Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058043.t1 | XP_003608997.2 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 6.50E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058043.t1 | Q5GI04 | 87.4 | 285 | 36 | 0 | 1 | 285 | 1 | 285 | 8.0e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058043.t1 | G7JPW8 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 4.7e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058043 | MS.gene066093 | 0.94487 | 8.80E-104 | -1.69E-46 |
| MS.gene058043 | MS.gene51054 | 0.974903 | 5.55E-139 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058043 | MS.gene029948 | PPI |
| MS.gene058043 | MS.gene028857 | PPI |
| MS.gene058043 | MS.gene59292 | PPI |
| MS.gene31416 | MS.gene058043 | PPI |
| MS.gene058043 | MS.gene030984 | PPI |
| MS.gene058043 | MS.gene043467 | PPI |
| MS.gene058043 | MS.gene20481 | PPI |
| MS.gene058043 | MS.gene055768 | PPI |
| MS.gene058043 | MS.gene68929 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058043.t1 | MTR_4g107830 | 92.256 | 297 | 8 | 1 | 1 | 282 | 1 | 297 | 0.0 | 557 |
| MS.gene058043.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene058043.t1 | MTR_4g107760 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene058043.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 61 | 346 | 0.0 | 552 |
| MS.gene058043.t1 | MTR_4g107720 | 94.326 | 282 | 16 | 0 | 1 | 282 | 1 | 282 | 0.0 | 536 |
| MS.gene058043.t1 | MTR_6g011380 | 83.688 | 282 | 46 | 0 | 1 | 282 | 1 | 282 | 7.37e-180 | 497 |
| MS.gene058043.t1 | MTR_8g469160 | 79.859 | 283 | 57 | 0 | 1 | 283 | 1 | 283 | 2.90e-177 | 490 |
| MS.gene058043.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 3.22e-177 | 490 |
| MS.gene058043.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 8.19e-117 | 337 |
| MS.gene058043.t1 | MTR_4g107700 | 96.296 | 81 | 3 | 0 | 202 | 282 | 6 | 86 | 1.26e-49 | 159 |
| MS.gene058043.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 4 | 19 | 199 | 71 | 249 | 2.62e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058043.t1 | AT5G62740 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 530 |
| MS.gene058043.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene058043.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene058043.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene058043.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene058043.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene058043.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene058043.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene058043.t1 | AT3G01290 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 5.75e-170 | 472 |
| MS.gene058043.t1 | AT5G51570 | 57.042 | 284 | 120 | 1 | 1 | 282 | 1 | 284 | 7.71e-122 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.142368 | 8.4:-19295761 | MS.gene058043:CDS |
| ATGTTCTCATTGCAGTAATT+AGG | 0.205184 | 8.4:-19296783 | MS.gene058043:intron |
| GCCTTCTTCACATGCTTATC+TGG | 0.244299 | 8.4:+19296547 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.4:+19295672 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.4:+19296751 | None:intergenic |
| CTCTCTTCGGGTTCAACAAT+TGG | 0.301031 | 8.4:-19297322 | MS.gene058043:CDS |
| TGTTCTCATTGCAGTAATTA+GGG | 0.306159 | 8.4:-19296782 | MS.gene058043:intron |
| TGCTGGTCATCTCTCTCTTC+GGG | 0.329796 | 8.4:-19297334 | MS.gene058043:CDS |
| TTGACACTATGAAAGAAATT+GGG | 0.344707 | 8.4:-19295760 | MS.gene058043:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.4:-19296607 | MS.gene058043:intron |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.350694 | 8.4:-19297335 | MS.gene058043:CDS |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.4:-19297420 | MS.gene058043:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.4:-19297351 | MS.gene058043:CDS |
| GGATTGAGAGACAGTGTGAT+TGG | 0.394088 | 8.4:-19295851 | MS.gene058043:CDS |
| GCCAGATAAGCATGTGAAGA+AGG | 0.431501 | 8.4:-19296548 | MS.gene058043:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.4:-19295669 | MS.gene058043:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.437735 | 8.4:-19295801 | MS.gene058043:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.4:-19297394 | MS.gene058043:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.4:-19297366 | MS.gene058043:CDS |
| GTCTAAATATCTCGCTGGGA+TGG | 0.480437 | 8.4:-19295906 | MS.gene058043:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.481733 | 8.4:-19296954 | MS.gene058043:CDS |
| ATCGTTTGCCTTGTTTGCCA+AGG | 0.508315 | 8.4:+19296937 | None:intergenic |
| TAACAAACCAACCTTTGTCT+TGG | 0.511154 | 8.4:+19297284 | None:intergenic |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.4:-19297426 | MS.gene058043:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.4:-19297393 | MS.gene058043:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.4:+19297375 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.4:+19295730 | None:intergenic |
| TCTAAATATCTCGCTGGGAT+GGG | 0.525100 | 8.4:-19295905 | MS.gene058043:CDS |
| TTGCCTTGTTTGCCAAGGCA+CGG | 0.526106 | 8.4:+19296942 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.4:-19295716 | MS.gene058043:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.529578 | 8.4:-19295872 | MS.gene058043:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.4:-19297374 | MS.gene058043:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.4:-19295933 | MS.gene058043:CDS |
| GCTGAGTCTAAATATCTCGC+TGG | 0.552574 | 8.4:-19295911 | MS.gene058043:CDS |
| GACAAGTGCAAAAGATGTCA+TGG | 0.553387 | 8.4:-19295807 | MS.gene058043:CDS |
| CAGTGTTCCAAAACTCAACT+TGG | 0.553554 | 8.4:-19296758 | MS.gene058043:CDS |
| TATGATTAGCTGCAAGAATG+AGG | 0.556005 | 8.4:-19295997 | MS.gene058043:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.4:+19295698 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.558940 | 8.4:-19296526 | MS.gene058043:intron |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.4:-19295722 | MS.gene058043:CDS |
| ATACCGTGCCTTGGCAAACA+AGG | 0.570829 | 8.4:-19296945 | MS.gene058043:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.4:+19295733 | None:intergenic |
| TGACACTATGAAAGAAATTG+GGG | 0.579718 | 8.4:-19295759 | MS.gene058043:CDS |
| CTGAGTCTAAATATCTCGCT+GGG | 0.580679 | 8.4:-19295910 | MS.gene058043:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.4:+19297367 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.4:+19295922 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.4:-19296716 | MS.gene058043:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.4:-19296698 | MS.gene058043:intron |
| ACTCATGAGTTAGAGAACCC+TGG | 0.616759 | 8.4:+19295651 | None:intergenic |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.4:-19297439 | MS.gene058043:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.4:-19295680 | MS.gene058043:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.4:-19296908 | MS.gene058043:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.4:-19296910 | MS.gene058043:CDS |
| GAGGATCGCAGCTAATGAGA+AGG | 0.632818 | 8.4:-19295978 | MS.gene058043:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.4:-19295668 | MS.gene058043:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.4:-19295939 | MS.gene058043:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.4:-19295876 | MS.gene058043:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.4:-19297295 | MS.gene058043:intron |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.4:-19295938 | MS.gene058043:CDS |
| GTCTCTCAATCCATCCACAA+TGG | 0.662038 | 8.4:+19295862 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.4:+19295707 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.4:-19296909 | MS.gene058043:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.4:+19295777 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATAACAATATTGT+GGG | + | chr8.4:19296638-19296657 | None:intergenic | 10.0% |
| !! | AATAAAAATTAAAATTATCC+CGG | + | chr8.4:19295928-19295947 | None:intergenic | 10.0% |
| !! | TAAATATAATAACAATATTG+TGG | + | chr8.4:19296639-19296658 | None:intergenic | 10.0% |
| !! | TTATTTATATGAATTAAACT+TGG | - | chr8.4:19296656-19296675 | MS.gene058043:intron | 10.0% |
| !!! | GGATAATTTTAATTTTTATT+AGG | - | chr8.4:19295928-19295947 | MS.gene058043:CDS | 10.0% |
| !! | AATATAATAACAATATTGTG+GGG | + | chr8.4:19296637-19296656 | None:intergenic | 15.0% |
| !! | TTTAATATTTATTTGCTTGT+AGG | - | chr8.4:19296109-19296128 | MS.gene058043:intron | 15.0% |
| !!! | TTTATTTTATTCTCTAAAAG+AGG | - | chr8.4:19296701-19296720 | MS.gene058043:CDS | 15.0% |
| !! | AAAAATTTGAGAACAATGTA+CGG | + | chr8.4:19296067-19296086 | None:intergenic | 20.0% |
| !! | ACAATTAGTATTTACAGATA+AGG | - | chr8.4:19296448-19296467 | MS.gene058043:intron | 20.0% |
| !! | ATGTAACAAAAAACTATGTA+GGG | - | chr8.4:19296773-19296792 | MS.gene058043:intron | 20.0% |
| !! | CCATAGTTAAGAAAATATAT+AGG | + | chr8.4:19295983-19296002 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGGAATTAACTC+CGG | - | chr8.4:19296856-19296875 | MS.gene058043:intron | 20.0% |
| !!! | CCTATATATTTTCTTAACTA+TGG | - | chr8.4:19295980-19295999 | MS.gene058043:CDS | 20.0% |
| !!! | TTTTGCTGCAAAATTTATTT+TGG | - | chr8.4:19296844-19296863 | MS.gene058043:intron | 20.0% |
| ! | AATCAAAATAACATAGCACA+AGG | + | chr8.4:19295960-19295979 | None:intergenic | 25.0% |
| ! | CATGTAACAAAAAACTATGT+AGG | - | chr8.4:19296772-19296791 | MS.gene058043:intron | 25.0% |
| ! | GGAAACAGTATATGAAAATA+TGG | + | chr8.4:19297090-19297109 | None:intergenic | 25.0% |
| ! | TTGACACTATGAAAGAAATT+GGG | - | chr8.4:19297351-19297370 | MS.gene058043:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.4:19297350-19297369 | MS.gene058043:CDS | 25.0% |
| !! | ATTGTTCTCAAATTTTTCCA+TGG | - | chr8.4:19296070-19296089 | MS.gene058043:intron | 25.0% |
| !! | TTGTTCTCAAATTTTTCCAT+GGG | - | chr8.4:19296071-19296090 | MS.gene058043:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.4:19295705-19295724 | MS.gene058043:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.4:19296230-19296249 | MS.gene058043:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.4:19296395-19296414 | MS.gene058043:intron | 30.0% | |
| ACAAATCAACATTTATCCCA+TGG | + | chr8.4:19296090-19296109 | None:intergenic | 30.0% | |
| AGCAATAAACATGCAATTAC+TGG | - | chr8.4:19296273-19296292 | MS.gene058043:intron | 30.0% | |
| ATCATAGCATAACCAACTAT+TGG | + | chr8.4:19296903-19296922 | None:intergenic | 30.0% | |
| ATGTTCTCATTGCAGTAATT+AGG | - | chr8.4:19296328-19296347 | MS.gene058043:intron | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | + | chr8.4:19296229-19296248 | None:intergenic | 30.0% | |
| TAGTTGGTTATGCTATGATA+TGG | - | chr8.4:19296904-19296923 | MS.gene058043:CDS | 30.0% | |
| TGACACTATGAAAGAAATTG+GGG | - | chr8.4:19297352-19297371 | MS.gene058043:CDS | 30.0% | |
| TGTTCTCATTGCAGTAATTA+GGG | - | chr8.4:19296329-19296348 | MS.gene058043:intron | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8.4:19296202-19296221 | MS.gene058043:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.4:19296201-19296220 | MS.gene058043:intron | 30.0% | |
| TTTGTTACATGTAAGACGTA+CGG | + | chr8.4:19296763-19296782 | None:intergenic | 30.0% | |
| ! | AATTTTGCAGCAAAAGACTT+AGG | + | chr8.4:19296839-19296858 | None:intergenic | 30.0% |
| ATATGGTAATCCAAGAGCAA+AGG | + | chr8.4:19297073-19297092 | None:intergenic | 35.0% | |
| ATCCATGTGATTGATAAGCA+TGG | + | chr8.4:19295892-19295911 | None:intergenic | 35.0% | |
| CCAAATATATCCTTTGCTCT+TGG | - | chr8.4:19297060-19297079 | MS.gene058043:intron | 35.0% | |
| CCAAGAGCAAAGGATATATT+TGG | + | chr8.4:19297063-19297082 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.4:19296585-19296604 | MS.gene058043:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.4:19295830-19295849 | None:intergenic | 35.0% | |
| TAACTTTGAATCGTCTCAAC+AGG | - | chr8.4:19296488-19296507 | MS.gene058043:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8.4:19296203-19296222 | MS.gene058043:intron | 35.0% | |
| TATATTTGGCACATAGCACT+CGG | + | chr8.4:19297049-19297068 | None:intergenic | 35.0% | |
| TCACATGGATACTTTCTCTT+TGG | - | chr8.4:19295902-19295921 | MS.gene058043:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.4:19297310-19297329 | MS.gene058043:CDS | 35.0% | |
| TGCATGTTTATTGCTAAGCA+GGG | + | chr8.4:19296268-19296287 | None:intergenic | 35.0% | |
| TGTGATTGATAAGCATGGAA+TGG | + | chr8.4:19295887-19295906 | None:intergenic | 35.0% | |
| TTCCATGCTTATCAATCACA+TGG | - | chr8.4:19295887-19295906 | MS.gene058043:CDS | 35.0% | |
| TTGCATGTTTATTGCTAAGC+AGG | + | chr8.4:19296269-19296288 | None:intergenic | 35.0% | |
| TTTACAGATAAGGTGAACTG+AGG | - | chr8.4:19296458-19296477 | MS.gene058043:intron | 35.0% | |
| ! | GATTTTCAGAGAATGTACCA+GGG | - | chr8.4:19297282-19297301 | MS.gene058043:intron | 35.0% |
| ! | TATGATTAGCTGCAAGAATG+AGG | - | chr8.4:19297114-19297133 | MS.gene058043:intron | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | + | chr8.4:19296363-19296382 | None:intergenic | 35.0% |
| !! | TATACACAGAGTACTGAAAG+TGG | + | chr8.4:19296028-19296047 | None:intergenic | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.4:19297337-19297356 | None:intergenic | 35.0% |
| !!! | TTTTGGAATTAACTCCGGTT+TGG | - | chr8.4:19296861-19296880 | MS.gene058043:intron | 35.0% |
| AAGACGTACGGTAAGGAAAA+AGG | + | chr8.4:19296751-19296770 | None:intergenic | 40.0% | |
| AAGACTTAGGATCAGATGCT+TGG | + | chr8.4:19296826-19296845 | None:intergenic | 40.0% | |
| AATATTGTGGGGACATCTCA+TGG | + | chr8.4:19296626-19296645 | None:intergenic | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.4:19297384-19297403 | None:intergenic | 40.0% | |
| ATGGATACTTTCTCTTTGGC+CGG | - | chr8.4:19295906-19295925 | MS.gene058043:CDS | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.4:19295816-19295835 | MS.gene058043:CDS | 40.0% | |
| CAGTGTTCCAAAACTCAACT+TGG | - | chr8.4:19296353-19296372 | MS.gene058043:intron | 40.0% | |
| CATGGAATGGCATGAAGATT+TGG | + | chr8.4:19295874-19295893 | None:intergenic | 40.0% | |
| CTCAAAGAAGCAAACCAAAC+CGG | + | chr8.4:19296878-19296897 | None:intergenic | 40.0% | |
| CTGAGTCTAAATATCTCGCT+GGG | - | chr8.4:19297201-19297220 | MS.gene058043:intron | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | - | chr8.4:19297304-19297323 | MS.gene058043:CDS | 40.0% | |
| TACATGTAAGACGTACGGTA+AGG | + | chr8.4:19296758-19296777 | None:intergenic | 40.0% | |
| TCTAAATATCTCGCTGGGAT+GGG | - | chr8.4:19297206-19297225 | MS.gene058043:intron | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | - | chr8.4:19295685-19295704 | MS.gene058043:CDS | 40.0% | |
| TCTTGCAGCTAATCATAGAC+AGG | + | chr8.4:19297111-19297130 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.4:19296413-19296432 | MS.gene058043:intron | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.4:19295760-19295779 | MS.gene058043:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.4:19296157-19296176 | MS.gene058043:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.4:19295757-19295776 | None:intergenic | 40.0% |
| ! | GGATTTTCAGAGAATGTACC+AGG | - | chr8.4:19297281-19297300 | MS.gene058043:intron | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.4:19295691-19295710 | MS.gene058043:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.4:19295717-19295736 | MS.gene058043:CDS | 40.0% |
| !! | CTTCTTTGAGGTCCAATAGT+TGG | - | chr8.4:19296888-19296907 | MS.gene058043:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.4:19295672-19295691 | MS.gene058043:CDS | 40.0% |
| !!! | CAAGTTGAGTTTTGGAACAC+TGG | + | chr8.4:19296355-19296374 | None:intergenic | 40.0% |
| ACTCATGAGTTAGAGAACCC+TGG | + | chr8.4:19297463-19297482 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.4:19296504-19296523 | MS.gene058043:intron | 45.0% | |
| CGTACGGTAAGGAAAAAGGT+AGG | + | chr8.4:19296747-19296766 | None:intergenic | 45.0% | |
| GCCAGATAAGCATGTGAAGA+AGG | - | chr8.4:19296563-19296582 | MS.gene058043:CDS | 45.0% | |
| GCCTTCTTCACATGCTTATC+TGG | + | chr8.4:19296567-19296586 | None:intergenic | 45.0% | |
| GCTGAGTCTAAATATCTCGC+TGG | - | chr8.4:19297200-19297219 | MS.gene058043:intron | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.4:19297442-19297461 | None:intergenic | 45.0% | |
| GGATTGAGAGACAGTGTGAT+TGG | - | chr8.4:19297260-19297279 | MS.gene058043:intron | 45.0% | |
| GTCTAAATATCTCGCTGGGA+TGG | - | chr8.4:19297205-19297224 | MS.gene058043:intron | 45.0% | |
| GTCTCTCAATCCATCCACAA+TGG | + | chr8.4:19297252-19297271 | None:intergenic | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.4:19297431-19297450 | MS.gene058043:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.4:19297389-19297408 | MS.gene058043:CDS | 45.0% | |
| TGGATACTTTCTCTTTGGCC+GGG | - | chr8.4:19295907-19295926 | MS.gene058043:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | - | chr8.4:19295820-19295839 | MS.gene058043:CDS | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.4:19297173-19297192 | MS.gene058043:intron | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | - | chr8.4:19295776-19295795 | MS.gene058043:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | + | chr8.4:19297302-19297321 | None:intergenic | 45.0% |
| ! | CTCTCTTCGGGTTCAACAAT+TGG | - | chr8.4:19295789-19295808 | MS.gene058043:CDS | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | + | chr8.4:19295765-19295784 | None:intergenic | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.4:19297442-19297461 | MS.gene058043:CDS | 45.0% |
| !! | ATCGTTTGCCTTGTTTGCCA+AGG | + | chr8.4:19296177-19296196 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.4:19297443-19297462 | MS.gene058043:CDS | 45.0% |
| !! | CGGTTTGGTTTGCTTCTTTG+AGG | - | chr8.4:19296876-19296895 | MS.gene058043:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.4:19295718-19295737 | MS.gene058043:CDS | 45.0% |
| ATACCGTGCCTTGGCAAACA+AGG | - | chr8.4:19296166-19296185 | MS.gene058043:intron | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.4:19297239-19297258 | MS.gene058043:intron | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.4:19295747-19295766 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.4:19295745-19295764 | MS.gene058043:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.4:19297172-19297191 | MS.gene058043:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.4:19297381-19297400 | None:intergenic | 50.0% | |
| GAGGATCGCAGCTAATGAGA+AGG | - | chr8.4:19297133-19297152 | MS.gene058043:intron | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.4:19297395-19297414 | MS.gene058043:CDS | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | - | chr8.4:19297235-19297254 | MS.gene058043:intron | 50.0% | |
| TGCTGGTCATCTCTCTCTTC+GGG | - | chr8.4:19295777-19295796 | MS.gene058043:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.4:19297192-19297211 | None:intergenic | 50.0% | |
| !! | TTGCCTTGTTTGCCAAGGCA+CGG | + | chr8.4:19296172-19296191 | None:intergenic | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.4:19297178-19297197 | MS.gene058043:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.4:19295739-19295758 | None:intergenic | 55.0% | |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.4:19297407-19297426 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.4:19295737-19295756 | MS.gene058043:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.4:19297416-19297435 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19295649 | 19297484 | 19295649 | ID=MS.gene058043 |
| chr8.4 | mRNA | 19295649 | 19297484 | 19295649 | ID=MS.gene058043.t1;Parent=MS.gene058043 |
| chr8.4 | exon | 19297296 | 19297484 | 19297296 | ID=MS.gene058043.t1.exon1;Parent=MS.gene058043.t1 |
| chr8.4 | CDS | 19297296 | 19297484 | 19297296 | ID=cds.MS.gene058043.t1;Parent=MS.gene058043.t1 |
| chr8.4 | exon | 19296882 | 19297002 | 19296882 | ID=MS.gene058043.t1.exon2;Parent=MS.gene058043.t1 |
| chr8.4 | CDS | 19296882 | 19297002 | 19296882 | ID=cds.MS.gene058043.t1;Parent=MS.gene058043.t1 |
| chr8.4 | exon | 19296699 | 19296790 | 19296699 | ID=MS.gene058043.t1.exon3;Parent=MS.gene058043.t1 |
| chr8.4 | CDS | 19296699 | 19296790 | 19296699 | ID=cds.MS.gene058043.t1;Parent=MS.gene058043.t1 |
| chr8.4 | exon | 19296527 | 19296623 | 19296527 | ID=MS.gene058043.t1.exon4;Parent=MS.gene058043.t1 |
| chr8.4 | CDS | 19296527 | 19296623 | 19296527 | ID=cds.MS.gene058043.t1;Parent=MS.gene058043.t1 |
| chr8.4 | exon | 19295649 | 19296010 | 19295649 | ID=MS.gene058043.t1.exon5;Parent=MS.gene058043.t1 |
| chr8.4 | CDS | 19295649 | 19296010 | 19295649 | ID=cds.MS.gene058043.t1;Parent=MS.gene058043.t1 |
| Gene Sequence |
| Protein sequence |
