Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066086.t1 | RHN63602.1 | 99.6 | 284 | 1 | 0 | 1 | 284 | 6 | 289 | 7.40E-154 | 553.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066086.t1 | Q9FM19 | 89.0 | 282 | 31 | 0 | 1 | 282 | 1 | 282 | 8.0e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066086.t1 | G7JPW1 | 99.6 | 284 | 1 | 0 | 1 | 284 | 1 | 284 | 5.3e-154 | 553.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058603 | MS.gene066086 | 0.801947 | 7.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59292 | MS.gene066086 | PPI |
| MS.gene68929 | MS.gene066086 | PPI |
| MS.gene31416 | MS.gene066086 | PPI |
| MS.gene029948 | MS.gene066086 | PPI |
| MS.gene20481 | MS.gene066086 | PPI |
| MS.gene055768 | MS.gene066086 | PPI |
| MS.gene043467 | MS.gene066086 | PPI |
| MS.gene066086 | MS.gene030984 | PPI |
| MS.gene066086 | MS.gene028857 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066086.t1 | MTR_4g107720 | 99.648 | 284 | 1 | 0 | 1 | 284 | 1 | 284 | 0.0 | 585 |
| MS.gene066086.t1 | MTR_4g107830 | 87.960 | 299 | 21 | 1 | 1 | 284 | 1 | 299 | 0.0 | 537 |
| MS.gene066086.t1 | MTR_4g107810 | 94.406 | 286 | 14 | 1 | 1 | 284 | 1 | 286 | 0.0 | 536 |
| MS.gene066086.t1 | MTR_4g107760 | 94.406 | 286 | 14 | 1 | 1 | 284 | 1 | 286 | 0.0 | 536 |
| MS.gene066086.t1 | MTR_4g107810 | 94.406 | 286 | 14 | 1 | 1 | 284 | 61 | 346 | 0.0 | 536 |
| MS.gene066086.t1 | MTR_4g107730 | 89.161 | 286 | 25 | 2 | 1 | 284 | 1 | 282 | 0.0 | 502 |
| MS.gene066086.t1 | MTR_6g011380 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 2.59e-177 | 490 |
| MS.gene066086.t1 | MTR_8g469160 | 79.787 | 282 | 57 | 0 | 1 | 282 | 1 | 282 | 1.40e-175 | 486 |
| MS.gene066086.t1 | MTR_6g460470 | 56.338 | 284 | 122 | 1 | 1 | 282 | 1 | 284 | 6.92e-115 | 332 |
| MS.gene066086.t1 | MTR_4g107700 | 95.181 | 83 | 4 | 0 | 202 | 284 | 6 | 88 | 3.25e-51 | 163 |
| MS.gene066086.t1 | MTR_6g060500 | 49.231 | 65 | 20 | 1 | 161 | 212 | 1 | 65 | 6.68e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066086.t1 | AT5G62740 | 89.007 | 282 | 31 | 0 | 1 | 282 | 1 | 282 | 0.0 | 530 |
| MS.gene066086.t1 | AT1G69840 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 1.88e-171 | 475 |
| MS.gene066086.t1 | AT1G69840 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 1.88e-171 | 475 |
| MS.gene066086.t1 | AT1G69840 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 1.88e-171 | 475 |
| MS.gene066086.t1 | AT1G69840 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 1.88e-171 | 475 |
| MS.gene066086.t1 | AT1G69840 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 1.88e-171 | 475 |
| MS.gene066086.t1 | AT1G69840 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 1.88e-171 | 475 |
| MS.gene066086.t1 | AT1G69840 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 1.88e-171 | 475 |
| MS.gene066086.t1 | AT3G01290 | 77.739 | 283 | 63 | 0 | 1 | 283 | 1 | 283 | 9.79e-168 | 466 |
| MS.gene066086.t1 | AT5G51570 | 56.338 | 284 | 122 | 1 | 1 | 282 | 1 | 284 | 3.71e-119 | 343 |
Find 76 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTTTGAAAGAAAT+TGG | 0.117209 | 8.1:-17039748 | MS.gene066086:CDS |
| CTATTCTCATTGCAGTAATC+AGG | 0.273861 | 8.1:-17040592 | MS.gene066086:intron |
| GGAGAAGTCCATCGCGAATT+TGG | 0.274844 | 8.1:+17039659 | None:intergenic |
| CCATTGCATGCCATGGTTCC+TGG | 0.324425 | 8.1:-17041196 | MS.gene066086:CDS |
| TTGACACTTTGAAAGAAATT+GGG | 0.334978 | 8.1:-17039747 | MS.gene066086:CDS |
| GCGTCATCCAAGTAGAGTTT+TGG | 0.342771 | 8.1:+17040560 | None:intergenic |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.1:-17040416 | MS.gene066086:intron |
| CTCCCTTCGGCTACAACAAT+TGG | 0.345628 | 8.1:-17041151 | MS.gene066086:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.407086 | 8.1:-17041249 | MS.gene066086:CDS |
| TTCCTGGGAAAACGGATTGC+CGG | 0.420365 | 8.1:-17041180 | MS.gene066086:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.1:-17039838 | MS.gene066086:CDS |
| AATTCGCGATGGACTTCTCC+AGG | 0.436039 | 8.1:-17039656 | MS.gene066086:CDS |
| TGCTAAAGATGTCATGGATA+TGG | 0.438467 | 8.1:-17039788 | MS.gene066086:CDS |
| GCCCGCTTCACATGCTCATC+GGG | 0.440215 | 8.1:+17040356 | None:intergenic |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8.1:-17039898 | MS.gene066086:CDS |
| TGCCATGGTTCCTGGGAAAA+CGG | 0.457814 | 8.1:-17041188 | MS.gene066086:CDS |
| AGCCCGCTTCACATGCTCAT+CGG | 0.481339 | 8.1:+17040355 | None:intergenic |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8.1:-17039971 | MS.gene066086:CDS |
| GCCCGATGAGCATGTGAAGC+GGG | 0.484110 | 8.1:-17040357 | MS.gene066086:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.1:-17040767 | MS.gene066086:CDS |
| CAGTGTTCCAAAACTCTACT+TGG | 0.493504 | 8.1:-17040567 | MS.gene066086:CDS |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8.1:+17041204 | None:intergenic |
| TATCCAATTGTTGTAGCCGA+AGG | 0.512577 | 8.1:+17041148 | None:intergenic |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8.1:-17039893 | MS.gene066086:CDS |
| AATGAACACAGCAGAAGACT+TGG | 0.514024 | 8.1:+17039717 | None:intergenic |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.517543 | 8.1:-17039980 | MS.gene066086:intron |
| CTTGGCAGACAAGGCTAATG+AGG | 0.518494 | 8.1:-17040749 | MS.gene066086:CDS |
| CATTGCATGCCATGGTTCCT+GGG | 0.523914 | 8.1:-17041195 | MS.gene066086:CDS |
| TATTCTCATTGCAGTAATCA+GGG | 0.525164 | 8.1:-17040591 | MS.gene066086:intron |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.1:-17039703 | MS.gene066086:CDS |
| TTTGAAGAAGTGCTTCAGCC+AGG | 0.529505 | 8.1:-17041222 | MS.gene066086:CDS |
| ACAGTAACAAACCTTTGTCT+TGG | 0.530913 | 8.1:+17041113 | None:intergenic |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.1:-17039859 | MS.gene066086:CDS |
| ATGAACACAGCAGAAGACTT+GGG | 0.535784 | 8.1:+17039718 | None:intergenic |
| ACATCTTTAGCACTTGTCCC+TGG | 0.540845 | 8.1:+17039799 | None:intergenic |
| TAGCCGAAGGGAGAGATGAC+CGG | 0.541932 | 8.1:+17041161 | None:intergenic |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8.1:-17039892 | MS.gene066086:CDS |
| GACAAGTGCTAAAGATGTCA+TGG | 0.545051 | 8.1:-17039794 | MS.gene066086:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.1:-17039920 | MS.gene066086:CDS |
| TGACACTTTGAAAGAAATTG+GGG | 0.551717 | 8.1:-17039746 | MS.gene066086:CDS |
| CTCATTAGCCTTGTCTGCCA+AGG | 0.555637 | 8.1:+17040750 | None:intergenic |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.1:+17039685 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.1:-17039709 | MS.gene066086:CDS |
| TTGCCGGTCATCTCTCCCTT+CGG | 0.567067 | 8.1:-17041164 | MS.gene066086:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8.1:-17039897 | MS.gene066086:CDS |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8.1:-17041203 | MS.gene066086:CDS |
| GAAGCTACTGATGAGAACCC+TGG | 0.574524 | 8.1:+17039638 | None:intergenic |
| ATCCAATTGTTGTAGCCGAA+GGG | 0.579325 | 8.1:+17041149 | None:intergenic |
| CCAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.1:+17041196 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.585634 | 8.1:-17040335 | MS.gene066086:intron |
| GTTGGCAGCTAAGGAGAAAG+CGG | 0.586849 | 8.1:-17039962 | MS.gene066086:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.1:-17040758 | MS.gene066086:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.1:+17039909 | None:intergenic |
| TTTGATCAGCTGCAAGAATG+AGG | 0.600186 | 8.1:-17039984 | MS.gene066086:intron |
| TGAACACAGCAGAAGACTTG+GGG | 0.603200 | 8.1:+17039719 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.1:-17040525 | MS.gene066086:CDS |
| TCTACAGTGGCTATGAGAGA+AGG | 0.612018 | 8.1:-17041255 | MS.gene066086:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.621419 | 8.1:-17040507 | MS.gene066086:intron |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.1:-17040721 | MS.gene066086:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.1:+17040755 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.1:-17040723 | MS.gene066086:CDS |
| GGCAGCTAAGGAGAAAGCGG+AGG | 0.632411 | 8.1:-17039959 | MS.gene066086:CDS |
| AGCCCGATGAGCATGTGAAG+CGG | 0.638188 | 8.1:-17040358 | MS.gene066086:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.1:-17039926 | MS.gene066086:CDS |
| TCGCCAACGTCAAGCCATTG+TGG | 0.640251 | 8.1:-17039863 | MS.gene066086:CDS |
| GTTGCTAGCCAAATTCGCGA+TGG | 0.641354 | 8.1:-17039667 | MS.gene066086:CDS |
| CATCCACAATGGCTTGACGT+TGG | 0.649829 | 8.1:+17039860 | None:intergenic |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.1:-17039925 | MS.gene066086:CDS |
| ATTCGCGATGGACTTCTCCA+GGG | 0.652495 | 8.1:-17039655 | MS.gene066086:CDS |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8.1:+17039849 | None:intergenic |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8.1:-17041124 | MS.gene066086:intron |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.1:+17039694 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.1:-17040722 | MS.gene066086:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.697140 | 8.1:+17039764 | None:intergenic |
| GCAAGTTGATCAATCTACAG+TGG | 0.699512 | 8.1:-17041268 | MS.gene066086:CDS |
| GAACACAGCAGAAGACTTGG+GGG | 0.700455 | 8.1:+17039720 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACGAATATTATTTATTGATA+TGG | - | chr8.1:17040461-17040480 | MS.gene066086:intron | 15.0% |
| !! | GGAAATAAAATTAATTACAA+AGG | + | chr8.1:17040695-17040714 | None:intergenic | 15.0% |
| !!! | ATTAATTTTATTTCCAAAAG+AGG | - | chr8.1:17040700-17040719 | MS.gene066086:CDS | 15.0% |
| !! | AATACTTAATAATAAGAACC+TGG | + | chr8.1:17040803-17040822 | None:intergenic | 20.0% |
| !! | ATAGATAAACATGTAATAAG+TGG | - | chr8.1:17040286-17040305 | MS.gene066086:intron | 20.0% |
| !! | TATGTATGTTATAGACTTAT+TGG | + | chr8.1:17039890-17039909 | None:intergenic | 20.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | + | chr8.1:17040238-17040257 | None:intergenic | 25.0% |
| ! | CATATAAAAACAATGTTGTG+AGG | + | chr8.1:17040649-17040668 | None:intergenic | 25.0% |
| ! | CCATAGTTAAGAAAACATAT+AGG | + | chr8.1:17039982-17040001 | None:intergenic | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | + | chr8.1:17040925-17040944 | None:intergenic | 25.0% |
| ! | TAACTTTGAATAATCTCAAC+AGG | - | chr8.1:17040501-17040520 | MS.gene066086:intron | 25.0% |
| ! | TTTACTATTTATTTGCTTGC+AGG | - | chr8.1:17040118-17040137 | MS.gene066086:intron | 25.0% |
| ! | TTTATTGATATGGTGAATTG+TGG | - | chr8.1:17040471-17040490 | MS.gene066086:intron | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | - | chr8.1:17040918-17040937 | MS.gene066086:intron | 25.0% |
| !! | CCTATATGTTTTCTTAACTA+TGG | - | chr8.1:17039979-17039998 | MS.gene066086:intron | 25.0% |
| !! | TAACATACATAACTTCGTTT+TGG | - | chr8.1:17039899-17039918 | MS.gene066086:CDS | 25.0% |
| !! | TTGACACTTTGAAAGAAATT+GGG | - | chr8.1:17041186-17041205 | MS.gene066086:CDS | 25.0% |
| !! | TTTGACACTTTGAAAGAAAT+TGG | - | chr8.1:17041185-17041204 | MS.gene066086:CDS | 25.0% |
| !! | TTTTAAACACTTACCTCTTT+TGG | + | chr8.1:17040716-17040735 | None:intergenic | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.1:17040239-17040258 | MS.gene066086:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.1:17040408-17040427 | MS.gene066086:CDS | 30.0% | |
| AATCAAAATAACATAGCTCC+TGG | + | chr8.1:17039959-17039978 | None:intergenic | 30.0% | |
| ATAAGAAAATATGGCAATCC+AGG | + | chr8.1:17040916-17040935 | None:intergenic | 30.0% | |
| ATGGTTATCTCTTTCGTTAT+TGG | - | chr8.1:17039998-17040017 | MS.gene066086:intron | 30.0% | |
| ATGTTTATCTATTGCTAAGC+AGG | + | chr8.1:17040278-17040297 | None:intergenic | 30.0% | |
| GAAACATCGTAAATGATACA+AGG | + | chr8.1:17040857-17040876 | None:intergenic | 30.0% | |
| TATAGACTTATTGGTATGCA+TGG | + | chr8.1:17039881-17039900 | None:intergenic | 30.0% | |
| TATTCTCATTGCAGTAATCA+GGG | - | chr8.1:17040342-17040361 | MS.gene066086:CDS | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8.1:17040211-17040230 | MS.gene066086:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.1:17040210-17040229 | MS.gene066086:intron | 30.0% | |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.1:17041117-17041136 | MS.gene066086:intron | 30.0% |
| ! | TGACACTTTGAAAGAAATTG+GGG | - | chr8.1:17041187-17041206 | MS.gene066086:CDS | 30.0% |
| AAAATGTGAGACCAAGACAA+AGG | - | chr8.1:17039809-17039828 | MS.gene066086:CDS | 35.0% | |
| ACAGTAACAAACCTTTGTCT+TGG | + | chr8.1:17039823-17039842 | None:intergenic | 35.0% | |
| ATGATGTACCAAGAGGAAAA+GGG | + | chr8.1:17040743-17040762 | None:intergenic | 35.0% | |
| ATTTATATTAGGCGTCATCC+AGG | - | chr8.1:17039938-17039957 | MS.gene066086:CDS | 35.0% | |
| CCAAATATCTACTTTGTTCC+TGG | - | chr8.1:17040895-17040914 | MS.gene066086:intron | 35.0% | |
| CCAGGAACAAAGTAGATATT+TGG | + | chr8.1:17040898-17040917 | None:intergenic | 35.0% | |
| CTATTCTCATTGCAGTAATC+AGG | - | chr8.1:17040341-17040360 | MS.gene066086:CDS | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.1:17041036-17041055 | MS.gene066086:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.1:17040598-17040617 | MS.gene066086:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8.1:17040212-17040231 | MS.gene066086:intron | 35.0% | |
| TATGATGTACCAAGAGGAAA+AGG | + | chr8.1:17040744-17040763 | None:intergenic | 35.0% | |
| TCGATTGAATTCATGCTGAT+TGG | - | chr8.1:17040094-17040113 | MS.gene066086:intron | 35.0% | |
| TCTATTGCTAAGCAGGTTTA+TGG | + | chr8.1:17040271-17040290 | None:intergenic | 35.0% | |
| TCTCTTTCGTTATTGGTATC+AGG | - | chr8.1:17040005-17040024 | MS.gene066086:intron | 35.0% | |
| TGCTAAAGATGTCATGGATA+TGG | - | chr8.1:17041145-17041164 | MS.gene066086:CDS | 35.0% | |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.1:17041116-17041135 | MS.gene066086:intron | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8.1:17041041-17041060 | MS.gene066086:intron | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.1:17041172-17041191 | None:intergenic | 35.0% |
| !!! | TACATAACTTCGTTTTGGCT+AGG | - | chr8.1:17039904-17039923 | MS.gene066086:CDS | 35.0% |
| AAGGGATACGTGTAATATCC+AGG | - | chr8.1:17040782-17040801 | MS.gene066086:CDS | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.1:17041219-17041238 | None:intergenic | 40.0% | |
| AATGTTGTGAGGACATCTCA+CGG | + | chr8.1:17040638-17040657 | None:intergenic | 40.0% | |
| ACATGCATGGACAACTATGA+AGG | - | chr8.1:17040763-17040782 | MS.gene066086:CDS | 40.0% | |
| ATCCAATTGTTGTAGCCGAA+GGG | + | chr8.1:17039787-17039806 | None:intergenic | 40.0% | |
| ATGAACACAGCAGAAGACTT+GGG | + | chr8.1:17041218-17041237 | None:intergenic | 40.0% | |
| CAGTGTTCCAAAACTCTACT+TGG | - | chr8.1:17040366-17040385 | MS.gene066086:CDS | 40.0% | |
| CATGCATGGACAACTATGAA+GGG | - | chr8.1:17040764-17040783 | MS.gene066086:CDS | 40.0% | |
| CATGGAATGACATGATGGTT+TGG | + | chr8.1:17039863-17039882 | None:intergenic | 40.0% | |
| CTTGGTACATCATACATGCA+TGG | - | chr8.1:17040750-17040769 | MS.gene066086:CDS | 40.0% | |
| GACAAGTGCTAAAGATGTCA+TGG | - | chr8.1:17041139-17041158 | MS.gene066086:CDS | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.1:17041035-17041054 | MS.gene066086:intron | 40.0% | |
| GTATGCATGGAATGACATGA+TGG | + | chr8.1:17039868-17039887 | None:intergenic | 40.0% | |
| TATCCAATTGTTGTAGCCGA+AGG | + | chr8.1:17039788-17039807 | None:intergenic | 40.0% | |
| TGCATGTATGATGTACCAAG+AGG | + | chr8.1:17040750-17040769 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.1:17040426-17040445 | MS.gene066086:intron | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.1:17040166-17040185 | MS.gene066086:intron | 40.0% | |
| TTTGATCAGCTGCAAGAATG+AGG | - | chr8.1:17040949-17040968 | MS.gene066086:intron | 40.0% | |
| ! | AAAACCTACCCTTTTCCTCT+TGG | - | chr8.1:17040732-17040751 | MS.gene066086:CDS | 40.0% |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8.1:17041040-17041059 | MS.gene066086:intron | 40.0% |
| !! | GCAAGTTGATCAATCTACAG+TGG | - | chr8.1:17039665-17039684 | MS.gene066086:CDS | 40.0% |
| !!! | CAAGTAGAGTTTTGGAACAC+TGG | + | chr8.1:17040368-17040387 | None:intergenic | 40.0% |
| AAGAATGAGGTTGGCAGCTA+AGG | - | chr8.1:17040962-17040981 | MS.gene066086:intron | 45.0% | |
| ACATCTTTAGCACTTGTCCC+TGG | + | chr8.1:17041137-17041156 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | - | chr8.1:17040953-17040972 | MS.gene066086:intron | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.1:17040517-17040536 | MS.gene066086:CDS | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8.1:17041095-17041114 | MS.gene066086:intron | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | + | chr8.1:17041087-17041106 | None:intergenic | 45.0% | |
| TCTACAGTGGCTATGAGAGA+AGG | - | chr8.1:17039678-17039697 | MS.gene066086:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.1:17041224-17041243 | MS.gene066086:CDS | 45.0% | |
| TGAACACAGCAGAAGACTTG+GGG | + | chr8.1:17041217-17041236 | None:intergenic | 45.0% | |
| TGTACCAAGAGGAAAAGGGT+AGG | + | chr8.1:17040739-17040758 | None:intergenic | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.1:17041008-17041027 | MS.gene066086:intron | 45.0% | |
| ! | GCGTCATCCAAGTAGAGTTT+TGG | + | chr8.1:17040376-17040395 | None:intergenic | 45.0% |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | - | chr8.1:17039684-17039703 | MS.gene066086:CDS | 45.0% |
| !! | TTTGAAGAAGTGCTTCAGCC+AGG | - | chr8.1:17039711-17039730 | MS.gene066086:CDS | 45.0% |
| !!! | ATTTTATTTTCATTTATATT+AGG | - | chr8.1:17039927-17039946 | MS.gene066086:CDS | 5.0% |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.1:17041074-17041093 | MS.gene066086:intron | 50.0% | |
| CATCCACAATGGCTTGACGT+TGG | + | chr8.1:17041076-17041095 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+GGG | - | chr8.1:17039738-17039757 | MS.gene066086:CDS | 50.0% | |
| CTCCCTTCGGCTACAACAAT+TGG | - | chr8.1:17039782-17039801 | MS.gene066086:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.1:17041007-17041026 | MS.gene066086:intron | 50.0% | |
| CTTGGCAGACAAGGCTAATG+AGG | - | chr8.1:17040184-17040203 | MS.gene066086:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+GGG | + | chr8.1:17041216-17041235 | None:intergenic | 50.0% | |
| GGAGAAGTCCATCGCGAATT+TGG | + | chr8.1:17041277-17041296 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.1:17041230-17041249 | MS.gene066086:CDS | 50.0% | |
| GTTGCTAGCCAAATTCGCGA+TGG | - | chr8.1:17041266-17041285 | MS.gene066086:CDS | 50.0% | |
| GTTGGCAGCTAAGGAGAAAG+CGG | - | chr8.1:17040971-17040990 | MS.gene066086:intron | 50.0% | |
| TGCCATGGTTCCTGGGAAAA+CGG | - | chr8.1:17039745-17039764 | MS.gene066086:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.1:17041027-17041046 | None:intergenic | 50.0% | |
| ! | AATTCGCGATGGACTTCTCC+AGG | - | chr8.1:17041277-17041296 | MS.gene066086:CDS | 50.0% |
| ! | ATCCGTTTTCCCAGGAACCA+TGG | + | chr8.1:17039750-17039769 | None:intergenic | 50.0% |
| ! | ATTCGCGATGGACTTCTCCA+GGG | - | chr8.1:17041278-17041297 | MS.gene066086:CDS | 50.0% |
| !! | CTCATTAGCCTTGTCTGCCA+AGG | + | chr8.1:17040186-17040205 | None:intergenic | 50.0% |
| !! | TTCCTGGGAAAACGGATTGC+CGG | - | chr8.1:17039753-17039772 | MS.gene066086:CDS | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.1:17041013-17041032 | MS.gene066086:intron | 55.0% | |
| AGCCCGATGAGCATGTGAAG+CGG | - | chr8.1:17040575-17040594 | MS.gene066086:CDS | 55.0% | |
| AGCCCGCTTCACATGCTCAT+CGG | + | chr8.1:17040581-17040600 | None:intergenic | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8.1:17040175-17040194 | MS.gene066086:intron | 55.0% | |
| CAGGATGCCATTGCATGCCA+TGG | - | chr8.1:17039730-17039749 | MS.gene066086:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+TGG | + | chr8.1:17039732-17039751 | None:intergenic | 55.0% | |
| CCAGGAACCATGGCATGCAA+TGG | + | chr8.1:17039740-17039759 | None:intergenic | 55.0% | |
| CCATTGCATGCCATGGTTCC+TGG | - | chr8.1:17039737-17039756 | MS.gene066086:CDS | 55.0% | |
| TAGCCGAAGGGAGAGATGAC+CGG | + | chr8.1:17039775-17039794 | None:intergenic | 55.0% | |
| TCGCCAACGTCAAGCCATTG+TGG | - | chr8.1:17041070-17041089 | MS.gene066086:intron | 55.0% | |
| TTGCCGGTCATCTCTCCCTT+CGG | - | chr8.1:17039769-17039788 | MS.gene066086:CDS | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8.1:17040181-17040200 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.1:17041242-17041261 | None:intergenic | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.1:17041251-17041270 | None:intergenic | 60.0% | |
| GCCCGATGAGCATGTGAAGC+GGG | - | chr8.1:17040576-17040595 | MS.gene066086:CDS | 60.0% | |
| GCCCGCTTCACATGCTCATC+GGG | + | chr8.1:17040580-17040599 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAAGCGG+AGG | - | chr8.1:17040974-17040993 | MS.gene066086:intron | 60.0% | |
| ! | GACCGGCAATCCGTTTTCCC+AGG | + | chr8.1:17039758-17039777 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 17039642 | 17041313 | 17039642 | ID=MS.gene066086 |
| chr8.1 | mRNA | 17039642 | 17041313 | 17039642 | ID=MS.gene066086.t1;Parent=MS.gene066086 |
| chr8.1 | exon | 17041125 | 17041313 | 17041125 | ID=MS.gene066086.t1.exon1;Parent=MS.gene066086.t1 |
| chr8.1 | CDS | 17041125 | 17041313 | 17041125 | ID=cds.MS.gene066086.t1;Parent=MS.gene066086.t1 |
| chr8.1 | exon | 17040695 | 17040815 | 17040695 | ID=MS.gene066086.t1.exon2;Parent=MS.gene066086.t1 |
| chr8.1 | CDS | 17040695 | 17040815 | 17040695 | ID=cds.MS.gene066086.t1;Parent=MS.gene066086.t1 |
| chr8.1 | exon | 17040508 | 17040599 | 17040508 | ID=MS.gene066086.t1.exon3;Parent=MS.gene066086.t1 |
| chr8.1 | CDS | 17040508 | 17040599 | 17040508 | ID=cds.MS.gene066086.t1;Parent=MS.gene066086.t1 |
| chr8.1 | exon | 17040336 | 17040432 | 17040336 | ID=MS.gene066086.t1.exon4;Parent=MS.gene066086.t1 |
| chr8.1 | CDS | 17040336 | 17040432 | 17040336 | ID=cds.MS.gene066086.t1;Parent=MS.gene066086.t1 |
| chr8.1 | exon | 17039642 | 17039997 | 17039642 | ID=MS.gene066086.t1.exon5;Parent=MS.gene066086.t1 |
| chr8.1 | CDS | 17039642 | 17039997 | 17039642 | ID=cds.MS.gene066086.t1;Parent=MS.gene066086.t1 |
| Gene Sequence |
| Protein sequence |
