Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068432.t1 | XP_004497487.1 | 62.6 | 556 | 149 | 1 | 1 | 497 | 1 | 556 | 3.60E-196 | 694.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068432.t1 | B9SCB6 | 44.8 | 553 | 242 | 3 | 1 | 494 | 1 | 549 | 4.7e-136 | 486.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068432.t1 | A0A1S2Y0Q7 | 62.6 | 556 | 149 | 1 | 1 | 497 | 1 | 556 | 2.6e-196 | 694.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060118 | MS.gene068432 | 0.877052 | 8.56E-69 | -1.69E-46 |
MS.gene060119 | MS.gene068432 | 0.836337 | 9.93E-57 | -1.69E-46 |
MS.gene060120 | MS.gene068432 | 0.850564 | 1.56E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene038985 | MS.gene068432 | PPI |
MS.gene066310 | MS.gene068432 | PPI |
MS.gene068432 | MS.gene42723 | PPI |
MS.gene066316 | MS.gene068432 | PPI |
MS.gene038982 | MS.gene068432 | PPI |
MS.gene77594 | MS.gene068432 | PPI |
MS.gene068432 | MS.gene069726 | PPI |
MS.gene068432 | MS.gene045736 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068432.t1 | MTR_5g062230 | 61.331 | 556 | 153 | 4 | 1 | 497 | 1 | 553 | 0.0 | 681 |
MS.gene068432.t1 | MTR_3g464190 | 59.425 | 557 | 166 | 3 | 1 | 497 | 1 | 557 | 0.0 | 667 |
MS.gene068432.t1 | MTR_6g039440 | 59.173 | 556 | 165 | 6 | 1 | 497 | 1 | 553 | 0.0 | 660 |
MS.gene068432.t1 | MTR_6g008560 | 58.528 | 557 | 171 | 4 | 1 | 497 | 1 | 557 | 0.0 | 659 |
MS.gene068432.t1 | MTR_4g048460 | 58.076 | 551 | 170 | 4 | 7 | 497 | 12 | 561 | 0.0 | 649 |
MS.gene068432.t1 | MTR_5g073260 | 57.509 | 546 | 171 | 5 | 13 | 497 | 7 | 552 | 0.0 | 623 |
MS.gene068432.t1 | MTR_5g073200 | 57.721 | 544 | 170 | 5 | 12 | 495 | 4 | 547 | 0.0 | 617 |
MS.gene068432.t1 | MTR_5g094620 | 55.216 | 556 | 171 | 5 | 1 | 497 | 1 | 537 | 0.0 | 610 |
MS.gene068432.t1 | MTR_4g048460 | 55.507 | 454 | 141 | 4 | 7 | 400 | 12 | 464 | 1.58e-175 | 502 |
MS.gene068432.t1 | MTR_6g008560 | 54.863 | 401 | 122 | 3 | 156 | 497 | 1 | 401 | 4.84e-152 | 439 |
MS.gene068432.t1 | MTR_2g082010 | 41.423 | 548 | 256 | 10 | 13 | 497 | 23 | 568 | 4.84e-146 | 430 |
MS.gene068432.t1 | MTR_2g081980 | 41.241 | 548 | 255 | 9 | 15 | 497 | 12 | 557 | 5.10e-143 | 422 |
MS.gene068432.t1 | MTR_4g081460 | 59.639 | 332 | 131 | 2 | 2 | 331 | 7 | 337 | 2.84e-139 | 413 |
MS.gene068432.t1 | MTR_4g081460 | 54.023 | 174 | 78 | 1 | 324 | 497 | 391 | 562 | 1.52e-58 | 203 |
MS.gene068432.t1 | MTR_4g019550 | 40.037 | 542 | 264 | 10 | 15 | 497 | 19 | 558 | 3.73e-126 | 379 |
MS.gene068432.t1 | MTR_2g082060 | 37.956 | 548 | 262 | 11 | 15 | 497 | 19 | 553 | 1.88e-123 | 372 |
MS.gene068432.t1 | MTR_8g007515 | 50.932 | 322 | 155 | 2 | 13 | 331 | 9 | 330 | 3.80e-108 | 333 |
MS.gene068432.t1 | MTR_8g007515 | 39.053 | 169 | 100 | 3 | 330 | 497 | 390 | 556 | 1.09e-34 | 137 |
MS.gene068432.t1 | MTR_2g082050 | 34.825 | 514 | 217 | 10 | 43 | 495 | 1 | 457 | 1.01e-93 | 292 |
MS.gene068432.t1 | MTR_7g057340 | 66.667 | 168 | 56 | 0 | 330 | 497 | 5 | 172 | 2.67e-82 | 253 |
MS.gene068432.t1 | MTR_4g045810 | 30.347 | 547 | 309 | 8 | 13 | 495 | 41 | 579 | 1.98e-80 | 261 |
MS.gene068432.t1 | MTR_2g089130 | 30.847 | 496 | 266 | 9 | 44 | 475 | 62 | 544 | 4.61e-76 | 249 |
MS.gene068432.t1 | MTR_7g057390 | 64.286 | 168 | 57 | 1 | 330 | 497 | 5 | 169 | 1.17e-75 | 235 |
MS.gene068432.t1 | MTR_2g064425 | 43.438 | 320 | 173 | 5 | 17 | 334 | 53 | 366 | 2.01e-75 | 244 |
MS.gene068432.t1 | MTR_2g064425 | 43.438 | 320 | 173 | 5 | 17 | 334 | 53 | 366 | 1.07e-73 | 244 |
MS.gene068432.t1 | MTR_2g089120 | 40.532 | 301 | 164 | 4 | 49 | 346 | 67 | 355 | 9.94e-70 | 233 |
MS.gene068432.t1 | MTR_8g057020 | 37.574 | 338 | 203 | 5 | 10 | 346 | 48 | 378 | 1.12e-67 | 228 |
MS.gene068432.t1 | MTR_2g064425 | 40.625 | 320 | 167 | 6 | 17 | 334 | 53 | 351 | 3.62e-65 | 217 |
MS.gene068432.t1 | MTR_2g064425 | 40.625 | 320 | 167 | 6 | 17 | 334 | 53 | 351 | 1.54e-63 | 216 |
MS.gene068432.t1 | MTR_2g065450 | 36.420 | 324 | 196 | 4 | 10 | 331 | 51 | 366 | 1.01e-60 | 209 |
MS.gene068432.t1 | MTR_5g094530 | 70.000 | 130 | 35 | 2 | 166 | 292 | 1 | 129 | 2.29e-55 | 184 |
MS.gene068432.t1 | MTR_3g465090 | 27.515 | 487 | 287 | 8 | 54 | 475 | 13 | 498 | 1.91e-49 | 177 |
MS.gene068432.t1 | MTR_7g050990 | 65.909 | 132 | 36 | 1 | 200 | 331 | 28 | 150 | 3.46e-49 | 181 |
MS.gene068432.t1 | MTR_4g092020 | 35.417 | 288 | 179 | 3 | 44 | 331 | 64 | 344 | 5.96e-49 | 177 |
MS.gene068432.t1 | MTR_4g092020 | 30.178 | 169 | 113 | 2 | 330 | 495 | 403 | 569 | 2.67e-18 | 88.2 |
MS.gene068432.t1 | MTR_7g010710 | 30.836 | 347 | 231 | 6 | 1 | 344 | 1 | 341 | 6.87e-48 | 174 |
MS.gene068432.t1 | MTR_7g010710 | 27.835 | 194 | 134 | 2 | 301 | 494 | 365 | 552 | 2.67e-16 | 82.0 |
MS.gene068432.t1 | MTR_3g063170 | 27.010 | 485 | 282 | 10 | 54 | 470 | 13 | 493 | 8.15e-48 | 173 |
MS.gene068432.t1 | MTR_6g064980 | 27.071 | 495 | 289 | 10 | 54 | 480 | 13 | 503 | 2.18e-47 | 172 |
MS.gene068432.t1 | MTR_4g092010 | 35.000 | 280 | 176 | 4 | 55 | 331 | 61 | 337 | 3.48e-47 | 172 |
MS.gene068432.t1 | MTR_4g092010 | 25.455 | 165 | 115 | 3 | 330 | 489 | 395 | 556 | 4.42e-13 | 72.0 |
MS.gene068432.t1 | MTR_2g010960 | 33.219 | 292 | 183 | 3 | 47 | 331 | 9 | 295 | 1.18e-46 | 170 |
MS.gene068432.t1 | MTR_2g010960 | 27.219 | 169 | 110 | 5 | 330 | 488 | 353 | 518 | 4.85e-11 | 65.5 |
MS.gene068432.t1 | MTR_3g063120 | 26.273 | 491 | 292 | 10 | 68 | 491 | 1 | 488 | 3.13e-46 | 168 |
MS.gene068432.t1 | MTR_3g063140 | 26.735 | 490 | 287 | 10 | 54 | 475 | 13 | 498 | 9.44e-46 | 167 |
MS.gene068432.t1 | MTR_3g015080 | 47.024 | 168 | 51 | 2 | 330 | 497 | 5 | 134 | 2.83e-44 | 152 |
MS.gene068432.t1 | MTR_3g063160 | 32.014 | 278 | 184 | 5 | 54 | 328 | 13 | 288 | 5.73e-37 | 138 |
MS.gene068432.t1 | MTR_3g052120 | 30.961 | 281 | 189 | 5 | 54 | 331 | 13 | 291 | 1.95e-35 | 139 |
MS.gene068432.t1 | MTR_3g052120 | 29.518 | 166 | 111 | 4 | 330 | 491 | 349 | 512 | 7.36e-13 | 71.2 |
MS.gene068432.t1 | MTR_6g065040 | 25.445 | 393 | 223 | 8 | 145 | 470 | 2 | 391 | 2.97e-33 | 130 |
MS.gene068432.t1 | MTR_2g064295 | 28.975 | 283 | 178 | 6 | 70 | 331 | 256 | 536 | 3.32e-27 | 116 |
MS.gene068432.t1 | MTR_3g058160 | 28.975 | 283 | 178 | 6 | 70 | 331 | 65 | 345 | 6.92e-26 | 111 |
MS.gene068432.t1 | MTR_3g058160 | 28.975 | 283 | 178 | 6 | 70 | 331 | 256 | 536 | 1.03e-25 | 111 |
MS.gene068432.t1 | MTR_3g058160 | 28.975 | 283 | 178 | 6 | 70 | 331 | 269 | 549 | 1.05e-25 | 111 |
MS.gene068432.t1 | MTR_3g058160 | 28.975 | 283 | 178 | 6 | 70 | 331 | 276 | 556 | 1.08e-25 | 111 |
MS.gene068432.t1 | MTR_7g011663 | 29.927 | 274 | 160 | 6 | 68 | 310 | 344 | 616 | 2.14e-24 | 107 |
MS.gene068432.t1 | MTR_7g094970 | 26.909 | 275 | 169 | 6 | 68 | 313 | 206 | 477 | 7.53e-24 | 105 |
MS.gene068432.t1 | MTR_2g012870 | 27.072 | 362 | 222 | 13 | 1 | 331 | 182 | 532 | 1.76e-23 | 104 |
MS.gene068432.t1 | MTR_3g058160 | 27.632 | 304 | 176 | 7 | 70 | 331 | 276 | 577 | 4.00e-23 | 103 |
MS.gene068432.t1 | MTR_7g011770 | 26.667 | 405 | 240 | 14 | 68 | 418 | 240 | 641 | 5.86e-22 | 100 |
MS.gene068432.t1 | MTR_5g030050 | 28.030 | 264 | 157 | 7 | 73 | 312 | 3 | 257 | 4.92e-21 | 94.0 |
MS.gene068432.t1 | MTR_2g012900 | 24.731 | 372 | 232 | 14 | 1 | 331 | 182 | 546 | 1.14e-20 | 96.3 |
MS.gene068432.t1 | MTR_5g081730 | 36.364 | 110 | 65 | 1 | 153 | 257 | 2 | 111 | 1.97e-12 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068432.t1 | AT5G23960 | 35.805 | 553 | 279 | 12 | 13 | 497 | 3 | 547 | 2.62e-115 | 351 |
MS.gene068432.t1 | AT5G23960 | 35.753 | 551 | 280 | 11 | 13 | 497 | 3 | 545 | 6.45e-115 | 350 |
MS.gene068432.t1 | AT3G14520 | 32.902 | 541 | 294 | 7 | 22 | 497 | 68 | 604 | 4.49e-101 | 316 |
MS.gene068432.t1 | AT1G70080 | 34.111 | 557 | 298 | 12 | 8 | 497 | 57 | 611 | 5.10e-97 | 305 |
MS.gene068432.t1 | AT3G14490 | 33.945 | 545 | 293 | 7 | 17 | 497 | 60 | 601 | 1.58e-95 | 301 |
MS.gene068432.t1 | AT1G31950 | 31.752 | 548 | 292 | 9 | 22 | 497 | 70 | 607 | 1.31e-94 | 299 |
MS.gene068432.t1 | AT1G31950 | 31.978 | 541 | 299 | 8 | 22 | 497 | 70 | 606 | 4.74e-94 | 298 |
MS.gene068432.t1 | AT4G15870 | 32.955 | 528 | 295 | 9 | 25 | 497 | 75 | 598 | 2.85e-92 | 293 |
MS.gene068432.t1 | AT3G14540 | 32.902 | 541 | 294 | 9 | 22 | 497 | 65 | 601 | 1.75e-91 | 291 |
MS.gene068432.t1 | AT3G32030 | 31.296 | 540 | 304 | 8 | 22 | 497 | 68 | 604 | 2.29e-91 | 291 |
MS.gene068432.t1 | AT3G29410 | 32.103 | 542 | 305 | 7 | 17 | 497 | 64 | 603 | 5.20e-90 | 287 |
MS.gene068432.t1 | AT4G20210 | 31.752 | 548 | 302 | 9 | 17 | 497 | 58 | 600 | 5.73e-90 | 287 |
MS.gene068432.t1 | AT4G13300 | 31.911 | 539 | 297 | 10 | 25 | 497 | 20 | 554 | 1.57e-89 | 284 |
MS.gene068432.t1 | AT3G29410 | 32.200 | 500 | 276 | 7 | 59 | 497 | 1 | 498 | 3.22e-84 | 269 |
MS.gene068432.t1 | AT1G33750 | 31.402 | 535 | 302 | 8 | 24 | 497 | 73 | 603 | 9.64e-84 | 271 |
MS.gene068432.t1 | AT4G13280 | 33.268 | 508 | 297 | 11 | 27 | 497 | 22 | 524 | 1.99e-83 | 268 |
MS.gene068432.t1 | AT4G13280 | 31.285 | 537 | 299 | 10 | 27 | 497 | 22 | 554 | 3.68e-83 | 268 |
MS.gene068432.t1 | AT3G29190 | 29.672 | 519 | 290 | 9 | 48 | 497 | 89 | 601 | 9.32e-80 | 260 |
MS.gene068432.t1 | AT4G20230 | 29.795 | 537 | 304 | 11 | 25 | 493 | 70 | 601 | 2.99e-77 | 254 |
MS.gene068432.t1 | AT4G20230 | 29.795 | 537 | 304 | 11 | 25 | 493 | 82 | 613 | 4.66e-77 | 253 |
MS.gene068432.t1 | AT2G23230 | 29.945 | 541 | 310 | 10 | 16 | 492 | 55 | 590 | 3.05e-75 | 248 |
MS.gene068432.t1 | AT1G31950 | 39.130 | 322 | 174 | 5 | 22 | 331 | 70 | 381 | 2.63e-74 | 244 |
MS.gene068432.t1 | AT3G14540 | 36.543 | 405 | 227 | 9 | 22 | 417 | 65 | 448 | 5.93e-74 | 242 |
MS.gene068432.t1 | AT1G66020 | 28.755 | 546 | 321 | 8 | 17 | 497 | 56 | 598 | 1.69e-72 | 241 |
MS.gene068432.t1 | AT3G29110 | 31.066 | 544 | 307 | 12 | 17 | 495 | 55 | 595 | 2.15e-72 | 241 |
MS.gene068432.t1 | AT1G48820 | 29.637 | 523 | 291 | 10 | 17 | 490 | 63 | 557 | 1.09e-71 | 238 |
MS.gene068432.t1 | AT5G44630 | 29.725 | 545 | 313 | 12 | 18 | 495 | 14 | 555 | 2.28e-71 | 237 |
MS.gene068432.t1 | AT4G20200 | 30.754 | 517 | 287 | 12 | 48 | 497 | 92 | 604 | 6.66e-70 | 234 |
MS.gene068432.t1 | AT1G48800 | 28.205 | 546 | 317 | 10 | 17 | 493 | 63 | 602 | 1.50e-69 | 233 |
MS.gene068432.t1 | AT2G24210 | 28.265 | 559 | 323 | 11 | 10 | 497 | 39 | 590 | 2.45e-66 | 224 |
MS.gene068432.t1 | AT4G16730 | 36.306 | 314 | 186 | 5 | 42 | 346 | 17 | 325 | 9.24e-64 | 216 |
MS.gene068432.t1 | AT4G16730 | 23.695 | 249 | 170 | 9 | 252 | 495 | 304 | 537 | 4.08e-12 | 68.9 |
MS.gene068432.t1 | AT1G61680 | 28.457 | 499 | 286 | 7 | 54 | 487 | 77 | 569 | 7.09e-62 | 212 |
MS.gene068432.t1 | AT4G16740 | 34.012 | 344 | 206 | 8 | 14 | 346 | 23 | 356 | 4.60e-61 | 205 |
MS.gene068432.t1 | AT2G23230 | 37.037 | 324 | 191 | 7 | 16 | 331 | 55 | 373 | 1.90e-60 | 209 |
MS.gene068432.t1 | AT2G23230 | 28.834 | 163 | 115 | 1 | 331 | 492 | 433 | 595 | 1.10e-17 | 86.7 |
MS.gene068432.t1 | AT4G16730 | 37.102 | 283 | 165 | 4 | 73 | 346 | 1 | 279 | 4.60e-60 | 205 |
MS.gene068432.t1 | AT4G16730 | 25.146 | 171 | 125 | 2 | 330 | 497 | 323 | 493 | 4.29e-12 | 68.6 |
MS.gene068432.t1 | AT4G16740 | 34.545 | 330 | 196 | 7 | 14 | 332 | 23 | 343 | 1.43e-59 | 201 |
MS.gene068432.t1 | AT4G16740 | 34.545 | 330 | 196 | 7 | 14 | 332 | 23 | 343 | 1.43e-59 | 201 |
MS.gene068432.t1 | AT1G66020 | 34.328 | 335 | 212 | 5 | 17 | 346 | 56 | 387 | 1.87e-59 | 202 |
MS.gene068432.t1 | AT4G16740 | 33.815 | 346 | 208 | 8 | 12 | 346 | 21 | 356 | 5.15e-59 | 204 |
MS.gene068432.t1 | AT1G61680 | 28.056 | 499 | 281 | 8 | 54 | 487 | 77 | 562 | 3.21e-58 | 202 |
MS.gene068432.t1 | AT3G25820 | 31.953 | 338 | 220 | 7 | 15 | 346 | 45 | 378 | 3.92e-56 | 194 |
MS.gene068432.t1 | AT3G25830 | 31.953 | 338 | 220 | 7 | 15 | 346 | 45 | 378 | 8.90e-55 | 194 |
MS.gene068432.t1 | AT3G25820 | 31.953 | 338 | 220 | 7 | 15 | 346 | 45 | 378 | 8.90e-55 | 194 |
MS.gene068432.t1 | AT3G25820 | 32.000 | 325 | 212 | 6 | 15 | 333 | 45 | 366 | 2.47e-54 | 187 |
MS.gene068432.t1 | AT3G25820 | 32.000 | 325 | 212 | 6 | 15 | 333 | 45 | 366 | 2.47e-54 | 187 |
MS.gene068432.t1 | AT3G25810 | 32.286 | 350 | 213 | 10 | 15 | 350 | 45 | 384 | 4.22e-48 | 175 |
MS.gene068432.t1 | AT3G25810 | 25.287 | 174 | 124 | 3 | 330 | 497 | 424 | 597 | 2.61e-11 | 66.6 |
MS.gene068432.t1 | AT5G48110 | 49.153 | 118 | 59 | 1 | 215 | 331 | 1 | 118 | 3.76e-31 | 123 |
MS.gene068432.t1 | AT5G48110 | 32.796 | 186 | 118 | 5 | 315 | 497 | 158 | 339 | 9.43e-29 | 116 |
MS.gene068432.t1 | AT4G02780 | 28.846 | 260 | 157 | 5 | 68 | 300 | 329 | 587 | 2.58e-23 | 104 |
MS.gene068432.t1 | AT1G79460 | 28.523 | 298 | 172 | 11 | 70 | 338 | 274 | 559 | 1.86e-21 | 98.6 |
MS.gene068432.t1 | AT1G61120 | 26.523 | 279 | 182 | 6 | 71 | 331 | 289 | 562 | 1.59e-17 | 86.3 |
Find 82 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCTCTTGCTGTGCTATTT+AGG | 0.103456 | 6.3:-64274879 | MS.gene068432:CDS |
TCTACTTGCATTGGCAAAAT+TGG | 0.119753 | 6.3:-64273913 | MS.gene068432:CDS |
TTCTCTTGCTGTGCTATTTA+GGG | 0.189824 | 6.3:-64274878 | MS.gene068432:CDS |
TCCTTATGCTTCAGATTCTA+TGG | 0.234780 | 6.3:-64275466 | MS.gene068432:intron |
TTTCCTTGCTTGAGAATATT+GGG | 0.241792 | 6.3:+64273640 | None:intergenic |
ATGCAAGTAGAATTTCATTA+TGG | 0.248221 | 6.3:+64273925 | None:intergenic |
AGCCTACATCAAAAGGAATT+TGG | 0.257080 | 6.3:-64273873 | MS.gene068432:CDS |
TACAAGAGTTATGTTCAAAA+TGG | 0.269625 | 6.3:-64274928 | MS.gene068432:CDS |
CTGCTATACATTGCAGGCTT+AGG | 0.276774 | 6.3:-64272157 | MS.gene068432:CDS |
AGACGAAATTAATCAAGTTT+TGG | 0.301364 | 6.3:-64274959 | MS.gene068432:CDS |
GTCATCAATGTATGATAAAA+TGG | 0.310334 | 6.3:+64273598 | None:intergenic |
CAGATTTCCACCCTAGCGTT+TGG | 0.311610 | 6.3:-64275503 | MS.gene068432:CDS |
AGATTTCCACCCTAGCGTTT+GGG | 0.325288 | 6.3:-64275502 | MS.gene068432:CDS |
TGCAAAACCGATTTCTCATT+AGG | 0.335406 | 6.3:+64275537 | None:intergenic |
TGAGGGAATATGATTTGAAT+AGG | 0.340079 | 6.3:-64271955 | MS.gene068432:CDS |
TTCCTTGCTCGTCCTTGAAT+TGG | 0.345275 | 6.3:+64274201 | None:intergenic |
GAGTAGTAGAATGTTGCTTT+TGG | 0.347068 | 6.3:-64273685 | MS.gene068432:CDS |
ATGCTGCTGCTATACATTGC+AGG | 0.354080 | 6.3:-64272163 | MS.gene068432:CDS |
TGTGCCGCAGTATTCATATC+AGG | 0.354426 | 6.3:+64275099 | None:intergenic |
CATCAATCCTAATGAGAAAT+CGG | 0.381109 | 6.3:-64275544 | MS.gene068432:CDS |
GATTGATTCAATATGTCGTT+TGG | 0.383797 | 6.3:-64275001 | MS.gene068432:CDS |
TGCAAGTAGAATTTCATTAT+GGG | 0.387262 | 6.3:+64273926 | None:intergenic |
CGTACTTAGAATGTTATATG+AGG | 0.388941 | 6.3:-64271973 | MS.gene068432:CDS |
GGATGAATCTTGCTCATAGA+TGG | 0.390050 | 6.3:+64273947 | None:intergenic |
AATAAATACTCAAATTTCTA+CGG | 0.417455 | 6.3:+64271721 | None:intergenic |
TGCATGTACTCCTCTGTTGT+TGG | 0.418606 | 6.3:+64272302 | None:intergenic |
AAAAGAAAATTGACAACGCT+TGG | 0.444020 | 6.3:-64271910 | MS.gene068432:CDS |
TTCTGGTCACCTTGAGTCCA+TGG | 0.446304 | 6.3:-64274069 | MS.gene068432:CDS |
TGCTATACATTGCAGGCTTA+GGG | 0.448464 | 6.3:-64272156 | MS.gene068432:CDS |
ATTGATTCAATATGTCGTTT+GGG | 0.450241 | 6.3:-64275000 | MS.gene068432:CDS |
GCTCCAAAGCCTACATCAAA+AGG | 0.450495 | 6.3:-64273880 | MS.gene068432:CDS |
TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6.3:-64272243 | MS.gene068432:CDS |
TAATGAAATTCTACTTGCAT+TGG | 0.460272 | 6.3:-64273922 | MS.gene068432:CDS |
ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6.3:-64272242 | MS.gene068432:CDS |
GATGACACATATGATGCATA+TGG | 0.467097 | 6.3:-64273581 | MS.gene068432:CDS |
AAACAGTTTGAGCAGAAAAG+AGG | 0.472567 | 6.3:-64272007 | MS.gene068432:intron |
GAGGGAATATGATTTGAATA+GGG | 0.475500 | 6.3:-64271954 | MS.gene068432:CDS |
ATAAATACTCAAATTTCTAC+GGG | 0.477038 | 6.3:+64271722 | None:intergenic |
TTGCAAGAGAAGGACTCAAT+CGG | 0.484754 | 6.3:+64274042 | None:intergenic |
CGCTTGGAAAGATATAAATC+AGG | 0.490061 | 6.3:-64271894 | MS.gene068432:CDS |
TTGAGAACACACGTAAGAAT+AGG | 0.491590 | 6.3:+64271842 | None:intergenic |
ATATTGGGGCTCAAAATATA+CGG | 0.495144 | 6.3:+64273655 | None:intergenic |
CTGTGCTATTTAGGGTGTTG+AGG | 0.502767 | 6.3:-64274870 | MS.gene068432:CDS |
ACCATAGAATCTGAAGCATA+AGG | 0.512185 | 6.3:+64275465 | None:intergenic |
CATGGACTTTACGTTTCACC+TGG | 0.512238 | 6.3:-64274844 | MS.gene068432:intron |
AGGACTCAATCGGGTGGCCA+TGG | 0.512884 | 6.3:+64274052 | None:intergenic |
AGATGTGTTCAACCAATTCA+AGG | 0.513117 | 6.3:-64274213 | MS.gene068432:CDS |
CGACAAAAGACATCTTTGAC+TGG | 0.519009 | 6.3:-64272211 | MS.gene068432:CDS |
TAACTTCTTGCCACTAGCCT+AGG | 0.521919 | 6.3:+64273975 | None:intergenic |
GCCTCACATATGATGGTTCA+TGG | 0.522278 | 6.3:-64274125 | MS.gene068432:CDS |
TAAGAAGTCGTAGCCAACAC+TGG | 0.522936 | 6.3:+64272254 | None:intergenic |
ATATAGGTGGTGGAAGGAGT+TGG | 0.524102 | 6.3:-64273741 | MS.gene068432:intron |
AACAATGGTCAGAGATGTTG+AGG | 0.533818 | 6.3:-64274168 | MS.gene068432:CDS |
TTCCTTGCTTGAGAATATTG+GGG | 0.534381 | 6.3:+64273641 | None:intergenic |
TGCAAGAGAAGGACTCAATC+GGG | 0.546913 | 6.3:+64274043 | None:intergenic |
AGCCCCAATATTCTCAAGCA+AGG | 0.547455 | 6.3:-64273643 | MS.gene068432:CDS |
TTTAGGGTGTTGAGGCAACA+TGG | 0.552007 | 6.3:-64274862 | MS.gene068432:CDS |
TTTACTTGTGTTGCAAGAGA+AGG | 0.558925 | 6.3:+64274032 | None:intergenic |
ATCGGGTGGCCATGGACTCA+AGG | 0.566605 | 6.3:+64274060 | None:intergenic |
GTATGAAGCCTCACATATGA+TGG | 0.567934 | 6.3:-64274132 | MS.gene068432:CDS |
ATAGGTAACGGAACATCAGT+TGG | 0.569838 | 6.3:+64271860 | None:intergenic |
ATCAAGTGGTTACCCAGTGT+TGG | 0.570889 | 6.3:-64272267 | MS.gene068432:CDS |
ATAGCACAGCAAGAGAATGA+AGG | 0.572946 | 6.3:+64274884 | None:intergenic |
GTACTTAGAATGTTATATGA+GGG | 0.573263 | 6.3:-64271972 | MS.gene068432:CDS |
TTGGCTACGACTTCTTACAT+TGG | 0.586299 | 6.3:-64272248 | MS.gene068432:CDS |
CTTTATATATAGGTGGTGGA+AGG | 0.588928 | 6.3:-64273747 | MS.gene068432:intron |
ACTACTCTATCTCGTGCATA+CGG | 0.590301 | 6.3:+64273701 | None:intergenic |
CACATATCAACAATATCAAG+TGG | 0.594145 | 6.3:-64272281 | MS.gene068432:CDS |
GATTTCCACCCTAGCGTTTG+GGG | 0.596026 | 6.3:-64275501 | MS.gene068432:CDS |
AATCTCCCCAAACGCTAGGG+TGG | 0.601357 | 6.3:+64275496 | None:intergenic |
GATAACTACACACACTCTGA+CGG | 0.610210 | 6.3:-64271782 | MS.gene068432:CDS |
AAGAAGTCGTAGCCAACACT+GGG | 0.613680 | 6.3:+64272255 | None:intergenic |
AACCAATTCAAGGACGAGCA+AGG | 0.615624 | 6.3:-64274203 | MS.gene068432:CDS |
AGGAAACTTCAGTGAAACAA+TGG | 0.623863 | 6.3:-64274183 | MS.gene068432:CDS |
GACAAAAGACATCTTTGACT+GGG | 0.626667 | 6.3:-64272210 | MS.gene068432:CDS |
ACCATGAACCATCATATGTG+AGG | 0.634158 | 6.3:+64274124 | None:intergenic |
ACAATGGTCAGAGATGTTGA+GGG | 0.666287 | 6.3:-64274167 | MS.gene068432:CDS |
GGATGAAATTGTGTCAAGCG+AGG | 0.675331 | 6.3:-64272135 | MS.gene068432:intron |
ACACACGTAAGAATAGGTAA+CGG | 0.686084 | 6.3:+64271848 | None:intergenic |
AAGAGAAGGACTCAATCGGG+TGG | 0.695745 | 6.3:+64274046 | None:intergenic |
GGAACCTGATATGAATACTG+CGG | 0.696636 | 6.3:-64275103 | MS.gene068432:CDS |
TAACTATATACCAACAACAG+AGG | 0.703519 | 6.3:-64272312 | MS.gene068432:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATAAAATAAACGTTAAT+AGG | + | chr6.3:64274894-64274913 | None:intergenic | 10.0% |
!! | TGATTATAAAGTAATATTAA+TGG | - | chr6.3:64272873-64272892 | MS.gene068432:intron | 10.0% |
!!! | ATTTCATTTTTAATTTTGTA+TGG | - | chr6.3:64274288-64274307 | MS.gene068432:intron | 10.0% |
!!! | CATTAATTTTTATTCTTTTA+TGG | + | chr6.3:64274665-64274684 | None:intergenic | 10.0% |
!!! | CATTTTTTTTGTTTTTAATT+TGG | - | chr6.3:64272503-64272522 | MS.gene068432:intron | 10.0% |
!!! | TATTTTTTGTCTTTATATAT+AGG | - | chr6.3:64273534-64273553 | MS.gene068432:intron | 10.0% |
!!! | TTTTTACTAAAAAAAATTAC+AGG | + | chr6.3:64272675-64272694 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAGACCATTTA+AGG | + | chr6.3:64271934-64271953 | None:intergenic | 15.0% |
!! | ACAAATTGATAAACTAAAAA+AGG | - | chr6.3:64272212-64272231 | MS.gene068432:CDS | 15.0% |
!! | ATATATATTATGAAAAGTGA+TGG | - | chr6.3:64271878-64271897 | MS.gene068432:CDS | 15.0% |
!! | GATATATGTATTTATATTGA+TGG | + | chr6.3:64274350-64274369 | None:intergenic | 15.0% |
!! | TAAATAAATAGTATAATCCT+GGG | + | chr6.3:64272045-64272064 | None:intergenic | 15.0% |
!! | TAAATTGAGTTCAAAAAATA+AGG | - | chr6.3:64273494-64273513 | MS.gene068432:intron | 15.0% |
!! | TAATATGAATGTCTAAAAAA+TGG | - | chr6.3:64272635-64272654 | MS.gene068432:intron | 15.0% |
!! | TTAACAACATTTAATTACAT+AGG | - | chr6.3:64274852-64274871 | MS.gene068432:CDS | 15.0% |
!! | TTGAGTAAAACAAATTATAT+TGG | - | chr6.3:64272534-64272553 | MS.gene068432:intron | 15.0% |
!! | TTGTAGAATTAATATTACAA+AGG | + | chr6.3:64274769-64274788 | None:intergenic | 15.0% |
!!! | AATCATTTTTACATCTTTTT+AGG | - | chr6.3:64274389-64274408 | MS.gene068432:intron | 15.0% |
!!! | ATACTTTTATATTTTGATGT+AGG | + | chr6.3:64273472-64273491 | None:intergenic | 15.0% |
!!! | TTTAATTACATAGGTTTTTT+TGG | - | chr6.3:64274861-64274880 | MS.gene068432:CDS | 15.0% |
!! | AATATTAATGGTATACATGT+AGG | - | chr6.3:64272885-64272904 | MS.gene068432:intron | 20.0% |
!! | AATTGATAAACTAAAAAAGG+AGG | - | chr6.3:64272215-64272234 | MS.gene068432:CDS | 20.0% |
!! | ATAAAGACAAAAAATAGTAC+AGG | + | chr6.3:64273530-64273549 | None:intergenic | 20.0% |
!! | GAGAATAATTAAAAGAAATG+AGG | + | chr6.3:64272812-64272831 | None:intergenic | 20.0% |
!! | GTAAATAAATAGTATAATCC+TGG | + | chr6.3:64272046-64272065 | None:intergenic | 20.0% |
!! | TGTAAAAAACTTATTATCCA+TGG | - | chr6.3:64274528-64274547 | MS.gene068432:intron | 20.0% |
!!! | AATCAAAATGATTTTTAGGT+GGG | - | chr6.3:64274029-64274048 | MS.gene068432:CDS | 20.0% |
!!! | ATTGTTGTTTAATATTATCG+TGG | - | chr6.3:64273037-64273056 | MS.gene068432:intron | 20.0% |
!!! | TATAATAAGTTGACATAATG+AGG | - | chr6.3:64275208-64275227 | MS.gene068432:intron | 20.0% |
!!! | TATCTTGACATTTTAATTAG+TGG | - | chr6.3:64274795-64274814 | MS.gene068432:intron | 20.0% |
!!! | TCATGAAGATATATTTTTCT+TGG | + | chr6.3:64274450-64274469 | None:intergenic | 20.0% |
!!! | TTCTTTTAACAATAGAGTAA+TGG | - | chr6.3:64273996-64274015 | MS.gene068432:CDS | 20.0% |
!!! | TTGCAATCAAAATGATTTTT+AGG | - | chr6.3:64274025-64274044 | MS.gene068432:CDS | 20.0% |
!!! | TTTTTGTCTTTATATATAGG+TGG | - | chr6.3:64273537-64273556 | MS.gene068432:intron | 20.0% |
! | AAGAAAAATGTATCATCATG+AGG | - | chr6.3:64274604-64274623 | MS.gene068432:intron | 25.0% |
! | AATTCTTTAAATCAACAGCA+AGG | - | chr6.3:64271853-64271872 | MS.gene068432:CDS | 25.0% |
! | ATGCAAGTAGAATTTCATTA+TGG | + | chr6.3:64273369-64273388 | None:intergenic | 25.0% |
! | ATGTGAACATTACATAGATA+AGG | + | chr6.3:64272789-64272808 | None:intergenic | 25.0% |
! | GTACTTAGAATGTTATATGA+GGG | - | chr6.3:64275319-64275338 | MS.gene068432:intron | 25.0% |
! | GTCATCAATGTATGATAAAA+TGG | + | chr6.3:64273696-64273715 | None:intergenic | 25.0% |
! | TAATGAAATTCTACTTGCAT+TGG | - | chr6.3:64273369-64273388 | MS.gene068432:intron | 25.0% |
! | TACAAGAGTTATGTTCAAAA+TGG | - | chr6.3:64272363-64272382 | MS.gene068432:intron | 25.0% |
! | TGCAAAAAACTTATTATCCA+TGG | - | chr6.3:64274683-64274702 | MS.gene068432:intron | 25.0% |
! | TGCAAGTAGAATTTCATTAT+GGG | + | chr6.3:64273368-64273387 | None:intergenic | 25.0% |
!! | AATTTTGTATGGTTATCGAA+GGG | - | chr6.3:64274299-64274318 | MS.gene068432:intron | 25.0% |
!! | AGACGAAATTAATCAAGTTT+TGG | - | chr6.3:64272332-64272351 | MS.gene068432:intron | 25.0% |
!! | ATGACACTTAATTGTTGTTA+TGG | + | chr6.3:64272123-64272142 | None:intergenic | 25.0% |
!! | ATTGATTCAATATGTCGTTT+GGG | - | chr6.3:64272291-64272310 | MS.gene068432:CDS | 25.0% |
!! | GTAATATTTGACTTTGTCAT+GGG | - | chr6.3:64272606-64272625 | MS.gene068432:intron | 25.0% |
!! | TAAGTTGAGATATATATACC+AGG | + | chr6.3:64272468-64272487 | None:intergenic | 25.0% |
!! | TAATTTTGTATGGTTATCGA+AGG | - | chr6.3:64274298-64274317 | MS.gene068432:intron | 25.0% |
!! | TGAATTAGAACTTTTTACTC+AGG | - | chr6.3:64273742-64273761 | MS.gene068432:intron | 25.0% |
!!! | AACTCTTACTTCTTTTAAGA+AGG | + | chr6.3:64274175-64274194 | None:intergenic | 25.0% |
!!! | ACTCTTACTTCTTTTAAGAA+GGG | + | chr6.3:64274174-64274193 | None:intergenic | 25.0% |
!!! | ATTGTTTCATCTCTAAAGTT+TGG | + | chr6.3:64273825-64273844 | None:intergenic | 25.0% |
!!! | CAATCAAAATGATTTTTAGG+TGG | - | chr6.3:64274028-64274047 | MS.gene068432:CDS | 25.0% |
!!! | TATCCATGGTTTTATTAACT+CGG | - | chr6.3:64274542-64274561 | MS.gene068432:intron | 25.0% |
!!! | TGTATGTTTTGAATACATAC+AGG | - | chr6.3:64272167-64272186 | MS.gene068432:CDS | 25.0% |
AAAAAATTACAGGCTAACAG+TGG | + | chr6.3:64272665-64272684 | None:intergenic | 30.0% | |
AAAAGAAAATTGACAACGCT+TGG | - | chr6.3:64275381-64275400 | MS.gene068432:intron | 30.0% | |
AATTTACCCATCTTCAATCT+TGG | - | chr6.3:64273908-64273927 | MS.gene068432:CDS | 30.0% | |
ACGCATAACAAAACCTTAAA+TGG | - | chr6.3:64271918-64271937 | MS.gene068432:CDS | 30.0% | |
ATATTGGGGCTCAAAATATA+CGG | + | chr6.3:64273639-64273658 | None:intergenic | 30.0% | |
CACATATCAACAATATCAAG+TGG | - | chr6.3:64275010-64275029 | MS.gene068432:CDS | 30.0% | |
CATCAATCCTAATGAGAAAT+CGG | - | chr6.3:64271747-64271766 | MS.gene068432:CDS | 30.0% | |
CGTACTTAGAATGTTATATG+AGG | - | chr6.3:64275318-64275337 | MS.gene068432:intron | 30.0% | |
CTAATATGTATCCGATCAAA+CGG | + | chr6.3:64272760-64272779 | None:intergenic | 30.0% | |
GAACTAAGTTCATATAACCA+TGG | + | chr6.3:64274703-64274722 | None:intergenic | 30.0% | |
GAGGGAATATGATTTGAATA+GGG | - | chr6.3:64275337-64275356 | MS.gene068432:intron | 30.0% | |
GGAATGAAACTTGATATTCT+AGG | - | chr6.3:64271966-64271985 | MS.gene068432:CDS | 30.0% | |
GGTTCATGGTGAAAAAATAT+TGG | - | chr6.3:64273180-64273199 | MS.gene068432:intron | 30.0% | |
TAACTATATACCAACAACAG+AGG | - | chr6.3:64274979-64274998 | MS.gene068432:CDS | 30.0% | |
TGAGGGAATATGATTTGAAT+AGG | - | chr6.3:64275336-64275355 | MS.gene068432:intron | 30.0% | |
TGGTGAAAAAATATTGGAAG+AGG | - | chr6.3:64273186-64273205 | MS.gene068432:intron | 30.0% | |
TTGTCTTTATATATAGGTGG+TGG | - | chr6.3:64273540-64273559 | MS.gene068432:CDS | 30.0% | |
TTTCCTTGCTTGAGAATATT+GGG | + | chr6.3:64273654-64273673 | None:intergenic | 30.0% | |
! | AAAGTATCACCATAATGACT+TGG | - | chr6.3:64274424-64274443 | MS.gene068432:intron | 30.0% |
! | CGTAATATTTGACTTTGTCA+TGG | - | chr6.3:64272605-64272624 | MS.gene068432:intron | 30.0% |
! | GATTGATTCAATATGTCGTT+TGG | - | chr6.3:64272290-64272309 | MS.gene068432:CDS | 30.0% |
! | GTTGCTTTATAAATCACTCT+TGG | - | chr6.3:64274089-64274108 | MS.gene068432:CDS | 30.0% |
! | TTCCAAATTCCTTTTGATGT+AGG | + | chr6.3:64273423-64273442 | None:intergenic | 30.0% |
! | TTTCTTTTGGCATTCTTGAA+TGG | + | chr6.3:64275369-64275388 | None:intergenic | 30.0% |
! | TTTTCCTTGCTTGAGAATAT+TGG | + | chr6.3:64273655-64273674 | None:intergenic | 30.0% |
! | TTTTTACTCAGGCAATTGAA+AGG | - | chr6.3:64273753-64273772 | MS.gene068432:intron | 30.0% |
!! | AAGCGTTGTCAATTTTCTTT+TGG | + | chr6.3:64275382-64275401 | None:intergenic | 30.0% |
!! | CTCTTACTTCTTTTAAGAAG+GGG | + | chr6.3:64274173-64274192 | None:intergenic | 30.0% |
!!! | AATCAAGTTGACTTTTTCCA+TGG | + | chr6.3:64272274-64272293 | None:intergenic | 30.0% |
!!! | AGTAGTAGAATGTTGCTTTT+GGG | - | chr6.3:64273607-64273626 | MS.gene068432:CDS | 30.0% |
!!! | ATCAAGTTGACTTTTTCCAT+GGG | + | chr6.3:64272273-64272292 | None:intergenic | 30.0% |
AAACAGTTTGAGCAGAAAAG+AGG | - | chr6.3:64275284-64275303 | MS.gene068432:intron | 35.0% | |
AATCCATGCTTATATGAGTG+AGG | - | chr6.3:64274940-64274959 | MS.gene068432:CDS | 35.0% | |
AATCCTGGGCTAATATTAAG+TGG | + | chr6.3:64272031-64272050 | None:intergenic | 35.0% | |
ACACACGTAAGAATAGGTAA+CGG | + | chr6.3:64275446-64275465 | None:intergenic | 35.0% | |
ACGACTTCTTACATTGGAAT+GGG | - | chr6.3:64275049-64275068 | MS.gene068432:CDS | 35.0% | |
AGATGTGTTCAACCAATTCA+AGG | - | chr6.3:64273078-64273097 | MS.gene068432:intron | 35.0% | |
AGCCTACATCAAAAGGAATT+TGG | - | chr6.3:64273418-64273437 | MS.gene068432:intron | 35.0% | |
AGGAAACTTCAGTGAAACAA+TGG | - | chr6.3:64273108-64273127 | MS.gene068432:intron | 35.0% | |
CAACCGAGTTAATAAAACCA+TGG | + | chr6.3:64274548-64274567 | None:intergenic | 35.0% | |
CGCTTGGAAAGATATAAATC+AGG | - | chr6.3:64275397-64275416 | MS.gene068432:intron | 35.0% | |
GACAAAAGACATCTTTGACT+GGG | - | chr6.3:64275081-64275100 | MS.gene068432:CDS | 35.0% | |
GAGCAAGAAATGAAGAAAGA+AGG | - | chr6.3:64274129-64274148 | MS.gene068432:CDS | 35.0% | |
GATGACACATATGATGCATA+TGG | - | chr6.3:64273710-64273729 | MS.gene068432:CDS | 35.0% | |
TAAAGCAACTTCGTGTAATC+CGG | + | chr6.3:64274078-64274097 | None:intergenic | 35.0% | |
TACGACTTCTTACATTGGAA+TGG | - | chr6.3:64275048-64275067 | MS.gene068432:CDS | 35.0% | |
TAGCAACCAAGATTGAAGAT+GGG | + | chr6.3:64273917-64273936 | None:intergenic | 35.0% | |
TAGGTGGGATATTAATTGCT+TGG | - | chr6.3:64274044-64274063 | MS.gene068432:CDS | 35.0% | |
TCCTTATGCTTCAGATTCTA+TGG | - | chr6.3:64271825-64271844 | MS.gene068432:CDS | 35.0% | |
TGTTGTTATGGATCAACCTA+TGG | + | chr6.3:64272111-64272130 | None:intergenic | 35.0% | |
TTAGCAACCAAGATTGAAGA+TGG | + | chr6.3:64273918-64273937 | None:intergenic | 35.0% | |
TTCCTTGCTTGAGAATATTG+GGG | + | chr6.3:64273653-64273672 | None:intergenic | 35.0% | |
TTGAGAACACACGTAAGAAT+AGG | + | chr6.3:64275452-64275471 | None:intergenic | 35.0% | |
TTTACTTGTGTTGCAAGAGA+AGG | + | chr6.3:64273262-64273281 | None:intergenic | 35.0% | |
! | AAAAATATTGGAAGAGGCGT+TGG | - | chr6.3:64273192-64273211 | MS.gene068432:intron | 35.0% |
! | ACCATAGAATCTGAAGCATA+AGG | + | chr6.3:64271829-64271848 | None:intergenic | 35.0% |
! | ATTCCTTTTGATGTAGGCTT+TGG | + | chr6.3:64273417-64273436 | None:intergenic | 35.0% |
! | CTAGTCATCAAGTTTAGAGT+TGG | - | chr6.3:64273863-64273882 | MS.gene068432:CDS | 35.0% |
! | GCAGCAGCATTAACAATTTT+TGG | + | chr6.3:64275118-64275137 | None:intergenic | 35.0% |
! | TCTACTTGCATTGGCAAAAT+TGG | - | chr6.3:64273378-64273397 | MS.gene068432:intron | 35.0% |
! | TGCAAAACCGATTTCTCATT+AGG | + | chr6.3:64271757-64271776 | None:intergenic | 35.0% |
! | TTTTCTTGGCCAAGTCATTA+TGG | + | chr6.3:64274436-64274455 | None:intergenic | 35.0% |
! | TTTTGCTAAATGCAGTCCAT+AGG | - | chr6.3:64272092-64272111 | MS.gene068432:intron | 35.0% |
!! | ATTCTCTTGCTGTGCTATTT+AGG | - | chr6.3:64272412-64272431 | MS.gene068432:intron | 35.0% |
!! | CTTTATATATAGGTGGTGGA+AGG | - | chr6.3:64273544-64273563 | MS.gene068432:CDS | 35.0% |
!! | TTCTCTTGCTGTGCTATTTA+GGG | - | chr6.3:64272413-64272432 | MS.gene068432:intron | 35.0% |
!! | TTCTTTTAAGAAGGGGTCAA+GGG | + | chr6.3:64274166-64274185 | None:intergenic | 35.0% |
!!! | GAGTAGTAGAATGTTGCTTT+TGG | - | chr6.3:64273606-64273625 | MS.gene068432:CDS | 35.0% |
AAAAAATCTCCCCAAACGCT+AGG | + | chr6.3:64271802-64271821 | None:intergenic | 40.0% | |
AAAAATCTCCCCAAACGCTA+GGG | + | chr6.3:64271801-64271820 | None:intergenic | 40.0% | |
AACAATGGTCAGAGATGTTG+AGG | - | chr6.3:64273123-64273142 | MS.gene068432:intron | 40.0% | |
ACAATGGTCAGAGATGTTGA+GGG | - | chr6.3:64273124-64273143 | MS.gene068432:intron | 40.0% | |
ACCATGAACCATCATATGTG+AGG | + | chr6.3:64273170-64273189 | None:intergenic | 40.0% | |
ACTACTCTATCTCGTGCATA+CGG | + | chr6.3:64273593-64273612 | None:intergenic | 40.0% | |
ATAGCACAGCAAGAGAATGA+AGG | + | chr6.3:64272410-64272429 | None:intergenic | 40.0% | |
ATAGTTAGCATTCAGCCATC+TGG | + | chr6.3:64274966-64274985 | None:intergenic | 40.0% | |
CAACCACTTAATATTAGCCC+AGG | - | chr6.3:64272025-64272044 | MS.gene068432:intron | 40.0% | |
CGACAAAAGACATCTTTGAC+TGG | - | chr6.3:64275080-64275099 | MS.gene068432:CDS | 40.0% | |
CTCAAAAACAGAGAAACCCA+TGG | - | chr6.3:64272254-64272273 | MS.gene068432:CDS | 40.0% | |
CTGGGCTAATATTAAGTGGT+TGG | + | chr6.3:64272027-64272046 | None:intergenic | 40.0% | |
GATAACTACACACACTCTGA+CGG | - | chr6.3:64275509-64275528 | MS.gene068432:CDS | 40.0% | |
GGAACCTGATATGAATACTG+CGG | - | chr6.3:64272188-64272207 | MS.gene068432:CDS | 40.0% | |
GGATGAATCTTGCTCATAGA+TGG | + | chr6.3:64273347-64273366 | None:intergenic | 40.0% | |
GTATGAAGCCTCACATATGA+TGG | - | chr6.3:64273159-64273178 | MS.gene068432:intron | 40.0% | |
GTGGGATATTAATTGCTTGG+AGG | - | chr6.3:64274047-64274066 | MS.gene068432:CDS | 40.0% | |
TAATTGCTTGGAGGATCTTC+CGG | - | chr6.3:64274056-64274075 | MS.gene068432:CDS | 40.0% | |
TGCTATACATTGCAGGCTTA+GGG | - | chr6.3:64275135-64275154 | MS.gene068432:intron | 40.0% | |
TGGTTATCGAAGGGAAGTTT+AGG | - | chr6.3:64274308-64274327 | MS.gene068432:intron | 40.0% | |
TTGCAAGAGAAGGACTCAAT+CGG | + | chr6.3:64273252-64273271 | None:intergenic | 40.0% | |
TTGGCTACGACTTCTTACAT+TGG | - | chr6.3:64275043-64275062 | MS.gene068432:CDS | 40.0% | |
!! | AAGAGTGTCTTCCGTTTGAT+CGG | - | chr6.3:64272746-64272765 | MS.gene068432:intron | 40.0% |
!! | ATAGGTAACGGAACATCAGT+TGG | + | chr6.3:64275434-64275453 | None:intergenic | 40.0% |
!! | CAATCTCTCGCGTTTTATTG+AGG | - | chr6.3:64275469-64275488 | MS.gene068432:CDS | 40.0% |
!! | CTTCTTTTAAGAAGGGGTCA+AGG | + | chr6.3:64274167-64274186 | None:intergenic | 40.0% |
!! | GTGTTTCTGAAGTGCGAAAA+AGG | + | chr6.3:64272928-64272947 | None:intergenic | 40.0% |
AACCAATTCAAGGACGAGCA+AGG | - | chr6.3:64273088-64273107 | MS.gene068432:intron | 45.0% | |
AAGAAGTCGTAGCCAACACT+GGG | + | chr6.3:64275039-64275058 | None:intergenic | 45.0% | |
AGATTTCCACCCTAGCGTTT+GGG | - | chr6.3:64271789-64271808 | MS.gene068432:CDS | 45.0% | |
AGCCCCAATATTCTCAAGCA+AGG | - | chr6.3:64273648-64273667 | MS.gene068432:CDS | 45.0% | |
ATCAAGTGGTTACCCAGTGT+TGG | - | chr6.3:64275024-64275043 | MS.gene068432:CDS | 45.0% | |
ATGCTGCTGCTATACATTGC+AGG | - | chr6.3:64275128-64275147 | MS.gene068432:intron | 45.0% | |
CAAAAACTTGCCTAGGCTAG+TGG | - | chr6.3:64273306-64273325 | MS.gene068432:intron | 45.0% | |
CATGGACTTTACGTTTCACC+TGG | - | chr6.3:64272447-64272466 | MS.gene068432:intron | 45.0% | |
CTGCTATACATTGCAGGCTT+AGG | - | chr6.3:64275134-64275153 | MS.gene068432:intron | 45.0% | |
CTTATATGAGTGAGGCCAGA+TGG | - | chr6.3:64274948-64274967 | MS.gene068432:CDS | 45.0% | |
GCCTCACATATGATGGTTCA+TGG | - | chr6.3:64273166-64273185 | MS.gene068432:intron | 45.0% | |
GCTCCAAAGCCTACATCAAA+AGG | - | chr6.3:64273411-64273430 | MS.gene068432:intron | 45.0% | |
GGATGAAATTGTGTCAAGCG+AGG | - | chr6.3:64275156-64275175 | MS.gene068432:intron | 45.0% | |
TAAGAAGTCGTAGCCAACAC+TGG | + | chr6.3:64275040-64275059 | None:intergenic | 45.0% | |
TGCAAGAGAAGGACTCAATC+GGG | + | chr6.3:64273251-64273270 | None:intergenic | 45.0% | |
TGCATGTACTCCTCTGTTGT+TGG | + | chr6.3:64274992-64275011 | None:intergenic | 45.0% | |
TGGCCTCACTCATATAAGCA+TGG | + | chr6.3:64274946-64274965 | None:intergenic | 45.0% | |
TGTGCCGCAGTATTCATATC+AGG | + | chr6.3:64272195-64272214 | None:intergenic | 45.0% | |
TTCCTTGCTCGTCCTTGAAT+TGG | + | chr6.3:64273093-64273112 | None:intergenic | 45.0% | |
! | TAACTTCTTGCCACTAGCCT+AGG | + | chr6.3:64273319-64273338 | None:intergenic | 45.0% |
!! | ATATAGGTGGTGGAAGGAGT+TGG | - | chr6.3:64273550-64273569 | MS.gene068432:CDS | 45.0% |
!! | CTGTGCTATTTAGGGTGTTG+AGG | - | chr6.3:64272421-64272440 | MS.gene068432:intron | 45.0% |
!! | TTTAGGGTGTTGAGGCAACA+TGG | - | chr6.3:64272429-64272448 | MS.gene068432:intron | 45.0% |
!!! | TTTTTTTTTTTTTTATCAAT+AGG | - | chr6.3:64271945-64271964 | MS.gene068432:CDS | 5.0% |
AAGAGAAGGACTCAATCGGG+TGG | + | chr6.3:64273248-64273267 | None:intergenic | 50.0% | |
CAGATTTCCACCCTAGCGTT+TGG | - | chr6.3:64271788-64271807 | MS.gene068432:CDS | 50.0% | |
CTCTGCGCAAAAACTTGCCT+AGG | - | chr6.3:64273299-64273318 | MS.gene068432:intron | 50.0% | |
GATTTCCACCCTAGCGTTTG+GGG | - | chr6.3:64271790-64271809 | MS.gene068432:CDS | 50.0% | |
TTCTGGTCACCTTGAGTCCA+TGG | - | chr6.3:64273222-64273241 | MS.gene068432:intron | 50.0% | |
!!! | GAGGCGTTGGCTTTTACTTC+TGG | - | chr6.3:64273205-64273224 | MS.gene068432:intron | 50.0% |
AATCTCCCCAAACGCTAGGG+TGG | + | chr6.3:64271798-64271817 | None:intergenic | 55.0% | |
AGGACTCAATCGGGTGGCCA+TGG | + | chr6.3:64273242-64273261 | None:intergenic | 60.0% | |
ATCGGGTGGCCATGGACTCA+AGG | + | chr6.3:64273234-64273253 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 64271730 | 64275583 | 64271730 | ID=MS.gene068432 |
chr6.3 | mRNA | 64271730 | 64275583 | 64271730 | ID=MS.gene068432.t1;Parent=MS.gene068432 |
chr6.3 | exon | 64275467 | 64275583 | 64275467 | ID=MS.gene068432.t1.exon1;Parent=MS.gene068432.t1 |
chr6.3 | CDS | 64275467 | 64275583 | 64275467 | ID=cds.MS.gene068432.t1;Parent=MS.gene068432.t1 |
chr6.3 | exon | 64274845 | 64275124 | 64274845 | ID=MS.gene068432.t1.exon2;Parent=MS.gene068432.t1 |
chr6.3 | CDS | 64274845 | 64275124 | 64274845 | ID=cds.MS.gene068432.t1;Parent=MS.gene068432.t1 |
chr6.3 | exon | 64273861 | 64274233 | 64273861 | ID=MS.gene068432.t1.exon3;Parent=MS.gene068432.t1 |
chr6.3 | CDS | 64273861 | 64274233 | 64273861 | ID=cds.MS.gene068432.t1;Parent=MS.gene068432.t1 |
chr6.3 | exon | 64273539 | 64273757 | 64273539 | ID=MS.gene068432.t1.exon4;Parent=MS.gene068432.t1 |
chr6.3 | CDS | 64273539 | 64273757 | 64273539 | ID=cds.MS.gene068432.t1;Parent=MS.gene068432.t1 |
chr6.3 | exon | 64272136 | 64272346 | 64272136 | ID=MS.gene068432.t1.exon5;Parent=MS.gene068432.t1 |
chr6.3 | CDS | 64272136 | 64272346 | 64272136 | ID=cds.MS.gene068432.t1;Parent=MS.gene068432.t1 |
chr6.3 | exon | 64271730 | 64272023 | 64271730 | ID=MS.gene068432.t1.exon6;Parent=MS.gene068432.t1 |
chr6.3 | CDS | 64271730 | 64272023 | 64271730 | ID=cds.MS.gene068432.t1;Parent=MS.gene068432.t1 |
Gene Sequence |
Protein sequence |