Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55207.t1 | XP_003613744.1 | 97.7 | 261 | 6 | 0 | 1 | 261 | 3 | 263 | 2.40E-143 | 518.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55207.t1 | Q8VYI1 | 78.2 | 261 | 56 | 1 | 1 | 261 | 1 | 260 | 6.7e-118 | 424.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55207.t1 | B7FLU5 | 97.7 | 261 | 6 | 0 | 1 | 261 | 3 | 263 | 1.7e-143 | 518.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55207 | MS.gene02757 | PPI |
| MS.gene68324 | MS.gene55207 | PPI |
| MS.gene55207 | MS.gene070560 | PPI |
| MS.gene55207 | MS.gene003352 | PPI |
| MS.gene55207 | MS.gene02144 | PPI |
| MS.gene55207 | MS.gene08289 | PPI |
| MS.gene55207 | MS.gene027563 | PPI |
| MS.gene55207 | MS.gene032882 | PPI |
| MS.gene55207 | MS.gene77418 | PPI |
| MS.gene34901 | MS.gene55207 | PPI |
| MS.gene023338 | MS.gene55207 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55207.t1 | MTR_5g040320 | 97.701 | 261 | 6 | 0 | 1 | 261 | 3 | 263 | 0.0 | 531 |
| MS.gene55207.t1 | MTR_1g097310 | 67.200 | 250 | 79 | 2 | 7 | 256 | 8 | 254 | 1.41e-125 | 357 |
| MS.gene55207.t1 | MTR_1g097320 | 63.704 | 135 | 49 | 0 | 74 | 208 | 1 | 135 | 8.00e-61 | 189 |
| MS.gene55207.t1 | MTR_6g039970 | 27.536 | 207 | 132 | 8 | 37 | 236 | 52 | 247 | 1.62e-13 | 68.9 |
| MS.gene55207.t1 | MTR_8g063210 | 27.488 | 211 | 135 | 8 | 37 | 240 | 52 | 251 | 2.26e-13 | 68.6 |
| MS.gene55207.t1 | MTR_5g035190 | 28.251 | 223 | 141 | 9 | 37 | 251 | 52 | 263 | 4.89e-13 | 67.8 |
| MS.gene55207.t1 | MTR_5g035190 | 29.557 | 203 | 127 | 8 | 57 | 251 | 15 | 209 | 7.26e-13 | 66.2 |
| MS.gene55207.t1 | MTR_4g102060 | 31.788 | 151 | 94 | 4 | 99 | 245 | 129 | 274 | 9.75e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55207.t1 | AT1G14290 | 76.538 | 260 | 60 | 1 | 2 | 261 | 1 | 259 | 7.05e-155 | 431 |
| MS.gene55207.t1 | AT1G69640 | 78.161 | 261 | 56 | 1 | 1 | 261 | 1 | 260 | 2.47e-146 | 410 |
| MS.gene55207.t1 | AT1G14290 | 82.065 | 184 | 33 | 0 | 78 | 261 | 2 | 185 | 1.96e-116 | 331 |
| MS.gene55207.t1 | AT2G29390 | 26.818 | 220 | 135 | 8 | 34 | 236 | 49 | 259 | 2.65e-12 | 65.5 |
Find 58 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGAGGATGAAAAGAATT+TGG | 0.229606 | 5.2:+30302224 | MS.gene55207:CDS |
| TCTAAGTTTGATGTTGTTAA+AGG | 0.231277 | 5.2:+30302249 | MS.gene55207:CDS |
| TTAGTTTATTGGATTTATTC+TGG | 0.243045 | 5.2:+30302147 | MS.gene55207:CDS |
| GGGGTTTCTGATGAGATGTT+AGG | 0.282336 | 5.2:+30302108 | MS.gene55207:CDS |
| GATTGTTTGCTGAAGATTAT+AGG | 0.295856 | 5.2:+30302187 | MS.gene55207:CDS |
| GTGAGAAATGATGATGGATT+TGG | 0.339892 | 5.2:+30302086 | None:intergenic |
| CGCAACCGTTCTTTGTTATG+TGG | 0.347193 | 5.2:+30303877 | MS.gene55207:CDS |
| TGAGAAATGATGATGGATTT+GGG | 0.363593 | 5.2:+30302087 | None:intergenic |
| TGTTATGTGGGACAAAATCT+TGG | 0.373501 | 5.2:+30303890 | MS.gene55207:CDS |
| GCTCTCTTCTCTAATGAGTA+TGG | 0.377222 | 5.2:-30303924 | None:intergenic |
| ACTTGTTGCCATAGAGTTGA+TGG | 0.384131 | 5.2:-30303845 | None:intergenic |
| AAACATATGGAATAGGTTCC+CGG | 0.385876 | 5.2:-30303790 | None:intergenic |
| GTATAGAGCTCCGAATGAAT+AGG | 0.404015 | 5.2:-30303622 | None:intergenic |
| CACTGTGGGTTATGGCTCCC+CGG | 0.405331 | 5.2:+30303771 | MS.gene55207:CDS |
| TATTACTGCAATGTTGGTAA+TGG | 0.409424 | 5.2:+30303509 | MS.gene55207:CDS |
| GGGTTTCTGATGAGATGTTA+GGG | 0.418518 | 5.2:+30302109 | MS.gene55207:CDS |
| TATTCTCATTGGTACTACTT+TGG | 0.419651 | 5.2:-30303458 | None:intergenic |
| ACAATTTATTACTGCAATGT+TGG | 0.438454 | 5.2:+30303503 | MS.gene55207:CDS |
| CTCATTGTACCCTATTCATT+CGG | 0.441933 | 5.2:+30303612 | MS.gene55207:CDS |
| TATAGAGCTCCGAATGAATA+GGG | 0.448863 | 5.2:-30303621 | None:intergenic |
| TAAATCCAATAAACTAAAAG+TGG | 0.460414 | 5.2:-30302141 | None:intergenic |
| GTTATGTGGGACAAAATCTT+GGG | 0.464199 | 5.2:+30303891 | MS.gene55207:CDS |
| TGGATGACCACTGTGGGTTA+TGG | 0.479214 | 5.2:+30303763 | MS.gene55207:CDS |
| GAGAGTGAATGTGTTTGTAT+AGG | 0.484907 | 5.2:-30303578 | None:intergenic |
| TCATCCTTGTACGCTTTACA+AGG | 0.487138 | 5.2:-30303969 | None:intergenic |
| GATGTGCACCATCAACTCTA+TGG | 0.489945 | 5.2:+30303837 | MS.gene55207:CDS |
| GTCGTTAAGAAGTCCCTCAA+TGG | 0.496386 | 5.2:-30303652 | None:intergenic |
| AACATATGGAATAGGTTCCC+GGG | 0.508139 | 5.2:-30303789 | None:intergenic |
| AAGGAGAGAAGTATTCTCAT+TGG | 0.524581 | 5.2:-30303469 | None:intergenic |
| GCAACCGTTCTTTGTTATGT+GGG | 0.527794 | 5.2:+30303878 | MS.gene55207:CDS |
| TAGACCTTGTAAAGCGTACA+AGG | 0.528888 | 5.2:+30303965 | MS.gene55207:CDS |
| AAAACTTACTGCAAACAAAA+GGG | 0.533273 | 5.2:-30302310 | None:intergenic |
| GGCAAAGGAGAAGAAGAAGA+TGG | 0.533954 | 5.2:-30303727 | None:intergenic |
| TCGTTAAGAAGTCCCTCAAT+GGG | 0.535059 | 5.2:-30303651 | None:intergenic |
| CTATACAATCATCCCATTGA+GGG | 0.543130 | 5.2:+30303639 | MS.gene55207:CDS |
| AGAGTTGATGGTGCACATCA+TGG | 0.543272 | 5.2:-30303833 | None:intergenic |
| CTCGAGGACTCATACCAGAT+AGG | 0.552424 | 5.2:-30303701 | None:intergenic |
| CTCTAATGAGTATGGCATGT+AGG | 0.553171 | 5.2:-30303916 | None:intergenic |
| GGACTTCTTAACGACACAAT+CGG | 0.555283 | 5.2:+30303660 | MS.gene55207:CDS |
| TTGTCCCACATAACAAAGAA+CGG | 0.560325 | 5.2:-30303882 | None:intergenic |
| TCTATACAATCATCCCATTG+AGG | 0.576655 | 5.2:+30303638 | MS.gene55207:CDS |
| ACTGTGGGTTATGGCTCCCC+GGG | 0.583248 | 5.2:+30303772 | MS.gene55207:CDS |
| TCATTAGAGAAGAGAGCTAG+TGG | 0.591020 | 5.2:+30303930 | MS.gene55207:CDS |
| GGGTCTGTGAGAAATGATGA+TGG | 0.613218 | 5.2:+30302080 | None:intergenic |
| CAATGTTGGTAATGGACACA+TGG | 0.623258 | 5.2:+30303517 | MS.gene55207:CDS |
| TAAATTGTCTTGCTAAAACA+AGG | 0.626413 | 5.2:-30303488 | None:intergenic |
| CTTTGCCACAATTAAAACCG+TGG | 0.628473 | 5.2:+30303743 | MS.gene55207:CDS |
| AAACCGTGGATGACCACTGT+GGG | 0.635025 | 5.2:+30303757 | MS.gene55207:CDS |
| TAACCCACAGTGGTCATCCA+CGG | 0.641389 | 5.2:-30303760 | None:intergenic |
| GTTACATACAAAGAAAGATG+AGG | 0.653839 | 5.2:+30302209 | MS.gene55207:CDS |
| GAGAAATGATGATGGATTTG+GGG | 0.658168 | 5.2:+30302088 | None:intergenic |
| ACATATGGAATAGGTTCCCG+GGG | 0.664355 | 5.2:-30303788 | None:intergenic |
| AAGAAGAAGATGGAAGCTCG+AGG | 0.675074 | 5.2:-30303717 | None:intergenic |
| TTAGAGAAGAGAGCTAGTGG+TGG | 0.681078 | 5.2:+30303933 | MS.gene55207:CDS |
| AGAAATGATGATGGATTTGG+GGG | 0.693054 | 5.2:+30302089 | None:intergenic |
| AAAACCGTGGATGACCACTG+TGG | 0.720859 | 5.2:+30303756 | MS.gene55207:CDS |
| CTTCTTAACGACACAATCGG+CGG | 0.737880 | 5.2:+30303663 | MS.gene55207:CDS |
| CGGGGAGCCATAACCCACAG+TGG | 0.739828 | 5.2:-30303770 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTCTAATTTTTGAAA+TGG | - | chr5.2:30303054-30303073 | None:intergenic | 10.0% |
| !!! | AATTGTTATTGAAAAACATA+TGG | - | chr5.2:30303806-30303825 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTGTTTGTAGA+GGG | + | chr5.2:30302359-30302378 | MS.gene55207:intron | 15.0% |
| !! | TAAATCCAATAAACTAAAAG+TGG | - | chr5.2:30302144-30302163 | None:intergenic | 20.0% |
| !! | TATTGAAAAACATATGGAAT+AGG | - | chr5.2:30303800-30303819 | None:intergenic | 20.0% |
| !! | TGTATAACATATTACCTTTA+AGG | - | chr5.2:30302942-30302961 | None:intergenic | 20.0% |
| !! | TTAGTTTATTGGATTTATTC+TGG | + | chr5.2:30302147-30302166 | MS.gene55207:CDS | 20.0% |
| !!! | GATTTTTTTTTTGTTTGTAG+AGG | + | chr5.2:30302358-30302377 | MS.gene55207:intron | 20.0% |
| ! | AAAAACTTACTGCAAACAAA+AGG | - | chr5.2:30302314-30302333 | None:intergenic | 25.0% |
| ! | AAAACTTACTGCAAACAAAA+GGG | - | chr5.2:30302313-30302332 | None:intergenic | 25.0% |
| ! | AAACATAGTATTTGCAAAAG+AGG | - | chr5.2:30302680-30302699 | None:intergenic | 25.0% |
| ! | AACATAGTATTTGCAAAAGA+GGG | - | chr5.2:30302679-30302698 | None:intergenic | 25.0% |
| ! | AATTAATGAATCTCTTGAGT+TGG | + | chr5.2:30302813-30302832 | MS.gene55207:intron | 25.0% |
| ! | ACAATTTATTACTGCAATGT+TGG | + | chr5.2:30303503-30303522 | MS.gene55207:CDS | 25.0% |
| ! | CTTAAAAGTCAACACATAAA+GGG | - | chr5.2:30302591-30302610 | None:intergenic | 25.0% |
| ! | GCTTAATGAATTGATCTATT+TGG | + | chr5.2:30302564-30302583 | MS.gene55207:intron | 25.0% |
| ! | TAAATTGTCTTGCTAAAACA+AGG | - | chr5.2:30303491-30303510 | None:intergenic | 25.0% |
| ! | TCTAAGTTTGATGTTGTTAA+AGG | + | chr5.2:30302249-30302268 | MS.gene55207:CDS | 25.0% |
| ! | TGAAGTAATGAAGTTGTTAT+TGG | + | chr5.2:30303400-30303419 | MS.gene55207:intron | 25.0% |
| !! | AAGTTTCTTTTACTCAAGAA+AGG | + | chr5.2:30302970-30302989 | MS.gene55207:intron | 25.0% |
| !! | GAAGTAATGAAGTTGTTATT+GGG | + | chr5.2:30303401-30303420 | MS.gene55207:intron | 25.0% |
| !! | TGATTTTATATTACCTAAGC+TGG | + | chr5.2:30302524-30302543 | MS.gene55207:intron | 25.0% |
| !!! | GATAAGGTTTTGTTTCTATT+TGG | + | chr5.2:30302778-30302797 | MS.gene55207:intron | 25.0% |
| !!! | TCTGGTTTTTATGTTGTTTT+GGG | + | chr5.2:30302165-30302184 | MS.gene55207:CDS | 25.0% |
| !!! | TTAACAATTTTAGCATATGC+CGG | + | chr5.2:30302457-30302476 | MS.gene55207:intron | 25.0% |
| !!! | TTCTGGTTTTTATGTTGTTT+TGG | + | chr5.2:30302164-30302183 | MS.gene55207:CDS | 25.0% |
| ACTTATCTCAATCAGTTTAG+AGG | + | chr5.2:30303099-30303118 | MS.gene55207:intron | 30.0% | |
| AGATAAGTCAATGTTAGCAA+TGG | - | chr5.2:30303087-30303106 | None:intergenic | 30.0% | |
| AGATGAGGATGAAAAGAATT+TGG | + | chr5.2:30302224-30302243 | MS.gene55207:CDS | 30.0% | |
| AGTAAAATCCACACAAGATT+TGG | - | chr5.2:30303158-30303177 | None:intergenic | 30.0% | |
| CAGAATCTACAACAGTAAAA+AGG | - | chr5.2:30302759-30302778 | None:intergenic | 30.0% | |
| CCTTAAAAGTCAACACATAA+AGG | - | chr5.2:30302592-30302611 | None:intergenic | 30.0% | |
| GAATCTGTAGATACTATAGT+GGG | + | chr5.2:30302905-30302924 | MS.gene55207:intron | 30.0% | |
| GTTACATACAAAGAAAGATG+AGG | + | chr5.2:30302209-30302228 | MS.gene55207:CDS | 30.0% | |
| TACTAGTAATTCATAAGTCC+TGG | - | chr5.2:30302488-30302507 | None:intergenic | 30.0% | |
| TACTGTTGTAGATTCTGATA+AGG | + | chr5.2:30302762-30302781 | MS.gene55207:intron | 30.0% | |
| TATTCTCATTGGTACTACTT+TGG | - | chr5.2:30303461-30303480 | None:intergenic | 30.0% | |
| TGAATCTGTAGATACTATAG+TGG | + | chr5.2:30302904-30302923 | MS.gene55207:intron | 30.0% | |
| TTAGAGTTCAGAGCTAAATA+GGG | + | chr5.2:30302711-30302730 | MS.gene55207:intron | 30.0% | |
| ! | ATATTACCTAAGCTGGTTTA+TGG | + | chr5.2:30302531-30302550 | MS.gene55207:intron | 30.0% |
| ! | ATCTTGTGTGGATTTTACTT+TGG | + | chr5.2:30303159-30303178 | MS.gene55207:intron | 30.0% |
| ! | GATTGTTTGCTGAAGATTAT+AGG | + | chr5.2:30302187-30302206 | MS.gene55207:CDS | 30.0% |
| ! | TATTACTGCAATGTTGGTAA+TGG | + | chr5.2:30303509-30303528 | MS.gene55207:CDS | 30.0% |
| ! | TTTAGAGTTCAGAGCTAAAT+AGG | + | chr5.2:30302710-30302729 | MS.gene55207:intron | 30.0% |
| ! | TTTGGGACACAACATATATT+CGG | + | chr5.2:30302433-30302452 | MS.gene55207:intron | 30.0% |
| !! | TAGATACTATAGTGGGTTAT+AGG | + | chr5.2:30302912-30302931 | MS.gene55207:intron | 30.0% |
| !!! | CCTTTATGTGTTGACTTTTA+AGG | + | chr5.2:30302589-30302608 | MS.gene55207:intron | 30.0% |
| !!! | TTGCAGTAAGTTTTTTGTGA+TGG | + | chr5.2:30302319-30302338 | MS.gene55207:intron | 30.0% |
| !!! | TTGCTCCACTTTTAGTTTAT+TGG | + | chr5.2:30302136-30302155 | MS.gene55207:CDS | 30.0% |
| !!! | TTGGGTTTTTGTTTTTGTGT+AGG | + | chr5.2:30303419-30303438 | MS.gene55207:intron | 30.0% |
| !!! | TTTTTTGTTTGTAGAGGGAT+TGG | + | chr5.2:30302364-30302383 | MS.gene55207:intron | 30.0% |
| AAACATATGGAATAGGTTCC+CGG | - | chr5.2:30303793-30303812 | None:intergenic | 35.0% | |
| AAGAACAACTCATAACCACT+AGG | - | chr5.2:30303031-30303050 | None:intergenic | 35.0% | |
| ATATAACACCATTGCAGACT+TGG | + | chr5.2:30303003-30303022 | MS.gene55207:intron | 35.0% | |
| ATGAAACTCGAACAAATGAG+AGG | + | chr5.2:30302397-30302416 | MS.gene55207:intron | 35.0% | |
| CTATACAATCATCCCATTGA+GGG | + | chr5.2:30303639-30303658 | MS.gene55207:CDS | 35.0% | |
| CTATCGCTTAAGATAAACAC+AGG | - | chr5.2:30302878-30302897 | None:intergenic | 35.0% | |
| CTCATTGTACCCTATTCATT+CGG | + | chr5.2:30303612-30303631 | MS.gene55207:CDS | 35.0% | |
| GAGAGTGAATGTGTTTGTAT+AGG | - | chr5.2:30303581-30303600 | None:intergenic | 35.0% | |
| GTTATGTGGGACAAAATCTT+GGG | + | chr5.2:30303891-30303910 | MS.gene55207:CDS | 35.0% | |
| TATAACACCATTGCAGACTT+GGG | + | chr5.2:30303004-30303023 | MS.gene55207:intron | 35.0% | |
| TATAGAGCTCCGAATGAATA+GGG | - | chr5.2:30303624-30303643 | None:intergenic | 35.0% | |
| TCACTACTGTTGTCAAATAG+CGG | + | chr5.2:30303198-30303217 | MS.gene55207:intron | 35.0% | |
| TCTATACAATCATCCCATTG+AGG | + | chr5.2:30303638-30303657 | MS.gene55207:CDS | 35.0% | |
| TCTGGAAAGTGGAAAATAGA+GGG | - | chr5.2:30303327-30303346 | None:intergenic | 35.0% | |
| TGTTATGTGGGACAAAATCT+TGG | + | chr5.2:30303890-30303909 | MS.gene55207:CDS | 35.0% | |
| TTATACAGCATTGTCAACTC+TGG | - | chr5.2:30303345-30303364 | None:intergenic | 35.0% | |
| TTGTCCCACATAACAAAGAA+CGG | - | chr5.2:30303885-30303904 | None:intergenic | 35.0% | |
| ! | GCTTTATCTTTTCTCCTATC+TGG | + | chr5.2:30303687-30303706 | MS.gene55207:CDS | 35.0% |
| ! | TCATTTGTTCGAGTTTCATG+TGG | - | chr5.2:30302396-30302415 | None:intergenic | 35.0% |
| !! | AAGGAGAGAAGTATTCTCAT+TGG | - | chr5.2:30303472-30303491 | None:intergenic | 35.0% |
| !!! | TTTGTTTTTGTGTAGGTGAC+AGG | + | chr5.2:30303426-30303445 | MS.gene55207:intron | 35.0% |
| AAACCTCCATAAACCAGCTT+AGG | - | chr5.2:30302540-30302559 | None:intergenic | 40.0% | |
| AACATATGGAATAGGTTCCC+GGG | - | chr5.2:30303792-30303811 | None:intergenic | 40.0% | |
| CTCTAATGAGTATGGCATGT+AGG | - | chr5.2:30303919-30303938 | None:intergenic | 40.0% | |
| CTGGAAAGTGGAAAATAGAG+GGG | - | chr5.2:30303326-30303345 | None:intergenic | 40.0% | |
| CTTTGCCACAATTAAAACCG+TGG | + | chr5.2:30303743-30303762 | MS.gene55207:CDS | 40.0% | |
| GCTCTCTTCTCTAATGAGTA+TGG | - | chr5.2:30303927-30303946 | None:intergenic | 40.0% | |
| GGACTTCTTAACGACACAAT+CGG | + | chr5.2:30303660-30303679 | MS.gene55207:CDS | 40.0% | |
| GGGTTATAGGAACTCCTTAA+AGG | + | chr5.2:30302925-30302944 | MS.gene55207:intron | 40.0% | |
| GGGTTTCTGATGAGATGTTA+GGG | + | chr5.2:30302109-30302128 | MS.gene55207:CDS | 40.0% | |
| GTATAGAGCTCCGAATGAAT+AGG | - | chr5.2:30303625-30303644 | None:intergenic | 40.0% | |
| TAGACCTTGTAAAGCGTACA+AGG | + | chr5.2:30303965-30303984 | MS.gene55207:CDS | 40.0% | |
| TCATCCTTGTACGCTTTACA+AGG | - | chr5.2:30303972-30303991 | None:intergenic | 40.0% | |
| TCATTAGAGAAGAGAGCTAG+TGG | + | chr5.2:30303930-30303949 | MS.gene55207:CDS | 40.0% | |
| TCGTTAAGAAGTCCCTCAAT+GGG | - | chr5.2:30303654-30303673 | None:intergenic | 40.0% | |
| ! | ACTTGTTGCCATAGAGTTGA+TGG | - | chr5.2:30303848-30303867 | None:intergenic | 40.0% |
| ! | CTCTGGAAAGTGGAAAATAG+AGG | - | chr5.2:30303328-30303347 | None:intergenic | 40.0% |
| ! | GCAACCGTTCTTTGTTATGT+GGG | + | chr5.2:30303878-30303897 | MS.gene55207:CDS | 40.0% |
| ! | GCTCTGAACTCTAAACAACT+AGG | - | chr5.2:30302705-30302724 | None:intergenic | 40.0% |
| ! | TTACCTAAGCTGGTTTATGG+AGG | + | chr5.2:30302534-30302553 | MS.gene55207:intron | 40.0% |
| !! | CAATGTTGGTAATGGACACA+TGG | + | chr5.2:30303517-30303536 | MS.gene55207:CDS | 40.0% |
| !! | TTTTCGAGCCAAATCTTGTG+TGG | + | chr5.2:30303147-30303166 | MS.gene55207:intron | 40.0% |
| !!! | CACGGTTTTAATTGTGGCAA+AGG | - | chr5.2:30303745-30303764 | None:intergenic | 40.0% |
| !!! | GTCATCCACGGTTTTAATTG+TGG | - | chr5.2:30303751-30303770 | None:intergenic | 40.0% |
| AAGAAGAAGATGGAAGCTCG+AGG | - | chr5.2:30303720-30303739 | None:intergenic | 45.0% | |
| ACATATGGAATAGGTTCCCG+GGG | - | chr5.2:30303791-30303810 | None:intergenic | 45.0% | |
| CTTCTTAACGACACAATCGG+CGG | + | chr5.2:30303663-30303682 | MS.gene55207:CDS | 45.0% | |
| GATGTGCACCATCAACTCTA+TGG | + | chr5.2:30303837-30303856 | MS.gene55207:CDS | 45.0% | |
| GGCAAAGGAGAAGAAGAAGA+TGG | - | chr5.2:30303730-30303749 | None:intergenic | 45.0% | |
| GGGGTTTCTGATGAGATGTT+AGG | + | chr5.2:30302108-30302127 | MS.gene55207:CDS | 45.0% | |
| GTCGTTAAGAAGTCCCTCAA+TGG | - | chr5.2:30303655-30303674 | None:intergenic | 45.0% | |
| TCGAACAAATGAGAGGTCCT+GGG | + | chr5.2:30302404-30302423 | MS.gene55207:intron | 45.0% | |
| TTAGAGAAGAGAGCTAGTGG+TGG | + | chr5.2:30303933-30303952 | MS.gene55207:CDS | 45.0% | |
| TTCATAAGTCCTGGCTCAAC+CGG | - | chr5.2:30302479-30302498 | None:intergenic | 45.0% | |
| ! | CGCAACCGTTCTTTGTTATG+TGG | + | chr5.2:30303877-30303896 | MS.gene55207:CDS | 45.0% |
| ! | GCATTGTCAACTCTGGAAAG+TGG | - | chr5.2:30303338-30303357 | None:intergenic | 45.0% |
| !! | AGAGTTGATGGTGCACATCA+TGG | - | chr5.2:30303836-30303855 | None:intergenic | 45.0% |
| AAAACCGTGGATGACCACTG+TGG | + | chr5.2:30303756-30303775 | MS.gene55207:CDS | 50.0% | |
| AAACCGTGGATGACCACTGT+GGG | + | chr5.2:30303757-30303776 | MS.gene55207:CDS | 50.0% | |
| ACTAGGACCCAAGTCTGCAA+TGG | - | chr5.2:30303014-30303033 | None:intergenic | 50.0% | |
| AGAGGTCCTGGGTTCGAATT+TGG | + | chr5.2:30302415-30302434 | MS.gene55207:intron | 50.0% | |
| ATTGCAGACTTGGGTCCTAG+TGG | + | chr5.2:30303013-30303032 | MS.gene55207:intron | 50.0% | |
| CTCGAACAAATGAGAGGTCC+TGG | + | chr5.2:30302403-30302422 | MS.gene55207:intron | 50.0% | |
| CTCGAGGACTCATACCAGAT+AGG | - | chr5.2:30303704-30303723 | None:intergenic | 50.0% | |
| GAGGTCCTGGGTTCGAATTT+GGG | + | chr5.2:30302416-30302435 | MS.gene55207:intron | 50.0% | |
| TAACCCACAGTGGTCATCCA+CGG | - | chr5.2:30303763-30303782 | None:intergenic | 50.0% | |
| TGTGTCCCAAATTCGAACCC+AGG | - | chr5.2:30302424-30302443 | None:intergenic | 50.0% | |
| ! | TGGATGACCACTGTGGGTTA+TGG | + | chr5.2:30303763-30303782 | MS.gene55207:CDS | 50.0% |
| ! | TAGCATATGCCGGTTGAGCC+AGG | + | chr5.2:30302467-30302486 | MS.gene55207:intron | 55.0% |
| ! | ACTGTGGGTTATGGCTCCCC+GGG | + | chr5.2:30303772-30303791 | MS.gene55207:CDS | 60.0% |
| ! | CACTGTGGGTTATGGCTCCC+CGG | + | chr5.2:30303771-30303790 | MS.gene55207:CDS | 60.0% |
| CGGGGAGCCATAACCCACAG+TGG | - | chr5.2:30303773-30303792 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 30302093 | 30303995 | 30302093 | ID=MS.gene55207 |
| chr5.2 | mRNA | 30302093 | 30303995 | 30302093 | ID=MS.gene55207.t1;Parent=MS.gene55207 |
| chr5.2 | exon | 30302093 | 30302323 | 30302093 | ID=MS.gene55207.t1.exon1;Parent=MS.gene55207.t1 |
| chr5.2 | CDS | 30302093 | 30302323 | 30302093 | ID=cds.MS.gene55207.t1;Parent=MS.gene55207.t1 |
| chr5.2 | exon | 30303441 | 30303995 | 30303441 | ID=MS.gene55207.t1.exon2;Parent=MS.gene55207.t1 |
| chr5.2 | CDS | 30303441 | 30303995 | 30303441 | ID=cds.MS.gene55207.t1;Parent=MS.gene55207.t1 |
| Gene Sequence |
| Protein sequence |