Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070599.t1 | XP_013467694.1 | 100 | 189 | 0 | 0 | 1 | 189 | 33 | 221 | 7.70E-99 | 369.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070599.t1 | O65731 | 93.8 | 178 | 10 | 1 | 13 | 189 | 2 | 179 | 1.2e-87 | 323.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070599.t1 | A0A072VJE7 | 100.0 | 189 | 0 | 0 | 1 | 189 | 33 | 221 | 5.5e-99 | 369.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene070599 | 0.824332 | 8.55E-54 | -1.69E-46 |
| MS.gene050916 | MS.gene070599 | 0.834064 | 3.72E-56 | -1.69E-46 |
| MS.gene051330 | MS.gene070599 | 0.840397 | 8.91E-58 | -1.69E-46 |
| MS.gene051746 | MS.gene070599 | 0.867233 | 1.59E-65 | -1.69E-46 |
| MS.gene051748 | MS.gene070599 | 0.851181 | 1.05E-60 | -1.69E-46 |
| MS.gene051850 | MS.gene070599 | 0.823722 | 1.19E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene070599 | 0.857668 | 1.40E-62 | -1.69E-46 |
| MS.gene052947 | MS.gene070599 | 0.869709 | 2.53E-66 | -1.69E-46 |
| MS.gene053109 | MS.gene070599 | 0.820142 | 8.02E-53 | -1.69E-46 |
| MS.gene054937 | MS.gene070599 | 0.845316 | 4.38E-59 | -1.69E-46 |
| MS.gene055424 | MS.gene070599 | 0.816335 | 5.83E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene070599 | 0.834365 | 3.13E-56 | -1.69E-46 |
| MS.gene056075 | MS.gene070599 | 0.824418 | 8.16E-54 | -1.69E-46 |
| MS.gene056091 | MS.gene070599 | 0.815229 | 1.03E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene070599 | 0.806556 | 7.77E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene070599 | 0.84803 | 7.95E-60 | -1.69E-46 |
| MS.gene057094 | MS.gene070599 | 0.855727 | 5.20E-62 | -1.69E-46 |
| MS.gene06001 | MS.gene070599 | 0.891135 | 5.23E-74 | -1.69E-46 |
| MS.gene06011 | MS.gene070599 | 0.801121 | 1.05E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene070599 | 0.820115 | 8.13E-53 | -1.69E-46 |
| MS.gene060830 | MS.gene070599 | 0.807459 | 5.00E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCAACAATGACCTGAAT+TGG | 0.291343 | 1.1:-42220602 | None:intergenic |
| CAGATTACTGATTTGTCTCT+TGG | 0.294356 | 1.1:+42220365 | MS.gene070599:intron |
| GATACTCGAAGAAGCGATTC+AGG | 0.345165 | 1.1:+42220444 | MS.gene070599:CDS |
| AGCTTGACTTCGATCAGGTT+TGG | 0.359219 | 1.1:-42219859 | None:intergenic |
| CTGGAGCTTCGATGACGTTC+AGG | 0.377509 | 1.1:+42219891 | MS.gene070599:CDS |
| CAATGACCTGAATTGGGTTC+TGG | 0.383650 | 1.1:-42220595 | None:intergenic |
| TGGAACATATGTTGCATGTT+TGG | 0.388336 | 1.1:-42220408 | None:intergenic |
| AGATTACTGATTTGTCTCTT+GGG | 0.391228 | 1.1:+42220366 | MS.gene070599:intron |
| GGATCTGAAACGACTGCAAC+AGG | 0.391313 | 1.1:-42219838 | None:intergenic |
| AACCGACCAGAACCCAATTC+AGG | 0.402601 | 1.1:+42220589 | MS.gene070599:CDS |
| GAAAGAAGCTTATGGCTGTT+AGG | 0.402629 | 1.1:+42220531 | MS.gene070599:CDS |
| TTGTTGATGCTGTCGTCAAC+AGG | 0.441734 | 1.1:+42220615 | MS.gene070599:CDS |
| GCCATCTATCTTCTAACTAC+TGG | 0.451088 | 1.1:+42222494 | MS.gene070599:CDS |
| GAACTTATTAATGCAGCAAA+AGG | 0.453667 | 1.1:+42222572 | MS.gene070599:CDS |
| GAACAATGGAAAGAAGCTTA+TGG | 0.462961 | 1.1:+42220523 | MS.gene070599:CDS |
| AATTGTCTTAATATTTCTAA+AGG | 0.465228 | 1.1:-42222531 | None:intergenic |
| CGTGAAGATGCTACTCGTAT+TGG | 0.468388 | 1.1:+42222410 | MS.gene070599:CDS |
| TGAAGAGCTTGACTTCGATC+AGG | 0.472581 | 1.1:-42219864 | None:intergenic |
| CAGCAAAAGGATCATCCAAC+AGG | 0.484289 | 1.1:+42222585 | MS.gene070599:CDS |
| GCTACTCGTATTGGTTCTGC+TGG | 0.495376 | 1.1:+42222419 | MS.gene070599:CDS |
| GATTACTGATTTGTCTCTTG+GGG | 0.496398 | 1.1:+42220367 | MS.gene070599:intron |
| AAGTCAAGCTCTTCAACCGC+TGG | 0.503610 | 1.1:+42219872 | MS.gene070599:CDS |
| CATCAACAATGACCTGAATT+GGG | 0.506610 | 1.1:-42220601 | None:intergenic |
| ACCAGTAGTTAGAAGATAGA+TGG | 0.507365 | 1.1:-42222495 | None:intergenic |
| TTGTCTCTTGGGGATTACAT+TGG | 0.513322 | 1.1:+42220377 | MS.gene070599:CDS |
| GGCTTGATTCACACGACGAA+GGG | 0.519901 | 1.1:-42222474 | None:intergenic |
| TGCTGGAGTTGTAAGAAGAC+AGG | 0.532743 | 1.1:+42222436 | MS.gene070599:CDS |
| ACATATGTTCCACACACTGC+TGG | 0.537649 | 1.1:+42220419 | MS.gene070599:CDS |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 1.1:-42220479 | None:intergenic |
| TAGGATCATCAAGCATGCTA+TGG | 0.558540 | 1.1:+42220550 | MS.gene070599:CDS |
| CTAACTCTCTCATGATGCAT+GGG | 0.561374 | 1.1:+42220498 | MS.gene070599:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 1.1:-42220480 | None:intergenic |
| ACTAACTCTCTCATGATGCA+TGG | 0.563337 | 1.1:+42220497 | MS.gene070599:CDS |
| ATGATGCATGGGAGGAACAA+TGG | 0.566550 | 1.1:+42220509 | MS.gene070599:CDS |
| AGTTGTAAGAAGACAGGCTG+TGG | 0.574582 | 1.1:+42222442 | MS.gene070599:CDS |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 1.1:+42220471 | MS.gene070599:CDS |
| TTCTTCAATGACATCAGCCA+TGG | 0.596830 | 1.1:-42219815 | None:intergenic |
| GACCTGAATTGGGTTCTGGT+CGG | 0.606242 | 1.1:-42220591 | None:intergenic |
| GAGTATCTACCAGCAGTGTG+TGG | 0.639793 | 1.1:-42220428 | None:intergenic |
| ACTCTCTCATGATGCATGGG+AGG | 0.648954 | 1.1:+42220501 | MS.gene070599:CDS |
| GAACGTCATCGAAGCTCCAG+CGG | 0.655762 | 1.1:-42219888 | None:intergenic |
| TGGCTTGATTCACACGACGA+AGG | 0.656812 | 1.1:-42222475 | None:intergenic |
| GCTTGATTCACACGACGAAG+GGG | 0.665666 | 1.1:-42222473 | None:intergenic |
| ATACGAGTAGCATCTTCACG+AGG | 0.785565 | 1.1:-42222407 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAAATTCTATTTATTA+AGG | - | chr1.1:42222114-42222133 | None:intergenic | 10.0% |
| !! | AATTTAAACAAAAAATTAAC+TGG | - | chr1.1:42220848-42220867 | None:intergenic | 10.0% |
| !! | TTAGAAATTAATAAGAAATA+TGG | + | chr1.1:42221548-42221567 | MS.gene070599:intron | 10.0% |
| !!! | TTCTTTTTTTAAATTTTTTC+TGG | + | chr1.1:42221093-42221112 | MS.gene070599:intron | 10.0% |
| !! | ATATTAAAAAAACAATAAGC+TGG | - | chr1.1:42221220-42221239 | None:intergenic | 15.0% |
| !! | TAAATTCTAATTTGACATAT+TGG | + | chr1.1:42220862-42220881 | MS.gene070599:intron | 15.0% |
| !!! | AATTGTCTTAATATTTCTAA+AGG | - | chr1.1:42222534-42222553 | None:intergenic | 15.0% |
| !!! | TAATATTTCTATGTTTTTGA+TGG | + | chr1.1:42220999-42221018 | MS.gene070599:intron | 15.0% |
| !!! | TTTTAATTAGTTTCATGTTT+AGG | + | chr1.1:42219943-42219962 | MS.gene070599:intron | 15.0% |
| !! | AAAAAATTAACTGGAATGTT+AGG | - | chr1.1:42220839-42220858 | None:intergenic | 20.0% |
| !! | AAAAATGTAGTGATTAATGT+TGG | + | chr1.1:42220322-42220341 | MS.gene070599:intron | 20.0% |
| !! | AAAAGGTAGTAGTATATTAA+TGG | - | chr1.1:42222333-42222352 | None:intergenic | 20.0% |
| !! | AATTGAAAATAAAAATGAGC+TGG | - | chr1.1:42221848-42221867 | None:intergenic | 20.0% |
| !! | ATTGAAAATAAAAATGAGCT+GGG | - | chr1.1:42221847-42221866 | None:intergenic | 20.0% |
| !! | GTATTTGAAAGGAAAAAAAT+TGG | - | chr1.1:42221692-42221711 | None:intergenic | 20.0% |
| !! | GTTATCATAAATAAACACTT+TGG | + | chr1.1:42220973-42220992 | MS.gene070599:intron | 20.0% |
| !!! | AAATTTTTTCTGGTTTGATA+TGG | + | chr1.1:42221103-42221122 | MS.gene070599:intron | 20.0% |
| !!! | ATGAATAATTTGTTTCCTAT+TGG | + | chr1.1:42221766-42221785 | MS.gene070599:intron | 20.0% |
| !!! | ATGAATATTTGTTTTCCTAT+TGG | + | chr1.1:42221432-42221451 | MS.gene070599:intron | 20.0% |
| !!! | TTTGTTGAAATTTTTGTAGT+TGG | + | chr1.1:42220032-42220051 | MS.gene070599:intron | 20.0% |
| !!! | TTTTATTTTCTGGTTTGATA+TGG | + | chr1.1:42220731-42220750 | MS.gene070599:intron | 20.0% |
| !!! | TTTTGTTATTCCAGATTATT+TGG | + | chr1.1:42220159-42220178 | MS.gene070599:intron | 20.0% |
| ! | AAAAAAAGAACAACCTAATC+AGG | - | chr1.1:42221083-42221102 | None:intergenic | 25.0% |
| ! | ATCAGATCCAAATTCAAAAA+AGG | - | chr1.1:42222350-42222369 | None:intergenic | 25.0% |
| ! | ATGAATATTTGTTTCCCTAT+TGG | + | chr1.1:42221137-42221156 | MS.gene070599:intron | 25.0% |
| ! | ATTTGTGTATTACTTGTGAT+TGG | + | chr1.1:42222172-42222191 | MS.gene070599:intron | 25.0% |
| ! | CATTACTAACGAAACATAAA+GGG | - | chr1.1:42220904-42220923 | None:intergenic | 25.0% |
| ! | CTTTACTAATGAAACATATG+AGG | - | chr1.1:42221288-42221307 | None:intergenic | 25.0% |
| ! | TAAAACAAATTGCATCATTC+TGG | - | chr1.1:42221171-42221190 | None:intergenic | 25.0% |
| ! | TAATTATTGTGATCCTGATT+AGG | + | chr1.1:42221067-42221086 | MS.gene070599:intron | 25.0% |
| ! | TCATTACTAACGAAACATAA+AGG | - | chr1.1:42220905-42220924 | None:intergenic | 25.0% |
| ! | TCTCTTATAAGTAACACAAA+AGG | - | chr1.1:42221599-42221618 | None:intergenic | 25.0% |
| ! | TTCATGAGTTATGATTATCT+TGG | + | chr1.1:42221938-42221957 | MS.gene070599:intron | 25.0% |
| ! | TTCATTAGTAAAGACTGTTA+AGG | + | chr1.1:42221295-42221314 | MS.gene070599:intron | 25.0% |
| !!! | ACTACTACCTTTTTTGAATT+TGG | + | chr1.1:42222340-42222359 | MS.gene070599:intron | 25.0% |
| !!! | ATGAATTTTTGTTTCCCTAT+TGG | + | chr1.1:42220765-42220784 | MS.gene070599:intron | 25.0% |
| AATACAAATTGCCATCATTC+TGG | - | chr1.1:42221466-42221485 | None:intergenic | 30.0% | |
| AATGGCATATTTAAGCAACA+AGG | - | chr1.1:42222204-42222223 | None:intergenic | 30.0% | |
| ACAAGAAACACCAAATAATC+TGG | - | chr1.1:42220172-42220191 | None:intergenic | 30.0% | |
| ATATTAACCCTTTAGACGAT+GGG | - | chr1.1:42222252-42222271 | None:intergenic | 30.0% | |
| ATGATTCACACGTATTTGAA+AGG | - | chr1.1:42221703-42221722 | None:intergenic | 30.0% | |
| GAAACTGCGATAATAAGAAT+CGG | + | chr1.1:42222003-42222022 | MS.gene070599:intron | 30.0% | |
| GAACTTATTAATGCAGCAAA+AGG | + | chr1.1:42222572-42222591 | MS.gene070599:CDS | 30.0% | |
| GTTAATATGGACTTGCAATT+AGG | + | chr1.1:42222264-42222283 | MS.gene070599:intron | 30.0% | |
| TAGTGTTATGATTTACTTGC+TGG | + | chr1.1:42221722-42221741 | MS.gene070599:intron | 30.0% | |
| TTATTTACCCATCGTCTAAA+GGG | + | chr1.1:42222242-42222261 | MS.gene070599:intron | 30.0% | |
| TTCGTTAGTAATGATTGTTG+AGG | + | chr1.1:42220911-42220930 | MS.gene070599:intron | 30.0% | |
| ! | ATGATTGGTTATTTCCCTAT+TGG | + | chr1.1:42222037-42222056 | MS.gene070599:intron | 30.0% |
| ! | TATGAATCGTTGATTGTTGA+TGG | + | chr1.1:42220638-42220657 | MS.gene070599:intron | 30.0% |
| !! | AGATTACTGATTTGTCTCTT+GGG | + | chr1.1:42220366-42220385 | MS.gene070599:intron | 30.0% |
| !!! | TATTTTCTGGTTTGATATGG+AGG | + | chr1.1:42220734-42220753 | MS.gene070599:intron | 30.0% |
| AAAAAATGGCCTAGAATGTC+AGG | - | chr1.1:42221508-42221527 | None:intergenic | 35.0% | |
| AAGCTGGAATGATATGAGAA+TGG | - | chr1.1:42221204-42221223 | None:intergenic | 35.0% | |
| AATGAGCTGGGAAATAAGAA+TGG | - | chr1.1:42221835-42221854 | None:intergenic | 35.0% | |
| ACCAGTAGTTAGAAGATAGA+TGG | - | chr1.1:42222498-42222517 | None:intergenic | 35.0% | |
| ATACATAAGTGCCATCATCA+AGG | - | chr1.1:42222071-42222090 | None:intergenic | 35.0% | |
| ATCAAGGCAATCAAACCAAT+AGG | - | chr1.1:42222055-42222074 | None:intergenic | 35.0% | |
| ATGCCATTGTTTACTTTCTG+TGG | + | chr1.1:42222216-42222235 | MS.gene070599:intron | 35.0% | |
| CAACCACAGAAAGTAAACAA+TGG | - | chr1.1:42222222-42222241 | None:intergenic | 35.0% | |
| CAAGTAATACACAAATGACG+AGG | - | chr1.1:42222168-42222187 | None:intergenic | 35.0% | |
| CATATTAACCCTTTAGACGA+TGG | - | chr1.1:42222253-42222272 | None:intergenic | 35.0% | |
| CATCAACAATGACCTGAATT+GGG | - | chr1.1:42220604-42220623 | None:intergenic | 35.0% | |
| CATCGTCTAAAGGGTTAATA+TGG | + | chr1.1:42222251-42222270 | MS.gene070599:intron | 35.0% | |
| GAACAATGGAAAGAAGCTTA+TGG | + | chr1.1:42220523-42220542 | MS.gene070599:CDS | 35.0% | |
| GTTATTTACCCATCGTCTAA+AGG | + | chr1.1:42222241-42222260 | MS.gene070599:intron | 35.0% | |
| TAACTGGAATGTTAGGAGAA+TGG | - | chr1.1:42220832-42220851 | None:intergenic | 35.0% | |
| TCAAGGCAATCAAACCAATA+GGG | - | chr1.1:42222054-42222073 | None:intergenic | 35.0% | |
| TGGAACATATGTTGCATGTT+TGG | - | chr1.1:42220411-42220430 | None:intergenic | 35.0% | |
| TGTTTGTGTATTTGTCGTGA+TGG | + | chr1.1:42221388-42221407 | MS.gene070599:intron | 35.0% | |
| !! | CAGATTACTGATTTGTCTCT+TGG | + | chr1.1:42220365-42220384 | MS.gene070599:intron | 35.0% |
| !! | GATTACTGATTTGTCTCTTG+GGG | + | chr1.1:42220367-42220386 | MS.gene070599:intron | 35.0% |
| !! | TCTATGTTTTTGATGGCTGT+AGG | + | chr1.1:42221006-42221025 | MS.gene070599:intron | 35.0% |
| !! | TTCTGGTTTGATATGGTGAA+TGG | + | chr1.1:42221110-42221129 | MS.gene070599:intron | 35.0% |
| AATACAAGCTGCCATCATTC+TGG | - | chr1.1:42221800-42221819 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+TGG | + | chr1.1:42220497-42220516 | MS.gene070599:CDS | 40.0% | |
| ACTCTTGCAGTCAAACCAAT+AGG | - | chr1.1:42220783-42220802 | None:intergenic | 40.0% | |
| ATTCTGGCAGTCAAACCAAT+AGG | - | chr1.1:42221155-42221174 | None:intergenic | 40.0% | |
| CATACACAAGACAGATCTCA+CGG | - | chr1.1:42221047-42221066 | None:intergenic | 40.0% | |
| CTAACTCTCTCATGATGCAT+GGG | + | chr1.1:42220498-42220517 | MS.gene070599:CDS | 40.0% | |
| CTCTTGCAGTCAAACCAATA+GGG | - | chr1.1:42220782-42220801 | None:intergenic | 40.0% | |
| GAAAGAAGCTTATGGCTGTT+AGG | + | chr1.1:42220531-42220550 | MS.gene070599:CDS | 40.0% | |
| GCATCAACAATGACCTGAAT+TGG | - | chr1.1:42220605-42220624 | None:intergenic | 40.0% | |
| GCCATCTATCTTCTAACTAC+TGG | + | chr1.1:42222494-42222513 | MS.gene070599:CDS | 40.0% | |
| TAGGATCATCAAGCATGCTA+TGG | + | chr1.1:42220550-42220569 | MS.gene070599:CDS | 40.0% | |
| TCGGAGAATGACATGATGAT+TGG | + | chr1.1:42222022-42222041 | MS.gene070599:intron | 40.0% | |
| TGATGGCTTAGAATGGAGAA+TGG | + | chr1.1:42221405-42221424 | MS.gene070599:intron | 40.0% | |
| TGGTTTGATTGCCTTGATGA+TGG | + | chr1.1:42222057-42222076 | MS.gene070599:intron | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | chr1.1:42220482-42220501 | None:intergenic | 40.0% | |
| TTCTGGCAGTCAAACCAATA+GGG | - | chr1.1:42221154-42221173 | None:intergenic | 40.0% | |
| TTCTTCAATGACATCAGCCA+TGG | - | chr1.1:42219818-42219837 | None:intergenic | 40.0% | |
| TTGTCTCTTGGGGATTACAT+TGG | + | chr1.1:42220377-42220396 | MS.gene070599:CDS | 40.0% | |
| TTTGTCGTGATGGCTTAGAA+TGG | + | chr1.1:42221398-42221417 | MS.gene070599:intron | 40.0% | |
| !! | TACTTGCTGGCTTGATTTGA+AGG | + | chr1.1:42221735-42221754 | MS.gene070599:intron | 40.0% |
| !! | TTCTGGTTTGATATGGAGGA+TGG | + | chr1.1:42220738-42220757 | MS.gene070599:intron | 40.0% |
| ACATATGTTCCACACACTGC+TGG | + | chr1.1:42220419-42220438 | MS.gene070599:CDS | 45.0% | |
| AGCTTGACTTCGATCAGGTT+TGG | - | chr1.1:42219862-42219881 | None:intergenic | 45.0% | |
| AGTTGTAAGAAGACAGGCTG+TGG | + | chr1.1:42222442-42222461 | MS.gene070599:CDS | 45.0% | |
| ATACGAGTAGCATCTTCACG+AGG | - | chr1.1:42222410-42222429 | None:intergenic | 45.0% | |
| ATGATGCATGGGAGGAACAA+TGG | + | chr1.1:42220509-42220528 | MS.gene070599:CDS | 45.0% | |
| ATTCTGGCGGTCAAACCAAT+AGG | - | chr1.1:42221784-42221803 | None:intergenic | 45.0% | |
| CAATGACCTGAATTGGGTTC+TGG | - | chr1.1:42220598-42220617 | None:intergenic | 45.0% | |
| CACTTGTGTCCTTTGTACAG+TGG | + | chr1.1:42222383-42222402 | MS.gene070599:intron | 45.0% | |
| CGTGAAGATGCTACTCGTAT+TGG | + | chr1.1:42222410-42222429 | MS.gene070599:CDS | 45.0% | |
| GACCATTCTCCTGACATTCT+AGG | + | chr1.1:42221496-42221515 | MS.gene070599:intron | 45.0% | |
| GATACTCGAAGAAGCGATTC+AGG | + | chr1.1:42220444-42220463 | MS.gene070599:CDS | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | chr1.1:42220483-42220502 | None:intergenic | 45.0% | |
| TGAAGAGCTTGACTTCGATC+AGG | - | chr1.1:42219867-42219886 | None:intergenic | 45.0% | |
| TGCTGGAGTTGTAAGAAGAC+AGG | + | chr1.1:42222436-42222455 | MS.gene070599:CDS | 45.0% | |
| TGGTTTGACTGCCAGAATGA+TGG | + | chr1.1:42221157-42221176 | MS.gene070599:intron | 45.0% | |
| TTGTTGATGCTGTCGTCAAC+AGG | + | chr1.1:42220615-42220634 | MS.gene070599:CDS | 45.0% | |
| !! | TGCTGGCTTGATTTGAAGGA+TGG | + | chr1.1:42221739-42221758 | MS.gene070599:intron | 45.0% |
| !! | AAAAAATTATTTCAATTAAT+TGG | + | chr1.1:42220274-42220293 | MS.gene070599:intron | 5.0% |
| !!! | TTTTATTAGATATAAAAAAA+TGG | - | chr1.1:42221522-42221541 | None:intergenic | 5.0% |
| !!! | TTTTATTTTATTTTATTTTC+TGG | + | chr1.1:42220721-42220740 | MS.gene070599:intron | 5.0% |
| AACCGACCAGAACCCAATTC+AGG | + | chr1.1:42220589-42220608 | MS.gene070599:CDS | 50.0% | |
| AAGTCAAGCTCTTCAACCGC+TGG | + | chr1.1:42219872-42219891 | MS.gene070599:CDS | 50.0% | |
| ACAAGCTGCCATCATTCTGG+CGG | - | chr1.1:42221797-42221816 | None:intergenic | 50.0% | |
| ACTCTCTCATGATGCATGGG+AGG | + | chr1.1:42220501-42220520 | MS.gene070599:CDS | 50.0% | |
| CTCAGTGTCCCATTGTTGAG+AGG | + | chr1.1:42220471-42220490 | MS.gene070599:CDS | 50.0% | |
| GAGTATCTACCAGCAGTGTG+TGG | - | chr1.1:42220431-42220450 | None:intergenic | 50.0% | |
| GCTTGATTCACACGACGAAG+GGG | - | chr1.1:42222476-42222495 | None:intergenic | 50.0% | |
| GGCCTAGAATGTCAGGAGAA+TGG | - | chr1.1:42221501-42221520 | None:intergenic | 50.0% | |
| GGCTTGATTCACACGACGAA+GGG | - | chr1.1:42222477-42222496 | None:intergenic | 50.0% | |
| TCACGAGGACCACTGTACAA+AGG | - | chr1.1:42222395-42222414 | None:intergenic | 50.0% | |
| TGGCTTGATTCACACGACGA+AGG | - | chr1.1:42222478-42222497 | None:intergenic | 50.0% | |
| TGGTTTGACCGCCAGAATGA+TGG | + | chr1.1:42221786-42221805 | MS.gene070599:intron | 50.0% | |
| ! | GACCTGAATTGGGTTCTGGT+CGG | - | chr1.1:42220594-42220613 | None:intergenic | 50.0% |
| ! | GGATCTGAAACGACTGCAAC+AGG | - | chr1.1:42219841-42219860 | None:intergenic | 50.0% |
| !! | GCTACTCGTATTGGTTCTGC+TGG | + | chr1.1:42222419-42222438 | MS.gene070599:CDS | 50.0% |
| CTGGAGCTTCGATGACGTTC+AGG | + | chr1.1:42219891-42219910 | MS.gene070599:CDS | 55.0% | |
| GAACGTCATCGAAGCTCCAG+CGG | - | chr1.1:42219891-42219910 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 42219815 | 42222606 | 42219815 | ID=MS.gene070599 |
| chr1.1 | mRNA | 42219815 | 42222606 | 42219815 | ID=MS.gene070599.t1;Parent=MS.gene070599 |
| chr1.1 | exon | 42219815 | 42219912 | 42219815 | ID=MS.gene070599.t1.exon1;Parent=MS.gene070599.t1 |
| chr1.1 | CDS | 42219815 | 42219912 | 42219815 | ID=cds.MS.gene070599.t1;Parent=MS.gene070599.t1 |
| chr1.1 | exon | 42220368 | 42220636 | 42220368 | ID=MS.gene070599.t1.exon2;Parent=MS.gene070599.t1 |
| chr1.1 | CDS | 42220368 | 42220636 | 42220368 | ID=cds.MS.gene070599.t1;Parent=MS.gene070599.t1 |
| chr1.1 | exon | 42222403 | 42222606 | 42222403 | ID=MS.gene070599.t1.exon3;Parent=MS.gene070599.t1 |
| chr1.1 | CDS | 42222403 | 42222606 | 42222403 | ID=cds.MS.gene070599.t1;Parent=MS.gene070599.t1 |
| Gene Sequence |
| Protein sequence |
