AlfalfaGEDB | MS.gene067402

M. sativa cultivar XinJiangDaYe / MS.gene067402

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067402.t1	RHN76526.1	96.9	800	25	0	1	800	15	814	0.00E+00	1537.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067402.t1	Q8RWZ5	54.9	802	340	10	15	800	26	821	3.4e-229	796.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067402.t1	G7II65	96.9	800	25	0	1	800	16	815	0.0e+00	1537.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050787	MS.gene067402	0.846313	2.35E-59	-1.69E-46
MS.gene051190	MS.gene067402	0.818263	2.15E-52	-1.69E-46
MS.gene051568	MS.gene067402	0.862876	3.71E-64	-1.69E-46
MS.gene052190	MS.gene067402	0.835358	1.76E-56	-1.69E-46
MS.gene052333	MS.gene067402	0.830099	3.55E-55	-1.69E-46
MS.gene054183	MS.gene067402	0.806238	9.06E-50	-1.69E-46
MS.gene054291	MS.gene067402	-0.853566	2.20E-61	-1.69E-46
MS.gene054468	MS.gene067402	0.819578	1.08E-52	-1.69E-46
MS.gene054581	MS.gene067402	0.800769	1.23E-48	-1.69E-46
MS.gene055356	MS.gene067402	0.837037	6.58E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067402.t1	MTR_2g103810	97.125	800	23	0	1	800	16	815	0.0	1616
MS.gene067402.t1	MTR_3g107070	53.731	804	355	10	6	800	3	798	0.0	833
MS.gene067402.t1	MTR_1g012550	53.226	806	351	12	10	800	31	825	0.0	826
MS.gene067402.t1	MTR_2g080080	52.228	808	338	15	1	800	20	787	0.0	801
MS.gene067402.t1	MTR_2g073250	51.673	807	346	13	1	800	20	789	0.0	791
MS.gene067402.t1	MTR_2g080100	48.267	808	338	12	1	800	21	756	0.0	729
MS.gene067402.t1	MTR_2g080090	46.667	765	346	12	1	758	20	729	0.0	661
MS.gene067402.t1	MTR_3g072800	32.776	897	478	26	1	800	11	879	1.09e-130	411
MS.gene067402.t1	MTR_6g043790	35.642	794	421	26	57	798	64	819	1.27e-126	399
MS.gene067402.t1	MTR_6g043510	36.735	784	427	27	57	798	59	815	3.04e-125	395

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067402.t1	AT4G32300	52.941	816	362	11	1	800	12	821	0.0	810
MS.gene067402.t1	AT5G35370	35.323	804	441	25	15	757	27	812	2.48e-137	428
MS.gene067402.t1	AT5G24080	34.343	792	433	21	38	763	46	816	2.64e-127	402
MS.gene067402.t1	AT1G34300	33.722	771	453	22	39	778	44	787	1.75e-122	388
MS.gene067402.t1	AT2G19130	35.356	758	435	22	37	758	38	776	1.15e-121	386
MS.gene067402.t1	AT5G24080	35.028	708	376	19	119	763	3	689	1.62e-117	373
MS.gene067402.t1	AT5G24080	35.028	708	376	19	119	763	3	689	1.62e-117	373
MS.gene067402.t1	AT4G00340	34.565	758	423	22	37	750	33	761	7.18e-117	373
MS.gene067402.t1	AT4G00340	34.868	760	397	23	37	750	33	740	1.49e-116	372
MS.gene067402.t1	AT5G20050	45.963	322	155	6	454	758	79	398	4.69e-88	286

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Find 146 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTTGTTGTTGACT+TGG	0.537917	2.4:+1713620	MS.gene067402:CDS
AAAAGCAAAAGCTGAGTTGT+TGG	0.407567	2.4:-1712036	None:intergenic
AAAATCGGTGAAGGAGGATT+CGG	0.501319	2.4:+1713367	MS.gene067402:CDS
AAACACTTTGTTGTTGACTT+GGG	0.562387	2.4:+1713621	MS.gene067402:CDS
AAACGCGATCGAAGAAGGGA+AGG	0.603689	2.4:-1712815	None:intergenic
AAAGCAGAAGTATCCATTAT+TGG	0.264999	2.4:+1713475	MS.gene067402:CDS
AAAGTGGAAATGGCTTTGTT+TGG	0.419299	2.4:+1712207	MS.gene067402:CDS
AAAGTTGTTCAAATGCTTGA+AGG	0.410195	2.4:+1714147	MS.gene067402:CDS
AAATTACCACAAGACCCTTG+TGG	0.638813	2.4:+1712734	MS.gene067402:CDS
AAATTGGAAGGAGTTGGACA+AGG	0.679713	2.4:+1713439	MS.gene067402:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTATGATCAATGGGA+AGG	+	chr2.4:1713949-1713968	MS.gene067402:CDS	30.0%
AAAGTTGTTCAAATGCTTGA+AGG	+	chr2.4:1714147-1714166	MS.gene067402:CDS	30.0%
ACAATTGGCAGTGAAAAAAT+TGG	+	chr2.4:1713423-1713442	MS.gene067402:CDS	30.0%
AGAACTCGAAAAAATGTAAC+AGG	+	chr2.4:1712512-1712531	MS.gene067402:CDS	30.0%
AGCATCTTTACATGAATTCA+AGG	-	chr2.4:1712960-1712979	None:intergenic	30.0%
ATGGTGAATACTTCCAATAA+TGG	-	chr2.4:1713491-1713510	None:intergenic	30.0%
ATTGTTGGATTCAGGAAATT+TGG	+	chr2.4:1712268-1712287	MS.gene067402:CDS	30.0%
CATTTGAACAACTTTACTCA+TGG	-	chr2.4:1714142-1714161	None:intergenic	30.0%
CCAAATAAACATTTCCACTA+TGG	-	chr2.4:1712187-1712206	None:intergenic	30.0%
CCATATATTCATACACAAGA+AGG	-	chr2.4:1713561-1713580	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	1711921	1714323	1711921	ID=MS.gene067402
chr2.4	mRNA	1711921	1714323	1711921	ID=MS.gene067402.t1;Parent=MS.gene067402
chr2.4	exon	1711921	1714323	1711921	ID=MS.gene067402.t1.exon1;Parent=MS.gene067402.t1
chr2.4	CDS	1711921	1714323	1711921	ID=cds.MS.gene067402.t1;Parent=MS.gene067402.t1

Gene Sequence

>MS.gene067402

ATGCTTCTTTTGTTAAGAACCTGCCAAGCCAAAGATCAACACATTCAGAAGATATATCCTGGATTCAGTGCATCTCGATTGGATTGGAACGGCAATAACGGTTTCTTCTTACTATCCAACAACTCAGCTTTTGCTTTTGGATTCTTTACAACTCTTGATGTTTCGTTGTTTGTTTTAGTAGTCATTCATTTGAGTAGCTACAAAGTTGTCTGGACTGCAAATAGAGGCTTGCTTGTTAAAAACTCTGACAAATTTGTGTTTAACCATAGTGGAAATGTTTATTTGGAAAGTGGAAATGGCTTTGTTTGGGAAACAAACACAGCAGGACAAAAAGTTAAGGACATGGAATTGTTGGATTCAGGAAATTTGGTTTTGTTTGGTGAAAATGGGAAAACTATTTGGCAAAGTTTTAGCCATCCTACTGATACACTTTTGCCTGGTCAATCCTTTGTTGAAGGAATGACTCTTAAAAGTTTCCCGAATCGAATGAACTTGTTTCATTTTCTTGGTTATATAGAAGGTGATTTGGTTCTCTATGCAGGTTTTGAAACTACACAATTGTATTGGTCTTTAATGGGAGAAGTTAGTAATAGAACTCGAAAAAATGTAACAGGTAGGCCTAATAAGGTTCACTATGCTTCTTTGGTTTCTAATTCATGGAACTTCTATGATAAAAATGGAACTTTGGTTTGGAAAATTGTATTTTCTGATCATTCAGATCCCAAGTCATTCTATGCTGCTATTTTGGATCCAAATGGTGCAATCTCTTTTTATGATCTTAACAAAGGAAAGTCTACTAATCCTGAGGTATTTAAATTACCACAAGACCCTTGTGGAGTTCCTGAGCCTTGTGATCCTTACTATGTTTGTTTCTTTGCGAATTGGTGTGAATGTCCTTCCCTTCTTCGATCGCGTTTCAATTGCAAACCTCCTAACATCTCAGCATGTTCTCCTAGGAGTTCAACAGAACTTCTTTATGTTGGTGAACATCTTGATTATTTTGCACTTAAGTATGATGCACCTGTTTTGAAATCAACCTTGAATTCATGTAAAGATGCTTGTGTAAGAAATTGTTCTTGCCTTGTGCTTTTCTATGAAAACAGTACTGGTAGATGCTTTCATTTTGATCAGACCGGGAGCTTCCAACGGTTTAAAGGGAACACTGGTGGTTATGTTTCATATATGAAGGTTTCAACTGATAGTGGTGGCAATGATGGCAACAGTAGTGGAAAGAAGAACATGCTGCTAGTTTTTGTTATAGTGATTCTCACAGTTCTTGTTATAGCTGGTCTTATAACTGGATTTTGGCGCTTAAAGAAGAAGAAAAGTTTTGATGAGTATCCTCAGGACGCTTTAGAGGAAGATGATTTCTTTGATGGTCTCTCTAATATGCCGGCACGTTTTACCTATAGTGCACTTGCTAGAGCAACTAAGGACTTCTCGACGAAAATCGGTGAAGGAGGATTCGGCTCGGTGTATCTAGGATTACTCGAAGATGACACACAATTGGCAGTGAAAAAATTGGAAGGAGTTGGACAAGGAGCAAAAGAGTTCAAAGCAGAAGTATCCATTATTGGAAGTATTCACCATGTTCATCTTGTCAAGCTTAAAGGGTTTTGCGCTGAAGGTCCTCATCGCCTTCTTGTGTATGAATATATGGCAAGAGGGTCTTTGGATAAATGGATCTTCAAAAACAGTGAAAACACTTTGTTGTTGACTTGGGAAACAAGGTATAATATTGCAATAGGAACTGCTAAGGGATTGGCCTATCTTCATGAGGAGTGTGAAGTGAGGATCATACACTGTGATATCAAACCACAAAATGTTCTTCTTGATGATAATTTCATGGCTAAGGTTTCAGATTTCGGATTGGCAAAGCTAATGAGCAGAGAACAAAGCCATGTATTCACAACTCTTAGGGGAACAAGAGGGTATTTAGCTCCAGAGTGGATAACTAACTACGCAATTTCGGAGAAGAGTGATGTTTTCAGCTATGGAATGCTTTTGCTCGAGATTATTGGAGGAAGGAAAAACTATGATCAATGGGAAGGAGCAGAGAAAGCACATTTTCCTTCTTATGTATCAAGAATGATGGAGGAAGGAAAAATAAGAGAAGTTATTGACCAAAAGATAGACATTGATGAGAAAGATGAAAGTGTTGTGACTGCTCTTAAAGTTGCTCTTTGGTGTATACAAGATGATATGAATTTGAGACCTCCCATGAGTAAAGTTGTTCAAATGCTTGAAGGTTTGTGTCTTGTAACTGATCCACCTTCTTTGTTACAATCAAGTACTTATTCAGCTTACTTGAAAATGAGTAGTGGAGAAGCTAGTTCATCAGGACAAGCTAGTTTTTATAGTAATGTGCCCTTGTCTTGTGTTCAGTTATCAGGACCAAGATAA

Protein sequence

>MS.gene067402.t1

MLLLLRTCQAKDQHIQKIYPGFSASRLDWNGNNGFFLLSNNSAFAFGFFTTLDVSLFVLVVIHLSSYKVVWTANRGLLVKNSDKFVFNHSGNVYLESGNGFVWETNTAGQKVKDMELLDSGNLVLFGENGKTIWQSFSHPTDTLLPGQSFVEGMTLKSFPNRMNLFHFLGYIEGDLVLYAGFETTQLYWSLMGEVSNRTRKNVTGRPNKVHYASLVSNSWNFYDKNGTLVWKIVFSDHSDPKSFYAAILDPNGAISFYDLNKGKSTNPEVFKLPQDPCGVPEPCDPYYVCFFANWCECPSLLRSRFNCKPPNISACSPRSSTELLYVGEHLDYFALKYDAPVLKSTLNSCKDACVRNCSCLVLFYENSTGRCFHFDQTGSFQRFKGNTGGYVSYMKVSTDSGGNDGNSSGKKNMLLVFVIVILTVLVIAGLITGFWRLKKKKSFDEYPQDALEEDDFFDGLSNMPARFTYSALARATKDFSTKIGEGGFGSVYLGLLEDDTQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENTLLLTWETRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFMAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGAEKAHFPSYVSRMMEEGKIREVIDQKIDIDEKDESVVTALKVALWCIQDDMNLRPPMSKVVQMLEGLCLVTDPPSLLQSSTYSAYLKMSSGEASSSGQASFYSNVPLSCVQLSGPR