Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066093.t1 | XP_003608997.2 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 6.50E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066093.t1 | Q5GI04 | 87.4 | 285 | 36 | 0 | 1 | 285 | 1 | 285 | 8.0e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066093.t1 | G7JPW8 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 4.7e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058043 | MS.gene066093 | 0.94487 | 8.80E-104 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066093 | MS.gene029948 | PPI |
| MS.gene066093 | MS.gene030984 | PPI |
| MS.gene20481 | MS.gene066093 | PPI |
| MS.gene066093 | MS.gene028857 | PPI |
| MS.gene043467 | MS.gene066093 | PPI |
| MS.gene066093 | MS.gene055768 | PPI |
| MS.gene68929 | MS.gene066093 | PPI |
| MS.gene066093 | MS.gene59292 | PPI |
| MS.gene31416 | MS.gene066093 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066093.t1 | MTR_4g107830 | 92.256 | 297 | 8 | 1 | 1 | 282 | 1 | 297 | 0.0 | 557 |
| MS.gene066093.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene066093.t1 | MTR_4g107760 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene066093.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 61 | 346 | 0.0 | 552 |
| MS.gene066093.t1 | MTR_4g107720 | 94.326 | 282 | 16 | 0 | 1 | 282 | 1 | 282 | 0.0 | 536 |
| MS.gene066093.t1 | MTR_6g011380 | 83.688 | 282 | 46 | 0 | 1 | 282 | 1 | 282 | 7.37e-180 | 497 |
| MS.gene066093.t1 | MTR_8g469160 | 79.859 | 283 | 57 | 0 | 1 | 283 | 1 | 283 | 2.90e-177 | 490 |
| MS.gene066093.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 3.22e-177 | 490 |
| MS.gene066093.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 8.19e-117 | 337 |
| MS.gene066093.t1 | MTR_4g107700 | 96.296 | 81 | 3 | 0 | 202 | 282 | 6 | 86 | 1.26e-49 | 159 |
| MS.gene066093.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 4 | 19 | 199 | 71 | 249 | 2.62e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066093.t1 | AT5G62740 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 530 |
| MS.gene066093.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066093.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066093.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066093.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066093.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066093.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066093.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene066093.t1 | AT3G01290 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 5.75e-170 | 472 |
| MS.gene066093.t1 | AT5G51570 | 57.042 | 284 | 120 | 1 | 1 | 282 | 1 | 284 | 7.71e-122 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.142368 | 8.4:-19370829 | MS.gene066093:CDS |
| ATGTTCTCATTGCAGTAATT+AGG | 0.205184 | 8.4:-19371851 | MS.gene066093:intron |
| GCCTTCTTCACATGCTTATC+TGG | 0.244299 | 8.4:+19371615 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.4:+19370740 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.4:+19371819 | None:intergenic |
| CTCTCTTCGGGTTCAACAAT+TGG | 0.301031 | 8.4:-19372389 | MS.gene066093:CDS |
| TGTTCTCATTGCAGTAATTA+GGG | 0.306159 | 8.4:-19371850 | MS.gene066093:intron |
| TGCTGGTCATCTCTCTCTTC+GGG | 0.329796 | 8.4:-19372401 | MS.gene066093:CDS |
| TTGACACTATGAAAGAAATT+GGG | 0.344707 | 8.4:-19370828 | MS.gene066093:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.4:-19371675 | MS.gene066093:intron |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.350694 | 8.4:-19372402 | MS.gene066093:CDS |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.4:-19372487 | MS.gene066093:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.4:-19372418 | MS.gene066093:CDS |
| GGATTGAGAGACAGTGTGAT+TGG | 0.394088 | 8.4:-19370919 | MS.gene066093:CDS |
| GCCAGATAAGCATGTGAAGA+AGG | 0.431501 | 8.4:-19371616 | MS.gene066093:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.4:-19370737 | MS.gene066093:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.437735 | 8.4:-19370869 | MS.gene066093:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.4:-19372461 | MS.gene066093:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.4:-19372433 | MS.gene066093:CDS |
| GTCTAAATATCTCGCTGGGA+TGG | 0.480437 | 8.4:-19370974 | MS.gene066093:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.481733 | 8.4:-19372022 | MS.gene066093:CDS |
| ATCGTTTGCCTTGTTTGCCA+AGG | 0.508315 | 8.4:+19372005 | None:intergenic |
| TAACAAACCAACCTTTGTCT+TGG | 0.511154 | 8.4:+19372351 | None:intergenic |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.4:-19372493 | MS.gene066093:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.4:-19372460 | MS.gene066093:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.4:+19372442 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.4:+19370798 | None:intergenic |
| TCTAAATATCTCGCTGGGAT+GGG | 0.525100 | 8.4:-19370973 | MS.gene066093:CDS |
| TTGCCTTGTTTGCCAAGGCA+CGG | 0.526106 | 8.4:+19372010 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.4:-19370784 | MS.gene066093:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.529578 | 8.4:-19370940 | MS.gene066093:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.4:-19372441 | MS.gene066093:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.4:-19371001 | MS.gene066093:CDS |
| GCTGAGTCTAAATATCTCGC+TGG | 0.552574 | 8.4:-19370979 | MS.gene066093:CDS |
| GACAAGTGCAAAAGATGTCA+TGG | 0.553387 | 8.4:-19370875 | MS.gene066093:CDS |
| CAGTGTTCCAAAACTCAACT+TGG | 0.553554 | 8.4:-19371826 | MS.gene066093:CDS |
| TATGATTAGCTGCAAGAATG+AGG | 0.556005 | 8.4:-19371065 | MS.gene066093:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.4:+19370766 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.558940 | 8.4:-19371594 | MS.gene066093:intron |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.4:-19370790 | MS.gene066093:CDS |
| ATACCGTGCCTTGGCAAACA+AGG | 0.570829 | 8.4:-19372013 | MS.gene066093:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.4:+19370801 | None:intergenic |
| TGACACTATGAAAGAAATTG+GGG | 0.579718 | 8.4:-19370827 | MS.gene066093:CDS |
| CTGAGTCTAAATATCTCGCT+GGG | 0.580679 | 8.4:-19370978 | MS.gene066093:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.4:+19372434 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.4:+19370990 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.4:-19371784 | MS.gene066093:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.4:-19371766 | MS.gene066093:intron |
| ACTCATGAGTTAGAGAACCC+TGG | 0.616759 | 8.4:+19370719 | None:intergenic |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.4:-19372506 | MS.gene066093:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.4:-19370748 | MS.gene066093:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.4:-19371976 | MS.gene066093:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.4:-19371978 | MS.gene066093:CDS |
| GAGGATCGCAGCTAATGAGA+AGG | 0.632818 | 8.4:-19371046 | MS.gene066093:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.4:-19370736 | MS.gene066093:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.4:-19371007 | MS.gene066093:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.4:-19370944 | MS.gene066093:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.4:-19372362 | MS.gene066093:intron |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.4:-19371006 | MS.gene066093:CDS |
| GTCTCTCAATCCATCCACAA+TGG | 0.662038 | 8.4:+19370930 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.4:+19370775 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.4:-19371977 | MS.gene066093:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.4:+19370845 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATAACAATATTGT+GGG | + | chr8.4:19371705-19371724 | None:intergenic | 10.0% |
| !! | TAAATATAATAACAATATTG+TGG | + | chr8.4:19371706-19371725 | None:intergenic | 10.0% |
| !! | TAATAAAATTAAAATTATCC+CGG | + | chr8.4:19370996-19371015 | None:intergenic | 10.0% |
| !! | TTATTTATATGAATTAAACT+TGG | - | chr8.4:19371723-19371742 | MS.gene066093:intron | 10.0% |
| !! | AATATAATAACAATATTGTG+GGG | + | chr8.4:19371704-19371723 | None:intergenic | 15.0% |
| !! | TTTAATATTTATTTGCTTGT+AGG | - | chr8.4:19371176-19371195 | MS.gene066093:intron | 15.0% |
| !!! | GGGATAATTTTAATTTTATT+AGG | - | chr8.4:19370995-19371014 | MS.gene066093:CDS | 15.0% |
| !!! | TTTATTTTATTCTCTAAAAG+AGG | - | chr8.4:19371768-19371787 | MS.gene066093:CDS | 15.0% |
| !! | AAAAATTTGAGAACAATGTA+CGG | + | chr8.4:19371134-19371153 | None:intergenic | 20.0% |
| !! | ACAATTAGTATTTACAGATA+AGG | - | chr8.4:19371515-19371534 | MS.gene066093:intron | 20.0% |
| !! | ATGTAACAAAAAACTATGTA+GGG | - | chr8.4:19371840-19371859 | MS.gene066093:intron | 20.0% |
| !! | CCATAGTTAAGAAAATATAT+AGG | + | chr8.4:19371050-19371069 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGGAATTAACTC+CGG | - | chr8.4:19371923-19371942 | MS.gene066093:intron | 20.0% |
| !!! | CCTATATATTTTCTTAACTA+TGG | - | chr8.4:19371047-19371066 | MS.gene066093:CDS | 20.0% |
| !!! | TTTTGCTGCAAAATTTATTT+TGG | - | chr8.4:19371911-19371930 | MS.gene066093:intron | 20.0% |
| ! | AATCAAAATAACATAGCACA+AGG | + | chr8.4:19371027-19371046 | None:intergenic | 25.0% |
| ! | CATGTAACAAAAAACTATGT+AGG | - | chr8.4:19371839-19371858 | MS.gene066093:CDS | 25.0% |
| ! | GGAAACAGTATATGAAAATA+TGG | + | chr8.4:19372157-19372176 | None:intergenic | 25.0% |
| ! | TTGACACTATGAAAGAAATT+GGG | - | chr8.4:19372418-19372437 | MS.gene066093:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.4:19372417-19372436 | MS.gene066093:CDS | 25.0% |
| !! | ATTGTTCTCAAATTTTTCCA+TGG | - | chr8.4:19371137-19371156 | MS.gene066093:intron | 25.0% |
| !! | TTGTTCTCAAATTTTTCCAT+GGG | - | chr8.4:19371138-19371157 | MS.gene066093:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.4:19370773-19370792 | MS.gene066093:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.4:19371297-19371316 | MS.gene066093:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.4:19371462-19371481 | MS.gene066093:intron | 30.0% | |
| ACAAATCAACATTTATCCCA+TGG | + | chr8.4:19371157-19371176 | None:intergenic | 30.0% | |
| AGCAATAAACATGCAATTAC+TGG | - | chr8.4:19371340-19371359 | MS.gene066093:intron | 30.0% | |
| ATCATAGCATAACCAACTAT+TGG | + | chr8.4:19371970-19371989 | None:intergenic | 30.0% | |
| ATGTTCTCATTGCAGTAATT+AGG | - | chr8.4:19371395-19371414 | MS.gene066093:intron | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | + | chr8.4:19371296-19371315 | None:intergenic | 30.0% | |
| TAGTTGGTTATGCTATGATA+TGG | - | chr8.4:19371971-19371990 | MS.gene066093:CDS | 30.0% | |
| TGACACTATGAAAGAAATTG+GGG | - | chr8.4:19372419-19372438 | MS.gene066093:CDS | 30.0% | |
| TGTTCTCATTGCAGTAATTA+GGG | - | chr8.4:19371396-19371415 | MS.gene066093:intron | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8.4:19371269-19371288 | MS.gene066093:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.4:19371268-19371287 | MS.gene066093:intron | 30.0% | |
| TTTGTTACATGTAAGACGTA+CGG | + | chr8.4:19371830-19371849 | None:intergenic | 30.0% | |
| ! | AATTTTGCAGCAAAAGACTT+AGG | + | chr8.4:19371906-19371925 | None:intergenic | 30.0% |
| ATATGGTAATCCAAGAGCAA+AGG | + | chr8.4:19372140-19372159 | None:intergenic | 35.0% | |
| ATCCATGTGATTGATAAGCA+TGG | + | chr8.4:19370960-19370979 | None:intergenic | 35.0% | |
| CCAAATATATCCTTTGCTCT+TGG | - | chr8.4:19372127-19372146 | MS.gene066093:intron | 35.0% | |
| CCAAGAGCAAAGGATATATT+TGG | + | chr8.4:19372130-19372149 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.4:19371652-19371671 | MS.gene066093:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.4:19370898-19370917 | None:intergenic | 35.0% | |
| TAACTTTGAATCGTCTCAAC+AGG | - | chr8.4:19371555-19371574 | MS.gene066093:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8.4:19371270-19371289 | MS.gene066093:intron | 35.0% | |
| TATATTTGGCACATAGCACT+CGG | + | chr8.4:19372116-19372135 | None:intergenic | 35.0% | |
| TCACATGGATACTTTCTCTT+TGG | - | chr8.4:19370970-19370989 | MS.gene066093:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.4:19372377-19372396 | MS.gene066093:CDS | 35.0% | |
| TGCATGTTTATTGCTAAGCA+GGG | + | chr8.4:19371335-19371354 | None:intergenic | 35.0% | |
| TGTGATTGATAAGCATGGAA+TGG | + | chr8.4:19370955-19370974 | None:intergenic | 35.0% | |
| TTCCATGCTTATCAATCACA+TGG | - | chr8.4:19370955-19370974 | MS.gene066093:CDS | 35.0% | |
| TTGCATGTTTATTGCTAAGC+AGG | + | chr8.4:19371336-19371355 | None:intergenic | 35.0% | |
| TTTACAGATAAGGTGAACTG+AGG | - | chr8.4:19371525-19371544 | MS.gene066093:intron | 35.0% | |
| ! | GATTTTCAGAGAATGTACCA+GGG | - | chr8.4:19372349-19372368 | MS.gene066093:intron | 35.0% |
| ! | TATGATTAGCTGCAAGAATG+AGG | - | chr8.4:19372181-19372200 | MS.gene066093:intron | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | + | chr8.4:19371430-19371449 | None:intergenic | 35.0% |
| !! | TATACACAGAGTACTGAAAG+TGG | + | chr8.4:19371095-19371114 | None:intergenic | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.4:19372404-19372423 | None:intergenic | 35.0% |
| !!! | TTTTGGAATTAACTCCGGTT+TGG | - | chr8.4:19371928-19371947 | MS.gene066093:intron | 35.0% |
| AAGACGTACGGTAAGGAAAA+AGG | + | chr8.4:19371818-19371837 | None:intergenic | 40.0% | |
| AAGACTTAGGATCAGATGCT+TGG | + | chr8.4:19371893-19371912 | None:intergenic | 40.0% | |
| AATATTGTGGGGACATCTCA+TGG | + | chr8.4:19371693-19371712 | None:intergenic | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.4:19372451-19372470 | None:intergenic | 40.0% | |
| ATGGATACTTTCTCTTTGGC+CGG | - | chr8.4:19370974-19370993 | MS.gene066093:CDS | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.4:19370884-19370903 | MS.gene066093:CDS | 40.0% | |
| CAGTGTTCCAAAACTCAACT+TGG | - | chr8.4:19371420-19371439 | MS.gene066093:intron | 40.0% | |
| CATGGAATGGCATGAAGATT+TGG | + | chr8.4:19370942-19370961 | None:intergenic | 40.0% | |
| CTCAAAGAAGCAAACCAAAC+CGG | + | chr8.4:19371945-19371964 | None:intergenic | 40.0% | |
| CTGAGTCTAAATATCTCGCT+GGG | - | chr8.4:19372268-19372287 | MS.gene066093:intron | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | - | chr8.4:19372371-19372390 | MS.gene066093:CDS | 40.0% | |
| TACATGTAAGACGTACGGTA+AGG | + | chr8.4:19371825-19371844 | None:intergenic | 40.0% | |
| TCTAAATATCTCGCTGGGAT+GGG | - | chr8.4:19372273-19372292 | MS.gene066093:intron | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | - | chr8.4:19370753-19370772 | MS.gene066093:CDS | 40.0% | |
| TCTTGCAGCTAATCATAGAC+AGG | + | chr8.4:19372178-19372197 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.4:19371480-19371499 | MS.gene066093:intron | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.4:19370828-19370847 | MS.gene066093:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.4:19371224-19371243 | MS.gene066093:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.4:19370825-19370844 | None:intergenic | 40.0% |
| ! | GGATTTTCAGAGAATGTACC+AGG | - | chr8.4:19372348-19372367 | MS.gene066093:intron | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.4:19370759-19370778 | MS.gene066093:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.4:19370785-19370804 | MS.gene066093:CDS | 40.0% |
| !! | CTTCTTTGAGGTCCAATAGT+TGG | - | chr8.4:19371955-19371974 | MS.gene066093:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.4:19370740-19370759 | MS.gene066093:CDS | 40.0% |
| !!! | CAAGTTGAGTTTTGGAACAC+TGG | + | chr8.4:19371422-19371441 | None:intergenic | 40.0% |
| ACTCATGAGTTAGAGAACCC+TGG | + | chr8.4:19372530-19372549 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.4:19371571-19371590 | MS.gene066093:intron | 45.0% | |
| CGTACGGTAAGGAAAAAGGT+AGG | + | chr8.4:19371814-19371833 | None:intergenic | 45.0% | |
| GCCAGATAAGCATGTGAAGA+AGG | - | chr8.4:19371630-19371649 | MS.gene066093:CDS | 45.0% | |
| GCCTTCTTCACATGCTTATC+TGG | + | chr8.4:19371634-19371653 | None:intergenic | 45.0% | |
| GCTGAGTCTAAATATCTCGC+TGG | - | chr8.4:19372267-19372286 | MS.gene066093:intron | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.4:19372509-19372528 | None:intergenic | 45.0% | |
| GGATTGAGAGACAGTGTGAT+TGG | - | chr8.4:19372327-19372346 | MS.gene066093:intron | 45.0% | |
| GTCTAAATATCTCGCTGGGA+TGG | - | chr8.4:19372272-19372291 | MS.gene066093:intron | 45.0% | |
| GTCTCTCAATCCATCCACAA+TGG | + | chr8.4:19372319-19372338 | None:intergenic | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.4:19372498-19372517 | MS.gene066093:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.4:19372456-19372475 | MS.gene066093:CDS | 45.0% | |
| TGGATACTTTCTCTTTGGCC+GGG | - | chr8.4:19370975-19370994 | MS.gene066093:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | - | chr8.4:19370888-19370907 | MS.gene066093:CDS | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.4:19372240-19372259 | MS.gene066093:intron | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | - | chr8.4:19370844-19370863 | MS.gene066093:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | + | chr8.4:19372369-19372388 | None:intergenic | 45.0% |
| ! | CTCTCTTCGGGTTCAACAAT+TGG | - | chr8.4:19370857-19370876 | MS.gene066093:CDS | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | + | chr8.4:19370833-19370852 | None:intergenic | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.4:19372509-19372528 | MS.gene066093:CDS | 45.0% |
| !! | ATCGTTTGCCTTGTTTGCCA+AGG | + | chr8.4:19371244-19371263 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.4:19372510-19372529 | MS.gene066093:CDS | 45.0% |
| !! | CGGTTTGGTTTGCTTCTTTG+AGG | - | chr8.4:19371943-19371962 | MS.gene066093:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.4:19370786-19370805 | MS.gene066093:CDS | 45.0% |
| ATACCGTGCCTTGGCAAACA+AGG | - | chr8.4:19371233-19371252 | MS.gene066093:intron | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.4:19372306-19372325 | MS.gene066093:intron | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.4:19370815-19370834 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.4:19370813-19370832 | MS.gene066093:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.4:19372239-19372258 | MS.gene066093:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.4:19372448-19372467 | None:intergenic | 50.0% | |
| GAGGATCGCAGCTAATGAGA+AGG | - | chr8.4:19372200-19372219 | MS.gene066093:intron | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.4:19372462-19372481 | MS.gene066093:CDS | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | - | chr8.4:19372302-19372321 | MS.gene066093:intron | 50.0% | |
| TGCTGGTCATCTCTCTCTTC+GGG | - | chr8.4:19370845-19370864 | MS.gene066093:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.4:19372259-19372278 | None:intergenic | 50.0% | |
| !! | TTGCCTTGTTTGCCAAGGCA+CGG | + | chr8.4:19371239-19371258 | None:intergenic | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.4:19372245-19372264 | MS.gene066093:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.4:19370807-19370826 | None:intergenic | 55.0% | |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.4:19372474-19372493 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.4:19370805-19370824 | MS.gene066093:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.4:19372483-19372502 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19370717 | 19372551 | 19370717 | ID=MS.gene066093 |
| chr8.4 | mRNA | 19370717 | 19372551 | 19370717 | ID=MS.gene066093.t1;Parent=MS.gene066093 |
| chr8.4 | exon | 19372363 | 19372551 | 19372363 | ID=MS.gene066093.t1.exon1;Parent=MS.gene066093.t1 |
| chr8.4 | CDS | 19372363 | 19372551 | 19372363 | ID=cds.MS.gene066093.t1;Parent=MS.gene066093.t1 |
| chr8.4 | exon | 19371950 | 19372070 | 19371950 | ID=MS.gene066093.t1.exon2;Parent=MS.gene066093.t1 |
| chr8.4 | CDS | 19371950 | 19372070 | 19371950 | ID=cds.MS.gene066093.t1;Parent=MS.gene066093.t1 |
| chr8.4 | exon | 19371767 | 19371858 | 19371767 | ID=MS.gene066093.t1.exon3;Parent=MS.gene066093.t1 |
| chr8.4 | CDS | 19371767 | 19371858 | 19371767 | ID=cds.MS.gene066093.t1;Parent=MS.gene066093.t1 |
| chr8.4 | exon | 19371595 | 19371691 | 19371595 | ID=MS.gene066093.t1.exon4;Parent=MS.gene066093.t1 |
| chr8.4 | CDS | 19371595 | 19371691 | 19371595 | ID=cds.MS.gene066093.t1;Parent=MS.gene066093.t1 |
| chr8.4 | exon | 19370717 | 19371078 | 19370717 | ID=MS.gene066093.t1.exon5;Parent=MS.gene066093.t1 |
| chr8.4 | CDS | 19370717 | 19371078 | 19370717 | ID=cds.MS.gene066093.t1;Parent=MS.gene066093.t1 |
| Gene Sequence |
| Protein sequence |
