AlfalfaGEDB | MS.gene069190

M. sativa cultivar XinJiangDaYe / MS.gene069190

KEGG: -
GO: -
PFAM: PF05678.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069190.t1	RHN54856.1	99.7	305	1	0	1	305	17	321	1.90E-67	266.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069190.t1	O82170	43.8	160	83	3	1	153	15	174	1.1e-23	112.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069190.t1	A0A396HNB9	99.7	305	1	0	1	305	17	321	1.4e-67	266.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene069190	-0.83985	1.24E-57	-1.69E-46
MS.gene049599	MS.gene069190	0.815055	1.12E-51	-1.69E-46
MS.gene049758	MS.gene069190	-0.853357	2.52E-61	-1.69E-46
MS.gene050301	MS.gene069190	-0.800807	1.21E-48	-1.69E-46
MS.gene050330	MS.gene069190	0.851734	7.32E-61	-1.69E-46
MS.gene050558	MS.gene069190	-0.808971	2.38E-50	-1.69E-46
MS.gene05119	MS.gene069190	0.840025	1.11E-57	-1.69E-46
MS.gene051662	MS.gene069190	-0.800634	1.31E-48	-1.69E-46
MS.gene051663	MS.gene069190	-0.809942	1.47E-50	-1.69E-46
MS.gene052309	MS.gene069190	0.826082	3.30E-54	-1.69E-46
MS.gene052344	MS.gene069190	0.836248	1.05E-56	-1.69E-46
MS.gene053054	MS.gene069190	0.810389	1.18E-50	-1.69E-46
MS.gene053836	MS.gene069190	-0.848367	6.41E-60	-1.69E-46
MS.gene054473	MS.gene069190	-0.818714	1.70E-52	-1.69E-46
MS.gene054942	MS.gene069190	-0.826768	2.26E-54	-1.69E-46
MS.gene055277	MS.gene069190	-0.835278	1.84E-56	-1.69E-46
MS.gene055422	MS.gene069190	-0.811801	5.84E-51	-1.69E-46
MS.gene055428	MS.gene069190	-0.824344	8.49E-54	-1.69E-46
MS.gene055712	MS.gene069190	-0.817755	2.80E-52	-1.69E-46
MS.gene055816	MS.gene069190	0.808044	3.76E-50	-1.69E-46
MS.gene056069	MS.gene069190	0.829274	5.64E-55	-1.69E-46
MS.gene056875	MS.gene069190	-0.806942	6.44E-50	-1.69E-46
MS.gene057121	MS.gene069190	-0.814478	1.51E-51	-1.69E-46
MS.gene057260	MS.gene069190	-0.804256	2.36E-49	-1.69E-46
MS.gene057439	MS.gene069190	-0.803678	3.11E-49	-1.69E-46
MS.gene057469	MS.gene069190	-0.803351	3.63E-49	-1.69E-46
MS.gene058002	MS.gene069190	-0.800357	1.50E-48	-1.69E-46
MS.gene05811	MS.gene069190	-0.821804	3.32E-53	-1.69E-46
MS.gene059518	MS.gene069190	-0.822288	2.57E-53	-1.69E-46
MS.gene059894	MS.gene069190	-0.818049	2.40E-52	-1.69E-46
MS.gene060476	MS.gene069190	-0.824167	9.35E-54	-1.69E-46
MS.gene061049	MS.gene069190	-0.820815	5.62E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069190.t1	MTR_5g030570	99.344	305	2	0	1	305	17	321	0.0	563
MS.gene069190.t1	MTR_4g050020	34.185	313	134	14	1	273	16	296	2.39e-20	89.7
MS.gene069190.t1	MTR_4g049980	32.822	326	145	14	1	286	16	307	9.62e-18	82.4
MS.gene069190.t1	MTR_8g067310	37.056	197	74	11	1	184	17	176	2.42e-17	79.7
MS.gene069190.t1	MTR_4g049900	35.060	251	124	12	12	246	184	411	3.27e-16	79.0
MS.gene069190.t1	MTR_3g099400	44.681	141	60	4	23	148	67	204	2.89e-12	66.6
MS.gene069190.t1	MTR_4g049970	35.556	225	100	12	56	246	215	428	3.01e-12	67.4
MS.gene069190.t1	MTR_4g049930	33.810	210	110	8	56	246	230	429	1.75e-11	65.1
MS.gene069190.t1	MTR_4g050660	32.886	149	84	5	3	146	18	155	2.54e-11	61.2
MS.gene069190.t1	MTR_4g050630	32.886	149	84	5	3	146	18	155	2.54e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069190.t1	AT1G32610	43.131	313	129	9	1	303	16	289	3.34e-48	163
MS.gene069190.t1	AT1G32610	43.131	313	129	9	1	303	16	289	3.34e-48	163
MS.gene069190.t1	AT1G32610	43.110	283	125	8	31	303	1	257	4.72e-42	146
MS.gene069190.t1	AT2G35230	51.497	167	74	3	1	160	15	181	9.86e-36	133
MS.gene069190.t1	AT2G35230	51.497	167	74	3	1	160	15	181	9.86e-36	133
MS.gene069190.t1	AT2G35230	59.509	163	50	5	157	304	133	294	3.67e-29	113
MS.gene069190.t1	AT1G78310	44.138	145	67	5	17	151	71	211	5.06e-17	80.5
MS.gene069190.t1	AT5G46780	43.396	159	61	6	1	156	26	158	1.75e-12	66.2
MS.gene069190.t1	AT5G46780	43.396	159	61	6	1	156	26	158	1.75e-12	66.2

Find 137 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACTAGGCATTGGATGATTA+TGG	0.222773	5.3:-19675688	None:intergenic
GAGAGGTTGGAGAAGGTAAA+AGG	0.258651	5.3:-19675739	None:intergenic
GATATTGTTCAGCAGCTTAC+TGG	0.273940	5.3:+19675194	MS.gene069190:CDS
CATGGGTGAGAACGGAAAAT+TGG	0.283230	5.3:-19675861	None:intergenic
AAGCGCATACTCTGCGGTTT+TGG	0.290073	5.3:-19675263	None:intergenic
GAAGGTGGTGGTTGAGGGCC+AGG	0.308456	5.3:-19675905	None:intergenic
CCTTTACATCAACCGAATTT+CGG	0.320758	5.3:+19675107	MS.gene069190:CDS
GCACCTAGACCTGCTCATTA+TGG	0.320949	5.3:+19675386	MS.gene069190:CDS
GAAGGGATCGGTGGCACGTT+AGG	0.322591	5.3:-19675626	None:intergenic
AAGAAGCTTGAAGGAGATAA+TGG	0.322872	5.3:-19675944	None:intergenic
ATAAAATGGGTAAGAATATA+AGG	0.335749	5.3:+19675078	None:intergenic
CTTTGACACCCGGGGATTTG+TGG	0.340765	5.3:+19675426	MS.gene069190:CDS
GCCGCATTATTGCCGAAATT+CGG	0.357336	5.3:-19675119	None:intergenic
AGAGGTTGGAGAAGGTAAAA+GGG	0.363377	5.3:-19675738	None:intergenic
GGCAAGAGAAATTGAGAGGT+TGG	0.367544	5.3:-19675752	None:intergenic
TTTCTCTTGCCTTCTCCAAC+TGG	0.372618	5.3:+19675764	MS.gene069190:CDS
TTCCTTGTACTTGCTGTTGA+GGG	0.374870	5.3:-19675562	None:intergenic
CCGGGAGAAGGTGGTGGTTG+AGG	0.386557	5.3:-19675911	None:intergenic
TTTGACACCCGGGGATTTGT+GGG	0.402297	5.3:+19675427	MS.gene069190:CDS
GCAGGCATTGGCATTGGCGG+TGG	0.407674	5.3:-19675335	None:intergenic
CGGGAGAAGGTGGTGGTTGA+GGG	0.412571	5.3:-19675910	None:intergenic
GGAGGAGGGGCTGCAGGCAT+TGG	0.412891	5.3:-19675347	None:intergenic
TGTACTTGCTGTTGAGGGTA+TGG	0.413576	5.3:-19675557	None:intergenic
CCGAAATTCGGTTGATGTAA+AGG	0.414293	5.3:-19675107	None:intergenic
GGGGCTGCAGGCATTGGCAT+TGG	0.419071	5.3:-19675341	None:intergenic
CCATGTGGTGAAGGAATACT+AGG	0.420117	5.3:-19675704	None:intergenic
GGAAGTGGAGGAGGGGCTGC+AGG	0.433475	5.3:-19675353	None:intergenic
GATTGGCGACTCAGTTGTAT+TGG	0.440814	5.3:-19675450	None:intergenic
TGGGCATTCATTGGTGGTAC+AGG	0.440917	5.3:-19675668	None:intergenic
ACTAGGCATTGGATGATTAT+GGG	0.441227	5.3:-19675687	None:intergenic
TATGGATGTGGTTGAGGCTG+AGG	0.443168	5.3:-19675539	None:intergenic
GGCAAACGAGGTCGGTTGAT+TGG	0.443638	5.3:-19675314	None:intergenic
GGTCGGTTGATTGGCGATAG+TGG	0.444199	5.3:-19675305	None:intergenic
GGAAAATTGGGTAGTGGTGA+TGG	0.448608	5.3:-19675848	None:intergenic
ATCGGTGGCACGTTAGGGTT+AGG	0.449603	5.3:-19675620	None:intergenic
CCAGGTGACAATAGTGGATA+AGG	0.452678	5.3:-19675815	None:intergenic
ATTCCTTCACCACATGGAAA+TGG	0.453102	5.3:+19675710	MS.gene069190:CDS
GTCGGTTGATTGGCGATAGT+GGG	0.455886	5.3:-19675304	None:intergenic
GCTGCAGGCATTGGCATTGG+CGG	0.456444	5.3:-19675338	None:intergenic
AAGGGATCGGTGGCACGTTA+GGG	0.465067	5.3:-19675625	None:intergenic
ATGGGTGAGAACGGAAAATT+GGG	0.467455	5.3:-19675860	None:intergenic
CGATGATGGATCCAGGTTCA+AGG	0.468168	5.3:+19675501	MS.gene069190:CDS
GGATGATTATGGGCATTCAT+TGG	0.473478	5.3:-19675677	None:intergenic
GGCATAGTGAAGAAGCTTGA+AGG	0.473777	5.3:-19675953	None:intergenic
TGATCTCTCCACCTAGGACT+TGG	0.475134	5.3:-19675974	None:intergenic
CTATGTGGAGGCCGAGGTGG+AGG	0.476226	5.3:-19675233	None:intergenic
GGAAGCAAAGCCGGTGGAGG+AGG	0.476777	5.3:-19675599	None:intergenic
TTCTCACCCATGGCACAGTC+AGG	0.480773	5.3:+19675872	MS.gene069190:CDS
AAAGCCGGTGGAGGAGGTTG+AGG	0.484799	5.3:-19675593	None:intergenic
TGAAAGCCAGGTGACAATAG+TGG	0.486791	5.3:-19675821	None:intergenic
TGTCCATAATGAGCAGGTCT+AGG	0.491911	5.3:-19675389	None:intergenic
CACAAATCCCCGGGTGTCAA+AGG	0.493788	5.3:-19675425	None:intergenic
AAGGAGATAATGGAAACATA+AGG	0.493950	5.3:-19675934	None:intergenic
GGTCTAGGTGCATTATTGTA+AGG	0.495779	5.3:-19675374	None:intergenic
TTTCCTTGTACTTGCTGTTG+AGG	0.496692	5.3:-19675563	None:intergenic
CAGAATTCGATGATGGATCC+AGG	0.498255	5.3:+19675494	MS.gene069190:CDS
CGCCTACTCCTTTGACACCC+GGG	0.500220	5.3:+19675417	MS.gene069190:CDS
TAGACAACAGCCTCAGCCTC+AGG	0.500628	5.3:+19675142	MS.gene069190:CDS
TGAGGGTATGGATGTGGTTG+AGG	0.501884	5.3:-19675545	None:intergenic
AATTGATTACCCCTTGAACC+TGG	0.502199	5.3:-19675512	None:intergenic
GGAGGCCTATGTGGAGGCCG+AGG	0.504125	5.3:-19675239	None:intergenic
TACCGCATGTAAGCAGAGAT+TGG	0.506624	5.3:-19675467	None:intergenic
TTAGGAAGCAAAGCCGGTGG+AGG	0.507371	5.3:-19675602	None:intergenic
TGCTGTTGAGGGTATGGATG+TGG	0.508421	5.3:-19675551	None:intergenic
GCTTACTGGATCACCTTCTC+AGG	0.508812	5.3:+19675208	MS.gene069190:CDS
TCTTCACTATGCCAAGTCCT+AGG	0.510997	5.3:+19675963	MS.gene069190:CDS
GGTGCATTATTGTAAGGAAG+TGG	0.516032	5.3:-19675368	None:intergenic
TGTATTGGCCCACAAATCCC+CGG	0.520888	5.3:-19675435	None:intergenic
TTATTGTAAGGAAGTGGAGG+AGG	0.524632	5.3:-19675362	None:intergenic
CCTTATCCACTATTGTCACC+TGG	0.527555	5.3:+19675815	MS.gene069190:CDS
TAAAATTCCTGACTGTGCCA+TGG	0.531709	5.3:-19675879	None:intergenic
GGCCTATGTGGAGGCCGAGG+TGG	0.538397	5.3:-19675236	None:intergenic
TTGCTTATGTTGTAAACCTG+AGG	0.538781	5.3:-19675158	None:intergenic
TCGCCTACTCCTTTGACACC+CGG	0.541580	5.3:+19675416	MS.gene069190:CDS
CGAGGTGGAGGTTCCTGAGA+AGG	0.547040	5.3:-19675221	None:intergenic
TACCCTCAACAGCAAGTACA+AGG	0.547122	5.3:+19675560	MS.gene069190:CDS
ACAGGACCATTGTTAAACCT+TGG	0.547580	5.3:-19675650	None:intergenic
GGGCCATTTCCATGTGGTGA+AGG	0.548333	5.3:-19675713	None:intergenic
TCGGTTGATTGGCGATAGTG+GGG	0.550489	5.3:-19675303	None:intergenic
GATGATGGATCCAGGTTCAA+GGG	0.550926	5.3:+19675502	MS.gene069190:CDS
CCTCAACCACCACCTTCTCC+CGG	0.551198	5.3:+19675911	MS.gene069190:CDS
AGAAATTGAGAGGTTGGAGA+AGG	0.553701	5.3:-19675746	None:intergenic
CCATTGTTAAACCTTGGAGA+AGG	0.559731	5.3:-19675644	None:intergenic
AGTAAATTCATGTAACCAGT+TGG	0.560878	5.3:-19675779	None:intergenic
GAGGTTGGAGAAGGTAAAAG+GGG	0.562255	5.3:-19675737	None:intergenic
GGCATTGGCGGTGGCAAACG+AGG	0.564750	5.3:-19675326	None:intergenic
CCTAGTATTCCTTCACCACA+TGG	0.564789	5.3:+19675704	MS.gene069190:CDS
GGTGATGGAAACTGAAAGCC+AGG	0.564886	5.3:-19675833	None:intergenic
ACATGAATTTACTGTCCCCT+CGG	0.566612	5.3:+19675789	MS.gene069190:CDS
AAAATTCCTGACTGTGCCAT+GGG	0.567374	5.3:-19675878	None:intergenic
AACATAAGGCCGGGAGAAGG+TGG	0.567896	5.3:-19675920	None:intergenic
TCAGCCTCAACCTCCTCCAC+CGG	0.570357	5.3:+19675589	MS.gene069190:CDS
GATAATGGAAACATAAGGCC+GGG	0.570473	5.3:-19675929	None:intergenic
CATTGTTAAACCTTGGAGAA+GGG	0.571066	5.3:-19675643	None:intergenic
TTCATGTAACCAGTTGGAGA+AGG	0.573635	5.3:-19675773	None:intergenic
GTATCTTCAGAATTCGATGA+TGG	0.573907	5.3:+19675487	MS.gene069190:CDS
CTCCACCTCGGCCTCCACAT+AGG	0.574926	5.3:+19675234	MS.gene069190:CDS
GATGGTTGTCCATAATGAGC+AGG	0.576520	5.3:-19675395	None:intergenic
ATGTTGTAAACCTGAGGCTG+AGG	0.576754	5.3:-19675152	None:intergenic
AGATAATGGAAACATAAGGC+CGG	0.576978	5.3:-19675930	None:intergenic
TTGGCGGTGGCAAACGAGGT+CGG	0.578409	5.3:-19675322	None:intergenic
TGATTATGGGCATTCATTGG+TGG	0.580050	5.3:-19675674	None:intergenic
AGAAGGCAAGAGAAATTGAG+AGG	0.582230	5.3:-19675756	None:intergenic
ATAAGGCCGGGAGAAGGTGG+TGG	0.582738	5.3:-19675917	None:intergenic
GAGAACGGAAAATTGGGTAG+TGG	0.583946	5.3:-19675854	None:intergenic
GACTGTGCCATGGGTGAGAA+CGG	0.588880	5.3:-19675869	None:intergenic
GCATTATTGTAAGGAAGTGG+AGG	0.589449	5.3:-19675365	None:intergenic
ACCGAATTTCGGCAATAATG+CGG	0.595282	5.3:+19675118	MS.gene069190:CDS
GCCTACTCCTTTGACACCCG+GGG	0.598293	5.3:+19675418	MS.gene069190:CDS
TTAAACCTTGGAGAAGGGAT+CGG	0.598406	5.3:-19675638	None:intergenic
GGAAACATAAGGCCGGGAGA+AGG	0.604523	5.3:-19675923	None:intergenic
TGCCACCGATCCCTTCTCCA+AGG	0.609685	5.3:+19675633	MS.gene069190:CDS
TATTGTAAGGAAGTGGAGGA+GGG	0.613727	5.3:-19675361	None:intergenic
CGGTTGATTGGCGATAGTGG+GGG	0.614379	5.3:-19675302	None:intergenic
TTAGGGTTAGGAAGCAAAGC+CGG	0.617155	5.3:-19675608	None:intergenic
TTGGAGAAGGTAAAAGGGGA+GGG	0.618422	5.3:-19675733	None:intergenic
TCCCCGGGTGTCAAAGGAGT+AGG	0.624052	5.3:-19675419	None:intergenic
GGTGAAGGAATACTAGGCAT+TGG	0.624436	5.3:-19675698	None:intergenic
ATTGTAAGGAAGTGGAGGAG+GGG	0.628162	5.3:-19675360	None:intergenic
CGCCAATCTCTGCTTACATG+CGG	0.629834	5.3:+19675465	MS.gene069190:CDS
GTTGGAGAAGGTAAAAGGGG+AGG	0.630989	5.3:-19675734	None:intergenic
GTATTGGCCCACAAATCCCC+GGG	0.632905	5.3:-19675434	None:intergenic
GGTGTCAAAGGAGTAGGCGA+TGG	0.634822	5.3:-19675413	None:intergenic
TTTGGCGGAGGCCTATGTGG+AGG	0.635356	5.3:-19675245	None:intergenic
GGATGTGGTTGAGGCTGAGG+CGG	0.635471	5.3:-19675536	None:intergenic
TTCTGCAAGCGCATACTCTG+CGG	0.637268	5.3:-19675269	None:intergenic
ATAGTGGATAAGGTGACCGA+GGG	0.646717	5.3:-19675805	None:intergenic
AATAGTGGATAAGGTGACCG+AGG	0.649485	5.3:-19675806	None:intergenic
TCACTATGCCAAGTCCTAGG+TGG	0.650698	5.3:+19675966	MS.gene069190:CDS
AACCTTGGAGAAGGGATCGG+TGG	0.656273	5.3:-19675635	None:intergenic
GGGTTAGGAAGCAAAGCCGG+TGG	0.664108	5.3:-19675605	None:intergenic
ATGATGGATCCAGGTTCAAG+GGG	0.667451	5.3:+19675503	MS.gene069190:CDS
CCTTCTCCAAGGTTTAACAA+TGG	0.674557	5.3:+19675644	MS.gene069190:CDS
GACTATTGATCTCTCCACCT+AGG	0.681405	5.3:-19675980	None:intergenic
CTTCTCAGGAACCTCCACCT+CGG	0.685807	5.3:+19675222	MS.gene069190:CDS
AGGGGAGGGCCATTTCCATG+TGG	0.730078	5.3:-19675719	None:intergenic
TAGTGGATAAGGTGACCGAG+GGG	0.755933	5.3:-19675804	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AGTAAATTCATGTAACCAGT+TGG	-	chr5.3:19675782-19675801	None:intergenic	30.0%
!	ACATAAGCAAGAACGATTTT+CGG	+	chr5.3:19675171-19675190	MS.gene069190:CDS	30.0%
!!	AAGGAGATAATGGAAACATA+AGG	-	chr5.3:19675937-19675956	None:intergenic	30.0%
	AAGAAGCTTGAAGGAGATAA+TGG	-	chr5.3:19675947-19675966	None:intergenic	35.0%
	CATTGTTAAACCTTGGAGAA+GGG	-	chr5.3:19675646-19675665	None:intergenic	35.0%
	CCTTTACATCAACCGAATTT+CGG	+	chr5.3:19675107-19675126	MS.gene069190:CDS	35.0%
	GTATCTTCAGAATTCGATGA+TGG	+	chr5.3:19675487-19675506	MS.gene069190:CDS	35.0%
	TTGCTTATGTTGTAAACCTG+AGG	-	chr5.3:19675161-19675180	None:intergenic	35.0%
!	CATAAGCAAGAACGATTTTC+GGG	+	chr5.3:19675172-19675191	MS.gene069190:CDS	35.0%
!!	ACTAGGCATTGGATGATTAT+GGG	-	chr5.3:19675690-19675709	None:intergenic	35.0%
!!	AGATAATGGAAACATAAGGC+CGG	-	chr5.3:19675933-19675952	None:intergenic	35.0%
!!	TACTAGGCATTGGATGATTA+TGG	-	chr5.3:19675691-19675710	None:intergenic	35.0%
	AAAATTCCTGACTGTGCCAT+GGG	-	chr5.3:19675881-19675900	None:intergenic	40.0%
	AATTGATTACCCCTTGAACC+TGG	-	chr5.3:19675515-19675534	None:intergenic	40.0%
	ACAGGACCATTGTTAAACCT+TGG	-	chr5.3:19675653-19675672	None:intergenic	40.0%
	ACATGAATTTACTGTCCCCT+CGG	+	chr5.3:19675789-19675808	MS.gene069190:CDS	40.0%
	ACCGAATTTCGGCAATAATG+CGG	+	chr5.3:19675118-19675137	MS.gene069190:CDS	40.0%
	AGAAATTGAGAGGTTGGAGA+AGG	-	chr5.3:19675749-19675768	None:intergenic	40.0%
	AGAAGGCAAGAGAAATTGAG+AGG	-	chr5.3:19675759-19675778	None:intergenic	40.0%
	AGAGGTTGGAGAAGGTAAAA+GGG	-	chr5.3:19675741-19675760	None:intergenic	40.0%
	ATGGGTGAGAACGGAAAATT+GGG	-	chr5.3:19675863-19675882	None:intergenic	40.0%
	ATTCCTTCACCACATGGAAA+TGG	+	chr5.3:19675710-19675729	MS.gene069190:CDS	40.0%
	CCATTGTTAAACCTTGGAGA+AGG	-	chr5.3:19675647-19675666	None:intergenic	40.0%
	CCTTCTCCAAGGTTTAACAA+TGG	+	chr5.3:19675644-19675663	MS.gene069190:CDS	40.0%
	GATATTGTTCAGCAGCTTAC+TGG	+	chr5.3:19675194-19675213	MS.gene069190:CDS	40.0%
	GCATTATTGTAAGGAAGTGG+AGG	-	chr5.3:19675368-19675387	None:intergenic	40.0%
	GGATGATTATGGGCATTCAT+TGG	-	chr5.3:19675680-19675699	None:intergenic	40.0%
	GGTCTAGGTGCATTATTGTA+AGG	-	chr5.3:19675377-19675396	None:intergenic	40.0%
	GGTGCATTATTGTAAGGAAG+TGG	-	chr5.3:19675371-19675390	None:intergenic	40.0%
	TAAAATTCCTGACTGTGCCA+TGG	-	chr5.3:19675882-19675901	None:intergenic	40.0%
	TATTGTAAGGAAGTGGAGGA+GGG	-	chr5.3:19675364-19675383	None:intergenic	40.0%
	TGATTATGGGCATTCATTGG+TGG	-	chr5.3:19675677-19675696	None:intergenic	40.0%
	TTAAACCTTGGAGAAGGGAT+CGG	-	chr5.3:19675641-19675660	None:intergenic	40.0%
	TTATTGTAAGGAAGTGGAGG+AGG	-	chr5.3:19675365-19675384	None:intergenic	40.0%
	TTCATGTAACCAGTTGGAGA+AGG	-	chr5.3:19675776-19675795	None:intergenic	40.0%
!	ATGGCACAGTCAGGAATTTT+AGG	+	chr5.3:19675881-19675900	MS.gene069190:CDS	40.0%
!	CCGAAATTCGGTTGATGTAA+AGG	-	chr5.3:19675110-19675129	None:intergenic	40.0%
!	TGGCACAGTCAGGAATTTTA+GGG	+	chr5.3:19675882-19675901	MS.gene069190:CDS	40.0%
!!	GATAATGGAAACATAAGGCC+GGG	-	chr5.3:19675932-19675951	None:intergenic	40.0%
!!	TTCCTTGTACTTGCTGTTGA+GGG	-	chr5.3:19675565-19675584	None:intergenic	40.0%
!!	TTTCCTTGTACTTGCTGTTG+AGG	-	chr5.3:19675566-19675585	None:intergenic	40.0%
	ATGTTGTAAACCTGAGGCTG+AGG	-	chr5.3:19675155-19675174	None:intergenic	45.0%
	ATTGTAAGGAAGTGGAGGAG+GGG	-	chr5.3:19675363-19675382	None:intergenic	45.0%
	CATGGGTGAGAACGGAAAAT+TGG	-	chr5.3:19675864-19675883	None:intergenic	45.0%
	CCATGTGGTGAAGGAATACT+AGG	-	chr5.3:19675707-19675726	None:intergenic	45.0%
	CCTAGTATTCCTTCACCACA+TGG	+	chr5.3:19675704-19675723	MS.gene069190:CDS	45.0%
	CCTTATCCACTATTGTCACC+TGG	+	chr5.3:19675815-19675834	MS.gene069190:CDS	45.0%
	GAGAACGGAAAATTGGGTAG+TGG	-	chr5.3:19675857-19675876	None:intergenic	45.0%
	GAGAGGTTGGAGAAGGTAAA+AGG	-	chr5.3:19675742-19675761	None:intergenic	45.0%
	GAGGTTGGAGAAGGTAAAAG+GGG	-	chr5.3:19675740-19675759	None:intergenic	45.0%
	GATGGTTGTCCATAATGAGC+AGG	-	chr5.3:19675398-19675417	None:intergenic	45.0%
	GATTGGCGACTCAGTTGTAT+TGG	-	chr5.3:19675453-19675472	None:intergenic	45.0%
	GCCGCATTATTGCCGAAATT+CGG	-	chr5.3:19675122-19675141	None:intergenic	45.0%
	GGCAAGAGAAATTGAGAGGT+TGG	-	chr5.3:19675755-19675774	None:intergenic	45.0%
	GGCATAGTGAAGAAGCTTGA+AGG	-	chr5.3:19675956-19675975	None:intergenic	45.0%
	GGTGAAGGAATACTAGGCAT+TGG	-	chr5.3:19675701-19675720	None:intergenic	45.0%
	TACCCTCAACAGCAAGTACA+AGG	+	chr5.3:19675560-19675579	MS.gene069190:CDS	45.0%
	TACCGCATGTAAGCAGAGAT+TGG	-	chr5.3:19675470-19675489	None:intergenic	45.0%
	TCTTCACTATGCCAAGTCCT+AGG	+	chr5.3:19675963-19675982	MS.gene069190:CDS	45.0%
	TGAAAGCCAGGTGACAATAG+TGG	-	chr5.3:19675824-19675843	None:intergenic	45.0%
	TGTCCATAATGAGCAGGTCT+AGG	-	chr5.3:19675392-19675411	None:intergenic	45.0%
	TTAGGGTTAGGAAGCAAAGC+CGG	-	chr5.3:19675611-19675630	None:intergenic	45.0%
	TTGGAGAAGGTAAAAGGGGA+GGG	-	chr5.3:19675736-19675755	None:intergenic	45.0%
	TTTCTCTTGCCTTCTCCAAC+TGG	+	chr5.3:19675764-19675783	MS.gene069190:CDS	45.0%
!	CAATTTTCCGTTCTCACCCA+TGG	+	chr5.3:19675862-19675881	MS.gene069190:CDS	45.0%
!	GGAAAATTGGGTAGTGGTGA+TGG	-	chr5.3:19675851-19675870	None:intergenic	45.0%
!!	AATAGTGGATAAGGTGACCG+AGG	-	chr5.3:19675809-19675828	None:intergenic	45.0%
!!	ATAGTGGATAAGGTGACCGA+GGG	-	chr5.3:19675808-19675827	None:intergenic	45.0%
!!	ATGATGGATCCAGGTTCAAG+GGG	+	chr5.3:19675503-19675522	MS.gene069190:CDS	45.0%
!!	CAGAATTCGATGATGGATCC+AGG	+	chr5.3:19675494-19675513	MS.gene069190:CDS	45.0%
!!	CCAGGTGACAATAGTGGATA+AGG	-	chr5.3:19675818-19675837	None:intergenic	45.0%
!!	GATGATGGATCCAGGTTCAA+GGG	+	chr5.3:19675502-19675521	MS.gene069190:CDS	45.0%
!!	TGTACTTGCTGTTGAGGGTA+TGG	-	chr5.3:19675560-19675579	None:intergenic	45.0%
	CGCCAATCTCTGCTTACATG+CGG	+	chr5.3:19675465-19675484	MS.gene069190:CDS	50.0%
	GCACCTAGACCTGCTCATTA+TGG	+	chr5.3:19675386-19675405	MS.gene069190:CDS	50.0%
	GCTTACTGGATCACCTTCTC+AGG	+	chr5.3:19675208-19675227	MS.gene069190:CDS	50.0%
	GTCGGTTGATTGGCGATAGT+GGG	-	chr5.3:19675307-19675326	None:intergenic	50.0%
	GTTGGAGAAGGTAAAAGGGG+AGG	-	chr5.3:19675737-19675756	None:intergenic	50.0%
	TATGGATGTGGTTGAGGCTG+AGG	-	chr5.3:19675542-19675561	None:intergenic	50.0%
	TCACTATGCCAAGTCCTAGG+TGG	+	chr5.3:19675966-19675985	MS.gene069190:CDS	50.0%
	TCGGTTGATTGGCGATAGTG+GGG	-	chr5.3:19675306-19675325	None:intergenic	50.0%
	TGATCTCTCCACCTAGGACT+TGG	-	chr5.3:19675977-19675996	None:intergenic	50.0%
	TTCTGCAAGCGCATACTCTG+CGG	-	chr5.3:19675272-19675291	None:intergenic	50.0%
	TTTGACACCCGGGGATTTGT+GGG	+	chr5.3:19675427-19675446	MS.gene069190:CDS	50.0%
!	AAGCGCATACTCTGCGGTTT+TGG	-	chr5.3:19675266-19675285	None:intergenic	50.0%
!	TAGTGGATAAGGTGACCGAG+GGG	-	chr5.3:19675807-19675826	None:intergenic	50.0%
!	TGAGGGTATGGATGTGGTTG+AGG	-	chr5.3:19675548-19675567	None:intergenic	50.0%
!	TGCTGTTGAGGGTATGGATG+TGG	-	chr5.3:19675554-19675573	None:intergenic	50.0%
!	TGGGCATTCATTGGTGGTAC+AGG	-	chr5.3:19675671-19675690	None:intergenic	50.0%
!	TGTATTGGCCCACAAATCCC+CGG	-	chr5.3:19675438-19675457	None:intergenic	50.0%
!!	CGATGATGGATCCAGGTTCA+AGG	+	chr5.3:19675501-19675520	MS.gene069190:CDS	50.0%
!!	GGTGATGGAAACTGAAAGCC+AGG	-	chr5.3:19675836-19675855	None:intergenic	50.0%
!!!	CAGTCAGGAATTTTAGGGCC+TGG	+	chr5.3:19675887-19675906	MS.gene069190:CDS	50.0%
	AACATAAGGCCGGGAGAAGG+TGG	-	chr5.3:19675923-19675942	None:intergenic	55.0%
	AACCTTGGAGAAGGGATCGG+TGG	-	chr5.3:19675638-19675657	None:intergenic	55.0%
	AAGGGATCGGTGGCACGTTA+GGG	-	chr5.3:19675628-19675647	None:intergenic	55.0%
	ATCGGTGGCACGTTAGGGTT+AGG	-	chr5.3:19675623-19675642	None:intergenic	55.0%
	CACAAATCCCCGGGTGTCAA+AGG	-	chr5.3:19675428-19675447	None:intergenic	55.0%
	CTTCTCAGGAACCTCCACCT+CGG	+	chr5.3:19675222-19675241	MS.gene069190:CDS	55.0%
	CTTTGACACCCGGGGATTTG+TGG	+	chr5.3:19675426-19675445	MS.gene069190:CDS	55.0%
	GACTGTGCCATGGGTGAGAA+CGG	-	chr5.3:19675872-19675891	None:intergenic	55.0%
	GGAAACATAAGGCCGGGAGA+AGG	-	chr5.3:19675926-19675945	None:intergenic	55.0%
	GGCAAACGAGGTCGGTTGAT+TGG	-	chr5.3:19675317-19675336	None:intergenic	55.0%
	GGGCCATTTCCATGTGGTGA+AGG	-	chr5.3:19675716-19675735	None:intergenic	55.0%
	GGTCGGTTGATTGGCGATAG+TGG	-	chr5.3:19675308-19675327	None:intergenic	55.0%
	GGTGTCAAAGGAGTAGGCGA+TGG	-	chr5.3:19675416-19675435	None:intergenic	55.0%
	TAGACAACAGCCTCAGCCTC+AGG	+	chr5.3:19675142-19675161	MS.gene069190:CDS	55.0%
	TCGCCTACTCCTTTGACACC+CGG	+	chr5.3:19675416-19675435	MS.gene069190:CDS	55.0%
	TTAGGAAGCAAAGCCGGTGG+AGG	-	chr5.3:19675605-19675624	None:intergenic	55.0%
	TTCTCACCCATGGCACAGTC+AGG	+	chr5.3:19675872-19675891	MS.gene069190:CDS	55.0%
!	CGGTTGATTGGCGATAGTGG+GGG	-	chr5.3:19675305-19675324	None:intergenic	55.0%
!	GTATTGGCCCACAAATCCCC+GGG	-	chr5.3:19675437-19675456	None:intergenic	55.0%
!!	ATACTCTGCGGTTTTGGCGG+AGG	-	chr5.3:19675260-19675279	None:intergenic	55.0%
!!	CGCATACTCTGCGGTTTTGG+CGG	-	chr5.3:19675263-19675282	None:intergenic	55.0%
!!	TTGATTGGCGATAGTGGGGG+AGG	-	chr5.3:19675302-19675321	None:intergenic	55.0%
	AAAGCCGGTGGAGGAGGTTG+AGG	-	chr5.3:19675596-19675615	None:intergenic	60.0%
	AGGGGAGGGCCATTTCCATG+TGG	-	chr5.3:19675722-19675741	None:intergenic	60.0%
	ATAAGGCCGGGAGAAGGTGG+TGG	-	chr5.3:19675920-19675939	None:intergenic	60.0%
	CCTCAACCACCACCTTCTCC+CGG	+	chr5.3:19675911-19675930	MS.gene069190:CDS	60.0%
	CGAGGTGGAGGTTCCTGAGA+AGG	-	chr5.3:19675224-19675243	None:intergenic	60.0%
	CGCCTACTCCTTTGACACCC+GGG	+	chr5.3:19675417-19675436	MS.gene069190:CDS	60.0%
	GAAGGGATCGGTGGCACGTT+AGG	-	chr5.3:19675629-19675648	None:intergenic	60.0%
	GCCTACTCCTTTGACACCCG+GGG	+	chr5.3:19675418-19675437	MS.gene069190:CDS	60.0%
	GGATGTGGTTGAGGCTGAGG+CGG	-	chr5.3:19675539-19675558	None:intergenic	60.0%
	GGGTTAGGAAGCAAAGCCGG+TGG	-	chr5.3:19675608-19675627	None:intergenic	60.0%
	TCAGCCTCAACCTCCTCCAC+CGG	+	chr5.3:19675589-19675608	MS.gene069190:CDS	60.0%
	TCCCCGGGTGTCAAAGGAGT+AGG	-	chr5.3:19675422-19675441	None:intergenic	60.0%
	TGCCACCGATCCCTTCTCCA+AGG	+	chr5.3:19675633-19675652	MS.gene069190:CDS	60.0%
	TTGGCGGTGGCAAACGAGGT+CGG	-	chr5.3:19675325-19675344	None:intergenic	60.0%
	TTTGGCGGAGGCCTATGTGG+AGG	-	chr5.3:19675248-19675267	None:intergenic	60.0%
!	CGGGAGAAGGTGGTGGTTGA+GGG	-	chr5.3:19675913-19675932	None:intergenic	60.0%
!!	GCTGCAGGCATTGGCATTGG+CGG	-	chr5.3:19675341-19675360	None:intergenic	60.0%
!!	GGTTTTGGCGGAGGCCTATG+TGG	-	chr5.3:19675251-19675270	None:intergenic	60.0%
	CTATGTGGAGGCCGAGGTGG+AGG	-	chr5.3:19675236-19675255	None:intergenic	65.0%
	CTCCACCTCGGCCTCCACAT+AGG	+	chr5.3:19675234-19675253	MS.gene069190:CDS	65.0%
	GGAAGCAAAGCCGGTGGAGG+AGG	-	chr5.3:19675602-19675621	None:intergenic	65.0%
!	CCGGGAGAAGGTGGTGGTTG+AGG	-	chr5.3:19675914-19675933	None:intergenic	65.0%
!	GAAGGTGGTGGTTGAGGGCC+AGG	-	chr5.3:19675908-19675927	None:intergenic	65.0%
!!	GCAGGCATTGGCATTGGCGG+TGG	-	chr5.3:19675338-19675357	None:intergenic	65.0%
!!	GGCATTGGCGGTGGCAAACG+AGG	-	chr5.3:19675329-19675348	None:intergenic	65.0%
!!	GGGGCTGCAGGCATTGGCAT+TGG	-	chr5.3:19675344-19675363	None:intergenic	65.0%
	GGAAGTGGAGGAGGGGCTGC+AGG	-	chr5.3:19675356-19675375	None:intergenic	70.0%
	GGAGGAGGGGCTGCAGGCAT+TGG	-	chr5.3:19675350-19675369	None:intergenic	70.0%
	GGAGGCCTATGTGGAGGCCG+AGG	-	chr5.3:19675242-19675261	None:intergenic	70.0%
	GGCCTATGTGGAGGCCGAGG+TGG	-	chr5.3:19675239-19675258	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	19675083	19676000	19675083	ID=MS.gene069190
chr5.3	mRNA	19675083	19676000	19675083	ID=MS.gene069190.t1;Parent=MS.gene069190
chr5.3	exon	19675083	19676000	19675083	ID=MS.gene069190.t1.exon1;Parent=MS.gene069190.t1
chr5.3	CDS	19675083	19676000	19675083	ID=cds.MS.gene069190.t1;Parent=MS.gene069190.t1

Gene Sequence

>MS.gene069190

ATGGGTAAGAATATAAGGAAAAGTCCTTTACATCAACCGAATTTCGGCAATAATGCGGCTAGACAACAGCCTCAGCCTCAGGTTTACAACATAAGCAAGAACGATTTTCGGGATATTGTTCAGCAGCTTACTGGATCACCTTCTCAGGAACCTCCACCTCGGCCTCCACATAGGCCTCCGCCAAAACCGCAGAGTATGCGCTTGCAGAAAATTAGACCTCCCCCACTATCGCCAATCAACCGACCTCGTTTGCCACCGCCAATGCCAATGCCTGCAGCCCCTCCTCCACTTCCTTACAATAATGCACCTAGACCTGCTCATTATGGACAACCATCGCCTACTCCTTTGACACCCGGGGATTTGTGGGCCAATACAACTGAGTCGCCAATCTCTGCTTACATGCGGTATCTTCAGAATTCGATGATGGATCCAGGTTCAAGGGGTAATCAATTTCCGCCTCAGCCTCAACCACATCCATACCCTCAACAGCAAGTACAAGGAAATTATCAGCCTCAACCTCCTCCACCGGCTTTGCTTCCTAACCCTAACGTGCCACCGATCCCTTCTCCAAGGTTTAACAATGGTCCTGTACCACCAATGAATGCCCATAATCATCCAATGCCTAGTATTCCTTCACCACATGGAAATGGCCCTCCCCTTTTACCTTCTCCAACCTCTCAATTTCTCTTGCCTTCTCCAACTGGTTACATGAATTTACTGTCCCCTCGGTCACCTTATCCACTATTGTCACCTGGCTTTCAGTTTCCATCACCACTACCCAATTTTCCGTTCTCACCCATGGCACAGTCAGGAATTTTAGGGCCTGGCCCTCAACCACCACCTTCTCCCGGCCTTATGTTTCCATTATCTCCTTCAAGCTTCTTCACTATGCCAAGTCCTAGGTGGAGAGATCAATAG

Protein sequence

>MS.gene069190.t1

MGKNIRKSPLHQPNFGNNAARQQPQPQVYNISKNDFRDIVQQLTGSPSQEPPPRPPHRPPPKPQSMRLQKIRPPPLSPINRPRLPPPMPMPAAPPPLPYNNAPRPAHYGQPSPTPLTPGDLWANTTESPISAYMRYLQNSMMDPGSRGNQFPPQPQPHPYPQQQVQGNYQPQPPPPALLPNPNVPPIPSPRFNNGPVPPMNAHNHPMPSIPSPHGNGPPLLPSPTSQFLLPSPTGYMNLLSPRSPYPLLSPGFQFPSPLPNFPFSPMAQSGILGPGPQPPPSPGLMFPLSPSSFFTMPSPRWRDQ