Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067234.t1 | XP_013445298.1 | 94.3 | 386 | 19 | 1 | 1 | 386 | 1 | 383 | 1.00E-182 | 649.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067234.t1 | Q7VG78 | 40.8 | 191 | 108 | 2 | 190 | 375 | 778 | 968 | 4.1e-39 | 163.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067234.t1 | A0A072TP99 | 94.3 | 386 | 19 | 1 | 1 | 386 | 1 | 383 | 7.4e-183 | 649.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050438 | MS.gene067234 | 0.80641 | 8.34E-50 | -1.69E-46 |
| MS.gene050586 | MS.gene067234 | 0.826843 | 2.17E-54 | -1.69E-46 |
| MS.gene050778 | MS.gene067234 | 0.809531 | 1.81E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene067234 | 0.801051 | 1.08E-48 | -1.69E-46 |
| MS.gene050959 | MS.gene067234 | 0.817027 | 4.08E-52 | -1.69E-46 |
| MS.gene051388 | MS.gene067234 | 0.816432 | 5.55E-52 | -1.69E-46 |
| MS.gene052564 | MS.gene067234 | 0.814722 | 1.33E-51 | -1.69E-46 |
| MS.gene052565 | MS.gene067234 | 0.81498 | 1.17E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene067234 | 0.85332 | 2.58E-61 | -1.69E-46 |
| MS.gene054473 | MS.gene067234 | 0.81508 | 1.11E-51 | -1.69E-46 |
| MS.gene055861 | MS.gene067234 | -0.829689 | 4.47E-55 | -1.69E-46 |
| MS.gene057469 | MS.gene067234 | 0.808588 | 2.88E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene067234 | 0.807609 | 4.65E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene067234 | 0.811124 | 8.19E-51 | -1.69E-46 |
| MS.gene058982 | MS.gene067234 | 0.804273 | 2.34E-49 | -1.69E-46 |
| MS.gene060404 | MS.gene067234 | 0.821574 | 3.76E-53 | -1.69E-46 |
| MS.gene060480 | MS.gene067234 | 0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene060677 | MS.gene067234 | 0.800132 | 1.66E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067234.t1 | MTR_8g447000 | 95.337 | 386 | 15 | 1 | 1 | 386 | 1 | 383 | 0.0 | 751 |
| MS.gene067234.t1 | MTR_2g063510 | 74.559 | 397 | 82 | 6 | 1 | 386 | 1 | 389 | 0.0 | 557 |
| MS.gene067234.t1 | MTR_8g447000 | 94.020 | 301 | 15 | 1 | 1 | 301 | 1 | 298 | 0.0 | 527 |
| MS.gene067234.t1 | MTR_2g063510 | 70.093 | 321 | 75 | 7 | 1 | 308 | 1 | 313 | 4.16e-137 | 394 |
| MS.gene067234.t1 | MTR_4g130880 | 51.596 | 188 | 89 | 1 | 197 | 382 | 147 | 334 | 1.41e-69 | 223 |
| MS.gene067234.t1 | MTR_4g007070 | 48.691 | 191 | 96 | 1 | 195 | 383 | 134 | 324 | 2.06e-67 | 218 |
| MS.gene067234.t1 | MTR_0009s0230 | 46.354 | 192 | 101 | 1 | 196 | 385 | 110 | 301 | 3.64e-66 | 213 |
| MS.gene067234.t1 | MTR_3g111690 | 49.735 | 189 | 92 | 2 | 198 | 383 | 128 | 316 | 1.52e-64 | 209 |
| MS.gene067234.t1 | MTR_0009s0230 | 45.833 | 192 | 101 | 2 | 196 | 385 | 110 | 300 | 1.75e-63 | 206 |
| MS.gene067234.t1 | MTR_8g066040 | 43.541 | 209 | 99 | 3 | 196 | 385 | 114 | 322 | 4.76e-61 | 200 |
| MS.gene067234.t1 | MTR_4g130880 | 44.860 | 107 | 57 | 1 | 197 | 301 | 147 | 253 | 2.36e-27 | 109 |
| MS.gene067234.t1 | MTR_6g052980 | 66.667 | 45 | 15 | 0 | 255 | 299 | 43 | 87 | 9.60e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067234.t1 | AT3G12710 | 68.364 | 275 | 69 | 5 | 114 | 385 | 50 | 309 | 3.03e-131 | 379 |
| MS.gene067234.t1 | AT5G44680 | 51.546 | 388 | 150 | 6 | 1 | 386 | 1 | 352 | 5.47e-130 | 377 |
| MS.gene067234.t1 | AT1G75090 | 51.596 | 188 | 89 | 1 | 198 | 383 | 119 | 306 | 2.99e-72 | 229 |
| MS.gene067234.t1 | AT5G57970 | 52.356 | 191 | 89 | 1 | 195 | 383 | 151 | 341 | 2.34e-71 | 227 |
| MS.gene067234.t1 | AT5G57970 | 52.356 | 191 | 89 | 1 | 195 | 383 | 151 | 341 | 2.34e-71 | 227 |
| MS.gene067234.t1 | AT1G80850 | 54.301 | 186 | 83 | 1 | 198 | 381 | 134 | 319 | 7.60e-71 | 225 |
| MS.gene067234.t1 | AT1G13635 | 49.231 | 195 | 97 | 1 | 193 | 385 | 110 | 304 | 8.09e-70 | 222 |
| MS.gene067234.t1 | AT1G13635 | 49.231 | 195 | 97 | 1 | 193 | 385 | 110 | 304 | 8.09e-70 | 222 |
| MS.gene067234.t1 | AT1G15970 | 50.262 | 191 | 87 | 2 | 198 | 383 | 145 | 332 | 2.91e-67 | 217 |
| MS.gene067234.t1 | AT1G15970 | 50.262 | 191 | 87 | 2 | 198 | 383 | 145 | 332 | 2.91e-67 | 217 |
Find 72 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGGTCTTCCATTGATTT+TGG | 0.179487 | 8.1:-58972099 | None:intergenic |
| TGAAGAAACGTCAGAATTTC+AGG | 0.191617 | 8.1:+58973470 | MS.gene067234:CDS |
| GACTTTAACTTTGGTGAATT+TGG | 0.213840 | 8.1:-58972245 | None:intergenic |
| CTCTTTGTTGCTGGTGGTCT+TGG | 0.216304 | 8.1:-58972269 | None:intergenic |
| TTGTCTATTAGTTTGGAATA+TGG | 0.244808 | 8.1:+58973834 | MS.gene067234:CDS |
| ACAAATGTTGTCTATTAGTT+TGG | 0.247258 | 8.1:+58973827 | MS.gene067234:CDS |
| GAAATCTTCGTTAAATTTCT+TGG | 0.258850 | 8.1:-58972341 | None:intergenic |
| TTCTATGCCTACTTTGGTCT+TGG | 0.263306 | 8.1:-58972042 | None:intergenic |
| GAATTTCTTCTTTCAAGATT+TGG | 0.263831 | 8.1:-58972146 | None:intergenic |
| GATGGTAGTGAAAGTGATTT+TGG | 0.282834 | 8.1:-58972185 | None:intergenic |
| ATGTCTTCACTGGAATCTTA+TGG | 0.298466 | 8.1:-58974677 | None:intergenic |
| AAAATGAAGATTGCTCATTA+TGG | 0.312266 | 8.1:+58972512 | MS.gene067234:CDS |
| AACTTGTATTGTGTGGAAAT+AGG | 0.315120 | 8.1:-58974651 | None:intergenic |
| TCATTGACTCTCTTTGTTGC+TGG | 0.326408 | 8.1:-58972278 | None:intergenic |
| ACATGATCAGAAGAGGCTTT+AGG | 0.331121 | 8.1:+58974724 | MS.gene067234:CDS |
| CTCTCTGAATTACCTGAATT+AGG | 0.352616 | 8.1:-58972644 | None:intergenic |
| TGGTGGTGTTGATGAAGTTT+TGG | 0.353427 | 8.1:-58972225 | None:intergenic |
| GGTCTTGGTGACTTTAACTT+TGG | 0.357782 | 8.1:-58972254 | None:intergenic |
| ATTTCCACACAATACAAGTT+TGG | 0.362445 | 8.1:+58974654 | MS.gene067234:CDS |
| GTTCATTTGATAAATACATA+TGG | 0.363388 | 8.1:+58974610 | MS.gene067234:CDS |
| AGAATTTAATGCAGCAACTT+TGG | 0.368329 | 8.1:+58973788 | MS.gene067234:CDS |
| TTCTCATCAGCATGACAATA+AGG | 0.369609 | 8.1:-58974838 | None:intergenic |
| ATCATGATAAGTAATATAGA+TGG | 0.371470 | 8.1:-58973241 | None:intergenic |
| AGAAGAGGCTTTAGGTTTGT+AGG | 0.383881 | 8.1:+58974732 | MS.gene067234:CDS |
| TACTTATCATGATGAGGAAT+GGG | 0.384161 | 8.1:+58973251 | MS.gene067234:CDS |
| TTACAAGTTGGTTGAAGAAC+AGG | 0.385259 | 8.1:-58972116 | None:intergenic |
| GATTCACCAGGGAGTATTGC+TGG | 0.391119 | 8.1:+58972449 | MS.gene067234:CDS |
| AGCTTTATTACACCTAATTC+AGG | 0.412359 | 8.1:+58972632 | MS.gene067234:CDS |
| CTGACGTTTCTTCAAGATTG+AGG | 0.413643 | 8.1:-58973461 | None:intergenic |
| CAGGGAGTATTGCTGGCTTA+AGG | 0.421059 | 8.1:+58972456 | MS.gene067234:CDS |
| TTCATTTGATAAATACATAT+GGG | 0.421482 | 8.1:+58974611 | MS.gene067234:CDS |
| ACTTACTTGTCATCATGAAC+TGG | 0.454154 | 8.1:-58973279 | None:intergenic |
| GTTGGAAGTGGTGGTGATGA+TGG | 0.454983 | 8.1:-58972203 | None:intergenic |
| TCACCTGTTGCCAAAATCAA+TGG | 0.455608 | 8.1:+58972089 | MS.gene067234:CDS |
| TTTGAAATAAGATTGTTTGA+AGG | 0.459190 | 8.1:-58972581 | None:intergenic |
| CATTTGTTTATCAGTTAAGC+TGG | 0.466390 | 8.1:-58973811 | None:intergenic |
| TTACAGGTTAACAAGGACTT+TGG | 0.477182 | 8.1:+58974588 | MS.gene067234:intron |
| CATTCGTTTATGCAAGCAGC+TGG | 0.483851 | 8.1:+58974768 | MS.gene067234:CDS |
| TGTGCTTTCTATGCCTACTT+TGG | 0.484066 | 8.1:-58972048 | None:intergenic |
| TTGACTCTCTTTGTTGCTGG+TGG | 0.490510 | 8.1:-58972275 | None:intergenic |
| GAAGAGGCTTTAGGTTTGTA+GGG | 0.499476 | 8.1:+58974733 | MS.gene067234:CDS |
| TTTAACTTTGGTGAATTTGG+TGG | 0.513036 | 8.1:-58972242 | None:intergenic |
| TTACTTATCATGATGAGGAA+TGG | 0.527949 | 8.1:+58973250 | MS.gene067234:CDS |
| AGTCAAAGAGTTTGAAAGAA+GGG | 0.533649 | 8.1:+58972375 | MS.gene067234:CDS |
| GTGCTCAAGTTGGATCTGAT+TGG | 0.533668 | 8.1:+58973437 | MS.gene067234:CDS |
| TTTGGAACTCTGTTACAAGT+TGG | 0.544819 | 8.1:-58972128 | None:intergenic |
| AAGTCAAAGAGTTTGAAAGA+AGG | 0.556152 | 8.1:+58972374 | MS.gene067234:CDS |
| TGCAGCTCCAAGACCAAAGT+AGG | 0.560303 | 8.1:+58972035 | MS.gene067234:CDS |
| ATCGACATAAGCAGAGTTCG+AGG | 0.564739 | 8.1:+58973858 | MS.gene067234:CDS |
| AGGTGCATTTCAAGTGGCTG+TGG | 0.567532 | 8.1:-58974818 | None:intergenic |
| AGCAAAGACATGATCAGAAG+AGG | 0.567539 | 8.1:+58974717 | MS.gene067234:CDS |
| AGTTTGAAAGAAGGGTCTTG+TGG | 0.570144 | 8.1:+58972383 | MS.gene067234:CDS |
| GCAAGTGATTAAGTGGTCAT+TGG | 0.573542 | 8.1:-58974796 | None:intergenic |
| AGGGTCTTGTGGTTCTAATG+AGG | 0.579676 | 8.1:+58972394 | MS.gene067234:CDS |
| GGCTGTGGCAAGTGATTAAG+TGG | 0.581468 | 8.1:-58974803 | None:intergenic |
| TCATTTGATAAATACATATG+GGG | 0.581577 | 8.1:+58974612 | MS.gene067234:CDS |
| CTTAAGCCAGCAATACTCCC+TGG | 0.582568 | 8.1:-58972455 | None:intergenic |
| TCATGATAAGTAATATAGAT+GGG | 0.592401 | 8.1:-58973240 | None:intergenic |
| GGCAACAGGTGATGTAGCTG+TGG | 0.595305 | 8.1:-58972078 | None:intergenic |
| TGGCTTAAGGAGAGAACAGA+TGG | 0.595385 | 8.1:+58972469 | MS.gene067234:CDS |
| CTATATTACTTATCATGATG+AGG | 0.599208 | 8.1:+58973245 | MS.gene067234:CDS |
| AATTTGATCACTGATTCACC+AGG | 0.605594 | 8.1:+58972437 | MS.gene067234:CDS |
| TAGGTTTGTAGGGCCAACAG+TGG | 0.605848 | 8.1:+58974743 | MS.gene067234:CDS |
| AGATTGTTTGAAGGATCAAG+AGG | 0.610434 | 8.1:-58972572 | None:intergenic |
| TGATTAAGTGGTCATTGGTG+AGG | 0.631169 | 8.1:-58974791 | None:intergenic |
| ATGGCCAAACTTGTATTGTG+TGG | 0.631469 | 8.1:-58974658 | None:intergenic |
| GTTATATTTACAGGTTAACA+AGG | 0.634646 | 8.1:+58974581 | MS.gene067234:intron |
| ATAAACGAATGAACCACTGT+TGG | 0.637839 | 8.1:-58974756 | None:intergenic |
| ACAATAAGGTGCATTTCAAG+TGG | 0.639984 | 8.1:-58974824 | None:intergenic |
| ACTTATCATGATGAGGAATG+GGG | 0.660568 | 8.1:+58973252 | MS.gene067234:CDS |
| TGGCATTGCAGCATGCTCAG+AGG | 0.687303 | 8.1:+58972489 | MS.gene067234:CDS |
| ATTTGATCACTGATTCACCA+GGG | 0.698236 | 8.1:+58972438 | MS.gene067234:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGTAATAGAATAAAT+AGG | + | chr8.1:58972952-58972971 | MS.gene067234:intron | 10.0% |
| !! | ACTAAATTAAATAAGAATAT+AGG | - | chr8.1:58972940-58972959 | None:intergenic | 10.0% |
| !! | ATTTAGTAATAGAATAAATA+GGG | + | chr8.1:58972953-58972972 | MS.gene067234:intron | 10.0% |
| !! | TATTATTTAATTGATAAAAG+TGG | - | chr8.1:58973083-58973102 | None:intergenic | 10.0% |
| !! | TTCATTTGATAAATACATAT+GGG | + | chr8.1:58974611-58974630 | MS.gene067234:CDS | 15.0% |
| !! | TTTGTTTAAATGTTAATGTT+TGG | - | chr8.1:58974020-58974039 | None:intergenic | 15.0% |
| !!! | CAAATTTTGTTAACTATTAT+TGG | + | chr8.1:58972682-58972701 | MS.gene067234:intron | 15.0% |
| !!! | TGAAATTTAAATTCTTTTAC+AGG | + | chr8.1:58973754-58973773 | MS.gene067234:intron | 15.0% |
| !!! | TGTGATTATTTATTTTTTGT+TGG | + | chr8.1:58972879-58972898 | MS.gene067234:intron | 15.0% |
| !! | AATTAAAATCTCAATCTTGT+CGG | - | chr8.1:58974258-58974277 | None:intergenic | 20.0% |
| !! | ATAATAAAAGTGGTTATCAT+AGG | - | chr8.1:58973041-58973060 | None:intergenic | 20.0% |
| !! | ATCATGATAAGTAATATAGA+TGG | - | chr8.1:58973244-58973263 | None:intergenic | 20.0% |
| !! | ATCTTGAACATAATTAGTTA+TGG | + | chr8.1:58973107-58973126 | MS.gene067234:intron | 20.0% |
| !! | ATGTCTAAAAATAAAAGAAG+TGG | - | chr8.1:58973150-58973169 | None:intergenic | 20.0% |
| !! | GTTCATTTGATAAATACATA+TGG | + | chr8.1:58974610-58974629 | MS.gene067234:CDS | 20.0% |
| !! | TCATGATAAGTAATATAGAT+GGG | - | chr8.1:58973243-58973262 | None:intergenic | 20.0% |
| !! | TCATTTGATAAATACATATG+GGG | + | chr8.1:58974612-58974631 | MS.gene067234:CDS | 20.0% |
| !! | TGTCTAAAAATAAAAGAAGT+GGG | - | chr8.1:58973149-58973168 | None:intergenic | 20.0% |
| !! | TTAATATTCTCTCTGTAAAT+TGG | + | chr8.1:58974555-58974574 | MS.gene067234:intron | 20.0% |
| !! | TTTAATAAAAAGAGACACAT+TGG | - | chr8.1:58973215-58973234 | None:intergenic | 20.0% |
| !!! | ATAAGTGAGATCAATATTTT+AGG | - | chr8.1:58974329-58974348 | None:intergenic | 20.0% |
| !!! | TTTGAAATAAGATTGTTTGA+AGG | - | chr8.1:58972584-58972603 | None:intergenic | 20.0% |
| ! | AAAATGAAGATTGCTCATTA+TGG | + | chr8.1:58972512-58972531 | MS.gene067234:CDS | 25.0% |
| ! | AAACAAATATGAAATGTACC+TGG | + | chr8.1:58974479-58974498 | MS.gene067234:intron | 25.0% |
| ! | AACATAATTAGTTATGGACT+TGG | + | chr8.1:58973113-58973132 | MS.gene067234:intron | 25.0% |
| ! | ACAAATGTTGTCTATTAGTT+TGG | + | chr8.1:58973827-58973846 | MS.gene067234:CDS | 25.0% |
| ! | ACATAATTAGTTATGGACTT+GGG | + | chr8.1:58973114-58973133 | MS.gene067234:intron | 25.0% |
| ! | AGAGATCAAACAGAATATAT+GGG | - | chr8.1:58974287-58974306 | None:intergenic | 25.0% |
| ! | ATTAAAATCTCAATCTTGTC+GGG | - | chr8.1:58974257-58974276 | None:intergenic | 25.0% |
| ! | CTATATTACTTATCATGATG+AGG | + | chr8.1:58973245-58973264 | MS.gene067234:CDS | 25.0% |
| ! | GAAATCTTCGTTAAATTTCT+TGG | - | chr8.1:58972344-58972363 | None:intergenic | 25.0% |
| ! | GAATTTCTTCTTTCAAGATT+TGG | - | chr8.1:58972149-58972168 | None:intergenic | 25.0% |
| ! | GAGAATATAGTTCAAAATTG+CGG | - | chr8.1:58974066-58974085 | None:intergenic | 25.0% |
| ! | GCATATTATGATATTATAGC+TGG | + | chr8.1:58973968-58973987 | MS.gene067234:intron | 25.0% |
| ! | GCTAAAAATATATTCTTCGA+CGG | - | chr8.1:58972746-58972765 | None:intergenic | 25.0% |
| ! | GTTATATTTACAGGTTAACA+AGG | + | chr8.1:58974581-58974600 | MS.gene067234:intron | 25.0% |
| ! | TAGAGATCAAACAGAATATA+TGG | - | chr8.1:58974288-58974307 | None:intergenic | 25.0% |
| !! | GATTAGTTATCAGAAAAATC+AGG | - | chr8.1:58972722-58972741 | None:intergenic | 25.0% |
| !! | GATTTATTGACTGATTGATT+AGG | + | chr8.1:58972993-58973012 | MS.gene067234:intron | 25.0% |
| !! | TAATGCTAATCGAATTTTAG+AGG | + | chr8.1:58973890-58973909 | MS.gene067234:CDS | 25.0% |
| !! | TCTTATTTCAAAAACAAGTG+AGG | + | chr8.1:58972592-58972611 | MS.gene067234:CDS | 25.0% |
| !! | TCTTTGTTATAGTTGAAGTA+AGG | - | chr8.1:58974205-58974224 | None:intergenic | 25.0% |
| !! | TTGTCTATTAGTTTGGAATA+TGG | + | chr8.1:58973834-58973853 | MS.gene067234:CDS | 25.0% |
| !!! | AATTGGTTCGTTATATTTAC+AGG | + | chr8.1:58974572-58974591 | MS.gene067234:intron | 25.0% |
| !!! | ACTCAGACTTTTTAAGTATA+TGG | - | chr8.1:58972804-58972823 | None:intergenic | 25.0% |
| !!! | ATGTACTTTTTTCAGAATGA+GGG | + | chr8.1:58973725-58973744 | MS.gene067234:intron | 25.0% |
| !!! | CGAAGAATATATTTTTAGCT+AGG | + | chr8.1:58972747-58972766 | MS.gene067234:intron | 25.0% |
| !!! | TATGTACTTTTTTCAGAATG+AGG | + | chr8.1:58973724-58973743 | MS.gene067234:intron | 25.0% |
| !!! | TTTGAACTTCTAGTTTTAAG+TGG | + | chr8.1:58973415-58973434 | MS.gene067234:CDS | 25.0% |
| AACTTGTATTGTGTGGAAAT+AGG | - | chr8.1:58974654-58974673 | None:intergenic | 30.0% | |
| AAGTCAAAGAGTTTGAAAGA+AGG | + | chr8.1:58972374-58972393 | MS.gene067234:CDS | 30.0% | |
| AGAATTTAATGCAGCAACTT+TGG | + | chr8.1:58973788-58973807 | MS.gene067234:CDS | 30.0% | |
| AGTCAAAGAGTTTGAAAGAA+GGG | + | chr8.1:58972375-58972394 | MS.gene067234:CDS | 30.0% | |
| ATTTCCACACAATACAAGTT+TGG | + | chr8.1:58974654-58974673 | MS.gene067234:CDS | 30.0% | |
| CATAATTAGTTATGGACTTG+GGG | + | chr8.1:58973115-58973134 | MS.gene067234:intron | 30.0% | |
| CATTTGTTTATCAGTTAAGC+TGG | - | chr8.1:58973814-58973833 | None:intergenic | 30.0% | |
| GAGATCAAACAGAATATATG+GGG | - | chr8.1:58974286-58974305 | None:intergenic | 30.0% | |
| GTAGAATGTTCACTAAAAAC+AGG | - | chr8.1:58974102-58974121 | None:intergenic | 30.0% | |
| TACTTATCATGATGAGGAAT+GGG | + | chr8.1:58973251-58973270 | MS.gene067234:CDS | 30.0% | |
| TATTTCAAAAACAAGTGAGG+AGG | + | chr8.1:58972595-58972614 | MS.gene067234:CDS | 30.0% | |
| TTACTTATCATGATGAGGAA+TGG | + | chr8.1:58973250-58973269 | MS.gene067234:CDS | 30.0% | |
| ! | GACTTTAACTTTGGTGAATT+TGG | - | chr8.1:58972248-58972267 | None:intergenic | 30.0% |
| ! | TTTAACTTTGGTGAATTTGG+TGG | - | chr8.1:58972245-58972264 | None:intergenic | 30.0% |
| !! | AGCTTTATTACACCTAATTC+AGG | + | chr8.1:58972632-58972651 | MS.gene067234:CDS | 30.0% |
| !! | TTATAGCTGGTTCTAAATTG+TGG | + | chr8.1:58973981-58974000 | MS.gene067234:intron | 30.0% |
| !!! | TGTACTTTTTTCAGAATGAG+GGG | + | chr8.1:58973726-58973745 | MS.gene067234:intron | 30.0% |
| ACAATAAGGTGCATTTCAAG+TGG | - | chr8.1:58974827-58974846 | None:intergenic | 35.0% | |
| ACTTACTTGTCATCATGAAC+TGG | - | chr8.1:58973282-58973301 | None:intergenic | 35.0% | |
| ACTTATCATGATGAGGAATG+GGG | + | chr8.1:58973252-58973271 | MS.gene067234:CDS | 35.0% | |
| AGATTGTTTGAAGGATCAAG+AGG | - | chr8.1:58972575-58972594 | None:intergenic | 35.0% | |
| ATAAACGAATGAACCACTGT+TGG | - | chr8.1:58974759-58974778 | None:intergenic | 35.0% | |
| ATGAAATGTACCTGGAGTAT+TGG | + | chr8.1:58974487-58974506 | MS.gene067234:intron | 35.0% | |
| ATGTCTTCACTGGAATCTTA+TGG | - | chr8.1:58974680-58974699 | None:intergenic | 35.0% | |
| CTCTCTGAATTACCTGAATT+AGG | - | chr8.1:58972647-58972666 | None:intergenic | 35.0% | |
| GTTTGACACTAACACTAACA+CGG | + | chr8.1:58973557-58973576 | MS.gene067234:intron | 35.0% | |
| TATGGTCTCAAATTTGAGTC+TGG | - | chr8.1:58972786-58972805 | None:intergenic | 35.0% | |
| TCAGACACATCATAAAGTGT+CGG | - | chr8.1:58973526-58973545 | None:intergenic | 35.0% | |
| TGAAGAAACGTCAGAATTTC+AGG | + | chr8.1:58973470-58973489 | MS.gene067234:CDS | 35.0% | |
| TTACAGGTTAACAAGGACTT+TGG | + | chr8.1:58974588-58974607 | MS.gene067234:intron | 35.0% | |
| ! | AAAAATGCTTTTGCACATGC+AGG | + | chr8.1:58973386-58973405 | MS.gene067234:intron | 35.0% |
| ! | TGAAATGTACCTGGAGTATT+GGG | + | chr8.1:58974488-58974507 | MS.gene067234:intron | 35.0% |
| ! | TTTGGAACTCTGTTACAAGT+TGG | - | chr8.1:58972131-58972150 | None:intergenic | 35.0% |
| !! | AATTTGATCACTGATTCACC+AGG | + | chr8.1:58972437-58972456 | MS.gene067234:CDS | 35.0% |
| !! | ATTTGATCACTGATTCACCA+GGG | + | chr8.1:58972438-58972457 | MS.gene067234:CDS | 35.0% |
| !! | GATGGTAGTGAAAGTGATTT+TGG | - | chr8.1:58972188-58972207 | None:intergenic | 35.0% |
| !! | TCTGATTTTGATGTCTTCAC+TGG | - | chr8.1:58974690-58974709 | None:intergenic | 35.0% |
| !! | TTACAAGTTGGTTGAAGAAC+AGG | - | chr8.1:58972119-58972138 | None:intergenic | 35.0% |
| !!! | AACAGGTCTTCCATTGATTT+TGG | - | chr8.1:58972102-58972121 | None:intergenic | 35.0% |
| AAAAGAGAGAGACCAAGTAG+AGG | - | chr8.1:58973946-58973965 | None:intergenic | 40.0% | |
| ACATGATCAGAAGAGGCTTT+AGG | + | chr8.1:58974724-58974743 | MS.gene067234:CDS | 40.0% | |
| AGACCAAGTAGAGGAACAAA+AGG | - | chr8.1:58973937-58973956 | None:intergenic | 40.0% | |
| AGCAAAGACATGATCAGAAG+AGG | + | chr8.1:58974717-58974736 | MS.gene067234:CDS | 40.0% | |
| AGTTTGAAAGAAGGGTCTTG+TGG | + | chr8.1:58972383-58972402 | MS.gene067234:CDS | 40.0% | |
| ATGGCCAAACTTGTATTGTG+TGG | - | chr8.1:58974661-58974680 | None:intergenic | 40.0% | |
| ATGTGACACATGTCACATTG+TGG | + | chr8.1:58974390-58974409 | MS.gene067234:intron | 40.0% | |
| ATGTGACATGTGTCACATTG+TGG | - | chr8.1:58974388-58974407 | None:intergenic | 40.0% | |
| ATTCCACTTGTGTGACATTG+TGG | - | chr8.1:58974442-58974461 | None:intergenic | 40.0% | |
| CAAACAGAATATATGGGGTC+AGG | - | chr8.1:58974281-58974300 | None:intergenic | 40.0% | |
| CTGACGTTTCTTCAAGATTG+AGG | - | chr8.1:58973464-58973483 | None:intergenic | 40.0% | |
| GATCTCACTTATGTGACTTG+TGG | + | chr8.1:58974337-58974356 | MS.gene067234:intron | 40.0% | |
| GCAAGTGATTAAGTGGTCAT+TGG | - | chr8.1:58974799-58974818 | None:intergenic | 40.0% | |
| GTGTGATGAGAAAGAGAAGT+GGG | - | chr8.1:58973306-58973325 | None:intergenic | 40.0% | |
| TCACCTGTTGCCAAAATCAA+TGG | + | chr8.1:58972089-58972108 | MS.gene067234:CDS | 40.0% | |
| TGATTAAGTGGTCATTGGTG+AGG | - | chr8.1:58974794-58974813 | None:intergenic | 40.0% | |
| TGTGCTTTCTATGCCTACTT+TGG | - | chr8.1:58972051-58972070 | None:intergenic | 40.0% | |
| TGTGTGATGAGAAAGAGAAG+TGG | - | chr8.1:58973307-58973326 | None:intergenic | 40.0% | |
| TTCAAAAACAAGTGAGGAGG+AGG | + | chr8.1:58972598-58972617 | MS.gene067234:CDS | 40.0% | |
| TTCTATGCCTACTTTGGTCT+TGG | - | chr8.1:58972045-58972064 | None:intergenic | 40.0% | |
| ! | GAAACGTCAGAATTTCAGGT+TGG | + | chr8.1:58973474-58973493 | MS.gene067234:intron | 40.0% |
| ! | GACAGTGTAGGTATTGTGTT+TGG | + | chr8.1:58973647-58973666 | MS.gene067234:intron | 40.0% |
| ! | GGTAGTGAAAGTGATTTTGG+TGG | - | chr8.1:58972185-58972204 | None:intergenic | 40.0% |
| ! | GGTCTTGGTGACTTTAACTT+TGG | - | chr8.1:58972257-58972276 | None:intergenic | 40.0% |
| !! | AGAAGAGGCTTTAGGTTTGT+AGG | + | chr8.1:58974732-58974751 | MS.gene067234:CDS | 40.0% |
| !! | CACTAACACGGTATTGATAC+TGG | + | chr8.1:58973569-58973588 | MS.gene067234:intron | 40.0% |
| !! | CTGGTTCTAAATTGTGGTTG+CGG | + | chr8.1:58973987-58974006 | MS.gene067234:intron | 40.0% |
| !! | GAAATGTACCTGGAGTATTG+GGG | + | chr8.1:58974489-58974508 | MS.gene067234:intron | 40.0% |
| !! | GAAGAGGCTTTAGGTTTGTA+GGG | + | chr8.1:58974733-58974752 | MS.gene067234:CDS | 40.0% |
| !! | GTTTTAAGTGGTGCTCAAGT+TGG | + | chr8.1:58973427-58973446 | MS.gene067234:CDS | 40.0% |
| !! | TCATTGACTCTCTTTGTTGC+TGG | - | chr8.1:58972281-58972300 | None:intergenic | 40.0% |
| !!! | CTTCCATTGATTTTGGCAAC+AGG | - | chr8.1:58972095-58972114 | None:intergenic | 40.0% |
| !!! | GATGAAGTTTTGGTTGGAAG+TGG | - | chr8.1:58972218-58972237 | None:intergenic | 40.0% |
| !!! | GGTGTTGATGAAGTTTTGGT+TGG | - | chr8.1:58972224-58972243 | None:intergenic | 40.0% |
| !!! | TGGTGGTGTTGATGAAGTTT+TGG | - | chr8.1:58972228-58972247 | None:intergenic | 40.0% |
| ATCGACATAAGCAGAGTTCG+AGG | + | chr8.1:58973858-58973877 | MS.gene067234:CDS | 45.0% | |
| CATTCGTTTATGCAAGCAGC+TGG | + | chr8.1:58974768-58974787 | MS.gene067234:CDS | 45.0% | |
| TGACATGTGTCACATTGTGG+TGG | - | chr8.1:58974385-58974404 | None:intergenic | 45.0% | |
| TGGCTTAAGGAGAGAACAGA+TGG | + | chr8.1:58972469-58972488 | MS.gene067234:CDS | 45.0% | |
| TTGACTCTCTTTGTTGCTGG+TGG | - | chr8.1:58972278-58972297 | None:intergenic | 45.0% | |
| ! | AGTAGAGGAACAAAAGGCAC+AGG | - | chr8.1:58973931-58973950 | None:intergenic | 45.0% |
| ! | GTGCCTTTTGTTCCTCTACT+TGG | + | chr8.1:58973931-58973950 | MS.gene067234:intron | 45.0% |
| !! | AGGGTCTTGTGGTTCTAATG+AGG | + | chr8.1:58972394-58972413 | MS.gene067234:CDS | 45.0% |
| !! | GTGCTCAAGTTGGATCTGAT+TGG | + | chr8.1:58973437-58973456 | MS.gene067234:CDS | 45.0% |
| !!! | GAAGTTTTGGTTGGAAGTGG+TGG | - | chr8.1:58972215-58972234 | None:intergenic | 45.0% |
| !!! | TTTTTTTTAAATAATAAAAG+TGG | - | chr8.1:58973051-58973070 | None:intergenic | 5.0% |
| CACTTGTGTGACATTGTGGC+GGG | - | chr8.1:58974438-58974457 | None:intergenic | 50.0% | |
| CCACTTGTGTGACATTGTGG+CGG | - | chr8.1:58974439-58974458 | None:intergenic | 50.0% | |
| CTCTTTGTTGCTGGTGGTCT+TGG | - | chr8.1:58972272-58972291 | None:intergenic | 50.0% | |
| CTTAAGCCAGCAATACTCCC+TGG | - | chr8.1:58972458-58972477 | None:intergenic | 50.0% | |
| GGCTGTGGCAAGTGATTAAG+TGG | - | chr8.1:58974806-58974825 | None:intergenic | 50.0% | |
| GTCTGTCTCAGTGACAGTGT+AGG | + | chr8.1:58973635-58973654 | MS.gene067234:intron | 50.0% | |
| TAGGTTTGTAGGGCCAACAG+TGG | + | chr8.1:58974743-58974762 | MS.gene067234:CDS | 50.0% | |
| TGCAGCTCCAAGACCAAAGT+AGG | + | chr8.1:58972035-58972054 | MS.gene067234:CDS | 50.0% | |
| ! | AGGTGCATTTCAAGTGGCTG+TGG | - | chr8.1:58974821-58974840 | None:intergenic | 50.0% |
| ! | GTTGGAAGTGGTGGTGATGA+TGG | - | chr8.1:58972206-58972225 | None:intergenic | 50.0% |
| !! | AGAGAGTACCCCAATACTCC+AGG | - | chr8.1:58974500-58974519 | None:intergenic | 50.0% |
| !! | CAGGGAGTATTGCTGGCTTA+AGG | + | chr8.1:58972456-58972475 | MS.gene067234:CDS | 50.0% |
| !! | GATTCACCAGGGAGTATTGC+TGG | + | chr8.1:58972449-58972468 | MS.gene067234:CDS | 50.0% |
| !! | GTGTCACATTGTGGTGGACA+AGG | - | chr8.1:58974379-58974398 | None:intergenic | 50.0% |
| CCGCCACAATGTCACACAAG+TGG | + | chr8.1:58974436-58974455 | MS.gene067234:intron | 55.0% | |
| GGCAACAGGTGATGTAGCTG+TGG | - | chr8.1:58972081-58972100 | None:intergenic | 55.0% | |
| TGGCATTGCAGCATGCTCAG+AGG | + | chr8.1:58972489-58972508 | MS.gene067234:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 58972032 | 58974854 | 58972032 | ID=MS.gene067234 |
| chr8.1 | mRNA | 58972032 | 58974854 | 58972032 | ID=MS.gene067234.t1;Parent=MS.gene067234 |
| chr8.1 | exon | 58972032 | 58972653 | 58972032 | ID=MS.gene067234.t1.exon1;Parent=MS.gene067234.t1 |
| chr8.1 | CDS | 58972032 | 58972653 | 58972032 | ID=cds.MS.gene067234.t1;Parent=MS.gene067234.t1 |
| chr8.1 | exon | 58973238 | 58973295 | 58973238 | ID=MS.gene067234.t1.exon2;Parent=MS.gene067234.t1 |
| chr8.1 | CDS | 58973238 | 58973295 | 58973238 | ID=cds.MS.gene067234.t1;Parent=MS.gene067234.t1 |
| chr8.1 | exon | 58973408 | 58973491 | 58973408 | ID=MS.gene067234.t1.exon3;Parent=MS.gene067234.t1 |
| chr8.1 | CDS | 58973408 | 58973491 | 58973408 | ID=cds.MS.gene067234.t1;Parent=MS.gene067234.t1 |
| chr8.1 | exon | 58973776 | 58973911 | 58973776 | ID=MS.gene067234.t1.exon4;Parent=MS.gene067234.t1 |
| chr8.1 | CDS | 58973776 | 58973911 | 58973776 | ID=cds.MS.gene067234.t1;Parent=MS.gene067234.t1 |
| chr8.1 | exon | 58974594 | 58974854 | 58974594 | ID=MS.gene067234.t1.exon5;Parent=MS.gene067234.t1 |
| chr8.1 | CDS | 58974594 | 58974854 | 58974594 | ID=cds.MS.gene067234.t1;Parent=MS.gene067234.t1 |
| Gene Sequence |
| Protein sequence |
