Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77418.t1 | XP_003613744.1 | 97.7 | 263 | 6 | 0 | 1 | 263 | 1 | 263 | 1.30E-144 | 522.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77418.t1 | Q8VYI1 | 77.4 | 261 | 58 | 1 | 3 | 263 | 1 | 260 | 7.4e-117 | 421.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77418.t1 | B7FLU5 | 97.7 | 263 | 6 | 0 | 1 | 263 | 1 | 263 | 9.3e-145 | 522.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene77418 | 0.811371 | 7.24E-51 | -1.69E-46 |
| MS.gene051043 | MS.gene77418 | 0.836172 | 1.09E-56 | -1.69E-46 |
| MS.gene052118 | MS.gene77418 | 0.801795 | 7.61E-49 | -1.69E-46 |
| MS.gene054489 | MS.gene77418 | 0.823804 | 1.14E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene77418 | 0.813531 | 2.44E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene77418 | 0.811676 | 6.21E-51 | -1.69E-46 |
| MS.gene055229 | MS.gene77418 | 0.815069 | 1.12E-51 | -1.69E-46 |
| MS.gene056677 | MS.gene77418 | 0.804443 | 2.16E-49 | -1.69E-46 |
| MS.gene058279 | MS.gene77418 | 0.821682 | 3.55E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene77418 | 0.810461 | 1.14E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene77418 | 0.814226 | 1.72E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68324 | MS.gene77418 | PPI |
| MS.gene77418 | MS.gene027563 | PPI |
| MS.gene77418 | MS.gene02757 | PPI |
| MS.gene02144 | MS.gene77418 | PPI |
| MS.gene77418 | MS.gene070560 | PPI |
| MS.gene08289 | MS.gene77418 | PPI |
| MS.gene003352 | MS.gene77418 | PPI |
| MS.gene032882 | MS.gene77418 | PPI |
| MS.gene55207 | MS.gene77418 | PPI |
| MS.gene34901 | MS.gene77418 | PPI |
| MS.gene023338 | MS.gene77418 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77418.t1 | MTR_5g040320 | 97.719 | 263 | 6 | 0 | 1 | 263 | 1 | 263 | 0.0 | 535 |
| MS.gene77418.t1 | MTR_1g097310 | 67.200 | 250 | 79 | 2 | 9 | 258 | 8 | 254 | 2.32e-125 | 357 |
| MS.gene77418.t1 | MTR_1g097320 | 63.704 | 135 | 49 | 0 | 76 | 210 | 1 | 135 | 1.07e-60 | 188 |
| MS.gene77418.t1 | MTR_6g039970 | 27.536 | 207 | 132 | 8 | 39 | 238 | 52 | 247 | 1.79e-13 | 68.9 |
| MS.gene77418.t1 | MTR_8g063210 | 27.488 | 211 | 135 | 8 | 39 | 242 | 52 | 251 | 2.47e-13 | 68.6 |
| MS.gene77418.t1 | MTR_5g035190 | 28.251 | 223 | 141 | 9 | 39 | 253 | 52 | 263 | 5.60e-13 | 67.4 |
| MS.gene77418.t1 | MTR_5g035190 | 29.557 | 203 | 127 | 8 | 59 | 253 | 15 | 209 | 7.32e-13 | 66.2 |
| MS.gene77418.t1 | MTR_4g102060 | 31.788 | 151 | 94 | 4 | 101 | 247 | 129 | 274 | 9.36e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77418.t1 | AT1G14290 | 77.255 | 255 | 57 | 1 | 9 | 263 | 6 | 259 | 4.91e-153 | 427 |
| MS.gene77418.t1 | AT1G69640 | 77.395 | 261 | 58 | 1 | 3 | 263 | 1 | 260 | 2.42e-144 | 405 |
| MS.gene77418.t1 | AT1G14290 | 82.065 | 184 | 33 | 0 | 80 | 263 | 2 | 185 | 8.87e-116 | 330 |
| MS.gene77418.t1 | AT2G29390 | 26.818 | 220 | 135 | 8 | 36 | 238 | 49 | 259 | 3.00e-12 | 65.5 |
Find 56 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACGATGGATTTGGATTT+GGG | 0.217937 | 5.1:+30431781 | MS.gene77418:CDS |
| AGATGAGGATGAAAAGAATT+TGG | 0.229606 | 5.1:+30431918 | MS.gene77418:CDS |
| TCTAAGTTTGATGTTGTTAA+AGG | 0.231277 | 5.1:+30431943 | MS.gene77418:CDS |
| TTAGTTTATTGGATTTATTC+TGG | 0.243045 | 5.1:+30431841 | MS.gene77418:CDS |
| GTTATGTGGGACAAAATCTT+AGG | 0.269390 | 5.1:+30433724 | MS.gene77418:CDS |
| GGGGTTTCTGATGAGATGTT+AGG | 0.282336 | 5.1:+30431802 | MS.gene77418:CDS |
| AATGACGATGGATTTGGATT+TGG | 0.283990 | 5.1:+30431780 | None:intergenic |
| GATTGTTTGCTGAAGATTAT+AGG | 0.295856 | 5.1:+30431881 | MS.gene77418:CDS |
| CTCATTGTACCCTATTCATT+TGG | 0.307133 | 5.1:+30433445 | MS.gene77418:CDS |
| TATTACTGCAATGTTGGTTA+TGG | 0.324111 | 5.1:+30433342 | MS.gene77418:CDS |
| CGCAACCGTTCTTTGTTATG+TGG | 0.347193 | 5.1:+30433710 | MS.gene77418:CDS |
| TGGATGATCACTGTGGTTTA+TGG | 0.355678 | 5.1:+30433596 | MS.gene77418:CDS |
| CACTGTGGTTTATGGCTCCC+TGG | 0.364308 | 5.1:+30433604 | MS.gene77418:CDS |
| GTGAGAAATGACGATGGATT+TGG | 0.373575 | 5.1:+30431774 | None:intergenic |
| GCTCTCTTCTCTAATGAGTA+TGG | 0.377222 | 5.1:-30433757 | None:intergenic |
| GTATAGAGCTCCAAATGAAT+AGG | 0.386213 | 5.1:-30433455 | None:intergenic |
| ATTACTCATTCATCCTTGTA+AGG | 0.397174 | 5.1:-30433811 | None:intergenic |
| ACTTGTTGCCATACAGTTGA+TGG | 0.408130 | 5.1:-30433678 | None:intergenic |
| GGGTTTCTGATGAGATGTTA+GGG | 0.418518 | 5.1:+30431803 | MS.gene77418:CDS |
| TATTCTCATTGGTACTACTT+TGG | 0.419651 | 5.1:-30433291 | None:intergenic |
| GAGAGTGAATATGTTTGTAT+AGG | 0.425444 | 5.1:-30433411 | None:intergenic |
| ACAATTTATTACTGCAATGT+TGG | 0.447512 | 5.1:+30433336 | MS.gene77418:CDS |
| TATAGAGCTCCAAATGAATA+GGG | 0.457129 | 5.1:-30433454 | None:intergenic |
| TAAATCCAATAAACTAAAAG+TGG | 0.460414 | 5.1:-30431835 | None:intergenic |
| TCATCCTTGTAAGGTTTACA+AGG | 0.487494 | 5.1:-30433802 | None:intergenic |
| GACGTACACCATCAACTGTA+TGG | 0.503202 | 5.1:+30433670 | MS.gene77418:CDS |
| ACTGTGGTTTATGGCTCCCT+GGG | 0.512563 | 5.1:+30433605 | MS.gene77418:CDS |
| AACATGTGGAATAGGTTCCC+AGG | 0.518779 | 5.1:-30433622 | None:intergenic |
| AAGGAGAGAAGTATTCTCAT+TGG | 0.524581 | 5.1:-30433302 | None:intergenic |
| GCAACCGTTCTTTGTTATGT+GGG | 0.527794 | 5.1:+30433711 | MS.gene77418:CDS |
| AAAACTTACTGCAAACAAAA+GGG | 0.533273 | 5.1:-30432004 | None:intergenic |
| GTCGTTAAGAAGCCCCTCGA+TGG | 0.546173 | 5.1:-30433485 | None:intergenic |
| GACGATGGATTTGGATTTGG+GGG | 0.549217 | 5.1:+30431783 | MS.gene77418:CDS |
| CTCGAGGACTCATACCAGAT+AGG | 0.552424 | 5.1:-30433534 | None:intergenic |
| CTCTAATGAGTATGGCATGT+AGG | 0.553171 | 5.1:-30433749 | None:intergenic |
| TAGACCTTGTAAACCTTACA+AGG | 0.553677 | 5.1:+30433798 | MS.gene77418:CDS |
| TGACGATGGATTTGGATTTG+GGG | 0.554615 | 5.1:+30431782 | MS.gene77418:CDS |
| GGGCTTCTTAACGACACAAT+CGG | 0.557579 | 5.1:+30433493 | MS.gene77418:CDS |
| CTATACAATCATCCCATCGA+GGG | 0.559905 | 5.1:+30433472 | MS.gene77418:CDS |
| TTGTCCCACATAACAAAGAA+CGG | 0.560325 | 5.1:-30433715 | None:intergenic |
| ATATTCACTCTCTACATCAC+AGG | 0.579507 | 5.1:+30433422 | MS.gene77418:CDS |
| TCGTTAAGAAGCCCCTCGAT+GGG | 0.595489 | 5.1:-30433484 | None:intergenic |
| TCATTAGAGAAGAGAGCTAG+TGG | 0.601615 | 5.1:+30433763 | MS.gene77418:CDS |
| ACATGTGGAATAGGTTCCCA+GGG | 0.610107 | 5.1:-30433621 | None:intergenic |
| CAATGTTGGTTATGGACACA+TGG | 0.615144 | 5.1:+30433350 | MS.gene77418:CDS |
| TAAATTGTCTTGCTAAAACA+AGG | 0.626413 | 5.1:-30433321 | None:intergenic |
| CTTTGCCACCATTAAAACCG+TGG | 0.628473 | 5.1:+30433576 | MS.gene77418:CDS |
| GTTACATACAAAGAAAGATG+AGG | 0.653839 | 5.1:+30431903 | MS.gene77418:CDS |
| TAAACCACAGTGATCATCCA+CGG | 0.672027 | 5.1:-30433593 | None:intergenic |
| ACAGTTGATGGTGTACGTCG+TGG | 0.672465 | 5.1:-30433666 | None:intergenic |
| TATACAATCATCCCATCGAG+GGG | 0.693015 | 5.1:+30433473 | MS.gene77418:CDS |
| TCTATACAATCATCCCATCG+AGG | 0.703494 | 5.1:+30433471 | MS.gene77418:CDS |
| TTAGAGAAGAGAGCTAGTGG+CGG | 0.706802 | 5.1:+30433766 | MS.gene77418:CDS |
| CTTCTTAACGACACAATCGG+CGG | 0.737880 | 5.1:+30433496 | MS.gene77418:CDS |
| GGGTGTGTGAGAAATGACGA+TGG | 0.744824 | 5.1:+30431768 | None:intergenic |
| AAAACCGTGGATGATCACTG+TGG | 0.771335 | 5.1:+30433589 | MS.gene77418:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAACATATAACAATTA+AGG | - | chr5.1:30432651-30432670 | None:intergenic | 15.0% |
| !!! | TATCTTTCTAATTTTTGAAA+CGG | - | chr5.1:30432763-30432782 | None:intergenic | 15.0% |
| !! | TAAATCCAATAAACTAAAAG+TGG | - | chr5.1:30431838-30431857 | None:intergenic | 20.0% |
| !! | TTAGTTTATTGGATTTATTC+TGG | + | chr5.1:30431841-30431860 | MS.gene77418:CDS | 20.0% |
| !!! | AATTGTTATTGAAAAACATG+TGG | - | chr5.1:30433639-30433658 | None:intergenic | 20.0% |
| ! | AAAAACTTACTGCAAACAAA+AGG | - | chr5.1:30432008-30432027 | None:intergenic | 25.0% |
| ! | AAAACTTACTGCAAACAAAA+GGG | - | chr5.1:30432007-30432026 | None:intergenic | 25.0% |
| ! | AAACATAGTATTTGCAAAAG+AGG | - | chr5.1:30432377-30432396 | None:intergenic | 25.0% |
| ! | AACATAGTATTTGCAAAAGA+GGG | - | chr5.1:30432376-30432395 | None:intergenic | 25.0% |
| ! | AATTAATGAATCTCTTGAGT+TGG | + | chr5.1:30432510-30432529 | MS.gene77418:intron | 25.0% |
| ! | ACAATTTATTACTGCAATGT+TGG | + | chr5.1:30433336-30433355 | MS.gene77418:CDS | 25.0% |
| ! | AGTAAAATCCATACAAGATT+TGG | - | chr5.1:30432866-30432885 | None:intergenic | 25.0% |
| ! | CTATAACTATAACTAAACTG+TGG | + | chr5.1:30433229-30433248 | MS.gene77418:intron | 25.0% |
| ! | CTTAAAAGTCAACACATAAA+GGG | - | chr5.1:30432287-30432306 | None:intergenic | 25.0% |
| ! | GCTTAATGAATTGATCTATT+TGG | + | chr5.1:30432260-30432279 | MS.gene77418:intron | 25.0% |
| ! | TAAATTGTCTTGCTAAAACA+AGG | - | chr5.1:30433324-30433343 | None:intergenic | 25.0% |
| ! | TATTGAAAAACATGTGGAAT+AGG | - | chr5.1:30433633-30433652 | None:intergenic | 25.0% |
| ! | TCTAAGTTTGATGTTGTTAA+AGG | + | chr5.1:30431943-30431962 | MS.gene77418:CDS | 25.0% |
| !! | AATTAAGTTGCAATTGTATC+TGG | + | chr5.1:30433082-30433101 | MS.gene77418:intron | 25.0% |
| !! | ATCTTGTATGGATTTTACTT+TGG | + | chr5.1:30432867-30432886 | MS.gene77418:intron | 25.0% |
| !!! | GATAAGGTTTTGTTTCTATT+TGG | + | chr5.1:30432475-30432494 | MS.gene77418:intron | 25.0% |
| !!! | GTTTTTTGTTTGTTTGTAGA+GGG | + | chr5.1:30432055-30432074 | MS.gene77418:intron | 25.0% |
| !!! | TCTGGTTTTTATGTTGTTTT+GGG | + | chr5.1:30431859-30431878 | MS.gene77418:CDS | 25.0% |
| !!! | TGTTTTTTGTTTGTTTGTAG+AGG | + | chr5.1:30432054-30432073 | MS.gene77418:intron | 25.0% |
| !!! | TTCTGGTTTTTATGTTGTTT+TGG | + | chr5.1:30431858-30431877 | MS.gene77418:CDS | 25.0% |
| AACTATAACTAAACTGTGGT+TGG | + | chr5.1:30433233-30433252 | MS.gene77418:intron | 30.0% | |
| AATGAAGTTGTGATTGTATC+TGG | + | chr5.1:30433202-30433221 | MS.gene77418:intron | 30.0% | |
| ACTATAACTAAACTGTGGTT+GGG | + | chr5.1:30433234-30433253 | MS.gene77418:intron | 30.0% | |
| AGATGAGGATGAAAAGAATT+TGG | + | chr5.1:30431918-30431937 | MS.gene77418:CDS | 30.0% | |
| ATATAACACAATTGCAGACT+TGG | + | chr5.1:30432712-30432731 | MS.gene77418:intron | 30.0% | |
| CAGAATCTACAACAGTAAAA+AGG | - | chr5.1:30432456-30432475 | None:intergenic | 30.0% | |
| CCTTAAAAGTCAACACATAA+AGG | - | chr5.1:30432288-30432307 | None:intergenic | 30.0% | |
| GAGAGTGAATATGTTTGTAT+AGG | - | chr5.1:30433414-30433433 | None:intergenic | 30.0% | |
| GTTACATACAAAGAAAGATG+AGG | + | chr5.1:30431903-30431922 | MS.gene77418:CDS | 30.0% | |
| TACTAGTAATTCATAAGTCC+TGG | - | chr5.1:30432184-30432203 | None:intergenic | 30.0% | |
| TACTGTTGTAGATTCTGATA+AGG | + | chr5.1:30432459-30432478 | MS.gene77418:intron | 30.0% | |
| TATAACACAATTGCAGACTT+GGG | + | chr5.1:30432713-30432732 | MS.gene77418:intron | 30.0% | |
| TATAGAGCTCCAAATGAATA+GGG | - | chr5.1:30433457-30433476 | None:intergenic | 30.0% | |
| TATCTTAGGCTACATCAAAA+TGG | + | chr5.1:30432580-30432599 | MS.gene77418:intron | 30.0% | |
| TATTCTCATTGGTACTACTT+TGG | - | chr5.1:30433294-30433313 | None:intergenic | 30.0% | |
| TTAGAGTTCAGAGCTAAATA+GGG | + | chr5.1:30432408-30432427 | MS.gene77418:intron | 30.0% | |
| ! | AACCACTATTTTCAATGATC+CGG | + | chr5.1:30433120-30433139 | MS.gene77418:intron | 30.0% |
| ! | AAGTTTCTTTTACGCAAGAA+AGG | + | chr5.1:30432679-30432698 | MS.gene77418:intron | 30.0% |
| ! | GATTGTTTGCTGAAGATTAT+AGG | + | chr5.1:30431881-30431900 | MS.gene77418:CDS | 30.0% |
| ! | TATTACTGCAATGTTGGTTA+TGG | + | chr5.1:30433342-30433361 | MS.gene77418:CDS | 30.0% |
| ! | TGATTTTATATTGCCTAAGC+TGG | + | chr5.1:30432220-30432239 | MS.gene77418:intron | 30.0% |
| ! | TTTAGAGTTCAGAGCTAAAT+AGG | + | chr5.1:30432407-30432426 | MS.gene77418:intron | 30.0% |
| !! | TAGATACTATAGTGGGTTAT+AGG | + | chr5.1:30432621-30432640 | MS.gene77418:intron | 30.0% |
| !!! | CCTTTATGTGTTGACTTTTA+AGG | + | chr5.1:30432285-30432304 | MS.gene77418:intron | 30.0% |
| !!! | TTGCAGTAAGTTTTTTGTGA+TGG | + | chr5.1:30432013-30432032 | MS.gene77418:intron | 30.0% |
| !!! | TTGCTCCACTTTTAGTTTAT+TGG | + | chr5.1:30431830-30431849 | MS.gene77418:CDS | 30.0% |
| !!! | TTGGGTTTTTGTTTTTGTGT+AGG | + | chr5.1:30433252-30433271 | MS.gene77418:intron | 30.0% |
| AAGAAAAAAATGGATGCTCG+AGG | - | chr5.1:30433553-30433572 | None:intergenic | 35.0% | |
| AGACAAGTCAATGTTTGCAA+CGG | - | chr5.1:30432795-30432814 | None:intergenic | 35.0% | |
| ATATTCACTCTCTACATCAC+AGG | + | chr5.1:30433422-30433441 | MS.gene77418:CDS | 35.0% | |
| ATGAAACTCGAACAAATGAG+AGG | + | chr5.1:30432093-30432112 | MS.gene77418:intron | 35.0% | |
| ATGTAGCCTAAGATAAACAC+AGG | - | chr5.1:30432575-30432594 | None:intergenic | 35.0% | |
| CTCATTGTACCCTATTCATT+TGG | + | chr5.1:30433445-30433464 | MS.gene77418:CDS | 35.0% | |
| GCATCTGTAGATACTATAGT+GGG | + | chr5.1:30432614-30432633 | MS.gene77418:intron | 35.0% | |
| GGCAAAGGAGAAGAAAAAAA+TGG | - | chr5.1:30433563-30433582 | None:intergenic | 35.0% | |
| GTATAGAGCTCCAAATGAAT+AGG | - | chr5.1:30433458-30433477 | None:intergenic | 35.0% | |
| GTTATGTGGGACAAAATCTT+AGG | + | chr5.1:30433724-30433743 | MS.gene77418:CDS | 35.0% | |
| TAGACCTTGTAAACCTTACA+AGG | + | chr5.1:30433798-30433817 | MS.gene77418:CDS | 35.0% | |
| TCATCCTTGTAAGGTTTACA+AGG | - | chr5.1:30433805-30433824 | None:intergenic | 35.0% | |
| TGCATCTGTAGATACTATAG+TGG | + | chr5.1:30432613-30432632 | MS.gene77418:intron | 35.0% | |
| TTCGGGACACAACATATATT+CGG | + | chr5.1:30432129-30432148 | MS.gene77418:intron | 35.0% | |
| TTGTCCCACATAACAAAGAA+CGG | - | chr5.1:30433718-30433737 | None:intergenic | 35.0% | |
| TTGTTTGTTTGTAGAGGGAT+TGG | + | chr5.1:30432060-30432079 | MS.gene77418:intron | 35.0% | |
| TTTGAGCCTGTGTTTATCTT+AGG | + | chr5.1:30432566-30432585 | MS.gene77418:intron | 35.0% | |
| ! | ACCACTATTTTCAATGATCC+GGG | + | chr5.1:30433121-30433140 | MS.gene77418:intron | 35.0% |
| ! | ATATTGCCTAAGCTGGTTTA+TGG | + | chr5.1:30432227-30432246 | MS.gene77418:intron | 35.0% |
| ! | ATGACGATGGATTTGGATTT+GGG | + | chr5.1:30431781-30431800 | MS.gene77418:CDS | 35.0% |
| ! | GCTTTATCTTTTCTCCTATC+TGG | + | chr5.1:30433520-30433539 | MS.gene77418:CDS | 35.0% |
| ! | TCATTTGTTCGAGTTTCATG+TGG | - | chr5.1:30432092-30432111 | None:intergenic | 35.0% |
| !! | AAGGAGAGAAGTATTCTCAT+TGG | - | chr5.1:30433305-30433324 | None:intergenic | 35.0% |
| !! | TTTTCGAGCCAAATCTTGTA+TGG | + | chr5.1:30432855-30432874 | MS.gene77418:intron | 35.0% |
| !!! | TTTGTTTTTGTGTAGGTGAC+AGG | + | chr5.1:30433259-30433278 | MS.gene77418:intron | 35.0% |
| AAACCTCCATAAACCAGCTT+AGG | - | chr5.1:30432236-30432255 | None:intergenic | 40.0% | |
| ACCCGGATCATTGAAAATAG+TGG | - | chr5.1:30433125-30433144 | None:intergenic | 40.0% | |
| ACTTGTCTCGATCAGTTTAG+AGG | + | chr5.1:30432807-30432826 | MS.gene77418:intron | 40.0% | |
| CTATACAATCATCCCATCGA+GGG | + | chr5.1:30433472-30433491 | MS.gene77418:CDS | 40.0% | |
| CTCTAATGAGTATGGCATGT+AGG | - | chr5.1:30433752-30433771 | None:intergenic | 40.0% | |
| GCTCTCTTCTCTAATGAGTA+TGG | - | chr5.1:30433760-30433779 | None:intergenic | 40.0% | |
| GGGTTTCTGATGAGATGTTA+GGG | + | chr5.1:30431803-30431822 | MS.gene77418:CDS | 40.0% | |
| TAAACCACAGTGATCATCCA+CGG | - | chr5.1:30433596-30433615 | None:intergenic | 40.0% | |
| TATACAATCATCCCATCGAG+GGG | + | chr5.1:30433473-30433492 | MS.gene77418:CDS | 40.0% | |
| TCATTAGAGAAGAGAGCTAG+TGG | + | chr5.1:30433763-30433782 | MS.gene77418:CDS | 40.0% | |
| TCTATACAATCATCCCATCG+AGG | + | chr5.1:30433471-30433490 | MS.gene77418:CDS | 40.0% | |
| TGGATGATCACTGTGGTTTA+TGG | + | chr5.1:30433596-30433615 | MS.gene77418:CDS | 40.0% | |
| TTGATACTGCATTGTCAACC+CGG | - | chr5.1:30433142-30433161 | None:intergenic | 40.0% | |
| ! | ACTTGTTGCCATACAGTTGA+TGG | - | chr5.1:30433681-30433700 | None:intergenic | 40.0% |
| ! | CAATGTTGGTTATGGACACA+TGG | + | chr5.1:30433350-30433369 | MS.gene77418:CDS | 40.0% |
| ! | GCAACCGTTCTTTGTTATGT+GGG | + | chr5.1:30433711-30433730 | MS.gene77418:CDS | 40.0% |
| ! | GCTCTGAACTCTAAACAACT+AGG | - | chr5.1:30432402-30432421 | None:intergenic | 40.0% |
| ! | TCACGAGTGTTGTCAAATAG+CGG | + | chr5.1:30432906-30432925 | MS.gene77418:intron | 40.0% |
| ! | TGACGATGGATTTGGATTTG+GGG | + | chr5.1:30431782-30431801 | MS.gene77418:CDS | 40.0% |
| !! | ATCATCCACGGTTTTAATGG+TGG | - | chr5.1:30433584-30433603 | None:intergenic | 40.0% |
| !! | GTGATCATCCACGGTTTTAA+TGG | - | chr5.1:30433587-30433606 | None:intergenic | 40.0% |
| AAAACCGTGGATGATCACTG+TGG | + | chr5.1:30433589-30433608 | MS.gene77418:CDS | 45.0% | |
| AACATGTGGAATAGGTTCCC+AGG | - | chr5.1:30433625-30433644 | None:intergenic | 45.0% | |
| ACATGTGGAATAGGTTCCCA+GGG | - | chr5.1:30433624-30433643 | None:intergenic | 45.0% | |
| CTTCTTAACGACACAATCGG+CGG | + | chr5.1:30433496-30433515 | MS.gene77418:CDS | 45.0% | |
| CTTTGCCACCATTAAAACCG+TGG | + | chr5.1:30433576-30433595 | MS.gene77418:CDS | 45.0% | |
| GACGTACACCATCAACTGTA+TGG | + | chr5.1:30433670-30433689 | MS.gene77418:CDS | 45.0% | |
| GGGCTTCTTAACGACACAAT+CGG | + | chr5.1:30433493-30433512 | MS.gene77418:CDS | 45.0% | |
| GGGGTTTCTGATGAGATGTT+AGG | + | chr5.1:30431802-30431821 | MS.gene77418:CDS | 45.0% | |
| TTAGAGAAGAGAGCTAGTGG+CGG | + | chr5.1:30433766-30433785 | MS.gene77418:CDS | 45.0% | |
| TTCATAAGTCCTGGCTCAAC+TGG | - | chr5.1:30432175-30432194 | None:intergenic | 45.0% | |
| ! | ATTGCAGACTTGGGTTCTAG+TGG | + | chr5.1:30432722-30432741 | MS.gene77418:intron | 45.0% |
| ! | CGCAACCGTTCTTTGTTATG+TGG | + | chr5.1:30433710-30433729 | MS.gene77418:CDS | 45.0% |
| ! | GACGATGGATTTGGATTTGG+GGG | + | chr5.1:30431783-30431802 | MS.gene77418:CDS | 45.0% |
| ! | TTGCCTAAGCTGGTTTATGG+AGG | + | chr5.1:30432230-30432249 | MS.gene77418:intron | 45.0% |
| !! | CACGGTTTTAATGGTGGCAA+AGG | - | chr5.1:30433578-30433597 | None:intergenic | 45.0% |
| ACTGTGGTTTATGGCTCCCT+GGG | + | chr5.1:30433605-30433624 | MS.gene77418:CDS | 50.0% | |
| AGAGGTCCTGGCTTCGAATT+CGG | + | chr5.1:30432111-30432130 | MS.gene77418:intron | 50.0% | |
| CTCGAACAAATGAGAGGTCC+TGG | + | chr5.1:30432099-30432118 | MS.gene77418:intron | 50.0% | |
| CTCGAGGACTCATACCAGAT+AGG | - | chr5.1:30433537-30433556 | None:intergenic | 50.0% | |
| TAGCATTTGCCAGTTGAGCC+AGG | + | chr5.1:30432163-30432182 | MS.gene77418:intron | 50.0% | |
| TCGTTAAGAAGCCCCTCGAT+GGG | - | chr5.1:30433487-30433506 | None:intergenic | 50.0% | |
| !! | ACAGTTGATGGTGTACGTCG+TGG | - | chr5.1:30433669-30433688 | None:intergenic | 50.0% |
| CACTGTGGTTTATGGCTCCC+TGG | + | chr5.1:30433604-30433623 | MS.gene77418:CDS | 55.0% | |
| GAGGTCCTGGCTTCGAATTC+GGG | + | chr5.1:30432112-30432131 | MS.gene77418:intron | 55.0% | |
| GTCGTTAAGAAGCCCCTCGA+TGG | - | chr5.1:30433488-30433507 | None:intergenic | 55.0% | |
| TGTGTCCCGAATTCGAAGCC+AGG | - | chr5.1:30432120-30432139 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 30431781 | 30433828 | 30431781 | ID=MS.gene77418 |
| chr5.1 | mRNA | 30431781 | 30433828 | 30431781 | ID=MS.gene77418.t1;Parent=MS.gene77418 |
| chr5.1 | exon | 30431781 | 30432017 | 30431781 | ID=MS.gene77418.t1.exon1;Parent=MS.gene77418.t1 |
| chr5.1 | CDS | 30431781 | 30432017 | 30431781 | ID=cds.MS.gene77418.t1;Parent=MS.gene77418.t1 |
| chr5.1 | exon | 30433274 | 30433828 | 30433274 | ID=MS.gene77418.t1.exon2;Parent=MS.gene77418.t1 |
| chr5.1 | CDS | 30433274 | 30433828 | 30433274 | ID=cds.MS.gene77418.t1;Parent=MS.gene77418.t1 |
| Gene Sequence |
| Protein sequence |
