Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072637.t1 | XP_003626077.1 | 97.1 | 277 | 7 | 1 | 1 | 276 | 1 | 277 | 8.70E-160 | 572.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072637.t1 | Q5NB11 | 70.7 | 242 | 71 | 0 | 35 | 276 | 49 | 290 | 6.0e-109 | 395.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072637.t1 | G7KUN3 | 97.1 | 277 | 7 | 1 | 1 | 276 | 1 | 277 | 6.3e-160 | 572.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene072637 | -0.802329 | 5.91E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene072637 | -0.810058 | 1.39E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene072637 | -0.816695 | 4.84E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene072637 | -0.823755 | 1.17E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene072637 | -0.814575 | 1.44E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene072637 | -0.817159 | 3.81E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene072637 | -0.814238 | 1.71E-51 | -1.69E-46 |
| MS.gene050832 | MS.gene072637 | 0.962576 | 4.84E-121 | -1.69E-46 |
| MS.gene050833 | MS.gene072637 | 0.9824 | 5.41E-155 | -1.69E-46 |
| MS.gene054642 | MS.gene072637 | -0.814299 | 1.65E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene072637 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene072637 | -0.811664 | 6.25E-51 | -1.69E-46 |
| MS.gene055956 | MS.gene072637 | 0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene072637 | -0.821574 | 3.76E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene072637 | 0.8128 | 3.53E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene072637 | -0.805158 | 1.53E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene072637 | -0.809403 | 1.93E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene072637 | -0.813468 | 2.52E-51 | -1.69E-46 |
| MS.gene060823 | MS.gene072637 | 0.806526 | 7.88E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072637.t1 | MTR_7g110780 | 97.112 | 277 | 7 | 1 | 1 | 276 | 1 | 277 | 0.0 | 557 |
| MS.gene072637.t1 | MTR_3g118390 | 54.959 | 242 | 108 | 1 | 35 | 276 | 126 | 366 | 3.00e-98 | 293 |
| MS.gene072637.t1 | MTR_8g074350 | 54.132 | 242 | 109 | 1 | 35 | 276 | 80 | 319 | 2.21e-95 | 283 |
| MS.gene072637.t1 | MTR_8g074330 | 50.826 | 242 | 117 | 1 | 35 | 276 | 80 | 319 | 8.69e-90 | 269 |
| MS.gene072637.t1 | MTR_8g074335 | 50.826 | 242 | 104 | 1 | 35 | 276 | 82 | 308 | 1.75e-86 | 260 |
| MS.gene072637.t1 | MTR_7g021640 | 38.735 | 253 | 146 | 4 | 33 | 276 | 58 | 310 | 4.97e-53 | 175 |
| MS.gene072637.t1 | MTR_2g034680 | 38.889 | 252 | 144 | 6 | 35 | 276 | 56 | 307 | 4.01e-52 | 173 |
| MS.gene072637.t1 | MTR_2g099470 | 38.397 | 237 | 110 | 6 | 35 | 270 | 81 | 282 | 4.65e-52 | 171 |
| MS.gene072637.t1 | MTR_1g105535 | 38.034 | 234 | 141 | 3 | 33 | 262 | 61 | 294 | 5.10e-50 | 167 |
| MS.gene072637.t1 | MTR_2g099465 | 37.238 | 239 | 115 | 6 | 33 | 270 | 50 | 254 | 9.50e-49 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072637.t1 | AT4G01700 | 69.549 | 266 | 81 | 0 | 11 | 276 | 14 | 279 | 5.38e-146 | 410 |
| MS.gene072637.t1 | AT1G02360 | 72.314 | 242 | 67 | 0 | 35 | 276 | 30 | 271 | 6.52e-140 | 395 |
| MS.gene072637.t1 | AT1G02360 | 67.279 | 272 | 77 | 2 | 9 | 276 | 60 | 323 | 6.88e-140 | 397 |
| MS.gene072637.t1 | AT1G02360 | 67.279 | 272 | 77 | 2 | 9 | 276 | 54 | 317 | 8.01e-140 | 396 |
| MS.gene072637.t1 | AT3G12500 | 58.264 | 242 | 100 | 1 | 35 | 276 | 86 | 326 | 2.09e-106 | 312 |
| MS.gene072637.t1 | AT3G16920 | 39.286 | 252 | 143 | 7 | 35 | 276 | 68 | 319 | 4.03e-52 | 173 |
| MS.gene072637.t1 | AT3G16920 | 39.286 | 252 | 143 | 7 | 35 | 276 | 92 | 343 | 6.62e-52 | 173 |
| MS.gene072637.t1 | AT1G05850 | 37.450 | 251 | 148 | 5 | 35 | 276 | 60 | 310 | 1.95e-51 | 171 |
| MS.gene072637.t1 | AT1G05850 | 37.450 | 251 | 148 | 5 | 35 | 276 | 60 | 310 | 1.95e-51 | 171 |
| MS.gene072637.t1 | AT3G54420 | 36.820 | 239 | 115 | 5 | 33 | 270 | 70 | 273 | 3.36e-49 | 164 |
| MS.gene072637.t1 | AT2G43590 | 37.131 | 237 | 108 | 7 | 35 | 270 | 68 | 264 | 1.12e-48 | 162 |
| MS.gene072637.t1 | AT2G43610 | 37.500 | 240 | 108 | 7 | 31 | 270 | 84 | 281 | 2.56e-42 | 146 |
| MS.gene072637.t1 | AT2G43580 | 34.599 | 237 | 114 | 7 | 35 | 270 | 69 | 265 | 8.69e-42 | 144 |
| MS.gene072637.t1 | AT2G43570 | 34.413 | 247 | 117 | 6 | 29 | 270 | 71 | 277 | 5.09e-41 | 143 |
| MS.gene072637.t1 | AT2G43620 | 35.833 | 240 | 112 | 7 | 31 | 270 | 86 | 283 | 1.93e-40 | 142 |
| MS.gene072637.t1 | AT1G56680 | 34.156 | 243 | 115 | 9 | 31 | 270 | 80 | 280 | 2.02e-30 | 115 |
| MS.gene072637.t1 | AT1G56680 | 34.156 | 243 | 115 | 9 | 31 | 270 | 103 | 303 | 4.89e-30 | 115 |
| MS.gene072637.t1 | AT2G43600 | 34.440 | 241 | 114 | 10 | 31 | 270 | 76 | 273 | 2.80e-28 | 109 |
| MS.gene072637.t1 | AT2G43600 | 34.440 | 241 | 114 | 10 | 31 | 270 | 97 | 294 | 4.34e-28 | 109 |
| MS.gene072637.t1 | AT3G47540 | 28.992 | 238 | 114 | 9 | 35 | 270 | 30 | 214 | 9.89e-27 | 103 |
| MS.gene072637.t1 | AT3G47540 | 28.139 | 231 | 111 | 9 | 35 | 263 | 30 | 207 | 1.05e-22 | 95.1 |
Find 66 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATACTGGACCTAATT+TGG | 0.146711 | 7.4:-5225738 | MS.gene072637:CDS |
| CTTTCCTCCTCTGCATCTTT+AGG | 0.179427 | 7.4:-5227126 | MS.gene072637:CDS |
| AGAGAAGAGATTGGTATAAT+AGG | 0.189791 | 7.4:+5227081 | None:intergenic |
| ACCAAATTGAGGAAAATATT+TGG | 0.190558 | 7.4:+5226960 | None:intergenic |
| AGCAATAAAGCAAAATAATA+TGG | 0.234582 | 7.4:+5227149 | None:intergenic |
| TTAGGAGTTGAATCATTTAT+TGG | 0.247252 | 7.4:-5227108 | MS.gene072637:CDS |
| TGTGATGGTTGGAAAATATT+TGG | 0.256663 | 7.4:-5225909 | MS.gene072637:CDS |
| TCAAAACTGCTCTATGGTTT+TGG | 0.260706 | 7.4:-5225967 | MS.gene072637:CDS |
| GCTAATCGCACAGCTGGTTT+TGG | 0.280719 | 7.4:-5225866 | MS.gene072637:CDS |
| TGATATGCACAATCCAAATT+AGG | 0.305058 | 7.4:+5225725 | None:intergenic |
| TTGTGTAGGAATTATAACTA+TGG | 0.344973 | 7.4:-5226064 | MS.gene072637:intron |
| TAGGAGTTGAATCATTTATT+GGG | 0.345727 | 7.4:-5227107 | MS.gene072637:CDS |
| AAAGATTGGCCTTGCTTTGA+AGG | 0.347412 | 7.4:-5226769 | MS.gene072637:CDS |
| GAGAAGAGATTGGTATAATA+GGG | 0.356153 | 7.4:+5227082 | None:intergenic |
| TTGCTTTCAAAACTGCTCTA+TGG | 0.359827 | 7.4:-5225973 | MS.gene072637:CDS |
| AAGCATAAGCCCCAAGAAAA+TGG | 0.365932 | 7.4:+5226838 | None:intergenic |
| GCAAGAGTTAATGATCGAAT+TGG | 0.385700 | 7.4:-5225791 | MS.gene072637:CDS |
| AAGTTGTTCAATGTGGATAC+TGG | 0.403395 | 7.4:-5225749 | MS.gene072637:CDS |
| GAATTGTTTGATACAATCTC+TGG | 0.409450 | 7.4:+5226001 | None:intergenic |
| TTTCCTCAATTTGGTACTAC+AGG | 0.418672 | 7.4:-5226952 | MS.gene072637:CDS |
| GGGAAGGCGTTAGGATTTGA+TGG | 0.420884 | 7.4:-5226034 | MS.gene072637:CDS |
| CCCCAAGAAAATGGTCCATC+AGG | 0.433362 | 7.4:+5226847 | None:intergenic |
| GCAATAAAGCAAAATAATAT+GGG | 0.436056 | 7.4:+5227150 | None:intergenic |
| GTATACCAAGATAGTTGAAT+AGG | 0.440524 | 7.4:+5226724 | None:intergenic |
| TCATTAACTCTTGCATCATC+AGG | 0.440723 | 7.4:+5225800 | None:intergenic |
| GTAGGAATATTGTGTCATAA+AGG | 0.444283 | 7.4:+5227046 | None:intergenic |
| GAGGTCCTATTCAACTATCT+TGG | 0.447585 | 7.4:-5226729 | MS.gene072637:intron |
| GGGTGGGCCACTGCACCTGA+TGG | 0.450425 | 7.4:-5226862 | MS.gene072637:CDS |
| TTACTTATTAGAGAAGAGAT+TGG | 0.451038 | 7.4:+5227072 | None:intergenic |
| TGGAAGCTTCAATGAAGGAT+TGG | 0.458638 | 7.4:+5226980 | None:intergenic |
| GAATCACAGTAGTTACTTTG+AGG | 0.463755 | 7.4:+5226799 | None:intergenic |
| GGACCAGCAGGGAAGGCGTT+AGG | 0.472444 | 7.4:-5226043 | MS.gene072637:CDS |
| AAATATAGTCAATGGTGGAT+TGG | 0.476185 | 7.4:-5225834 | MS.gene072637:CDS |
| AATTATAACTATGGACCAGC+AGG | 0.477533 | 7.4:-5226055 | MS.gene072637:CDS |
| AATCCTAACGCCTTCCCTGC+TGG | 0.489708 | 7.4:+5226040 | None:intergenic |
| ACATTGTGACAAGAAGGTAT+TGG | 0.494924 | 7.4:+5225929 | None:intergenic |
| GTGATTCTACTGACAAAGAT+TGG | 0.496296 | 7.4:-5226783 | MS.gene072637:CDS |
| ATATTTGGAAGCTTCAATGA+AGG | 0.511487 | 7.4:+5226975 | None:intergenic |
| GCTTCAATGAAGGATTGGTA+AGG | 0.525028 | 7.4:+5226985 | None:intergenic |
| CAGATTTCACATGAAACTAC+TGG | 0.531637 | 7.4:-5226886 | MS.gene072637:CDS |
| ATAGAAGCTAATCGCACAGC+TGG | 0.541134 | 7.4:-5225872 | MS.gene072637:CDS |
| AGCTATCTCACGCTTTCTTG+TGG | 0.548914 | 7.4:+5226921 | None:intergenic |
| GGCAAAAGTTACAAAGGAAG+AGG | 0.557753 | 7.4:-5226748 | MS.gene072637:CDS |
| ACCATCACATTGTGACAAGA+AGG | 0.564779 | 7.4:+5225923 | None:intergenic |
| ACATGAAACTACTGGTGGGT+GGG | 0.569584 | 7.4:-5226878 | MS.gene072637:CDS |
| AACTCCTAAAGATGCAGAGG+AGG | 0.579707 | 7.4:+5227122 | None:intergenic |
| GGAAGGCGTTAGGATTTGAT+GGG | 0.584389 | 7.4:-5226033 | MS.gene072637:CDS |
| CAACCTGTAGTACCAAATTG+AGG | 0.584601 | 7.4:+5226949 | None:intergenic |
| GTCAATGGTGGATTGGAATG+TGG | 0.588138 | 7.4:-5225827 | MS.gene072637:CDS |
| CAATAAAGCAAAATAATATG+GGG | 0.588254 | 7.4:+5227151 | None:intergenic |
| TTTGAAGGCAAAAGTTACAA+AGG | 0.591242 | 7.4:-5226754 | MS.gene072637:CDS |
| TCTTGTCACAATGTGATGGT+TGG | 0.593829 | 7.4:-5225920 | MS.gene072637:CDS |
| ATGCAGTGTCATCTTTGTGT+AGG | 0.594953 | 7.4:+5227028 | None:intergenic |
| CACATGAAACTACTGGTGGG+TGG | 0.597128 | 7.4:-5226879 | MS.gene072637:CDS |
| TAACTATGGACCAGCAGGGA+AGG | 0.603344 | 7.4:-5226050 | MS.gene072637:CDS |
| CTTCAATGAAGGATTGGTAA+GGG | 0.607116 | 7.4:+5226986 | None:intergenic |
| AAATGGTCCATCAGGTGCAG+TGG | 0.617726 | 7.4:+5226855 | None:intergenic |
| GTGACAAATATAGTCAATGG+TGG | 0.618848 | 7.4:-5225839 | MS.gene072637:CDS |
| TTGGTGACAAATATAGTCAA+TGG | 0.622222 | 7.4:-5225842 | MS.gene072637:CDS |
| TTCAACTCCTAAAGATGCAG+AGG | 0.624622 | 7.4:+5227119 | None:intergenic |
| ACCTTCTTGTCACAATGTGA+TGG | 0.640940 | 7.4:-5225924 | MS.gene072637:CDS |
| ATTTCACATGAAACTACTGG+TGG | 0.650794 | 7.4:-5226883 | MS.gene072637:CDS |
| AATAAAGCAAAATAATATGG+GGG | 0.669386 | 7.4:+5227152 | None:intergenic |
| ATTATAACTATGGACCAGCA+GGG | 0.676909 | 7.4:-5226054 | MS.gene072637:CDS |
| ATATACTAAGTTGTTCAATG+TGG | 0.678623 | 7.4:-5225756 | MS.gene072637:CDS |
| TTTCACATGAAACTACTGGT+GGG | 0.698219 | 7.4:-5226882 | MS.gene072637:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACGAAATAATTACTAAAT+CGG | + | chr7.4:5226413-5226432 | None:intergenic | 15.0% |
| !! | TTTGTCAACAAAAAAAAAAA+AGG | - | chr7.4:5226584-5226603 | MS.gene072637:intron | 15.0% |
| !! | AATAAAGCAAAATAATATGG+GGG | + | chr7.4:5225734-5225753 | None:intergenic | 20.0% |
| !! | AGCAATAAAGCAAAATAATA+TGG | + | chr7.4:5225737-5225756 | None:intergenic | 20.0% |
| !! | CAATAAAGCAAAATAATATG+GGG | + | chr7.4:5225735-5225754 | None:intergenic | 20.0% |
| !! | GCAATAAAGCAAAATAATAT+GGG | + | chr7.4:5225736-5225755 | None:intergenic | 20.0% |
| !! | TACGAAATAATTACTAAATC+GGG | + | chr7.4:5226412-5226431 | None:intergenic | 20.0% |
| !! | TGATTAAGTATAATATGGTT+GGG | + | chr7.4:5226645-5226664 | None:intergenic | 20.0% |
| !! | TTGATTAAGTATAATATGGT+TGG | + | chr7.4:5226646-5226665 | None:intergenic | 20.0% |
| ! | ACCAAATTGAGGAAAATATT+TGG | + | chr7.4:5225926-5225945 | None:intergenic | 25.0% |
| ! | ATATACTAAGTTGTTCAATG+TGG | - | chr7.4:5227127-5227146 | MS.gene072637:CDS | 25.0% |
| ! | TAGGAGTTGAATCATTTATT+GGG | - | chr7.4:5225776-5225795 | MS.gene072637:CDS | 25.0% |
| ! | TCGCTTGATTAAGTATAATA+TGG | + | chr7.4:5226650-5226669 | None:intergenic | 25.0% |
| ! | TTACTTATTAGAGAAGAGAT+TGG | + | chr7.4:5225814-5225833 | None:intergenic | 25.0% |
| ! | TTAGGAGTTGAATCATTTAT+TGG | - | chr7.4:5225775-5225794 | MS.gene072637:CDS | 25.0% |
| ! | TTGTGTAGGAATTATAACTA+TGG | - | chr7.4:5226819-5226838 | MS.gene072637:CDS | 25.0% |
| !! | TCCAAATATTTTCCTCAATT+TGG | - | chr7.4:5225922-5225941 | MS.gene072637:CDS | 25.0% |
| !!! | CATAGAAACAATTTTAGGTT+TGG | + | chr7.4:5226265-5226284 | None:intergenic | 25.0% |
| AGAGAAGAGATTGGTATAAT+AGG | + | chr7.4:5225805-5225824 | None:intergenic | 30.0% | |
| AGCTAATGAGTTTCAGTTAA+AGG | - | chr7.4:5226682-5226701 | MS.gene072637:intron | 30.0% | |
| ATATTTGGAAGCTTCAATGA+AGG | + | chr7.4:5225911-5225930 | None:intergenic | 30.0% | |
| CTACACAAAAGTTTATGAGA+GGG | + | chr7.4:5226807-5226826 | None:intergenic | 30.0% | |
| GAATTGTTTGATACAATCTC+TGG | + | chr7.4:5226885-5226904 | None:intergenic | 30.0% | |
| GAGAAGAGATTGGTATAATA+GGG | + | chr7.4:5225804-5225823 | None:intergenic | 30.0% | |
| GTAGGAATATTGTGTCATAA+AGG | + | chr7.4:5225840-5225859 | None:intergenic | 30.0% | |
| GTATACCAAGATAGTTGAAT+AGG | + | chr7.4:5226162-5226181 | None:intergenic | 30.0% | |
| TACACAAAAGTTTATGAGAG+GGG | + | chr7.4:5226806-5226825 | None:intergenic | 30.0% | |
| TGATATGCACAATCCAAATT+AGG | + | chr7.4:5227161-5227180 | None:intergenic | 30.0% | |
| TGTGATGGTTGGAAAATATT+TGG | - | chr7.4:5226974-5226993 | MS.gene072637:CDS | 30.0% | |
| TTTGAAGGCAAAAGTTACAA+AGG | - | chr7.4:5226129-5226148 | MS.gene072637:intron | 30.0% | |
| ! | AGGATCATATGGATTAAAAC+TGG | + | chr7.4:5226343-5226362 | None:intergenic | 30.0% |
| ! | GAGCTCATAGAAACAATTTT+AGG | + | chr7.4:5226270-5226289 | None:intergenic | 30.0% |
| ! | TTGGTAAGGGTAAAAGTTTT+TGG | + | chr7.4:5225887-5225906 | None:intergenic | 30.0% |
| ! | TTGGTGACAAATATAGTCAA+TGG | - | chr7.4:5227041-5227060 | MS.gene072637:CDS | 30.0% |
| ! | TTTGAAACTAATTTAGCGAC+CGG | + | chr7.4:5226456-5226475 | None:intergenic | 30.0% |
| !! | AAATATAGTCAATGGTGGAT+TGG | - | chr7.4:5227049-5227068 | MS.gene072637:CDS | 30.0% |
| AAAACTTATTTCCCAAGCTG+AGG | + | chr7.4:5226368-5226387 | None:intergenic | 35.0% | |
| AAATAATATGGGGGTGAGAA+TGG | + | chr7.4:5225725-5225744 | None:intergenic | 35.0% | |
| AAGTTGTTCAATGTGGATAC+TGG | - | chr7.4:5227134-5227153 | MS.gene072637:CDS | 35.0% | |
| AATTATAACTATGGACCAGC+AGG | - | chr7.4:5226828-5226847 | MS.gene072637:CDS | 35.0% | |
| AGCAGCGTTAAAATTCTTGA+CGG | - | chr7.4:5226317-5226336 | MS.gene072637:intron | 35.0% | |
| ATTATAACTATGGACCAGCA+GGG | - | chr7.4:5226829-5226848 | MS.gene072637:CDS | 35.0% | |
| ATTTCACATGAAACTACTGG+TGG | - | chr7.4:5226000-5226019 | MS.gene072637:CDS | 35.0% | |
| CAGATTTCACATGAAACTAC+TGG | - | chr7.4:5225997-5226016 | MS.gene072637:CDS | 35.0% | |
| CCTACACAAAAGTTTATGAG+AGG | + | chr7.4:5226808-5226827 | None:intergenic | 35.0% | |
| GCAAGAGTTAATGATCGAAT+TGG | - | chr7.4:5227092-5227111 | MS.gene072637:CDS | 35.0% | |
| GTGACAAATATAGTCAATGG+TGG | - | chr7.4:5227044-5227063 | MS.gene072637:CDS | 35.0% | |
| GTGATTCTACTGACAAAGAT+TGG | - | chr7.4:5226100-5226119 | MS.gene072637:intron | 35.0% | |
| TATTTCGTATCTGTAGTGAC+CGG | - | chr7.4:5226423-5226442 | MS.gene072637:intron | 35.0% | |
| TCATTAACTCTTGCATCATC+AGG | + | chr7.4:5227086-5227105 | None:intergenic | 35.0% | |
| TGTGGATTTGGACAAAGAAT+TGG | + | chr7.4:5226239-5226258 | None:intergenic | 35.0% | |
| TTGCTTTCAAAACTGCTCTA+TGG | - | chr7.4:5226910-5226929 | MS.gene072637:CDS | 35.0% | |
| TTTCACATGAAACTACTGGT+GGG | - | chr7.4:5226001-5226020 | MS.gene072637:CDS | 35.0% | |
| TTTCCTCAATTTGGTACTAC+AGG | - | chr7.4:5225931-5225950 | MS.gene072637:CDS | 35.0% | |
| ! | ACATTGTGACAAGAAGGTAT+TGG | + | chr7.4:5226957-5226976 | None:intergenic | 35.0% |
| ! | CCTCTCATAAACTTTTGTGT+AGG | - | chr7.4:5226805-5226824 | MS.gene072637:CDS | 35.0% |
| ! | CTTCAATGAAGGATTGGTAA+GGG | + | chr7.4:5225900-5225919 | None:intergenic | 35.0% |
| ! | GAATCACAGTAGTTACTTTG+AGG | + | chr7.4:5226087-5226106 | None:intergenic | 35.0% |
| ! | TAACTTTTGCCTTCAAAGCA+AGG | + | chr7.4:5226126-5226145 | None:intergenic | 35.0% |
| ! | TCAAAACTGCTCTATGGTTT+TGG | - | chr7.4:5226916-5226935 | MS.gene072637:CDS | 35.0% |
| !!! | CAATTTTAGGTTTGGATGTG+TGG | + | chr7.4:5226257-5226276 | None:intergenic | 35.0% |
| !!! | TAAGGGTAAAAGTTTTTGGC+AGG | + | chr7.4:5225883-5225902 | None:intergenic | 35.0% |
| AAGCATAAGCCCCAAGAAAA+TGG | + | chr7.4:5226048-5226067 | None:intergenic | 40.0% | |
| ACCATCACATTGTGACAAGA+AGG | + | chr7.4:5226963-5226982 | None:intergenic | 40.0% | |
| ACCTTCTTGTCACAATGTGA+TGG | - | chr7.4:5226959-5226978 | MS.gene072637:CDS | 40.0% | |
| ATGCAGTGTCATCTTTGTGT+AGG | + | chr7.4:5225858-5225877 | None:intergenic | 40.0% | |
| CAACCTGTAGTACCAAATTG+AGG | + | chr7.4:5225937-5225956 | None:intergenic | 40.0% | |
| GAGGTCCTATTCAACTATCT+TGG | - | chr7.4:5226154-5226173 | MS.gene072637:intron | 40.0% | |
| GGCAAAAGTTACAAAGGAAG+AGG | - | chr7.4:5226135-5226154 | MS.gene072637:intron | 40.0% | |
| TAGGTTTGGATGTGTGGATT+TGG | + | chr7.4:5226251-5226270 | None:intergenic | 40.0% | |
| TCTTGTCACAATGTGATGGT+TGG | - | chr7.4:5226963-5226982 | MS.gene072637:CDS | 40.0% | |
| TGGAAGCTTCAATGAAGGAT+TGG | + | chr7.4:5225906-5225925 | None:intergenic | 40.0% | |
| TGTGGATACTGGACCTAATT+TGG | - | chr7.4:5227145-5227164 | MS.gene072637:CDS | 40.0% | |
| TTCAACTCCTAAAGATGCAG+AGG | + | chr7.4:5225767-5225786 | None:intergenic | 40.0% | |
| TTTAGCGACCGGTTATAAAC+CGG | + | chr7.4:5226445-5226464 | None:intergenic | 40.0% | |
| ! | GCTTCAATGAAGGATTGGTA+AGG | + | chr7.4:5225901-5225920 | None:intergenic | 40.0% |
| ! | TGTAGTGACCGGTTTATAAC+CGG | - | chr7.4:5226434-5226453 | MS.gene072637:intron | 40.0% |
| !! | AAAGATTGGCCTTGCTTTGA+AGG | - | chr7.4:5226114-5226133 | MS.gene072637:intron | 40.0% |
| !! | ACCTGATGGACCATTTTCTT+GGG | - | chr7.4:5226035-5226054 | MS.gene072637:CDS | 40.0% |
| AACTCCTAAAGATGCAGAGG+AGG | + | chr7.4:5225764-5225783 | None:intergenic | 45.0% | |
| AAGCTGAGGTGAGGATCATA+TGG | + | chr7.4:5226354-5226373 | None:intergenic | 45.0% | |
| AGCTATCTCACGCTTTCTTG+TGG | + | chr7.4:5225965-5225984 | None:intergenic | 45.0% | |
| ATAGAAGCTAATCGCACAGC+TGG | - | chr7.4:5227011-5227030 | MS.gene072637:CDS | 45.0% | |
| ATATGATCCTCACCTCAGCT+TGG | - | chr7.4:5226353-5226372 | MS.gene072637:intron | 45.0% | |
| CTTTCCTCCTCTGCATCTTT+AGG | - | chr7.4:5225757-5225776 | MS.gene072637:CDS | 45.0% | |
| TATGATCCTCACCTCAGCTT+GGG | - | chr7.4:5226354-5226373 | MS.gene072637:intron | 45.0% | |
| TTATTTCCCAAGCTGAGGTG+AGG | + | chr7.4:5226363-5226382 | None:intergenic | 45.0% | |
| ! | ACATGAAACTACTGGTGGGT+GGG | - | chr7.4:5226005-5226024 | MS.gene072637:CDS | 45.0% |
| !! | CACCTGATGGACCATTTTCT+TGG | - | chr7.4:5226034-5226053 | MS.gene072637:CDS | 45.0% |
| !! | CCTGATGGACCATTTTCTTG+GGG | - | chr7.4:5226036-5226055 | MS.gene072637:CDS | 45.0% |
| !! | GGAAGGCGTTAGGATTTGAT+GGG | - | chr7.4:5226850-5226869 | MS.gene072637:CDS | 45.0% |
| !! | GTCAATGGTGGATTGGAATG+TGG | - | chr7.4:5227056-5227075 | MS.gene072637:CDS | 45.0% |
| !! | TATTAGATTAAATTATTATT+TGG | - | chr7.4:5226206-5226225 | MS.gene072637:intron | 5.0% |
| AAATGGTCCATCAGGTGCAG+TGG | + | chr7.4:5226031-5226050 | None:intergenic | 50.0% | |
| CACATGAAACTACTGGTGGG+TGG | - | chr7.4:5226004-5226023 | MS.gene072637:CDS | 50.0% | |
| CCCCAAGAAAATGGTCCATC+AGG | + | chr7.4:5226039-5226058 | None:intergenic | 50.0% | |
| TAACTATGGACCAGCAGGGA+AGG | - | chr7.4:5226833-5226852 | MS.gene072637:CDS | 50.0% | |
| !! | GCTAATCGCACAGCTGGTTT+TGG | - | chr7.4:5227017-5227036 | MS.gene072637:CDS | 50.0% |
| !! | GGGAAGGCGTTAGGATTTGA+TGG | - | chr7.4:5226849-5226868 | MS.gene072637:CDS | 50.0% |
| !!! | TCGCACAGCTGGTTTTGGAT+TGG | - | chr7.4:5227022-5227041 | MS.gene072637:CDS | 50.0% |
| AATCCTAACGCCTTCCCTGC+TGG | + | chr7.4:5226846-5226865 | None:intergenic | 55.0% | |
| !! | GGACCAGCAGGGAAGGCGTT+AGG | - | chr7.4:5226840-5226859 | MS.gene072637:CDS | 65.0% |
| GGGTGGGCCACTGCACCTGA+TGG | - | chr7.4:5226021-5226040 | MS.gene072637:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 5225712 | 5227193 | 5225712 | ID=MS.gene072637 |
| chr7.4 | mRNA | 5225712 | 5227193 | 5225712 | ID=MS.gene072637.t1;Parent=MS.gene072637 |
| chr7.4 | exon | 5226730 | 5227193 | 5226730 | ID=MS.gene072637.t1.exon1;Parent=MS.gene072637.t1 |
| chr7.4 | CDS | 5226730 | 5227193 | 5226730 | ID=cds.MS.gene072637.t1;Parent=MS.gene072637.t1 |
| chr7.4 | exon | 5225712 | 5226078 | 5225712 | ID=MS.gene072637.t1.exon2;Parent=MS.gene072637.t1 |
| chr7.4 | CDS | 5225712 | 5226078 | 5225712 | ID=cds.MS.gene072637.t1;Parent=MS.gene072637.t1 |
| Gene Sequence |
| Protein sequence |
