Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070560.t1 | XP_003613744.1 | 97.7 | 259 | 6 | 0 | 2 | 260 | 5 | 263 | 9.10E-143 | 516.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070560.t1 | Q8VYI1 | 78.1 | 260 | 56 | 1 | 1 | 260 | 2 | 260 | 1.5e-117 | 423.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070560.t1 | B7FLU5 | 97.7 | 259 | 6 | 0 | 2 | 260 | 5 | 263 | 6.6e-143 | 516.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene02144 | MS.gene070560 | PPI |
MS.gene08289 | MS.gene070560 | PPI |
MS.gene032882 | MS.gene070560 | PPI |
MS.gene55207 | MS.gene070560 | PPI |
MS.gene02757 | MS.gene070560 | PPI |
MS.gene027563 | MS.gene070560 | PPI |
MS.gene34901 | MS.gene070560 | PPI |
MS.gene003352 | MS.gene070560 | PPI |
MS.gene68324 | MS.gene070560 | PPI |
MS.gene023338 | MS.gene070560 | PPI |
MS.gene77418 | MS.gene070560 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070560.t1 | MTR_5g040320 | 97.683 | 259 | 6 | 0 | 2 | 260 | 5 | 263 | 0.0 | 528 |
MS.gene070560.t1 | MTR_1g097310 | 67.200 | 250 | 79 | 2 | 6 | 255 | 8 | 254 | 2.62e-125 | 356 |
MS.gene070560.t1 | MTR_1g097320 | 63.704 | 135 | 49 | 0 | 73 | 207 | 1 | 135 | 1.06e-60 | 188 |
MS.gene070560.t1 | MTR_6g039970 | 27.354 | 223 | 143 | 9 | 36 | 250 | 52 | 263 | 1.83e-13 | 68.9 |
MS.gene070560.t1 | MTR_8g063210 | 27.488 | 211 | 135 | 8 | 36 | 239 | 52 | 251 | 2.36e-13 | 68.6 |
MS.gene070560.t1 | MTR_5g035190 | 28.251 | 223 | 141 | 9 | 36 | 250 | 52 | 263 | 4.96e-13 | 67.8 |
MS.gene070560.t1 | MTR_5g035190 | 29.557 | 203 | 127 | 8 | 56 | 250 | 15 | 209 | 7.60e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070560.t1 | AT1G14290 | 76.538 | 260 | 60 | 1 | 1 | 260 | 1 | 259 | 2.44e-154 | 430 |
MS.gene070560.t1 | AT1G69640 | 78.077 | 260 | 56 | 1 | 1 | 260 | 2 | 260 | 2.77e-145 | 407 |
MS.gene070560.t1 | AT1G14290 | 82.065 | 184 | 33 | 0 | 77 | 260 | 2 | 185 | 6.86e-116 | 330 |
MS.gene070560.t1 | AT2G29390 | 26.818 | 220 | 135 | 8 | 33 | 235 | 49 | 259 | 2.96e-12 | 65.5 |
Find 53 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAAGTTTGATGTTGTTAA+AGG | 0.231277 | 5.3:+28263796 | MS.gene070560:CDS |
AGATGAGGATGAAAAGAATT+TGG | 0.239236 | 5.3:+28263771 | MS.gene070560:CDS |
TTAGTTTATTGGATTTATTC+TGG | 0.243045 | 5.3:+28263694 | MS.gene070560:CDS |
GTGAGAAATGATGATGGATT+TGG | 0.265705 | 5.3:+28263633 | None:intergenic |
GTTATGTGGGACAAAATCTT+AGG | 0.269390 | 5.3:+28265487 | MS.gene070560:CDS |
GGGGTTTCTGATGAGATGTT+AGG | 0.282336 | 5.3:+28263655 | MS.gene070560:CDS |
GTTTGTTTGCTGAAGATTAT+AGG | 0.288420 | 5.3:+28263734 | MS.gene070560:CDS |
TGAGAAATGATGATGGATTT+GGG | 0.332269 | 5.3:+28263634 | None:intergenic |
CTCATTGTACCTTATTCGTT+TGG | 0.338165 | 5.3:+28265208 | MS.gene070560:CDS |
CGCAACCGTTCTTTGTTATG+TGG | 0.347193 | 5.3:+28265473 | MS.gene070560:CDS |
TATAGAGCTCCAAACGAATA+AGG | 0.355458 | 5.3:-28265217 | None:intergenic |
TGGATGATCACTGTGGTTTA+TGG | 0.355678 | 5.3:+28265359 | MS.gene070560:CDS |
CACTGTGGTTTATGGCTCCC+TGG | 0.364308 | 5.3:+28265367 | MS.gene070560:CDS |
GCTCTCTTCTCTAATGAGTA+TGG | 0.377222 | 5.3:-28265520 | None:intergenic |
ACTTGTTGCCGTACAGTTGA+TGG | 0.393390 | 5.3:-28265441 | None:intergenic |
ATTACTCATTCATCCTTGTA+AGG | 0.397174 | 5.3:-28265574 | None:intergenic |
TATTACTGCAATGTTGGTAA+TGG | 0.409424 | 5.3:+28265105 | MS.gene070560:CDS |
GGGTTTCTGATGAGATGTTA+GGG | 0.418518 | 5.3:+28263656 | MS.gene070560:CDS |
TATTCTCATTGGTACTACTT+TGG | 0.419651 | 5.3:-28265054 | None:intergenic |
ACAATTTATTACTGCAATGT+TGG | 0.438454 | 5.3:+28265099 | MS.gene070560:CDS |
TAAATCCAATAAACTAAAAG+TGG | 0.460414 | 5.3:-28263688 | None:intergenic |
ATCGTTAAGAAGCCCCTCAA+TGG | 0.478825 | 5.3:-28265248 | None:intergenic |
GAGAGTGAATGTGTTTGTAT+AGG | 0.484907 | 5.3:-28265174 | None:intergenic |
TCATCCTTGTAAGGTTTACA+AGG | 0.487494 | 5.3:-28265565 | None:intergenic |
CTATACAATCATCCCATTGA+GGG | 0.494387 | 5.3:+28265235 | MS.gene070560:CDS |
ACTGTGGTTTATGGCTCCCT+GGG | 0.512563 | 5.3:+28265368 | MS.gene070560:CDS |
AACATGTGGAATAGGTTCCC+AGG | 0.518779 | 5.3:-28265385 | None:intergenic |
AAGGAGAGAAGTATTCTCAT+TGG | 0.524581 | 5.3:-28265065 | None:intergenic |
GCAACCGTTCTTTGTTATGT+GGG | 0.527794 | 5.3:+28265474 | MS.gene070560:CDS |
TCGTTAAGAAGCCCCTCAAT+GGG | 0.532585 | 5.3:-28265247 | None:intergenic |
AAAACTTACTGCAAACAAAA+GGG | 0.533273 | 5.3:-28263857 | None:intergenic |
TCAACAAGCTGTTCAAGCTG+TGG | 0.543673 | 5.3:+28263828 | MS.gene070560:CDS |
CTCGAGGACTCATACCAGAT+AGG | 0.552424 | 5.3:-28265297 | None:intergenic |
CTCTAATGAGTATGGCATGT+AGG | 0.553171 | 5.3:-28265512 | None:intergenic |
TAGACCTTGTAAACCTTACA+AGG | 0.553677 | 5.3:+28265561 | MS.gene070560:CDS |
TTGTCCCACATAACAAAGAA+CGG | 0.560325 | 5.3:-28265478 | None:intergenic |
TCTATACAATCATCCCATTG+AGG | 0.565015 | 5.3:+28265234 | MS.gene070560:CDS |
GACGTACACCATCAACTGTA+CGG | 0.593969 | 5.3:+28265433 | MS.gene070560:CDS |
TCATTAGAGAAGAGAGCTAG+TGG | 0.601615 | 5.3:+28265526 | MS.gene070560:CDS |
ACATGTGGAATAGGTTCCCA+GGG | 0.610107 | 5.3:-28265384 | None:intergenic |
CTTCTTAACGATACCATCGG+TGG | 0.618874 | 5.3:+28265259 | MS.gene070560:CDS |
CAATGTTGGTAATGGACACA+TGG | 0.623258 | 5.3:+28265113 | MS.gene070560:CDS |
TAAATTGTCTTGCTAAAACA+AGG | 0.626413 | 5.3:-28265084 | None:intergenic |
CTTTGCCACCATTAAAACCG+TGG | 0.628473 | 5.3:+28265339 | MS.gene070560:CDS |
GGGCTTCTTAACGATACCAT+CGG | 0.628664 | 5.3:+28265256 | MS.gene070560:CDS |
AAAAGATAAAGCTCCACCGA+TGG | 0.631297 | 5.3:-28265272 | None:intergenic |
GAGAAATGATGATGGATTTG+GGG | 0.644982 | 5.3:+28263635 | None:intergenic |
TATACAATCATCCCATTGAG+GGG | 0.661307 | 5.3:+28265236 | MS.gene070560:CDS |
TAAACCACAGTGATCATCCA+CGG | 0.672027 | 5.3:-28265356 | None:intergenic |
ACAGTTGATGGTGTACGTCG+TGG | 0.672802 | 5.3:-28265429 | None:intergenic |
AGAAATGATGATGGATTTGG+GGG | 0.693054 | 5.3:+28263636 | None:intergenic |
TTAGAGAAGAGAGCTAGTGG+CGG | 0.706802 | 5.3:+28265529 | MS.gene070560:CDS |
AAAACCGTGGATGATCACTG+TGG | 0.771335 | 5.3:+28265352 | MS.gene070560:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTCTGATTTTTGAAA+CGG | - | chr5.3:28264616-28264635 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTTGTTTGTAGA+GGG | + | chr5.3:28263914-28263933 | MS.gene070560:intron | 15.0% |
!!! | TTTTTTTTTTTTGTTTGTAG+AGG | + | chr5.3:28263913-28263932 | MS.gene070560:intron | 15.0% |
!! | TAAATCCAATAAACTAAAAG+TGG | - | chr5.3:28263691-28263710 | None:intergenic | 20.0% |
!! | TGTATAACATATTGTCATTA+AGG | - | chr5.3:28264506-28264525 | None:intergenic | 20.0% |
!! | TTAGTTTATTGGATTTATTC+TGG | + | chr5.3:28263694-28263713 | MS.gene070560:CDS | 20.0% |
!!! | AAGTTTCTTTTACACAATAA+AGG | + | chr5.3:28264534-28264553 | MS.gene070560:intron | 20.0% |
!!! | AATTGTTATTGAAAAACATG+TGG | - | chr5.3:28265402-28265421 | None:intergenic | 20.0% |
! | AAAAACTTACTGCAAACAAA+AGG | - | chr5.3:28263861-28263880 | None:intergenic | 25.0% |
! | AAAACTTACTGCAAACAAAA+GGG | - | chr5.3:28263860-28263879 | None:intergenic | 25.0% |
! | AAACATAGTATTTGCAAAAG+AGG | - | chr5.3:28264235-28264254 | None:intergenic | 25.0% |
! | AACATAGTATTTGCAAAAGA+GGG | - | chr5.3:28264234-28264253 | None:intergenic | 25.0% |
! | ACAATTTATTACTGCAATGT+TGG | + | chr5.3:28265099-28265118 | MS.gene070560:CDS | 25.0% |
! | AGTAAAATCAACACAAGATT+TGG | - | chr5.3:28264718-28264737 | None:intergenic | 25.0% |
! | CTATAACTATAACTAAACTG+TGG | + | chr5.3:28264992-28265011 | MS.gene070560:intron | 25.0% |
! | CTTAAAAGTCAACACATAAA+GGG | - | chr5.3:28264146-28264165 | None:intergenic | 25.0% |
! | GCTTAATGAATTGATCTATT+TGG | + | chr5.3:28264119-28264138 | MS.gene070560:intron | 25.0% |
! | GTTACATACAAAAAAAGATG+AGG | + | chr5.3:28263756-28263775 | MS.gene070560:CDS | 25.0% |
! | GTTACTTAATTTATCTGAGT+TGG | + | chr5.3:28264365-28264384 | MS.gene070560:intron | 25.0% |
! | TAAATTGTCTTGCTAAAACA+AGG | - | chr5.3:28265087-28265106 | None:intergenic | 25.0% |
! | TATCTTAAGCTACATCAAAA+GGG | + | chr5.3:28264435-28264454 | MS.gene070560:intron | 25.0% |
! | TATTGAAAAACATGTGGAAT+AGG | - | chr5.3:28265396-28265415 | None:intergenic | 25.0% |
! | TCTAAGTTTGATGTTGTTAA+AGG | + | chr5.3:28263796-28263815 | MS.gene070560:CDS | 25.0% |
! | TTATCTTAAGCTACATCAAA+AGG | + | chr5.3:28264434-28264453 | MS.gene070560:intron | 25.0% |
!! | TCTTTTACACAATAAAGGAA+AGG | + | chr5.3:28264539-28264558 | MS.gene070560:intron | 25.0% |
!!! | ATCTTGTGTTGATTTTACTT+TGG | + | chr5.3:28264719-28264738 | MS.gene070560:intron | 25.0% |
!!! | TCTGGTTTTTATGTTGTTTT+GGG | + | chr5.3:28263712-28263731 | MS.gene070560:CDS | 25.0% |
!!! | TTCTGGTTTTTATGTTGTTT+TGG | + | chr5.3:28263711-28263730 | MS.gene070560:CDS | 25.0% |
AACTATAACTAAACTGTGGT+TGG | + | chr5.3:28264996-28265015 | MS.gene070560:intron | 30.0% | |
AAGAACAACTCATAACCATT+AGG | - | chr5.3:28264593-28264612 | None:intergenic | 30.0% | |
AATGAAGTTGTGATTGTATC+TGG | + | chr5.3:28264965-28264984 | MS.gene070560:intron | 30.0% | |
ACTATAACTAAACTGTGGTT+GGG | + | chr5.3:28264997-28265016 | MS.gene070560:intron | 30.0% | |
AGATGAGGATGAAAAGAATT+TGG | + | chr5.3:28263771-28263790 | MS.gene070560:CDS | 30.0% | |
ATATAACACCATTGCAGAAT+TGG | + | chr5.3:28264565-28264584 | MS.gene070560:intron | 30.0% | |
ATGTAGCTTAAGATAAACAC+AGG | - | chr5.3:28264430-28264449 | None:intergenic | 30.0% | |
CCTTAAAAGTCAACACATAA+AGG | - | chr5.3:28264147-28264166 | None:intergenic | 30.0% | |
TATAACACCATTGCAGAATT+GGG | + | chr5.3:28264566-28264585 | MS.gene070560:intron | 30.0% | |
TATTCTCATTGGTACTACTT+TGG | - | chr5.3:28265057-28265076 | None:intergenic | 30.0% | |
! | GTTTGTTTGCTGAAGATTAT+AGG | + | chr5.3:28263734-28263753 | MS.gene070560:CDS | 30.0% |
! | TATTACTGCAATGTTGGTAA+TGG | + | chr5.3:28265105-28265124 | MS.gene070560:CDS | 30.0% |
! | TGATTTTATATAGCCTAAGC+TGG | + | chr5.3:28264079-28264098 | MS.gene070560:intron | 30.0% |
! | TTTGGGACACAACATATATT+CGG | + | chr5.3:28263988-28264007 | MS.gene070560:intron | 30.0% |
!! | GGTAATGTTTTGTTGCTATT+TGG | + | chr5.3:28264329-28264348 | MS.gene070560:intron | 30.0% |
!!! | CCTTTATGTGTTGACTTTTA+AGG | + | chr5.3:28264144-28264163 | MS.gene070560:intron | 30.0% |
!!! | TTGCTCCACTTTTAGTTTAT+TGG | + | chr5.3:28263683-28263702 | MS.gene070560:CDS | 30.0% |
!!! | TTGGGTTTTTGTTTTTGTGT+AGG | + | chr5.3:28265015-28265034 | MS.gene070560:intron | 30.0% |
!!! | TTTTTTGCTGTTGTAGATTC+TGG | + | chr5.3:28264308-28264327 | MS.gene070560:intron | 30.0% |
!!! | TTTTTTGTTTGTAGAGGGAT+TGG | + | chr5.3:28263919-28263938 | MS.gene070560:intron | 30.0% |
AAGAAAAAAATGGATGCTCG+AGG | - | chr5.3:28265316-28265335 | None:intergenic | 35.0% | |
AGACAAGTCAATGTTAGCAA+CGG | - | chr5.3:28264649-28264668 | None:intergenic | 35.0% | |
ATGAAACTCGAACAAATGAG+AGG | + | chr5.3:28263952-28263971 | MS.gene070560:intron | 35.0% | |
CTATACAATCATCCCATTGA+GGG | + | chr5.3:28265235-28265254 | MS.gene070560:CDS | 35.0% | |
CTCATTGTACCTTATTCGTT+TGG | + | chr5.3:28265208-28265227 | MS.gene070560:CDS | 35.0% | |
GAGAGTGAATGTGTTTGTAT+AGG | - | chr5.3:28265177-28265196 | None:intergenic | 35.0% | |
GCATCTGTAGAAACTATAGT+GGG | + | chr5.3:28264469-28264488 | MS.gene070560:intron | 35.0% | |
GGCAAAGGAGAAGAAAAAAA+TGG | - | chr5.3:28265326-28265345 | None:intergenic | 35.0% | |
GTTATGTGGGACAAAATCTT+AGG | + | chr5.3:28265487-28265506 | MS.gene070560:CDS | 35.0% | |
TAGACCTTGTAAACCTTACA+AGG | + | chr5.3:28265561-28265580 | MS.gene070560:CDS | 35.0% | |
TAGAGTTCAGAGCTAGATAT+GGG | + | chr5.3:28264267-28264286 | MS.gene070560:intron | 35.0% | |
TAGCCACTATTTAACAACAC+TGG | - | chr5.3:28264764-28264783 | None:intergenic | 35.0% | |
TATACAATCATCCCATTGAG+GGG | + | chr5.3:28265236-28265255 | MS.gene070560:CDS | 35.0% | |
TATAGAGCTCCAAACGAATA+AGG | - | chr5.3:28265220-28265239 | None:intergenic | 35.0% | |
TCATCCTTGTAAGGTTTACA+AGG | - | chr5.3:28265568-28265587 | None:intergenic | 35.0% | |
TCTATACAATCATCCCATTG+AGG | + | chr5.3:28265234-28265253 | MS.gene070560:CDS | 35.0% | |
TGCATCTGTAGAAACTATAG+TGG | + | chr5.3:28264468-28264487 | MS.gene070560:intron | 35.0% | |
TTAGAGTTCAGAGCTAGATA+TGG | + | chr5.3:28264266-28264285 | MS.gene070560:intron | 35.0% | |
TTGTCCCACATAACAAAGAA+CGG | - | chr5.3:28265481-28265500 | None:intergenic | 35.0% | |
! | ATATAGCCTAAGCTGGTTTA+TGG | + | chr5.3:28264086-28264105 | MS.gene070560:intron | 35.0% |
! | GCTTTATCTTTTCTCCTATC+TGG | + | chr5.3:28265283-28265302 | MS.gene070560:CDS | 35.0% |
! | TCACCAGTGTTGTTAAATAG+TGG | + | chr5.3:28264758-28264777 | MS.gene070560:intron | 35.0% |
! | TCATTTGTTCGAGTTTCATG+TGG | - | chr5.3:28263951-28263970 | None:intergenic | 35.0% |
!! | AAGGAGAGAAGTATTCTCAT+TGG | - | chr5.3:28265068-28265087 | None:intergenic | 35.0% |
!!! | GTTTTGTTGCTATTTGGCAT+AGG | + | chr5.3:28264335-28264354 | MS.gene070560:intron | 35.0% |
!!! | TTTGTTTTTGTGTAGGTGAC+AGG | + | chr5.3:28265022-28265041 | MS.gene070560:intron | 35.0% |
AAAAGATAAAGCTCCACCGA+TGG | - | chr5.3:28265275-28265294 | None:intergenic | 40.0% | |
AAACCTCCATAAACCAGCTT+AGG | - | chr5.3:28264095-28264114 | None:intergenic | 40.0% | |
ATTAGGACCCAATTCTGCAA+TGG | - | chr5.3:28264576-28264595 | None:intergenic | 40.0% | |
ATTGCAGAATTGGGTCCTAA+TGG | + | chr5.3:28264575-28264594 | MS.gene070560:intron | 40.0% | |
CAGCTATAGCATAGCGAATT+TGG | + | chr5.3:28264856-28264875 | MS.gene070560:intron | 40.0% | |
CTCTAATGAGTATGGCATGT+AGG | - | chr5.3:28265515-28265534 | None:intergenic | 40.0% | |
GCTCTCTTCTCTAATGAGTA+TGG | - | chr5.3:28265523-28265542 | None:intergenic | 40.0% | |
GGGTTTCTGATGAGATGTTA+GGG | + | chr5.3:28263656-28263675 | MS.gene070560:CDS | 40.0% | |
TAAACCACAGTGATCATCCA+CGG | - | chr5.3:28265359-28265378 | None:intergenic | 40.0% | |
TCATTAGAGAAGAGAGCTAG+TGG | + | chr5.3:28265526-28265545 | MS.gene070560:CDS | 40.0% | |
TCTTGAACGGGGAAAATAGA+GGG | - | chr5.3:28264886-28264905 | None:intergenic | 40.0% | |
TGGATGATCACTGTGGTTTA+TGG | + | chr5.3:28265359-28265378 | MS.gene070560:CDS | 40.0% | |
TTCATAAGTCCTAGCTCAAC+TGG | - | chr5.3:28264034-28264053 | None:intergenic | 40.0% | |
TTGGCTCAAAAACGCTTCAT+AGG | - | chr5.3:28264699-28264718 | None:intergenic | 40.0% | |
! | GCAACCGTTCTTTGTTATGT+GGG | + | chr5.3:28265474-28265493 | MS.gene070560:CDS | 40.0% |
! | GCTCTGAACTCTAAACAACT+AGG | - | chr5.3:28264260-28264279 | None:intergenic | 40.0% |
!! | ATCATCCACGGTTTTAATGG+TGG | - | chr5.3:28265347-28265366 | None:intergenic | 40.0% |
!! | CAATGTTGGTAATGGACACA+TGG | + | chr5.3:28265113-28265132 | MS.gene070560:CDS | 40.0% |
!! | GTGATCATCCACGGTTTTAA+TGG | - | chr5.3:28265350-28265369 | None:intergenic | 40.0% |
AAAACCGTGGATGATCACTG+TGG | + | chr5.3:28265352-28265371 | MS.gene070560:CDS | 45.0% | |
AACATGTGGAATAGGTTCCC+AGG | - | chr5.3:28265388-28265407 | None:intergenic | 45.0% | |
ACATGTGGAATAGGTTCCCA+GGG | - | chr5.3:28265387-28265406 | None:intergenic | 45.0% | |
AGCGTTGTCAACTCTTGAAC+GGG | - | chr5.3:28264898-28264917 | None:intergenic | 45.0% | |
ATCGTTAAGAAGCCCCTCAA+TGG | - | chr5.3:28265251-28265270 | None:intergenic | 45.0% | |
CAGCGTTGTCAACTCTTGAA+CGG | - | chr5.3:28264899-28264918 | None:intergenic | 45.0% | |
CTCTTGAACGGGGAAAATAG+AGG | - | chr5.3:28264887-28264906 | None:intergenic | 45.0% | |
CTTCTTAACGATACCATCGG+TGG | + | chr5.3:28265259-28265278 | MS.gene070560:CDS | 45.0% | |
CTTTGCCACCATTAAAACCG+TGG | + | chr5.3:28265339-28265358 | MS.gene070560:CDS | 45.0% | |
GACGTACACCATCAACTGTA+CGG | + | chr5.3:28265433-28265452 | MS.gene070560:CDS | 45.0% | |
GGGCTTCTTAACGATACCAT+CGG | + | chr5.3:28265256-28265275 | MS.gene070560:CDS | 45.0% | |
GGGGTTTCTGATGAGATGTT+AGG | + | chr5.3:28263655-28263674 | MS.gene070560:CDS | 45.0% | |
TAGCATTTGCCAGTTGAGCT+AGG | + | chr5.3:28264022-28264041 | MS.gene070560:intron | 45.0% | |
TCAACAAGCTGTTCAAGCTG+TGG | + | chr5.3:28263828-28263847 | MS.gene070560:CDS | 45.0% | |
TCGAACAAATGAGAGGTCCT+GGG | + | chr5.3:28263959-28263978 | MS.gene070560:intron | 45.0% | |
TCGTTAAGAAGCCCCTCAAT+GGG | - | chr5.3:28265250-28265269 | None:intergenic | 45.0% | |
TTAGAGAAGAGAGCTAGTGG+CGG | + | chr5.3:28265529-28265548 | MS.gene070560:CDS | 45.0% | |
! | ACTTGTTGCCGTACAGTTGA+TGG | - | chr5.3:28265444-28265463 | None:intergenic | 45.0% |
! | CGCAACCGTTCTTTGTTATG+TGG | + | chr5.3:28265473-28265492 | MS.gene070560:CDS | 45.0% |
! | TAGCCTAAGCTGGTTTATGG+AGG | + | chr5.3:28264089-28264108 | MS.gene070560:intron | 45.0% |
!! | CACGGTTTTAATGGTGGCAA+AGG | - | chr5.3:28265341-28265360 | None:intergenic | 45.0% |
ACTGTGGTTTATGGCTCCCT+GGG | + | chr5.3:28265368-28265387 | MS.gene070560:CDS | 50.0% | |
AGAGGTCCTGGGTTCGAATT+TGG | + | chr5.3:28263970-28263989 | MS.gene070560:intron | 50.0% | |
CTCGAACAAATGAGAGGTCC+TGG | + | chr5.3:28263958-28263977 | MS.gene070560:intron | 50.0% | |
CTCGAGGACTCATACCAGAT+AGG | - | chr5.3:28265300-28265319 | None:intergenic | 50.0% | |
GAGGTCCTGGGTTCGAATTT+GGG | + | chr5.3:28263971-28263990 | MS.gene070560:intron | 50.0% | |
GCGTTGTCAACTCTTGAACG+GGG | - | chr5.3:28264897-28264916 | None:intergenic | 50.0% | |
TGTGTCCCAAATTCGAACCC+AGG | - | chr5.3:28263979-28263998 | None:intergenic | 50.0% | |
!! | ACAGTTGATGGTGTACGTCG+TGG | - | chr5.3:28265432-28265451 | None:intergenic | 50.0% |
CACTGTGGTTTATGGCTCCC+TGG | + | chr5.3:28265367-28265386 | MS.gene070560:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 28263643 | 28265591 | 28263643 | ID=MS.gene070560 |
chr5.3 | mRNA | 28263643 | 28265591 | 28263643 | ID=MS.gene070560.t1;Parent=MS.gene070560 |
chr5.3 | exon | 28263643 | 28263870 | 28263643 | ID=MS.gene070560.t1.exon1;Parent=MS.gene070560.t1 |
chr5.3 | CDS | 28263643 | 28263870 | 28263643 | ID=cds.MS.gene070560.t1;Parent=MS.gene070560.t1 |
chr5.3 | exon | 28265037 | 28265591 | 28265037 | ID=MS.gene070560.t1.exon2;Parent=MS.gene070560.t1 |
chr5.3 | CDS | 28265037 | 28265591 | 28265037 | ID=cds.MS.gene070560.t1;Parent=MS.gene070560.t1 |
Gene Sequence |
Protein sequence |