 13 | 0 | 1 | 286 | 61 | 346 | 0.0 | 550 |
| MS.gene066085.t1 | MTR_4g107830 | 89.226 | 297 | 17 | 1 | 1 | 282 | 1 | 297 | 0.0 | 543 |
| MS.gene066085.t1 | MTR_4g107720 | 95.035 | 282 | 14 | 0 | 1 | 282 | 1 | 282 | 0.0 | 540 |
| MS.gene066085.t1 | MTR_6g011380 | 82.105 | 285 | 51 | 0 | 1 | 285 | 1 | 285 | 1.79e-178 | 493 |
| MS.gene066085.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 9.55e-178 | 491 |
| MS.gene066085.t1 | MTR_8g469160 | 77.817 | 284 | 63 | 0 | 1 | 284 | 1 | 284 | 2.99e-175 | 485 |
| MS.gene066085.t1 | MTR_6g460470 | 55.749 | 287 | 125 | 1 | 1 | 285 | 1 | 287 | 5.31e-116 | 335 |
| MS.gene066085.t1 | MTR_4g107700 | 98.765 | 81 | 1 | 0 | 202 | 282 | 6 | 86 | 4.63e-51 | 163 |
| MS.gene066085.t1 | MTR_3g093220 | 29.508 | 183 | 123 | 5 | 19 | 199 | 71 | 249 | 6.41e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066085.t1 | AT5G62740 | 88.298 | 282 | 33 | 0 | 1 | 282 | 1 | 282 | 0.0 | 524 |
| MS.gene066085.t1 | AT3G01290 | 79.787 | 282 | 57 | 0 | 1 | 282 | 1 | 282 | 3.18e-171 | 475 |
| MS.gene066085.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene066085.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene066085.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene066085.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene066085.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene066085.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene066085.t1 | AT1G69840 | 80.420 | 286 | 56 | 0 | 1 | 286 | 1 | 286 | 3.80e-170 | 472 |
| MS.gene066085.t1 | AT5G51570 | 56.294 | 286 | 123 | 1 | 1 | 284 | 1 | 286 | 4.26e-120 | 346 |
Find 63 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.145360 | 8.1:-17044326 | MS.gene066085:CDS |
| GCATCATCCAAGTTGAGTTT+TGG | 0.266671 | 8.1:+17045323 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.1:+17044237 | None:intergenic |
| CATTGCATGCCATGGTTTCT+TGG | 0.290257 | 8.1:-17045957 | MS.gene066085:CDS |
| ATGTTCTCATTGCAGTGATT+AGG | 0.311568 | 8.1:-17045355 | MS.gene066085:intron |
| TGTTCTCATTGCAGTGATTA+GGG | 0.312025 | 8.1:-17045354 | MS.gene066085:intron |
| TTGACACTATGAAAGAAATT+GGG | 0.333677 | 8.1:-17044325 | MS.gene066085:CDS |
| CACTCTTCGGCTACAACAAT+TGG | 0.343058 | 8.1:-17045913 | MS.gene066085:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.1:-17045180 | MS.gene066085:intron |
| TGCAAAAGATGTCATGGATA+TGG | 0.384185 | 8.1:-17044366 | MS.gene066085:CDS |
| TTTCTTGGAAAACGAATTGC+TGG | 0.394254 | 8.1:-17045942 | MS.gene066085:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.398028 | 8.1:-17046011 | MS.gene066085:CDS |
| GCCGCCTTCACATGCTGATC+TGG | 0.418175 | 8.1:+17045120 | None:intergenic |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.1:-17044234 | MS.gene066085:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8.1:-17044476 | MS.gene066085:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.1:-17045985 | MS.gene066085:CDS |
| TTGCTGGTCATCTCACTCTT+CGG | 0.485262 | 8.1:-17045926 | MS.gene066085:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.1:-17045542 | MS.gene066085:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.503619 | 8.1:-17045965 | MS.gene066085:CDS |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8.1:-17044471 | MS.gene066085:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.1:-17045984 | MS.gene066085:CDS |
| TGTGATCAGCTGCAAGATTG+AGG | 0.516144 | 8.1:-17044562 | MS.gene066085:intron |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.1:+17045966 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.1:+17044295 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.1:-17044281 | MS.gene066085:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.1:-17044437 | MS.gene066085:CDS |
| TAACAAACCAACCTTTGTCT+TGG | 0.535367 | 8.1:+17045875 | None:intergenic |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8.1:-17044470 | MS.gene066085:CDS |
| TGACACTATGAAAGAAATTG+GGG | 0.552857 | 8.1:-17044324 | MS.gene066085:CDS |
| GTGATCAGCTGCAAGATTGA+GGG | 0.554251 | 8.1:-17044561 | MS.gene066085:intron |
| GGTTTGAGAGACAGTGTGAT+CGG | 0.554761 | 8.1:-17044416 | MS.gene066085:CDS |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.1:+17044263 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.1:-17044287 | MS.gene066085:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8.1:-17044475 | MS.gene066085:CDS |
| AAGCGTTCCAAAACTCAACT+TGG | 0.571578 | 8.1:-17045330 | MS.gene066085:CDS |
| GACGACTGCAAAAGATGTCA+TGG | 0.572197 | 8.1:-17044372 | MS.gene066085:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.1:+17044298 | None:intergenic |
| AATTAAGCGAGCTGAGGGTG+AGG | 0.574736 | 8.1:-17044498 | MS.gene066085:CDS |
| GCTATGAATGAAATCAATGC+TGG | 0.578813 | 8.1:-17045099 | MS.gene066085:intron |
| CAAGAAACCATGGCATGCAA+TGG | 0.579517 | 8.1:+17045958 | None:intergenic |
| AAATGAAATCGCAAAAGCTG+TGG | 0.586140 | 8.1:-17045288 | MS.gene066085:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.1:-17045533 | MS.gene066085:CDS |
| TCTCAAGTGGCTATGAGAGA+AGG | 0.594736 | 8.1:-17046017 | MS.gene066085:CDS |
| GCCAGATCAGCATGTGAAGG+CGG | 0.594901 | 8.1:-17045121 | MS.gene066085:CDS |
| ATCATTAGCCTTGTCTGCCA+AGG | 0.596483 | 8.1:+17045525 | None:intergenic |
| TTGCAAATTAAGCGAGCTGA+GGG | 0.599808 | 8.1:-17044503 | MS.gene066085:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.1:-17045270 | MS.gene066085:intron |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.1:-17046030 | MS.gene066085:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.1:-17044245 | MS.gene066085:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.1:+17045530 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.624349 | 8.1:-17045498 | MS.gene066085:CDS |
| CTTGCAAATTAAGCGAGCTG+AGG | 0.626190 | 8.1:-17044504 | MS.gene066085:CDS |
| GAGGGTGGCAGCGAATGAGA+AGG | 0.631840 | 8.1:-17044543 | MS.gene066085:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.1:-17044233 | MS.gene066085:CDS |
| TCGCCAACGTCAAGCCATTG+TGG | 0.640251 | 8.1:-17044441 | MS.gene066085:CDS |
| AGAGCCAGATCAGCATGTGA+AGG | 0.648209 | 8.1:-17045124 | MS.gene066085:CDS |
| CATCCACAATGGCTTGACGT+TGG | 0.649829 | 8.1:+17044438 | None:intergenic |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.1:-17045886 | MS.gene066085:intron |
| ACTCATGAGATAGAGAACCC+TGG | 0.652343 | 8.1:+17044216 | None:intergenic |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8.1:+17044427 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.1:+17044272 | None:intergenic |
| TGTCAAAATATTGAGTGACA+AGG | 0.695273 | 8.1:+17044342 | None:intergenic |
| ATCAGCTGCAAGATTGAGGG+TGG | 0.703805 | 8.1:-17044558 | MS.gene066085:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGCAAATTATCTAATA+AGG | - | chr8.1:17044881-17044900 | MS.gene066085:intron | 15.0% |
| !! | GAAATAAGTATAAGAAAATA+TGG | + | chr8.1:17045680-17045699 | None:intergenic | 15.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | + | chr8.1:17044472-17044491 | None:intergenic | 15.0% |
| !!! | TTTAGCTAGAATATTTTTTT+AGG | - | chr8.1:17044491-17044510 | MS.gene066085:CDS | 15.0% |
| !! | TTTAATATTTATTTGGTTGC+AGG | - | chr8.1:17044677-17044696 | MS.gene066085:intron | 20.0% |
| !! | TTTCATTGCACAAATTATTT+AGG | - | chr8.1:17045451-17045470 | MS.gene066085:intron | 20.0% |
| !!! | ACAAATAGTATTTACTGATT+AGG | - | chr8.1:17045031-17045050 | MS.gene066085:intron | 20.0% |
| !!! | GTCTGGTTTTAATATTTATT+TGG | - | chr8.1:17044670-17044689 | MS.gene066085:intron | 20.0% |
| ! | ACCAGACAACATTAATTTAA+TGG | + | chr8.1:17044657-17044676 | None:intergenic | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | + | chr8.1:17044463-17044482 | None:intergenic | 25.0% |
| ! | CATATAGAAACAATGTTGTA+GGG | + | chr8.1:17045220-17045239 | None:intergenic | 25.0% |
| ! | CTTATATGTTTGCTTAAGTA+TGG | - | chr8.1:17044543-17044562 | MS.gene066085:CDS | 25.0% |
| ! | TCATATAGAAACAATGTTGT+AGG | + | chr8.1:17045221-17045240 | None:intergenic | 25.0% |
| ! | TCCATTAAATTAATGTTGTC+TGG | - | chr8.1:17044653-17044672 | MS.gene066085:intron | 25.0% |
| ! | TGTGCAATGAAAATAGATTT+AGG | + | chr8.1:17045443-17045462 | None:intergenic | 25.0% |
| ! | TTACACTTCATACAATATCT+AGG | + | chr8.1:17045578-17045597 | None:intergenic | 25.0% |
| ! | TTGACACTATGAAAGAAATT+GGG | - | chr8.1:17045942-17045961 | MS.gene066085:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.1:17045941-17045960 | MS.gene066085:CDS | 25.0% |
| !! | TAATTTTGAATCATCTCAAC+AGG | - | chr8.1:17045071-17045090 | MS.gene066085:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.1:17044270-17044289 | MS.gene066085:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.1:17044798-17044817 | MS.gene066085:intron | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | + | chr8.1:17044594-17044613 | None:intergenic | 25.0% |
| !!! | TATTTTTTTAGGTGTCATCT+TGG | - | chr8.1:17044502-17044521 | MS.gene066085:CDS | 25.0% |
| AAAGAAGCAAAACAAACCAA+AGG | + | chr8.1:17045482-17045501 | None:intergenic | 30.0% | |
| AAGAAAATATGGACGAACAA+AGG | + | chr8.1:17045669-17045688 | None:intergenic | 30.0% | |
| AAGAAGCAAAACAAACCAAA+GGG | + | chr8.1:17045481-17045500 | None:intergenic | 30.0% | |
| AATTATTTAGGCATTCCCTT+TGG | - | chr8.1:17045463-17045482 | MS.gene066085:intron | 30.0% | |
| ACATGTATGGAAAACTATTG+AGG | - | chr8.1:17045377-17045396 | MS.gene066085:intron | 30.0% | |
| AGAAAATATGGACGAACAAA+GGG | + | chr8.1:17045668-17045687 | None:intergenic | 30.0% | |
| ATTTATCTTATTCCCCAAAG+AGG | - | chr8.1:17045277-17045296 | MS.gene066085:CDS | 30.0% | |
| TACATGTATGACGAACTATA+AGG | + | chr8.1:17045364-17045383 | None:intergenic | 30.0% | |
| TATAGTTCGTCATACATGTA+TGG | - | chr8.1:17045364-17045383 | MS.gene066085:intron | 30.0% | |
| TGACACTATGAAAGAAATTG+GGG | - | chr8.1:17045943-17045962 | MS.gene066085:CDS | 30.0% | |
| TGTCAAAATATTGAGTGACA+AGG | + | chr8.1:17045928-17045947 | None:intergenic | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.1:17044769-17044788 | MS.gene066085:intron | 30.0% | |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.1:17045873-17045892 | MS.gene066085:intron | 30.0% |
| !!! | TGGTTTGTTTTGCTTCTTTA+GGG | - | chr8.1:17045483-17045502 | MS.gene066085:CDS | 30.0% |
| !!! | TTGGTTTGTTTTGCTTCTTT+AGG | - | chr8.1:17045482-17045501 | MS.gene066085:CDS | 30.0% |
| AAACACTTCTTGACCTCTTT+GGG | + | chr8.1:17045293-17045312 | None:intergenic | 35.0% | |
| AAATGAAATCGCAAAAGCTG+TGG | - | chr8.1:17044979-17044998 | MS.gene066085:intron | 35.0% | |
| AATGTTGTAGGGACATCTAA+CGG | + | chr8.1:17045209-17045228 | None:intergenic | 35.0% | |
| ACGAACTATAAGGAAGGAAA+AGG | + | chr8.1:17045354-17045373 | None:intergenic | 35.0% | |
| ATCATAGCATGACTGTCTAT+TGG | + | chr8.1:17045510-17045529 | None:intergenic | 35.0% | |
| ATCTCTTTCACTATTGTGTC+AGG | - | chr8.1:17044568-17044587 | MS.gene066085:intron | 35.0% | |
| ATGTTCTCATTGCAGTGATT+AGG | - | chr8.1:17044912-17044931 | MS.gene066085:intron | 35.0% | |
| CATGGAATGACATGAAGATT+TGG | + | chr8.1:17044445-17044464 | None:intergenic | 35.0% | |
| CGAACTATAAGGAAGGAAAA+GGG | + | chr8.1:17045353-17045372 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.1:17045792-17045811 | MS.gene066085:intron | 35.0% | |
| GAAAATATGGACGAACAAAG+GGG | + | chr8.1:17045667-17045686 | None:intergenic | 35.0% | |
| GATATTTGGCATATAGCACT+CGG | + | chr8.1:17045645-17045664 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.1:17045168-17045187 | MS.gene066085:CDS | 35.0% | |
| GGTAATACATAGATCACACA+AGG | + | chr8.1:17045557-17045576 | None:intergenic | 35.0% | |
| GTACATAAACATGCAACAAG+TGG | - | chr8.1:17044852-17044871 | MS.gene066085:intron | 35.0% | |
| TAAACACTTCTTGACCTCTT+TGG | + | chr8.1:17045294-17045313 | None:intergenic | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.1:17044395-17044414 | None:intergenic | 35.0% | |
| TAGACAGTCATGCTATGATA+TGG | - | chr8.1:17045511-17045530 | MS.gene066085:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.1:17045901-17045920 | MS.gene066085:CDS | 35.0% | |
| TGTATGACGAACTATAAGGA+AGG | + | chr8.1:17045360-17045379 | None:intergenic | 35.0% | |
| TGTTCTCATTGCAGTGATTA+GGG | - | chr8.1:17044913-17044932 | MS.gene066085:intron | 35.0% | |
| TTTCTTGGAAAACGAATTGC+TGG | - | chr8.1:17044325-17044344 | MS.gene066085:CDS | 35.0% | |
| ! | ATTCGTTTTCCAAGAAACCA+TGG | + | chr8.1:17044322-17044341 | None:intergenic | 35.0% |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.1:17045872-17045891 | MS.gene066085:intron | 35.0% |
| ! | GTTTGTTACTGTCTCAAACT+TGG | - | chr8.1:17044407-17044426 | MS.gene066085:CDS | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8.1:17045797-17045816 | MS.gene066085:intron | 35.0% |
| AACACTTCTTGACCTCTTTG+GGG | + | chr8.1:17045292-17045311 | None:intergenic | 40.0% | |
| AAGCGTTCCAAAACTCAACT+TGG | - | chr8.1:17044937-17044956 | MS.gene066085:intron | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.1:17045975-17045994 | None:intergenic | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.1:17044381-17044400 | MS.gene066085:CDS | 40.0% | |
| CTATAAGGAAGGAAAAGGGT+AGG | + | chr8.1:17045349-17045368 | None:intergenic | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.1:17045791-17045810 | MS.gene066085:intron | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.1:17044997-17045016 | MS.gene066085:intron | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.1:17044725-17044744 | MS.gene066085:intron | 40.0% | |
| TTGCAAATTAAGCGAGCTGA+GGG | - | chr8.1:17045764-17045783 | MS.gene066085:intron | 40.0% | |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8.1:17045796-17045815 | MS.gene066085:intron | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.1:17044282-17044301 | MS.gene066085:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.1:17044237-17044256 | MS.gene066085:CDS | 40.0% |
| !! | GCATCATCCAAGTTGAGTTT+TGG | + | chr8.1:17044947-17044966 | None:intergenic | 40.0% |
| ACTCATGAGATAGAGAACCC+TGG | + | chr8.1:17046054-17046073 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.1:17045087-17045106 | MS.gene066085:intron | 45.0% | |
| CAAGAAACCATGGCATGCAA+TGG | + | chr8.1:17044312-17044331 | None:intergenic | 45.0% | |
| CACTCTTCGGCTACAACAAT+TGG | - | chr8.1:17044354-17044373 | MS.gene066085:CDS | 45.0% | |
| CATTGCATGCCATGGTTTCT+TGG | - | chr8.1:17044310-17044329 | MS.gene066085:CDS | 45.0% | |
| CTTGCAAATTAAGCGAGCTG+AGG | - | chr8.1:17045763-17045782 | MS.gene066085:intron | 45.0% | |
| GACGACTGCAAAAGATGTCA+TGG | - | chr8.1:17045895-17045914 | MS.gene066085:CDS | 45.0% | |
| GGACGAACAAAGGGGATATT+TGG | + | chr8.1:17045659-17045678 | None:intergenic | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.1:17046033-17046052 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+CGG | - | chr8.1:17045851-17045870 | MS.gene066085:intron | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | + | chr8.1:17045843-17045862 | None:intergenic | 45.0% | |
| GTGATCAGCTGCAAGATTGA+GGG | - | chr8.1:17045706-17045725 | MS.gene066085:intron | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.1:17046022-17046041 | MS.gene066085:CDS | 45.0% | |
| TAGCACTCGGTAGAGAAACA+TGG | + | chr8.1:17045632-17045651 | None:intergenic | 45.0% | |
| TCTCAAGTGGCTATGAGAGA+AGG | - | chr8.1:17044250-17044269 | MS.gene066085:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.1:17045980-17045999 | MS.gene066085:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | - | chr8.1:17044385-17044404 | MS.gene066085:CDS | 45.0% | |
| TGTGATCAGCTGCAAGATTG+AGG | - | chr8.1:17045705-17045724 | MS.gene066085:intron | 45.0% | |
| TTGCTGGTCATCTCACTCTT+CGG | - | chr8.1:17044341-17044360 | MS.gene066085:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | - | chr8.1:17044256-17044275 | MS.gene066085:CDS | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.1:17046033-17046052 | MS.gene066085:CDS | 45.0% |
| !! | ATCATTAGCCTTGTCTGCCA+AGG | + | chr8.1:17044745-17044764 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.1:17046034-17046053 | MS.gene066085:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.1:17044283-17044302 | MS.gene066085:CDS | 45.0% |
| AATTAAGCGAGCTGAGGGTG+AGG | - | chr8.1:17045769-17045788 | MS.gene066085:intron | 50.0% | |
| AGAGCCAGATCAGCATGTGA+AGG | - | chr8.1:17045143-17045162 | MS.gene066085:CDS | 50.0% | |
| ATCAGCTGCAAGATTGAGGG+TGG | - | chr8.1:17045709-17045728 | MS.gene066085:intron | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.1:17045830-17045849 | MS.gene066085:intron | 50.0% | |
| CATCCACAATGGCTTGACGT+TGG | + | chr8.1:17045832-17045851 | None:intergenic | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.1:17045972-17045991 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.1:17045986-17046005 | MS.gene066085:CDS | 50.0% | |
| ! | ACATCTTTTGCAGTCGTCCC+TGG | + | chr8.1:17045893-17045912 | None:intergenic | 50.0% |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8.1:17044734-17044753 | MS.gene066085:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.1:17044304-17044323 | None:intergenic | 55.0% | |
| GCCAGATCAGCATGTGAAGG+CGG | - | chr8.1:17045146-17045165 | MS.gene066085:CDS | 55.0% | |
| TCGCCAACGTCAAGCCATTG+TGG | - | chr8.1:17045826-17045845 | MS.gene066085:intron | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8.1:17044740-17044759 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.1:17045998-17046017 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.1:17044302-17044321 | MS.gene066085:CDS | 60.0% | |
| GAGGGTGGCAGCGAATGAGA+AGG | - | chr8.1:17045724-17045743 | MS.gene066085:intron | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.1:17046007-17046026 | None:intergenic | 60.0% | |
| GCCGCCTTCACATGCTGATC+TGG | + | chr8.1:17045150-17045169 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 17044214 | 17046075 | 17044214 | ID=MS.gene066085 |
| chr8.1 | mRNA | 17044214 | 17046075 | 17044214 | ID=MS.gene066085.t1;Parent=MS.gene066085 |
| chr8.1 | exon | 17045887 | 17046075 | 17045887 | ID=MS.gene066085.t1.exon1;Parent=MS.gene066085.t1 |
| chr8.1 | CDS | 17045887 | 17046075 | 17045887 | ID=cds.MS.gene066085.t1;Parent=MS.gene066085.t1 |
| chr8.1 | exon | 17045470 | 17045590 | 17045470 | ID=MS.gene066085.t1.exon2;Parent=MS.gene066085.t1 |
| chr8.1 | CDS | 17045470 | 17045590 | 17045470 | ID=cds.MS.gene066085.t1;Parent=MS.gene066085.t1 |
| chr8.1 | exon | 17045271 | 17045362 | 17045271 | ID=MS.gene066085.t1.exon3;Parent=MS.gene066085.t1 |
| chr8.1 | CDS | 17045271 | 17045362 | 17045271 | ID=cds.MS.gene066085.t1;Parent=MS.gene066085.t1 |
| chr8.1 | exon | 17045100 | 17045196 | 17045100 | ID=MS.gene066085.t1.exon4;Parent=MS.gene066085.t1 |
| chr8.1 | CDS | 17045100 | 17045196 | 17045100 | ID=cds.MS.gene066085.t1;Parent=MS.gene066085.t1 |
| chr8.1 | exon | 17044214 | 17044575 | 17044214 | ID=MS.gene066085.t1.exon5;Parent=MS.gene066085.t1 |
| chr8.1 | CDS | 17044214 | 17044575 | 17044214 | ID=cds.MS.gene066085.t1;Parent=MS.gene066085.t1 |
| Gene Sequence |
| Protein sequence |
